------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 40 sequences from file CHITINASE_19_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 40 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CHITINASE_19_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AGI_URTDI 372 CHI1_CASSA 35 CHI1_HORVU 178 CHI1_ORYSA 318 CHI1_PEA 15 CHI1_TOBAC 329 CHI2_ARAHY 46 CHI2_BRANA 322 CHI2_HORVU 266 CHI2_ORYSA 336 CHI2_PEA 16 CHI2_TOBAC 324 CHI3_ARAHY 46 CHI3_TOBAC 334 CHI4_ARAHY 46 CHI4_BRANA 268 CHI4_PHAVU 270 CHI5_PHAVU 327 CHI6_POPTR 214 CHI8_POPTR 316 CHIA_ARAHY 46 CHIA_LYCES 253 CHIA_MAIZE 280 CHIB_ARAHY 46 CHIB_LYCES 247 CHIB_MAIZE 269 CHIB_PEA 23 CHIB_POPTR 305 CHIC_LYCES 322 CHIC_POPTR 121 CHID_LYCES 246 CHIP_TOBAC 253 CHIQ_TOBAC 253 CHIT_ARATH 322 CHIT_DIOJA 250 CHIT_PETHY 254 CHIT_PHAVU 328 CHIT_SOLTU 328 CHIX_PEA 320 IAMY_COILA 133 Pratt run started at Thu Feb 6 19:07:06 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 7.8401 338( 40) G-x(0,1)-G 2: 7.3401 471( 40) G-x(1,3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 9.5823 178( 40) G-x(1,3)-G-x(4)-[GIPV] B 2: 7.8401 338( 40) G-x(0,1)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 9.5823 178( 40) G-x(1,3)-G-x(4)-[GIPV] Occurences: 178(40) AGI_URTDI : 27- 36: saqrc GsqgGggtcP alwcc AGI_URTDI : 73- 82: sdhrc GaavGnppcG qdrcc CHI1_CASSA : 3- 10: ac Gg--GggdvG slisa CHI1_HORVU : 61- 69: hnyny Gpa-GraigV dllrn CHI1_HORVU : 125- 132: agrvp Gf--GvitnI vnggi CHI1_HORVU : 140- 147: ggiec Gh--GqdsrV adrig CHI1_ORYSA : 18- 27: vvavr GeqcGsqagG alcpn CHI1_ORYSA : 22- 31: rgeqc GsqaGgalcP nclcc CHI1_ORYSA : 59- 67: qsqcs Ggc-GggptP pssgg CHI1_ORYSA : 59- 68: qsqcs GgcgGgptpP ssggg CHI1_ORYSA : 60- 67: sqcsg Gc--GggptP pssgg CHI1_ORYSA : 60- 68: sqcsg Gcg-GgptpP ssggg CHI1_ORYSA : 71- 80: tppss GggsGvasiI spslf CHI1_ORYSA : 72- 80: ppssg Ggs-GvasiI spslf CHI1_ORYSA : 73- 80: pssgg Gs--GvasiI spslf CHI1_ORYSA : 263- 270: agrvp Gy--GeitnI inggv CHI1_ORYSA : 278- 285: ggvec Gh--GaddkV adrig CHI1_PEA : 4- 13: eqc GnqaGgxvpP ng CHI1_TOBAC : 27- 36: saeqc GsqaGgarcP sglcc CHI1_TOBAC : 76- 83: pptpp Gg--GdlgsI isssm