------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file CK2_BETA PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CK2_BETA.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: KC2B_ARATH 287 KC2B_BOVIN 209 KC2B_CAEEL 234 KC2B_DROME 215 KC2B_HUMAN 215 KC2B_SCHPO 231 KC2B_XENLA 215 KC2B_YEAST 278 KC2C_ARATH 282 KC2C_YEAST 258 STEL_DROME 172 Pratt run started at Thu Feb 6 19:07:37 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 78.2310 11( 11) Y-G-x-I-H-A-R-x-I-x(4)-G-x(3)-M-x(2)-K-x(5)-F-G-x-C-P-x(3)-C-x(2,3)-Q-x(1,2)-L-P-x-G 2: 74.0609 11( 11) G-x-I-H-A-R-x-I-x(4)-G-x(3)-M-x(2)-K-x(5)-F-G-x-C-P-x(3)-C-x(2,3)-Q-x(1,2)-L-P-x-G 3: 69.8909 11( 11) I-H-A-R-x-I-x(4)-G-x(3)-M-x(2)-K-x(5)-F-G-x-C-P-x(3)-C-x(2,3)-Q-x(1,2)-L-P-x-G 4: 65.7208 11( 11) H-A-R-x-I-x(4)-G-x(3)-M-x(2)-K-x(5)-F-G-x-C-P-x(3)-C-x(2,3)-Q-x(1,2)-L-P-x-G 5: 61.5508 11( 11) A-R-x-I-x(4)-G-x(3)-M-x(2)-K-x(5)-F-G-x-C-P-x(3)-C-x(2,3)-Q-x(1,2)-L-P-x-G 6: 57.3807 11( 11) R-x-I-x(4)-G-x(3)-M-x(2)-K-x(5)-F-G-x-C-P-x(3)-C-x(2,3)-Q-x(1,2)-L-P-x-G 7: 53.2107 11( 11) I-x(4)-G-x(3)-M-x(2)-K-x(5)-F-G-x-C-P-x(3)-C-x(2,3)-Q-x(1,2)-L-P-x-G 8: 49.0406 11( 11) G-x(3)-M-x(2)-K-x(5)-F-G-x-C-P-x(3)-C-x(2,3)-Q-x(1,2)-L-P-x-G 9: 44.8706 11( 11) M-x(2)-K-x(5)-F-G-x-C-P-x(3)-C-x(2,3)-Q-x(1,2)-L-P-x-G 10: 40.7005 11( 11) K-x(5)-F-G-x-C-P-x(3)-C-x(2,3)-Q-x(1,2)-L-P-x-G 11: 36.5305 11( 11) F-G-x-C-P-x(3)-C-x(2,3)-Q-x(1,2)-L-P-x-G 12: 32.3604 11( 11) G-x-C-P-x(3)-C-x(2,3)-Q-x(1,2)-L-P-x-G 13: 28.1904 11( 11) C-P-x(3)-C-x(2,3)-Q-x(1,2)-L-P-x-G 14: 25.0203 11( 11) V-x(3)-C-P-x-C-x(5)-P-x-S 15: 24.0203 11( 11) P-x(3)-C-x(2,3)-Q-x(1,2)-L-P-x-G 16: 24.0203 11( 11) W-x(3)-F-x(4)-G-x(2,3)-F-x(0,1)-C-x-V 17: 20.3503 11( 11) G-x(3)-G-x(2)-F-P-x(2,3)-F 18: 20.3503 11( 11) E-x(5)-L-x(2,3)-I-x(4)-I-x(4)-G 19: 19.8503 11( 11) F-x(0,1)-G-x(2)-F-P-x(2,3)-F 20: 19.8503 11( 11) G-x(1,2)-F-x(0,1)-G-x(2)-F-P Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 103.7750 11( 11) Y-G-[LM]-I-H-A-R-[FY]-I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] B 2: 100.2081 11( 11) Y-G-x-I-H-A-R-[FY]-I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] C 3: 99.6050 11( 11) G-[LM]-I-H-A-R-[FY]-I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] D 4: 94.5562 11( 11) W-[IV]-[DPST]-x-F-x-[GNS]-x(2)-G-x(2,3)-F-x(0,1)-C-[DEQR]-V-[DP]-[DEPT]-[DE]-[FY]-[IV]-[EQT]-D-x-F-N-x(2)-[GNS]-L-[ENQS]-x(2)-[SV]-[EPS]-x(2)-[DERS]-x(2)-[LV]-x(2)-[IV]-[ILV]-D E 5: 91.8680 11( 11) I-H-A-R-[FY]-I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] F 6: 87.6980 11( 11) H-A-R-[FY]-I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] G 7: 83.5279 11( 11) A-R-[FY]-I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] H 8: 79.3579 11( 11) R-[FY]-I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] I 9: 72.0033 11( 11) I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] J 10: 64.6578 11( 11) G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] K 11: 57.2012 11( 11) M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] L 12: 53.0311 11( 11) K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] M 13: 42.9367 11( 11) F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] N 14: 39.9850 11( 11) E-x(2)-[AS]-[ER]-x-L-x(2,3)-I-x(4)-I-x-[ST]-x(2)-G-[IL]-x(4)-[ADE]-K O 15: 38.7667 11( 11) G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] P 16: 34.6255 11( 11) V-[KR]-x-[HY]-C-P-x-C-x(3)-[FY]-x-P-x-S Q 17: 34.5966 11( 11) C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] R 18: 34.5610 