------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file CHORISMATE_SYNTHASE_3 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CHORISMATE_SYNTHASE_3.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AROC_BACSU 368 AROC_CORSE 447 AROC_ECOLI 360 AROC_HAEIN 357 AROC_SALTI 360 AROC_SYNY3 362 AROC_VIBAN 372 AROC_YEAST 376 Pratt run started at Thu Feb 6 19:07:23 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 57.3807 8( 8) R-x(0,1)-S-x(0,1)-A-R-E-T-x(2)-R-V-A-x-G-A-x-A-x-K-x-L 2: 53.7107 15( 8) S-x(0,1)-A-R-E-T-x(2)-R-V-A-x-G-A-x-A-x-K-x-L 3: 53.2107 8( 8) P-x(3)-G-x(4,5)-D-x(1,2)-L-x(4)-A-x-A-x(5)-A-x-K-G-x-E-x-G-x-G-F 4: 49.0406 8( 8) G-x(4,5)-D-x(1,2)-L-x(4)-A-x-A-x(5)-A-x-K-G-x-E-x-G-x-G-F 5: 48.5406 8( 8) R-x-S-A-R-E-T-x(2)-R-V-A-x(0,2)-A-x-A-x(1,2)-K 6: 45.8706 8( 8) R-E-T-x(2)-R-V-A-x-G-A-x-A-x-K-x-L 7: 45.3706 8( 8) A-x(0,1)-E-T-x(2)-R-V-A-x-G-A-x-A-x-K-x-L 8: 44.8706 9( 8) A-x(1,3)-E-T-x(2)-R-V-A-x-G-A-x-A-x-K-x-L 9: 44.8706 8( 8) R-x(1,3)-E-x-D-x(3)-I-x-S-G-x(5)-T-x-G-x(2)-I-x(5)-N-x-D 10: 44.3706 8( 8) S-A-R-E-T-x(2)-R-V-A-x(0,2)-A-x-A-x(1,2)-K 11: 41.7005 8( 8) L-x(4)-A-x-A-x(5)-A-x-K-G-x-E-x-G-x-G-F 12: 41.7005 8( 8) E-x-D-x(3)-I-x-S-G-x(5)-T-x-G-x(2)-I-x(5)-N-x-D 13: 41.2005 8( 8) E-x(0,1)-D-x(3)-I-x-S-G-x(5)-T-x-G-x(2)-I-x(5)-N-x-D 14: 40.7005 8( 8) E-x(0,1)-D-x(3,4)-I-x-S-G-x(5)-T-x-G-x(2)-I-x(5)-N-x-D 15: 40.2005 8( 8) A-R-E-T-x(2)-R-V-A-x(0,2)-A-x-A-x(1,2)-K 16: 40.2005 15( 8) S-x(0,1)-A-R-E-T-x(2)-R-V-A-x(0,2)-A-x-A 17: 37.5305 8( 8) T-x(2)-R-V-A-x-G-A-x-A-x-K-x-L 18: 37.5305 8( 8) E-x(3)-R-V-A-x-G-A-x-A-x-K-x-L 19: 37.5305 8( 8) D-x(3)-I-x-S-G-x(5)-T-x-G-x(2)-I-x(5)-N-x-D 20: 37.0305 9( 8) T-x(1,2)-R-V-A-x-G-A-x-A-x-K-x-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 112.3357 8( 8) P-x-G-[LV]-G-x(4,5)-D-x(1,2)-L-[DE]-[AS]-x-[IL]-A-x-A-x-[LM]-[GS]-[IL]-[NP]-A-x-K-G-[FV]-E-[FI]-G-x-G-F-[ADENQS]-[AGV]-[ATV]-x(3)-G-S-x(3)-D-[EP] B 2: 102.9898 8( 8) G-x(4,5)-D-x(1,2)-L-[DE]-[AS]-x-[IL]-A-x-A-x-[LM]-[GS]-[IL]-[NP]-A-x-K-G-[FV]-E-[FI]-G-x-G-F-[ADENQS]-[AGV]-[ATV]-x(3)-G-S-x(3)-D-[EP]-x(3)-[DENQ] C 3: 95.6497 8( 8) L-[DE]-[AS]-x-[IL]-A-x-A-x-[LM]-[GS]-[IL]-[NP]-A-x-K-G-[FV]-E-[FI]-G-x-G-F-[ADENQS]-[AGV]-[ATV]-x(3)-G-S-x(3)-D-[EP]-x(3)-[DENQ] D 4: 72.7989 8( 