CHI1_TOBAC : 169- 177: wlreq Gsp-GdyctP sgqwp CHI1_TOBAC : 204- 212: hnyny Gpc-GraigV dllnn CHI1_TOBAC : 268- 275: anrlp Gf--GvitnI inggl CHI1_TOBAC : 283- 290: gglec Gr--GtdsrV qdrig CHI2_ARAHY : 32- 39: anrtl Gf--GlvtnI inggl CHI2_BRANA : 24- 33: laeqc GrqaGgalcP nglcc CHI2_BRANA : 66- 74: ggtpp Gpt-GdlsgI isrsq CHI2_BRANA : 259- 266: agrvp Gy--GvitnI inggl CHI2_BRANA : 274- 281: gglec Gr--GqdarV adrig CHI2_HORVU : 19- 28: vamai GtarGsvssI vsraq CHI2_HORVU : 149- 157: hnyny Gpa-GraigV dllan CHI2_HORVU : 213- 220: agrvp Gf--GvitnI inggi CHI2_HORVU : 228- 235: ggiec Gh--GqdsrV adrig CHI2_ORYSA : 25- 34: haeqc GsqaGgavcP nclcc CHI2_ORYSA : 73- 82: pdasg GggsGvasiV srslf CHI2_ORYSA : 74- 82: dasgg Ggs-GvasiV srslf CHI2_ORYSA : 75- 82: asggg Gs--GvasiV srslf CHI2_ORYSA : 206- 215: nygpa GqaiGadllG dpdlv CHI2_ORYSA : 267- 274: agrvp Gy--GvitnI inggl CHI2_ORYSA : 282- 289: gglec Gh--GeddrI adrig CHI2_PEA : 4- 13: eqc GtqaGgalcP ggl CHI2_TOBAC : 71- 78: gptpp Gg--GdlgsI isssm CHI2_TOBAC : 164- 172: wlreq Gsp-GdyctP sgqwp CHI2_TOBAC : 199- 207: hnyny Gpc-GraigV dllnn CHI2_TOBAC : 263- 270: anrlp Gf--GvitnI inggl CHI2_TOBAC : 278- 285: gglec Gr--GtdsrV qdrig CHI3_ARAHY : 32- 39: agrvs Gf--GvitnI inggl CHI3_TOBAC : 27- 36: saeqc GkqaGgarcP sgmcc CHI3_TOBAC : 66- 73: sqcps Gp--GptprP ptptp CHI3_TOBAC : 79- 88: ptptp GpstGdisnI isssm CHI3_TOBAC : 273- 280: anrlp Gy--GvitnI inggl CHI3_TOBAC : 288- 295: gglec Gh--GsdarV qdrig CHI4_ARAHY : 32- 39: agrap Gy--GvitnI inggl CHI4_BRANA : 49- 56: tdayc Gt--GcrsgP crspg CHI4_BRANA : 51- 60: aycgt GcrsGpcrsP ggtps CHI4_BRANA : 68- 75: tpspp Gg--GsvgsI vtqaf CHI4_BRANA : 162- 169: ypcap Gk--GyfgrG piqls CHI4_BRANA : 256- 264: yrdyc Gql-GvdpgP nlsc CHI4_PHAVU : 41- 48: qygyc Gt--GedycG tgcqq CHI4_PHAVU : 48- 55: gedyc Gt--GcqqgP cttas CHI4_PHAVU : 191- 198: annfd Gl--GapetV sndvv CHI5_PHAVU : 26- 35: vggsy GeqcGrqagG alcpg CHI5_PHAVU : 30- 39: ygeqc GrqaGgalcP ggncc CHI5_PHAVU : 198- 206: wnyny Gqc-GraigV dllnk CHI5_PHAVU : 262- 269: arrlp Gy--GtvtnI inggl CHI5_PHAVU : 277- 284: gglec Gr--GqdsrV qdrig CHI6_POPTR : 150- 157: agrvp Gy--GvitnI inggi CHI8_POPTR : 27- 36: dtaqc GsqaGnatcP ndlcc CHI8_POPTR : 252- 259: agrkp Gf--GmltnI itngg CHIA_ARAHY : 32- 39: agrvs Gf--GvitnI inggl CHIA_LYCES : 95- 104: shetn GgsaGtftgG ycfvk CHIA_LYCES : 96- 104: hetng Gsa-GtftgG ycfvk CHIA_LYCES : 99- 108: nggsa GtftGgycfV kqieq CHIA_LYCES : 198- 205: anrvp Gy--GvitnI ingqf CHIA_MAIZE : 50- 57: tdayc Gd--GcqsgP crsgg CHIA_MAIZE : 52- 61: aycgd GcqsGpcrsG ggggg CHIA_MAIZE : 61- 68: gpcrs Gg--GggggG ggggg CHIA_MAIZE : 61- 69: gpcrs Ggg-GggggG ggggg CHIA_MAIZE : 61- 70: gpcrs GgggGggggG ggggs CHIA_MAIZE : 62- 69: pcrsg Gg--GggggG ggggg CHIA_MAIZE : 62- 70: pcrsg Ggg-GggggG ggggs CHIA_MAIZE : 62- 71: pcrsg GgggGggggG gggsg CHIA_MAIZE : 63- 70: crsgg Gg--GggggG ggggs CHIA_MAIZE : 63- 71: crsgg Ggg-GggggG gggsg CHIA_MAIZE : 63- 72: crsgg GgggGggggG ggsgg CHIA_MAIZE : 64- 71: rsggg Gg--GggggG gggsg CHIA_MAIZE : 64- 72: rsggg Ggg-GggggG ggsgg CHIA_MAIZE : 64- 73: rsggg GgggGggggG gsgga CHIA_MAIZE : 65- 72: sgggg Gg--GggggG ggsgg CHIA_MAIZE : 65- 73: sgggg Ggg-GggggG gsgga CHIA_MAIZE : 65- 74: sgggg GgggGggggG sggan CHIA_MAIZE : 66- 73: ggggg Gg--GggggG gsgga CHIA_MAIZE : 66- 74: ggggg Ggg-GggggG sggan CHIA_MAIZE : 67- 74: ggggg Gg--GggggG sggan CHIA_MAIZE : 67- 76: ggggg GgggGgggsG ganva CHIA_MAIZE : 68- 76: ggggg Ggg-GgggsG ganva CHIA_MAIZE : 68- 77: ggggg GgggGggsgG anvan CHIA_MAIZE : 69- 76: ggggg Gg--GgggsG ganva CHIA_MAIZE : 69- 77: ggggg Ggg-GggsgG anvan CHIA_MAIZE : 70- 77: ggggg Gg--GggsgG anvan CHIB_ARAHY : 32- 39: agrvs Gf--GvitnI inggl CHIB_LYCES : 94- 103: slsad GpfaGgycfV regnq CHIB_LYCES : 106- 115: cfvre GnqmGsgfyG rgpiq CHIB_LYCES : 110- 117: egnqm Gs--GfygrG piqlt CHIB_LYCES : 192- 199: anrqp Gy--GvitnI inggi CHIB_LYCES : 203- 212: niing GiecGkgqnP qvedr CHIB_LYCES : 207- 214: ggiec Gk--GqnpqV edrig CHIB_MAIZE : 45- 52: tdeyc Gd--GcqsgP crsgr CHIB_MAIZE : 47- 56: eycgd GcqsGpcrsG rgggg CHIB_MAIZE : 56- 63: gpcrs Gr--GgggsG gggan CHIB_MAIZE : 56- 64: gpcrs Grg-GggsgG gganv CHIB_MAIZE : 56- 65: gpcrs GrggGgsggG ganva CHIB_MAIZE : 58- 65: crsgr Gg--GgsggG ganva CHIB_MAIZE : 58- 66: crsgr Ggg-GsgggG anvas CHIB_MAIZE : 59- 66: rsgrg Gg--GsgggG