11( 11) G-x(1,2)-F-x(0,1)-G-[PT]-[GST]-F-P-x-[ILMV]-[FL]-[FL] S 19: 32.7404 11( 11) G-[AS]-x-[FW]-G-[PT]-[GST]-F-P-x(2,3)-F T 20: 30.4266 11( 11) P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 103.7750 11( 11) Y-G-[LM]-I-H-A-R-[FY]-I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 172- 218: aaeml YGLIHARYIlTskGLaaMldKYknyDFGrCPRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 76- 122: aaeml YGLIHARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 79- 125: aaeml YGLIHARYIlTnrGIsqMveKWrdhDFGvCPRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 80- 126: aaeml YGLIHARYIlTnrGIaqMieKYqtgDFGhCPRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 80- 126: aaeml YGLIHARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 84- 130: sarhl YGLIHARYIlTaqGLykMleKYkkcDFGhCPRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 80- 126: aaeml YGLIHARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 127- 173: aaeql YGLIHARFIlTkpGLqaMaeKFdhkEFGtCPRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 167- 213: aaeml YGMIHARFIlTskGLasMldKYknyDFGrCPRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 110- 156: dsrkl YGLIHARYIiTikGLqkMyaKYkeaDFGrCPRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 110- 156: dsrkl YGLIHARYIiTikGLqkMyaKYkeaDFGrCPRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 71- 117: dekkw YGMIHARYIrSerGLiaMhrKYlrgDFGsCPNisCdr-QntLPvGlsA vwgks B 2: 100.2081 11( 11) Y-G-x-I-H-A-R-[FY]-I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 172- 218: aaeml YGlIHARYIlTskGLaaMldKYknyDFGrCPRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 76- 122: aaeml YGlIHARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 79- 125: aaeml YGlIHARYIlTnrGIsqMveKWrdhDFGvCPRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 80- 126: aaeml YGlIHARYIlTnrGIaqMieKYqtgDFGhCPRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 80- 126: aaeml YGlIHARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 84- 130: sarhl YGlIHARYIlTaqGLykMleKYkkcDFGhCPRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 80- 126: aaeml YGlIHARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 127- 173: aaeql YGlIHARFIlTkpGLqaMaeKFdhkEFGtCPRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 167- 213: aaeml YGmIHARFIlTskGLasMldKYknyDFGrCPRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 110- 156: dsrkl YGlIHARYIiTikGLqkMyaKYkeaDFGrCPRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 110- 156: dsrkl YGlIHARYIiTikGLqkMyaKYkeaDFGrCPRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 71- 117: dekkw YGmIHARYIrSerGLiaMhrKYlrgDFGsCPNisCdr-QntLPvGlsA vwgks C 3: 99.6050 11( 11) G-[LM]-I-H-A-R-[FY]-I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 173- 218: aemly GLIHARYIlTskGLaaMldKYknyDFGrCPRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 77- 122: aemly GLIHARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 80- 125: aemly GLIHARYIlTnrGIsqMveKWrdhDFGvCPRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 81- 126: aemly GLIHARYIlTnrGIaqMieKYqtgDFGhCPRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 81- 126: aemly GLIHARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 85- 130: arhly GLIHARYIlTaqGLykMleKYkkcDFGhCPRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 81- 126: aemly GLIHARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 128- 173: aeqly GLIHARFIlTkpGLqaMaeKFdhkEFGtCPRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 168- 213: aemly