8) R-x(1,3)-E-x-D-x-[ACV]-x-I-x-S-G-[TV]-x(2)-[AG]-x-T-x-G-[ST]-[PS]-I-x-[ILM]-x-[IV]-x-N-x-D-x-[KR]-x(2)-[DT] E 5: 71.7172 8( 8) R-[AS]-S-A-R-E-T-x(2)-R-V-A-x(0,2)-A-[GI]-A-x(1,2)-K-x-[IL]-x(4)-[AGN]-[GIV]-x(3)-[AGLV]-x(3)-[QS]-x-[AGQ] F 6: 69.6289 8( 8) E-x-D-x-[ACV]-x-I-x-S-G-[TV]-x(2)-[AG]-x-T-x-G-[ST]-[PS]-I-x-[ILM]-x-[IV]-x-N-x-D-x-[KR]-x(2)-[DT] G 7: 69.1289 8( 8) E-x(0,1)-D-x-[ACV]-x-I-x-S-G-[TV]-x(2)-[AG]-x-T-x-G-[ST]-[PS]-I-x-[ILM]-x-[IV]-x-N-x-D-x-[KR]-x(2)-[DT] H 8: 69.1072 8( 8) R-x(0,1)-S-x(0,1)-A-R-E-T-x(2)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] I 9: 65.9467 8( 8) E-x(0,1)-D-x(3,4)-I-x-S-G-[TV]-x(2)-[AG]-x-T-x-G-[ST]-[PS]-I-x-[ILM]-x-[IV]-x-N-x-D-x-[KR]-x(2)-[DT] J 10: 65.4588 8( 8) D-x-[ACV]-x-I-x-S-G-[TV]-x(2)-[AG]-x-T-x-G-[ST]-[PS]-I-x-[ILM]-x-[IV]-x-N-x-D-x-[KR]-x(2)-[DT] K 11: 65.4371 15( 8) S-x(0,1)-A-R-E-T-x(2)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] L 12: 64.3680 8( 8) S-A-R-E-T-x(2)-R-V-A-x(0,2)-A-[GI]-A-x(1,2)-K-x-[IL]-x(4)-[AGN]-[GIV]-x(3)-[AGLV]-x(3)-[QS]-x-[AGQ] M 13: 60.1980 8( 8) A-R-E-T-x(2)-R-V-A-x(0,2)-A-[GI]-A-x(1,2)-K-x-[IL]-x(4)-[AGN]-[GIV]-x(3)-[AGLV]-x(3)-[QS]-x-[AGQ] N 14: 57.5970 8( 8) R-E-T-x(2)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] O 15: 57.0970 8( 8) A-x(0,1)-E-T-x(2)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] P 16: 56.5970 9( 8) A-x(1,3)-E-T-x(2)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] Q 17: 49.2569 8( 8) T-x(2)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] R 18: 49.2569 8( 8) E-x(3)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] S 19: 48.7569 9( 8) T-x(1,2)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] T 20: 43.8796 8( 8) R-[AS]-S-A-R-E-T-x(2)-R-V-A-x(0,2)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 112.3357 8( 8) P-x-G-[LV]-G-x(4,5)-D-x(1,2)-L-[DE]-[AS]-x-[IL]-A-x-A-x-[LM]-[GS]-[IL]-[NP]-A-x-K-G-[FV]-E-[FI]-G-x-G-F-[ADENQS]-[AGV]-[ATV]-x(3)-G-S-x(3)-D-[EP] Occurences: 8(8) AROC_BACSU : 228- 277: ivegm PvGVGsyvhyDrkLDSkLAaAvLSINAfKGVEFGiGFEAAgrnGSevhDE iiwde AROC_CORSE : 279- 326: imrnv PrGLGspvf-Dk-LEAeLAkAcMSLPAtKGFEFGsGFSGTfltGSehnDE fytde AROC_ECOLI : 214- 261: vasgv PaGLGepvf-Dr-LDAdIAhAlMSINAvKGVEIGdGFDVValrGSqnrDE itkdg AROC_HAEIN : 220- 267: iaenv PvGLGepvf-Dr-LDAdLAhAlMGINAvKGVEIGdGFAVVeqrGSehrDE mtpng