anvas CHIB_MAIZE : 60- 69: sgrgg GgsgGgganV asvvt CHIB_MAIZE : 61- 69: grggg Gsg-GgganV asvvt CHIB_MAIZE : 106- 114: lsavk Gyp-GfahgG sqvqg CHIB_MAIZE : 183- 192: nygpa GraiGfdglG dpgrv CHIB_MAIZE : 187- 195: agrai Gfd-GlgdpG rvard CHIB_MAIZE : 190- 197: aigfd Gl--GdpgrV ardav CHIB_PEA : 4- 13: eqc GrqaGgatcP nnlcc CHIB_POPTR : 25- 34: saeqc GqqaGdalcP gglcc CHIB_POPTR : 62- 69: qsqcd Gg--GggggG ggggg CHIB_POPTR : 62- 70: qsqcd Ggg-GggggG ggggg CHIB_POPTR : 62- 71: qsqcd GgggGggggG ggggg CHIB_POPTR : 63- 70: sqcdg Gg--GggggG ggggg CHIB_POPTR : 63- 71: sqcdg Ggg-GggggG ggggg CHIB_POPTR : 63- 72: sqcdg GgggGggggG ggggg CHIB_POPTR : 64- 71: qcdgg Gg--GggggG ggggg CHIB_POPTR : 64- 72: qcdgg Ggg-GggggG ggggg CHIB_POPTR : 64- 73: qcdgg GgggGggggG ggggg CHIB_POPTR : 65- 72: cdggg Gg--GggggG ggggg CHIB_POPTR : 65- 73: cdggg Ggg-GggggG ggggg CHIB_POPTR : 65- 74: cdggg GgggGggggG ggggg CHIB_POPTR : 66- 73: dgggg Gg--GggggG ggggg CHIB_POPTR : 66- 74: dgggg Ggg-GggggG ggggg CHIB_POPTR : 66- 75: dgggg GgggGggggG ggggg CHIB_POPTR : 67- 74: ggggg Gg--GggggG ggggg CHIB_POPTR : 67- 75: ggggg Ggg-GggggG ggggg CHIB_POPTR : 67- 76: ggggg GgggGggggG ggggg CHIB_POPTR : 68- 75: ggggg Gg--GggggG ggggg CHIB_POPTR : 68- 76: ggggg Ggg-GggggG ggggg CHIB_POPTR : 68- 77: ggggg GgggGggggG ggggd CHIB_POPTR : 69- 76: ggggg Gg--GggggG ggggg CHIB_POPTR : 69- 77: ggggg Ggg-GggggG ggggd CHIB_POPTR : 69- 78: ggggg GgggGggggG gggdg CHIB_POPTR : 70- 77: ggggg Gg--GggggG ggggd CHIB_POPTR : 70- 78: ggggg Ggg-GggggG gggdg CHIB_POPTR : 70- 79: ggggg GgggGggggG ggdgy CHIB_POPTR : 71- 78: ggggg Gg--GggggG gggdg CHIB_POPTR : 71- 79: ggggg Ggg-GggggG ggdgy CHIB_POPTR : 71- 80: ggggg GgggGggggG gdgyl CHIB_POPTR : 72- 79: ggggg Gg--GggggG ggdgy CHIB_POPTR : 72- 80: ggggg Ggg-GggggG gdgyl CHIB_POPTR : 72- 81: ggggg GgggGggggG dgyls CHIB_POPTR : 73- 80: ggggg Gg--GggggG gdgyl CHIB_POPTR : 73- 81: ggggg Ggg-GggggG dgyls CHIB_POPTR : 74- 81: ggggg Gg--GggggG dgyls CHIB_POPTR : 74- 83: ggggg GgggGgggdG ylsdi CHIB_POPTR : 75- 83: ggggg Ggg-GgggdG ylsdi CHIB_POPTR : 76- 83: ggggg Gg--GgggdG ylsdi CHIB_POPTR : 79- 88: ggggg GggdGylsdI