GMIHARFIlTskGLasMldKYknyDFGrCPRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 111- 156: srkly GLIHARYIiTikGLqkMyaKYkeaDFGrCPRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 111- 156: srkly GLIHARYIiTikGLqkMyaKYkeaDFGrCPRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 72- 117: ekkwy GMIHARYIrSerGLiaMhrKYlrgDFGsCPNisCdr-QntLPvGlsA vwgks D 4: 94.5562 11( 11) W-[IV]-[DPST]-x-F-x-[GNS]-x(2)-G-x(2,3)-F-x(0,1)-C-[DEQR]-V-[DP]-[DEPT]-[DE]-[FY]-[IV]-[EQT]-D-x-F-N-x(2)-[GNS]-L-[ENQS]-x(2)-[SV]-[EPS]-x(2)-[DERS]-x(2)-[LV]-x(2)-[IV]-[ILV]-D Occurences: 11(11) KC2B_ARATH : 101- 147: gedts WISwFcNlrGnefF-CEVDDDYIQDdFNlcGLSslVPyyEyaLdlILD vessq KC2B_ARATH : 101- 147: gedts WISwFcNlrGne-FfCEVDDDYIQDdFNlcGLSslVPyyEyaLdlILD vessq KC2B_BOVIN : 5- 51: sevs WISwFcGlrGnefF-CEVDEDYIQDkFNltGLNeqVPhyRqaLdmILD lepde KC2B_BOVIN : 5- 51: sevs WISwFcGlrGne-FfCEVDEDYIQDkFNltGLNeqVPhyRqaLdmILD lepde KC2B_CAEEL : 9- 55: seevs WITwFcGlrGnefF-CEVDEEYIQDrFNltGLNeqVPkyRqaLdmILD lepdd KC2B_CAEEL : 9- 55: seevs WITwFcGlrGne-FfCEVDEEYIQDrFNltGLNeqVPkyRqaLdmILD lepdd KC2B_DROME : 9- 55: seevs WVTwFcGlrGnefF-CEVDEDYIQDkFNltGLNeqVPnyRqaLdmILD leped KC2B_DROME : 9- 55: seevs WVTwFcGlrGne-FfCEVDEDYIQDkFNltGLNeqVPnyRqaLdmILD leped KC2B_HUMAN : 9- 55: seevs WISwFcGlrGnefF-CEVDEDYIQDkFNltGLNeqVPhyRqaLdmILD lepde KC2B_HUMAN : 9- 55: seevs WISwFcGlrGne-FfCEVDEDYIQDkFNltGLNeqVPhyRqaLdmILD lepde KC2B_SCHPO : 16- 62: ddsqy WVDwFlGlkGnefF-CEVDEDFIQDrFNltGLSheVPhySqsLdlILD vldpd KC2B_SCHPO : 16- 62: ddsqy WVDwFlGlkGne-FfCEVDEDFIQDrFNltGLSheVPhySqsLdlILD vldpd KC2B_XENLA : 9- 55: seevs WISwFcGlrGnefF-CEVDEDYIQDkFNltGLNeqVPhyRqaLdmILD lepde KC2B_XENLA : 9- 55: seevs WISwFcGlrGne-FfCEVDEDYIQDkFNltGLNeqVPhyRqaLdmILD lepde KC2B_YEAST : 26- 72: gayde WIPsFcSrfGheyF-CQVPTEFIEDdFNmtSLSqeVPhyRkaLdlILD leams KC2C_ARATH : 96- 142: gedts WISwFcNlrGnefF-CEVDDDYIQDdFNlcGLShqVPyyDyaLdlILD vessh KC2C_ARATH : 96- 142: gedts WISwFcNlrGne-FfCEVDDDYIQDdFNlcGLShqVPyyDyaLdlILD vessh KC2C_YEAST : 38- 84: eyvdm WIDlFlGrkGheyF-CDVDPEYITDrFNlmNLQktVSkfSyvVqyIVD dldds STEL_DROME : 11- 57: nnnss WIDwFlGikGnq-FlCRVPTDYVQDtFNqmGLEyfSEilDviLkpVID sssgl E 5: 91.8680 11( 11) I-H-A-R-[FY]-I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 175- 218: mlygl IHARYIlTskGLaaMldKYknyDFGrCPRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 79- 122: mlygl IHARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 82- 125: mlygl IHARYIlTnrGIsqMveKWrdhDFGvCPRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 83- 126: mlygl IHARYIlTnrGIaqMieKYqtgDFGhCPRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 83- 126: mlygl IHARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 87- 130: hlygl IHARYIlTaqGLykMleKYkkcDFGhCPRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 83- 126: mlygl IHARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 130- 173: qlygl IHARFIlTkpGLqaMaeKFdhkEFGtCPRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 170- 213: mlygm IHARFIlTskGLasMldKYknyDFGrCPRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 113- 156: klygl IHARYIiTikGLqkMyaKYkeaDFGrCPRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 113- 156: klygl IHARYIiTikGLqkMyaKYkeaDFGrCPRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 74- 117: kwygm IHARYIrSerGLiaMhrKYlrgDFGsCPNisCdr-QntLPvGlsA vwgks F 6: 87.6980 11( 11) H-A-R-[FY]-I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 176- 218: lygli HARYIlTskGLaaMldKYknyDFGrCPRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 80- 122: lygli HARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 83- 125: lygli HARYIlTnrGIsqMveKWrdhDFGvCPRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 84- 126: lygli HARYIlTnrGIaqMieKYqtgDFGhCPRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 84- 126: lygli HARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 88- 130: lygli HARYIlTaqGLykMleKYkkcDFGhCPRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 84- 126: lygli HARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 131- 173: lygli HARFIlTkpGLqaMaeKFdhkEFGtCPRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 171- 213: lygmi HARFIlTskGLasMldKYknyDFGrCPRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 114- 156: lygli HARYIiTikGLqkMyaKYkeaDFGrCPRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 114- 156: lygli HARYIiTikGLqkMyaKYkeaDFGrCPRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 75- 117: wygmi HARYIrSerGLiaMhrKYlrgDFGsCPNisCdr-QntLPvGlsA vwgks G 7: 83.5279 11( 11) A-R-[FY]-I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 177- 218: yglih ARYIlTskGLaaMldKYknyDFGrCPRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 81- 122: yglih ARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 84- 125: yglih ARYIlTnrGIsqMveKWrdhDFGvCPRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 85- 126: yglih ARYIlTnrGIaqMieKYqtgDFGhCPRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 85- 126: yglih ARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 89- 130: yglih ARYIlTaqGLykMleKYkkcDFGhCPRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 85- 126: yglih ARYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 132- 173: yglih ARFIlTkpGLqaMaeKFdhkEFGtCPRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 172- 213: ygmih ARFIlTskGLasMldKYknyDFGrCPRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 115- 156: yglih ARYIiTikGLqkMyaKYkeaDFGrCPRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 115- 156: yglih ARYIiTikGLqkMyaKYkeaDFGrCPRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 76- 117: ygmih ARYIrSerGLiaMhrKYlrgDFGsCPNisCdr-QntLPvGlsA vwgks H 8: 79.3579 11( 11) R-[FY]-I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 178- 218: gliha RYIlTskGLaaMldKYknyDFGrCPRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 82- 122: gliha RYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 85- 125: gliha RYIlTnrGIsqMveKWrdhDFGvCPRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 86- 126: gliha RYIlTnrGIaqMieKYqtgDFGhCPRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 86- 126: gliha RYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 90- 130: gliha RYIlTaqGLykMleKYkkcDFGhCPRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 86- 126: gliha RYIlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 133- 173: gliha RFIlTkpGLqaMaeKFdhkEFGtCPRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 173- 213: gmiha RFIlTskGLasMldKYknyDFGrCPRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 116- 156: gliha RYIiTikGLqkMyaKYkeaDFGrCPRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 116- 156: gliha RYIiTikGLqkMyaKYkeaDFGrCPRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 77- 117: gmiha RYIrSerGLiaMhrKYlrgDFGsCPNisCdr-QntLPvGlsA vwgks I 9: 72.0033 11( 11) I-x-[ST]-x(2)-G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 180- 218: ihary IlTskGLaaMldKYknyDFGrCPRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 84- 122: ihary IlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 