AROC_SALTI : 214- 261: masgv PaGLGepvf-Dr-LDAdIAhAlMSINAvKGVEIGeGFNVValrGSqnrDE itaqg AROC_SYNY3 : 218- 265: airna PkGLGepvf-Dk-LEAdLAkAmMSLPAtKGFEFGsGFAGTlltGSqhnDE yylde AROC_VIBAN : 226- 273: vatnl PvGLGepvf-Dr-LDAdIAhAlMSINAvKGVEIGdGFDVVqqkGSqhrDP ltpng AROC_YEAST : 227- 274: vvrnl PtGLGepcf-Dk-LEAmLAhAmLSIPAsKGFEIGsGFQGVsvpGSkhnDP fyfek B 2: 102.9898 8( 8) G-x(4,5)-D-x(1,2)-L-[DE]-[AS]-x-[IL]-A-x-A-x-[LM]-[GS]-[IL]-[NP]-A-x-K-G-[FV]-E-[FI]-G-x-G-F-[ADENQS]-[AGV]-[ATV]-x(3)-G-S-x(3)-D-[EP]-x(3)-[DENQ] Occurences: 8(8) AROC_BACSU : 232- 281: mpvgv GsyvhyDrkLDSkLAaAvLSINAfKGVEFGiGFEAAgrnGSevhDEiiwD eekgy AROC_CORSE : 283- 330: vprgl Gspvf-Dk-LEAeLAkAcMSLPAtKGFEFGsGFSGTfltGSehnDEfytD engri AROC_ECOLI : 218- 265: vpagl Gepvf-Dr-LDAdIAhAlMSINAvKGVEIGdGFDVValrGSqnrDEitkD gfqsn AROC_HAEIN : 224- 271: vpvgl Gepvf-Dr-LDAdLAhAlMGINAvKGVEIGdGFAVVeqrGSehrDEmtpN gfesn AROC_SALTI : 218- 265: vpagl Gepvf-Dr-LDAdIAhAlMSINAvKGVEIGeGFNVValrGSqnrDEitaQ gfqsn AROC_SYNY3 : 222- 269: apkgl Gepvf-Dk-LEAdLAkAmMSLPAtKGFEFGsGFAGTlltGSqhnDEyylD eagew AROC_VIBAN : 230- 277: lpvgl Gepvf-Dr-LDAdIAhAlMSINAvKGVEIGdGFDVVqqkGSqhrDPltpN gfrsn AROC_YEAST : 231- 278: lptgl Gepcf-Dk-LEAmLAhAmLSIPAsKGFEIGsGFQGVsvpGSkhnDPfyfE ketnr C 3: 95.6497 8( 8) L-[DE]-[AS]-x-[IL]-A-x-A-x-[LM]-[GS]-[IL]-[NP]-A-x-K-G-[FV]-E-[FI]-G-x-G-F-[ADENQS]-[AGV]-[ATV]-x(3)-G-S-x(3)-D-[EP]-x(3)-[DENQ] Occurences: 8(8) AROC_BACSU : 241- 281: hydrk LDSkLAaAvLSINAfKGVEFGiGFEAAgrnGSevhDEiiwD eekgy AROC_CORSE : 290- 330: pvfdk LEAeLAkAcMSLPAtKGFEFGsGFSGTfltGSehnDEfytD engri AROC_ECOLI : 225- 265: pvfdr LDAdIAhAlMSINAvKGVEIGdGFDVValrGSqnrDEitkD gfqsn AROC_HAEIN : 231- 271: pvfdr LDAdLAhAlMGINAvKGVEIGdGFAVVeqrGSehrDEmtpN gfesn AROC_SALTI : 225- 265: pvfdr LDAdIAhAlMSINAvKGVEIGeGFNVValrGSqnrDEitaQ gfqsn AROC_SYNY3 : 229- 269: pvfdk LEAdLAkAmMSLPAtKGFEFGsGFAGTlltGSqhnDEyylD eagew AROC_VIBAN : 237- 277: pvfdr LDAdIAhAlMSINAvKGVEIGdGFDVVqqkGSqhrDPltpN gfrsn AROC_YEAST : 238- 278: pcfdk LEAmLAhAmLSIPAsKGFEIGsGFQGVsvpGSkhnDPfyfE ketnr D 4: 72.7989 8( 8) R-x(1,3)-E-x-D-x-[ACV]-x-I-x-S-G-[TV]-x(2)-[AG]-x-T-x-G-[ST]-[PS]-I-x-[ILM]-x-[IV]-x-N-x-D-x-[KR]-x(2)-[DT] Occurences: 8(8) AROC_BACSU : 48- 85: hgrgr RmqiEkDqAkImSGVrhArTlGSPIaLvVeNnDwKhwT kimga AROC_CORSE : 116- 151: rittp