ipesm CHIB_POPTR : 80- 88: ggggg Ggd-GylsdI ipesm CHIB_POPTR : 81- 88: ggggg Gd--GylsdI ipesm CHIB_POPTR : 241- 248: agrvp Gy--GvitnI inggi CHIC_LYCES : 67- 75: cpggp Gps-GdlggV isnsm CHIC_LYCES : 110- 119: fvtaa GsfpGfgttG ditar CHIC_LYCES : 114- 121: agsfp Gf--GttgdI tarkr CHIC_LYCES : 162- 170: flreq Gsp-GdyctP ssqwp CHIC_LYCES : 197- 205: hnyny Gpc-GraigV dllnn CHIC_LYCES : 261- 268: anrvp Gf--GvitnI inggl CHIC_LYCES : 276- 283: gglec Gh--GsdsrV qdrig CHIC_LYCES : 314- 321: nqrsf Gn--GllvdI m CHIC_POPTR : 26- 35: saeqc GrqaGdalcP gglcc CHIC_POPTR : 63- 71: qsqcd Ggd-GcdggG ggggd CHIC_POPTR : 64- 71: sqcdg Gd--GcdggG ggggd CHIC_POPTR : 66- 74: cdggd Gcd-GggggG gdgdd CHIC_POPTR : 66- 75: cdggd GcdgGggggG dgddg CHIC_POPTR : 69- 77: gdgcd Ggg-GgggdG ddgyl CHIC_POPTR : 70- 77: dgcdg Gg--GgggdG ddgyl CHIC_POPTR : 71- 80: gcdgg GgggGdgddG ylsdi CHIC_POPTR : 72- 80: cdggg Ggg-GdgddG ylsdi CHIC_POPTR : 73- 80: dgggg Gg--GdgddG ylsdi CHIC_POPTR : 77- 85: ggggd Gdd-GylsdI ipkst CHID_LYCES : 129- 137: ynyny Gaa-GsaigV nllnn CHID_LYCES : 193- 200: pgrvp Gf--GvitnI inggm CHIP_TOBAC : 198- 205: anrap Gc--GvitnI inggi CHIP_TOBAC : 213- 220: ggiec Gv--GpnaaV edrig CHIQ_TOBAC : 198- 205: anrvp Gy--GvitnI inggi CHIQ_TOBAC : 213- 220: ggiec Gi--GrndaV edrig CHIT_ARATH : 24- 33: saeqc GrqaGgalcP nglcc CHIT_ARATH : 68- 76: ggtpp Gpt-GdlsgI isssq CHIT_ARATH : 197- 205: wnyny Glc-GraigV dllnn CHIT_ARATH : 261- 268: agrlp Gy--GvitnI inggl CHIT_ARATH : 272- 281: niing GlecGrgqdG rvadr CHIT_ARATH : 276- 283: gglec Gr--GqdgrV adrig CHIT_DIOJA : 26- 33: sydyc Gp--GcqagP cwdpc CHIT_DIOJA : 28- 37: dycgp GcqaGpcwdP cegdg CHIT_DIOJA : 204- 211: ldpnq Gf--GatirI inggq CHIT_PETHY : 113- 122: cflre GnqmGngyyG rgpiq CHIT_PETHY : 117- 124: egnqm Gn--GyygrG piqlt CHIT_PETHY : 199- 206: anrvp Gy--GvitnI inggi CHIT_PETHY : 214- 221: ggiec Gk--GqnarV edrig CHIT_PHAVU : 27- 36: vggsy GeqcGrqagG alcpg CHIT_PHAVU : 31- 40: ygeqc GrqaGgalcP ggncc CHIT_PHAVU : 199- 207: wnyny Gqc-GraigV dllnk CHIT_PHAVU : 263- 270: arrlp Gy--GtvtnI inggl CHIT_PHAVU : 278- 285: gglec Gr--GqdsrV qdrig CHIT_SOLTU : 68- 75: qsqcp