87- 125: ihary IlTnrGIsqMveKWrdhDFGvCPRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 88- 126: ihary IlTnrGIaqMieKYqtgDFGhCPRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 88- 126: ihary IlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 92- 130: ihary IlTaqGLykMleKYkkcDFGhCPRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 88- 126: ihary IlTnrGIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 135- 173: iharf IlTkpGLqaMaeKFdhkEFGtCPRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 175- 213: iharf IlTskGLasMldKYknyDFGrCPRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 118- 156: ihary IiTikGLqkMyaKYkeaDFGrCPRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 118- 156: ihary IiTikGLqkMyaKYkeaDFGrCPRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 79- 117: ihary IrSerGLiaMhrKYlrgDFGsCPNisCdr-QntLPvGlsA vwgks J 10: 64.6578 11( 11) G-[IL]-x(2)-M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 185- 218: iltsk GLaaMldKYknyDFGrCPRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 89- 122: iltnr GIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 92- 125: iltnr GIsqMveKWrdhDFGvCPRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 93- 126: iltnr GIaqMieKYqtgDFGhCPRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 93- 126: iltnr GIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 97- 130: iltaq GLykMleKYkkcDFGhCPRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 93- 126: iltnr GIaqMleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 140- 173: iltkp GLqaMaeKFdhkEFGtCPRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 180- 213: iltsk GLasMldKYknyDFGrCPRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 123- 156: iitik GLqkMyaKYkeaDFGrCPRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 123- 156: iitik GLqkMyaKYkeaDFGrCPRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 84- 117: irser GLiaMhrKYlrgDFGsCPNisCdr-QntLPvGlsA vwgks K 11: 57.2012 11( 11) M-x(2)-K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 189- 218: kglaa MldKYknyDFGrCPRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 93- 122: rgiaq MleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 96- 125: rgisq MveKWrdhDFGvCPRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 97- 126: rgiaq MieKYqtgDFGhCPRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 97- 126: rgiaq MleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 101- 130: qglyk MleKYkkcDFGhCPRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 97- 126: rgiaq MleKYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 144- 173: pglqa MaeKFdhkEFGtCPRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 184- 213: kglas MldKYknyDFGrCPRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 127- 156: kglqk MyaKYkeaDFGrCPRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 127- 156: kglqk MyaKYkeaDFGrCPRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 88- 117: rglia MhrKYlrgDFGsCPNisCdr-QntLPvGlsA vwgks L 12: 53.0311 11( 11) K-[FWY]-x(3)-[DE]-F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 192- 218: aamld KYknyDFGrCPRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 96- 122: aqmle KYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 99- 125: sqmve KWrdhDFGvCPRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 100- 126: aqmie KYqtgDFGhCPRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 100- 126: aqmle KYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 104- 130: ykmle KYkkcDFGhCPRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 100- 126: aqmle KYqqgDFGyCPRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 147- 173: qamae KFdhkEFGtCPRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 187- 213: asmld KYknyDFGrCPRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 130- 156: qkmya KYkeaDFGrCPRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 130- 156: qkmya KYkeaDFGrCPRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 91- 117: iamhr KYlrgDFGsCPNisCdr-QntLPvGlsA vwgks M 13: 42.9367 11( 11) F-G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 198- 218: yknyd FGrCPRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 102- 122: yqqgd FGyCPRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 105- 125: wrdhd FGvCPRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 106- 126: yqtgd FGhCPRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 106- 126: yqqgd FGyCPRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 110- 130: ykkcd FGhCPRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 106- 126: yqqgd FGyCPRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 153- 173: fdhke FGtCPRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 193- 213: yknyd FGrCPRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 136- 156: ykead FGrCPRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 136- 156: ykead FGrCPRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 97- 117: ylrgd FGsCPNisCdr-QntLPvGlsA vwgks N 14: 39.9850 11( 11) E-x(2)-[AS]-[ER]-x-L-x(2,3)-I-x(4)-I-x-[ST]-x(2)-G-[IL]-x(4)-[ADE]-K Occurences: 11(11) KC2B_ARATH : 165- 192: qneli EsaAEmLyglIharyIlTskGLaamlDK yknyd KC2B_BOVIN : 69- 96: qsdli EqaAEmLyglIharyIlTnrGIaqmlEK yqqgd KC2B_CAEEL : 72- 99: ntdlv EqaAEmLyglIharyIlTnrGIsqmvEK wrdhd KC2B_DROME : 73- 100: qsdmt EqaAEmLyglIharyIlTnrGIaqmiEK yqtgd KC2B_HUMAN : 73- 100: qsdli EqaAEmLyglIharyIlTnrGIaqmlEK yqqgd KC2B_SCHPO : 77- 104: vqdev EasARhLyglIharyIlTaqGLykmlEK ykkcd KC2B_XENLA : 73- 100: qsdli EqaAEmLyglIharyIlTnrGIaqmlEK yqqgd KC2B_YEAST : 120- 147: nksii EhaAEqLyglIharfIlTkpGLqamaEK fdhke KC2C_ARATH : 160- 187: qneli EsaAEmLygmIharfIlTskGLasmlDK yknyd KC2C_YEAST : 103- 130: rleql EsdSRkLyglIharyIiTikGLqkmyAK ykead STEL_DROME : 42- 68: nqmgl EyfSEiLdv-IlkpvIdSssGLlygdEK kwygm O 15: 38.7667 11( 11) G-x-C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 199- 218: knydf GrCPRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 103- 122: qqgdf GyCPRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 106- 125: rdhdf GvCPRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 107- 126: qtgdf GhCPRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 107- 126: qqgdf GyCPRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 111- 130: kkcdf GhCPRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 107- 126: qqgdf GyCPRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 154- 173: dhkef GtCPRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 194- 213: knydf GrCPRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 137- 156: keadf GrCPRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 137- 156: keadf GrCPRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 98- 117: lrgdf GsCPNisCdr-QntLPvGlsA vwgks P 16: 34.6255 11( 11) V-[KR]-x-[HY]-C-P-x-C-x(3)-[FY]-x-P-x-S Occurences: 11(11) KC2B_ARATH : 225- 240: prsst VKiYCPkCediYyPrS kyqgn KC2B_BOVIN : 129- 144: pgeam VKlYCPkCmdvYtPkS srhhh KC2B_CAEEL : 132- 147: pgeam VKlYCPrCnmvFvPrS