Rk--EtDtCkIySGVadGfTtGSPIhIsVpNtDqRgnD ysema AROC_ECOLI : 58- 93: ryttq Rr--EpDqVkIlSGVfeGvTtGTSIgLlIeNtDqRsqD ysaik AROC_HAEIN : 59- 94: ryttp Rr--EdDeVqIlSGVfeGkTtGTSIgMiIkNgDqRsqD ygdik AROC_SALTI : 58- 93: ryttq Rr--EpDqVkIlSGVfdGvTtGTSIgLlIeNtDqRsqD ysaik AROC_SYNY3 : 58- 93: kittp Rk--EaDqCeIlSGVfeGkTlGTPIaIlVrNkDaRsqD ynema AROC_VIBAN : 70- 105: ryttq Rr--EaDeVkIlSGVfeGkTtGTSIgLlIeNtDqRstD ysdik AROC_YEAST : 57- 92: klstp Rd--EkDrVeIqSGTefGkTlGTPIaMmIkNeDqRphD ysdmd E 5: 71.7172 8( 8) R-[AS]-S-A-R-E-T-x(2)-R-V-A-x(0,2)-A-[GI]-A-x(1,2)-K-x-[IL]-x(4)-[AGN]-[GIV]-x(3)-[AGLV]-x(3)-[QS]-x-[AGQ] Occurences: 8(8) AROC_BACSU : 132- 167: rnvle RSSARETtvRVA--AGAvaKkIlselGIkvaGhvlQiG avkae AROC_CORSE : 182- 217: vqggg RSSARETigRVA--AGAlaKkIlkayAGtevLayvSqA hkvvl AROC_ECOLI : 124- 160: yrggg RSSARETamRVAagAIAk-KyLaekfGIeirGcltQmG dipld AROC_HAEIN : 125- 161: yrggg RSSARETamRVAagAIAk-KyLrehfGIevrGflsQiG nikia AROC_SALTI : 124- 160: yrggg RSSARETamRVAagAIAk-KyLaekfGIeirGcltQmG diple AROC_SYNY3 : 124- 160: wqggg RSSARETigRVAagAIAk-KiLaqfnGVeivAyvkSiQ dieat AROC_VIBAN : 136- 172: yrggg RSSARETamRVAagAIAk-KyLkqefGVeirAylsQmG dvcid AROC_YEAST : 123- 159: ssggg RASARETigRVAsgAIAe-KfLaqnsNVeivAfvtQiG eikmn F 6: 69.6289 8( 8) E-x-D-x-[ACV]-x-I-x-S-G-[TV]-x(2)-[AG]-x-T-x-G-[ST]-[PS]-I-x-[ILM]-x-[IV]-x-N-x-D-x-[KR]-x(2)-[DT] Occurences: 8(8) AROC_BACSU : 52- 85: rrmqi EkDqAkImSGVrhArTlGSPIaLvVeNnDwKhwT kimga AROC_CORSE : 118- 151: ttprk EtDtCkIySGVadGfTtGSPIhIsVpNtDqRgnD ysema AROC_ECOLI : 60- 93: ttqrr EpDqVkIlSGVfeGvTtGTSIgLlIeNtDqRsqD ysaik AROC_HAEIN : 61- 94: ttprr EdDeVqIlSGVfeGkTtGTSIgMiIkNgDqRsqD ygdik AROC_SALTI : 60- 93: ttqrr EpDqVkIlSGVfdGvTtGTSIgLlIeNtDqRsqD ysaik AROC_SYNY3 : 60- 93: ttprk EaDqCeIlSGVfeGkTlGTPIaIlVrNkDaRsqD ynema AROC_VIBAN : 72- 105: ttqrr EaDeVkIlSGVfeGkTtGTSIgLlIeNtDqRstD ysdik AROC_YEAST : 59- 92: stprd EkDrVeIqSGTefGkTlGTPIaMmIkNeDqRphD ysdmd G 7: 69.1289 8( 8) E-x(0,1)-D-x-[ACV]-x-I-x-S-G-[TV]-x(2)-[AG]-x-T-x-G-[ST]-[PS]-I-x-[ILM]-x-[IV]-x-N-x-D-x-[KR]-x(2)-[DT] Occurences: 8(8) AROC_BACSU : 52- 85: rrmqi EkDqAkImSGVrhArTlGSPIaLvVeNnDwKhwT kimga AROC_CORSE : 118- 151: ttprk EtDtCkIySGVadGfTtGSPIhIsVpNtDqRgnD ysema AROC_ECOLI : 60- 93: ttqrr EpDqVkIlSGVfeGvTtGTSIgLlIeNtDqRsqD ysaik AROC_HAEIN : 61- 94: ttprr