Gg--GpgpgP ggdlg CHIT_SOLTU : 68- 77: qsqcp GggpGpgpgG dlgsa CHIT_SOLTU : 69- 77: sqcpg Ggp-GpgpgG dlgsa CHIT_SOLTU : 70- 77: qcpgg Gp--GpgpgG dlgsa CHIT_SOLTU : 120- 127: arsfp Gf--GtsgdI narkr CHIT_SOLTU : 168- 176: flrer Gnp-GdycpP ssqwp CHIT_SOLTU : 203- 211: hnyny Gpc-GraigV dllnn CHIT_SOLTU : 267- 274: anrlp Gf--GvitnI inggl CHIT_SOLTU : 282- 289: gglec Gr--GtdnrV qdrig CHIX_PEA : 27- 36: kaeqc GsqaGgavcP nglcc CHIX_PEA : 267- 274: agrvp Gy--GvitnI inggi CHIX_PEA : 282- 289: ggiec Gh--GqdnrV ddrvg IAMY_COILA : 70- 79: nygpa GraiGmdglG npdrv IAMY_COILA : 77- 84: aigmd Gl--GnpdrV aqdal B 2: 7.8401 338( 40) G-x(0,1)-G Occurences: 338(40) AGI_URTDI : 30- 31: rcgsq G-G ggtcp AGI_URTDI : 30- 32: rcgsq GgG gtcpa AGI_URTDI : 31- 32: cgsqg G-G gtcpa AGI_URTDI : 31- 33: cgsqg GgG tcpal AGI_URTDI : 32- 33: gsqgg G-G tcpal AGI_URTDI : 94- 95: vhgwc G-G gndyc AGI_URTDI : 94- 96: vhgwc GgG ndycs AGI_URTDI : 95- 96: hgwcg G-G ndycs CHI1_CASSA : 3- 4: ac G-G gggdv CHI1_CASSA : 3- 5: ac GgG ggdvg CHI1_CASSA : 4- 5: acg G-G ggdvg CHI1_CASSA : 4- 6: acg GgG gdvgs CHI1_CASSA : 5- 6: acgg G-G gdvgs CHI1_CASSA : 5- 7: acgg GgG dvgsl CHI1_CASSA : 6- 7: acggg G-G dvgsl CHI1_HORVU : 5- 6: hett G-G watap CHI1_HORVU : 48- 50: gksyy GrG piqls CHI1_HORVU : 125- 127: agrvp GfG vitni CHI1_HORVU : 135- 136: tnivn G-G iecgh CHI1_HORVU : 140- 142: ggiec GhG qdsrv CHI1_HORVU : 162- 164: ycdil GvG ygnnl CHI1_HORVU : 164- 166: dilgv GyG nnldc CHI1_ORYSA : 26- 27: cgsqa G-G alcpn CHI1_ORYSA : 50- 52: tsdyc GaG cqsqc CHI1_ORYSA : 59- 60: qsqcs G-G cgggp CHI1_ORYSA : 60- 62: sqcsg GcG ggptp CHI1_ORYSA : 62- 63: csggc G-G gptpp CHI1_ORYSA : 62- 64: csggc GgG ptpps CHI1_ORYSA : 63- 64: sggcg G-G ptpps CHI1_ORYSA : 71- 72: tppss G-G gsgva CHI1_ORYSA : 71- 73: tppss GgG sgvas CHI1_ORYSA : 72- 73: ppssg G-G sgvas CHI1_ORYSA : 73- 75: pssgg GsG vasii CHI1_ORYSA : 144- 145: shett G-G wptap CHI1_ORYSA : 188- 190: akkyy GrG piqit CHI1_ORYSA : 201- 203: ynyny GrG agigs CHI1_ORYSA : 203- 205: ynygr GaG igsdl CHI1_ORYSA : 205- 207: ygrga GiG sdlln CHI1_ORYSA : 263- 265: agrvp GyG eitni CHI1_ORYSA : 273- 274: tniin G-G vecgh