srhqh KC2B_DROME : 133- 148: pgeam VKtYCPkCidvYtPkS srhhh KC2B_HUMAN : 133- 148: pgeam VKlYCPkCmdvYtPkS srhhh KC2B_SCHPO : 137- 152: ahaks VKlYCPrCedvYtPkS qrhas KC2B_XENLA : 133- 148: pgeam VKlYCPkCmdvYtPkS srhhh KC2B_YEAST : 180- 195: vgkht VRlYCPsCqdlYlPqS srflc KC2C_ARATH : 220- 235: prast VKiYCPkCedvYyPrS kyqgn KC2C_YEAST : 163- 178: pgidc VKlYCPsCedlYiPkS srhss STEL_DROME : 124- 139: wgkst VKiHCPrCksnFhPkS dtqld Q 17: 34.5966 11( 11) C-P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 201- 218: ydfgr CPRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 105- 122: gdfgy CPRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 108- 125: hdfgv CPRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 109- 126: gdfgh CPRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 109- 126: gdfgy CPRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 113- 130: cdfgh CPRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 109- 126: gdfgy CPRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 156- 173: kefgt CPRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 196- 213: ydfgr CPRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 139- 156: adfgr CPRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 139- 156: adfgr CPRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 100- 117: gdfgs CPNisCdr-QntLPvGlsA vwgks R 18: 34.5610 11( 11) G-x(1,2)-F-x(0,1)-G-[PT]-[GST]-F-P-x-[ILMV]-[FL]-[FL] Occurences: 11(11) KC2B_ARATH : 248- 260: qgnid GayF-GTTFPhLFL mtygh KC2B_BOVIN : 152- 164: hhhtd GayF-GTGFPhMLF mvhpe KC2B_CAEEL : 155- 167: hqhtd GsyF-GTGFPhMLF fvhpd KC2B_DROME : 156- 168: hhhtd GayF-GTGFPhMLF mvhpe KC2B_HUMAN : 156- 168: hhhtd GayF-GTGFPhMLF mvhpe KC2B_SCHPO : 160- 172: hasid GayF-GTSFPhMLF qvype KC2B_XENLA : 156- 168: hhhtd GayF-GTGFPhMLF mvhpe KC2B_YEAST : 203- 215: flcle Ga-FwGTSFPgVFL khfke KC2C_ARATH : 243- 255: qgnid GayF-GTTFPhLFL mtygh KC2C_YEAST : 186- 198: hssid GayF-GTSFPgMFL qafpd STEL_DROME : 145- 157: dtqld GamF-GPSFPdIFF sllpn S 19: 32.7404 11( 11) G-[AS]-x-[FW]-G-[PT]-[GST]-F-P-x(2,3)-F Occurences: 11(11) KC2B_ARATH : 248- 259: qgnid GAyFGTTFPhl-F lmtyg KC2B_BOVIN : 152- 164: hhhtd GAyFGTGFPhmlF mvhpe KC2B_CAEEL : 155- 167: hqhtd GSyFGTGFPhmlF fvhpd KC2B_DROME : 156- 168: hhhtd GAyFGTGFPhmlF mvhpe KC2B_HUMAN : 156- 168: hhhtd GAyFGTGFPhmlF mvhpe KC2B_SCHPO : 160- 172: hasid GAyFGTSFPhmlF qvype KC2B_XENLA : 156- 168: hhhtd GAyFGTGFPhmlF mvhpe KC2B_YEAST : 203- 214: flcle GAfWGTSFPgv-F lkhfk KC2C_ARATH : 243- 254: qgnid GAyFGTTFPhl-F lmtyg KC2C_YEAST : 186- 197: hssid GAyFGTSFPgm-F lqafp STEL_DROME : 145- 156: dtqld GAmFGPSFPdi-F fsllp STEL_DROME : 145- 157: dtqld GAmFGPSFPdifF sllpn T 20: 30.4266 11( 11) P-[NR]-x(2)-C-x(2,3)-Q-x(1,2)-L-P-x-G-x(2)-[AD] Occurences: 11(11) KC2B_ARATH : 202- 218: dfgrc PRvyCcg-QpcLPvGqsD lprss KC2B_BOVIN : 106- 122: dfgyc PRvyCen-QpmLPiGlsD ipgea KC2B_CAEEL : 109- 125: dfgvc PRvyCen-QpmLPiGlsD vpgea KC2B_DROME : 110- 126: dfghc PRvyCes-QpmLPlGlsD ipgea KC2B_HUMAN : 110- 126: dfgyc PRvyCen-QpmLPiGlsD ipgea KC2B_SCHPO : 114- 130: dfghc PRvlCng-QpmLPvGlsD iahak KC2B_XENLA : 110- 126: dfgyc PRvyCen-QpmLPiGlsD ipgea KC2B_YEAST : 157- 173: efgtc PRyyCngmQl-LPcGlsD tvgkh KC2C_ARATH : 197- 213: dfgrc PRvyCcg-QpcLPvGqsD ipras KC2C_YEAST : 140- 156: dfgrc PRvyCnlqQl-LPvGlhD ipgid KC2C_YEAST : 140- 156: dfgrc PRvyCnl-QqlLPvGlhD ipgid STEL_DROME : 101- 117: dfgsc PNisCdr-QntLPvGlsA vwgks Number of patterns evaluated by Pratt:3404 Total running time: 2 seconds