EdDeVqIlSGVfeGkTtGTSIgMiIkNgDqRsqD ygdik AROC_SALTI : 60- 93: ttqrr EpDqVkIlSGVfdGvTtGTSIgLlIeNtDqRsqD ysaik AROC_SYNY3 : 60- 93: ttprk EaDqCeIlSGVfeGkTlGTPIaIlVrNkDaRsqD ynema AROC_VIBAN : 72- 105: ttqrr EaDeVkIlSGVfeGkTtGTSIgLlIeNtDqRstD ysdik AROC_YEAST : 59- 92: stprd EkDrVeIqSGTefGkTlGTPIaMmIkNeDqRphD ysdmd H 8: 69.1072 8( 8) R-x(0,1)-S-x(0,1)-A-R-E-T-x(2)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] Occurences: 8(8) AROC_BACSU : 132- 154: rnvle RsS-ARETtvRVAAGAVAKKiLsE lgikv AROC_BACSU : 132- 154: rnvle R-SsARETtvRVAAGAVAKKiLsE lgikv AROC_CORSE : 182- 204: vqggg RsS-ARETigRVAAGALAKKiLkA yagte AROC_CORSE : 182- 204: vqggg R-SsARETigRVAAGALAKKiLkA yagte AROC_ECOLI : 124- 146: yrggg RsS-ARETamRVAAGAIAKKyLaE kfgie AROC_ECOLI : 124- 146: yrggg R-SsARETamRVAAGAIAKKyLaE kfgie AROC_HAEIN : 125- 147: yrggg RsS-ARETamRVAAGAIAKKyLrE hfgie AROC_HAEIN : 125- 147: yrggg R-SsARETamRVAAGAIAKKyLrE hfgie AROC_SALTI : 124- 146: yrggg RsS-ARETamRVAAGAIAKKyLaE kfgie AROC_SALTI : 124- 146: yrggg R-SsARETamRVAAGAIAKKyLaE kfgie AROC_SYNY3 : 124- 146: wqggg RsS-ARETigRVAAGAIAKKiLaQ fngve AROC_SYNY3 : 124- 146: wqggg R-SsARETigRVAAGAIAKKiLaQ fngve AROC_VIBAN : 136- 158: yrggg RsS-ARETamRVAAGAIAKKyLkQ efgve AROC_VIBAN : 136- 158: yrggg R-SsARETamRVAAGAIAKKyLkQ efgve AROC_YEAST : 123- 145: ssggg RaS-ARETigRVASGAIAEKfLaQ nsnve I 9: 65.9467 8( 8) E-x(0,1)-D-x(3,4)-I-x-S-G-[TV]-x(2)-[AG]-x-T-x-G-[ST]-[PS]-I-x-[ILM]-x-[IV]-x-N-x-D-x-[KR]-x(2)-[DT] Occurences: 8(8) AROC_BACSU : 52- 85: rrmqi EkDqak-ImSGVrhArTlGSPIaLvVeNnDwKhwT kimga AROC_CORSE : 118- 151: ttprk EtDtck-IySGVadGfTtGSPIhIsVpNtDqRgnD ysema AROC_ECOLI : 60- 93: ttqrr EpDqvk-IlSGVfeGvTtGTSIgLlIeNtDqRsqD ysaik AROC_HAEIN : 61- 94: ttprr EdDevq-IlSGVfeGkTtGTSIgMiIkNgDqRsqD ygdik AROC_HAEIN : 61- 94: ttprr E-DdevqIlSGVfeGkTtGTSIgMiIkNgDqRsqD ygdik AROC_SALTI : 60- 93: ttqrr EpDqvk-IlSGVfdGvTtGTSIgLlIeNtDqRsqD ysaik AROC_SYNY3 : 60- 93: ttprk EaDqce-IlSGVfeGkTlGTPIaIlVrNkDaRsqD ynema AROC_VIBAN : 72- 105: ttqrr EaDevk-IlSGVfeGkTtGTSIgLlIeNtDqRstD ysdik AROC_YEAST : 59- 92: stprd EkDrve-IqSGTefGkTlGTPIaMmIkNeDqRphD ysdmd J 10: 65.4588 8( 8) D-x-[ACV]-x-I-x-S-G-[TV]-x(2)-[AG]-x-T-x-G-[ST]-[PS]-I-x-[ILM]-x-[IV]-x-N-x-D-x-[KR]-x(2)-[DT] Occurences: 8(8) AROC_BACSU : 54- 85: mqiek DqAkImSGVrhArTlGSPIaLvVeNnDwKhwT kimga AROC_CORSE : 120- 151: prket DtCkIySGVadGfTtGSPIhIsVpNtDqRgnD ysema AROC_ECOLI : 62- 93: qrrep DqVkIlSGVfeGvTtGTSIgLlIeNtDqRsqD ysaik AROC_HAEIN : 63- 94: prred DeVqIlSGVfeGkTtGTSIgMiIkNgDqRsqD ygdik AROC_SALTI : 62- 93: qrrep DqVkIlSGVfdGvTtGTSIgLlIeNtDqRsqD ysaik AROC_SYNY3 : 62- 93: prkea DqCeIlSGVfeGkTlGTPIaIlVrNkDaRsqD ynema AROC_VIBAN : 74- 105: qrrea DeVkIlSGVfeGkTtGTSIgLlIeNtDqRstD ysdik AROC_YEAST : 61- 92: prdek DrVeIqSGTefGkTlGTPIaMmIkNeDqRphD ysdmd K 11: 65.4371 15( 8) S-x(0,1)-A-R-E-T-x(2)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] Occurences: 15(8) AROC_BACSU : 133- 154: nvler SsARETtvRVAAGAVAKKiLsE lgikv AROC_BACSU : 134- 154: vlers S-ARETtvRVAAGAVAKKiLsE lgikv AROC_CORSE : 183- 204: qgggr SsARETigRVAAGALAKKiLkA yagte AROC_CORSE : 184- 204: gggrs S-ARETigRVAAGALAKKiLkA yagte AROC_ECOLI : 125- 146: rgggr SsARETamRVAAGAIAKKyLaE kfgie AROC_ECOLI : 126- 146: gggrs S-ARETamRVAAGAIAKKyLaE kfgie AROC_HAEIN : 126- 147: rgggr SsARETamRVAAGAIAKKyLrE hfgie AROC_HAEIN : 127- 147: gggrs S-ARETamRVAAGAIAKKyLrE hfgie AROC_SALTI : 125- 146: rgggr SsARETamRVAAGAIAKKyLaE kfgie AROC_SALTI : 126- 146: gggrs S-ARETamRVAAGAIAKKyLaE kfgie AROC_SYNY3 : 125- 146: qgggr SsARETigRVAAGAIAKKiLaQ fngve AROC_SYNY3 : 126- 146: gggrs S-ARETigRVAAGAIAKKiLaQ fngve AROC_VIBAN : 137- 158: rgggr SsARETamRVAAGAIAKKyLkQ efgve AROC_VIBAN : 138- 158: gggrs S-ARETamRVAAGAIAKKyLkQ efgve AROC_YEAST : 125- 145: gggra S-ARETigRVASGAIAEKfLaQ nsnve L 12: 64.3680 8( 8) S-A-R-E-T-x(2)-R-V-A-x(0,2)-A-[GI]-A-x(1,2)-K-x-[IL]-x(4)-[AGN]-[GIV]-x(3)-[AGLV]-x(3)-[QS]-x-[AGQ] Occurences: 8(8) AROC_BACSU : 134- 167: vlers SARETtvRVA--AGAvaKkIlselGIkvaGhvlQiG avkae AROC_CORSE : 184- 217: gggrs SARETigRVA--AGAlaKkIlkayAGtevLayvSqA hkvvl AROC_ECOLI : 126- 160: gggrs SARETamRVAagAIAk-KyLaekfGIeirGcltQmG dipld AROC_HAEIN : 127- 161: gggrs SARETamRVAagAIAk-KyLrehfGIevrGflsQiG nikia AROC_SALTI : 126- 160: gggrs SARETamRVAagAIAk-KyLaekfGIeirGcltQmG diple AROC_SYNY3 : 126- 160: gggrs SARETigRVAagAIAk-KiLaqfnGVeivAyvkSiQ dieat AROC_VIBAN : 138- 172: gggrs SARETamRVAagAIAk-KyLkqefGVeirAylsQmG dvcid AROC_YEAST : 125- 159: gggra SARETigRVAsgAIAe-KfLaqnsNVeivAfvtQiG eikmn M 13: 60.1980 8( 8) A-R-E-T-x(2)-R-V-A-x(0,2)-A-[GI]-A-x(1,2)-K-x-[IL]-x(4)-[AGN]-[GIV]-x(3)-[AGLV]-x(3)-[QS]-x-[AGQ] Occurences: 8(8) AROC_BACSU : 135- 167: lerss ARETtvRVA--AGAvaKkIlselGIkvaGhvlQiG avkae AROC_CORSE : 185- 217: ggrss ARETigRVA--AGAlaKkIlkayAGtevLayvSqA hkvvl AROC_ECOLI : 127- 160: ggrss ARETamRVAagAIAk-KyLaekfGIeirGcltQmG dipld AROC_HAEIN : 128- 161: ggrss ARETamRVAagAIAk-KyLrehfGIevrGflsQiG nikia AROC_SALTI : 127- 160: ggrss ARETamRVAagAIAk-KyLaekfGIeirGcltQmG diple AROC_SYNY3 : 127- 160: ggrss ARETigRVAagAIAk-KiLaqfnGVeivAyvkSiQ dieat AROC_VIBAN : 139- 172: ggrss ARETamRVAagAIAk-KyLkqefGVeirAylsQmG dvcid AROC_YEAST : 126- 159: ggras ARETigRVAsgAIAe-KfLaqnsNVeivAfvtQiG eikmn N 14: 57.5970 8( 8) R-E-T-x(2)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] Occurences: 8(8) AROC_BACSU : 136- 154: erssa RETtvRVAAGAVAKKiLsE lgikv AROC_CORSE : 186- 204: grssa RETigRVAAGALAKKiLkA yagte AROC_ECOLI : 128- 146: grssa RETamRVAAGAIAKKyLaE kfgie AROC_HAEIN : 129- 147: grssa RETamRVAAGAIAKKyLrE hfgie AROC_SALTI : 128- 146: grssa RETamRVAAGAIAKKyLaE kfgie AROC_SYNY3 : 128- 146: grssa RETigRVAAGAIAKKiLaQ fngve AROC_VIBAN : 140- 158: grssa RETamRVAAGAIAKKyLkQ efgve AROC_YEAST : 127- 145: grasa RETigRVASGAIAEKfLaQ nsnve O 15: 57.0970 8( 8) A-x(0,1)-E-T-x(2)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] Occurences: 8(8) AROC_BACSU : 135- 154: lerss ArETtvRVAAGAVAKKiLsE lgikv AROC_CORSE : 185- 204: ggrss ArETigRVAAGALAKKiLkA yagte AROC_ECOLI : 127- 146: ggrss ArETamRVAAGAIAKKyLaE kfgie AROC_HAEIN : 128- 147: ggrss ArETamRVAAGAIAKKyLrE hfgie AROC_SALTI : 127- 146: ggrss ArETamRVAAGAIAKKyLaE kfgie AROC_SYNY3 : 127- 146: ggrss ArETigRVAAGAIAKKiLaQ fngve AROC_VIBAN : 139- 158: ggrss ArETamRVAAGAIAKKyLkQ efgve AROC_YEAST : 126- 145: ggras ArETigRVASGAIAEKfLaQ nsnve P 16: 56.5970 9( 8) A-x(1,3)-E-T-x(2)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] Occurences: 9(8) AROC_BACSU : 135- 154: lerss Ar--ETtvRVAAGAVAKKiLsE lgikv AROC_CORSE : 185- 204: ggrss Ar--ETigRVAAGALAKKiLkA yagte AROC_ECOLI : 127- 146: ggrss Ar--ETamRVAAGAIAKKyLaE kfgie AROC_HAEIN : 128- 147: ggrss Ar--ETamRVAAGAIAKKyLrE hfgie AROC_SALTI : 127- 146: ggrss Ar--ETamRVAAGAIAKKyLaE kfgie AROC_SYNY3 : 127- 146: ggrss Ar--ETigRVAAGAIAKKiLaQ fngve AROC_VIBAN : 139- 158: ggrss Ar--ETamRVAAGAIAKKyLkQ efgve AROC_YEAST : 124- 145: sgggr AsarETigRVASGAIAEKfLaQ nsnve AROC_YEAST : 126- 145: ggras Ar--ETigRVASGAIAEKfLaQ nsnve Q 17: 49.2569 8( 8) T-x(2)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] Occurences: 8(8) AROC_BACSU : 138- 154: ssare TtvRVAAGAVAKKiLsE lgikv AROC_CORSE : 188- 204: ssare TigRVAAGALAKKiLkA yagte AROC_ECOLI : 130- 146: ssare TamRVAAGAIAKKyLaE kfgie AROC_HAEIN : 131- 147: ssare TamRVAAGAIAKKyLrE hfgie AROC_SALTI : 130- 146: ssare TamRVAAGAIAKKyLaE kfgie AROC_SYNY3 : 130- 146: ssare TigRVAAGAIAKKiLaQ fngve AROC_VIBAN : 142- 158: ssare TamRVAAGAIAKKyLkQ efgve AROC_YEAST : 129- 145: asare TigRVASGAIAEKfLaQ nsnve R 18: 49.2569 8( 8) E-x(3)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] Occurences: 8(8) AROC_BACSU : 137- 154: rssar EttvRVAAGAVAKKiLsE lgikv AROC_CORSE : 187- 204: rssar EtigRVAAGALAKKiLkA yagte AROC_ECOLI : 129- 146: rssar EtamRVAAGAIAKKyLaE kfgie AROC_HAEIN : 130- 147: rssar EtamRVAAGAIAKKyLrE hfgie AROC_SALTI : 129- 146: rssar EtamRVAAGAIAKKyLaE kfgie AROC_SYNY3 : 129- 146: rssar EtigRVAAGAIAKKiLaQ fngve AROC_VIBAN : 141- 158: rssar EtamRVAAGAIAKKyLkQ efgve AROC_YEAST : 128- 145: rasar EtigRVASGAIAEKfLaQ nsnve S 19: 48.7569 9( 8) T-x(1,2)-R-V-A-[AS]-G-A-[ILV]-A-[EK]-K-x-L-x-[AEQ] Occurences: 9(8) AROC_BACSU : 138- 154: ssare TtvRVAAGAVAKKiLsE lgikv AROC_BACSU : 139- 154: saret Tv-RVAAGAVAKKiLsE lgikv AROC_CORSE : 188- 204: ssare TigRVAAGALAKKiLkA yagte AROC_ECOLI : 130- 146: ssare TamRVAAGAIAKKyLaE kfgie AROC_HAEIN : 131- 147: ssare TamRVAAGAIAKKyLrE hfgie AROC_SALTI : 130- 146: ssare TamRVAAGAIAKKyLaE kfgie AROC_SYNY3 : 130- 146: ssare TigRVAAGAIAKKiLaQ fngve AROC_VIBAN : 142- 158: ssare TamRVAAGAIAKKyLkQ efgve AROC_YEAST : 129- 145: asare TigRVASGAIAEKfLaQ nsnve T 20: 43.8796 8( 8) R-[AS]-S-A-R-E-T-x(2)-R-V-A-x(0,2)-A Occurences: 8(8) AROC_BACSU : 132- 146: rnvle RSSARETtvRVAagA vakki AROC_CORSE : 182- 196: vqggg RSSARETigRVAagA lakki AROC_ECOLI : 124- 138: yrggg RSSARETamRVAagA iakky AROC_HAEIN : 125- 139: yrggg RSSARETamRVAagA iakky AROC_SALTI : 124- 138: yrggg RSSARETamRVAagA iakky AROC_SYNY3 : 124- 138: wqggg RSSARETigRVAagA iakki AROC_VIBAN : 136- 150: yrggg RSSARETamRVAagA iakky AROC_YEAST : 123- 137: ssggg RASARETigRVAsgA iaekf Number of patterns evaluated by Pratt:14719 Total running time: 7 seconds