CHI1_ORYSA : 278- 280: ggvec GhG addkv CHI1_PEA : 8- 9: cgnqa G-G xvppn CHI1_TOBAC : 31- 32: cgsqa G-G arcps CHI1_TOBAC : 55- 57: tndyc GpG ncqsq CHI1_TOBAC : 65- 66: qsqcp G-G ptptp CHI1_TOBAC : 76- 77: pptpp G-G gdlgs CHI1_TOBAC : 76- 78: pptpp GgG dlgsi CHI1_TOBAC : 77- 78: ptppg G-G dlgsi CHI1_TOBAC : 103- 105: dnacq GkG fysyn CHI1_TOBAC : 121- 123: arsfp GfG tsgdt CHI1_TOBAC : 148- 149: shett G-G watap CHI1_TOBAC : 191- 193: grkyf GrG piqis CHI1_TOBAC : 268- 270: anrlp GfG vitni CHI1_TOBAC : 278- 279: tniin G-G lecgr CHI1_TOBAC : 283- 285: gglec GrG tdsrv CHI1_TOBAC : 321- 323: nqrsf GnG llvdt CHI2_ARAHY : 32- 34: anrtl GfG lvtni CHI2_ARAHY : 42- 43: tniin G-G ldc CHI2_BRANA : 28- 29: cgrqa G-G alcpn CHI2_BRANA : 61- 62: cqsqc G-G tppgp CHI2_BRANA : 112- 114: aksfp GfG ttgdt CHI2_BRANA : 139- 140: shett G-G watap CHI2_BRANA : 182- 184: gksyy GrG pmqls CHI2_BRANA : 259- 261: agrvp GyG vitni CHI2_BRANA : 269- 270: tniin G-G lecgr CHI2_BRANA : 274- 276: gglec GrG qdarv CHI2_BRANA : 300- 301: lgvnp G-G nldcy CHI2_HORVU : 66- 68: aaafp GfG ttgsa CHI2_HORVU : 93- 94: shett G-G watap CHI2_HORVU : 136- 138: gkryy GrG piqls CHI2_HORVU : 213- 215: agrvp GfG vitni CHI2_HORVU : 223- 224: tniin G-G iecgh CHI2_HORVU : 228- 230: ggiec GhG qdsrv CHI2_HORVU : 250- 252: ycdil GvG ygnnl CHI2_HORVU : 252- 254: dilgv GyG nnldc CHI2_ORYSA : 29- 30: cgsqa G-G avcpn CHI2_ORYSA : 53- 55: tsdyc GaG cqsqc CHI2_ORYSA : 72- 73: rpdas G-G ggsgv CHI2_ORYSA : 72- 74: rpdas GgG gsgva CHI2_ORYSA : 73- 74: pdasg G-G gsgva CHI2_ORYSA : 73- 75: pdasg GgG sgvas CHI2_ORYSA : 74- 75: dasgg G-G sgvas CHI2_ORYSA : 75- 77: asggg GsG vasiv CHI2_ORYSA : 146- 147: shett G-G watap CHI2_ORYSA : 167- 168: fkeen G-G agpdy CHI2_ORYSA : 168- 170: keeng GaG pdycq CHI2_ORYSA : 190- 192: gkkyy GrG piqls CHI2_ORYSA : 267- 269: agrvp GyG vitni CHI2_ORYSA : 277- 278: tniin G-G lecgh CHI2_ORYSA : 282- 284: gglec GhG eddri CHI2_PEA : 8- 9: cgtqa G-G alcpg CHI2_PEA : 14- 15: galcp G-G l CHI2_TOBAC : 31- 32: cgsqa G-G arcas CHI2_TOBAC : 55- 57: tndyc GpG ncqsq CHI2_TOBAC : 65- 66: qsqcp G-G ptppg CHI2_TOBAC : 71- 72: gptpp G-G gdlgs CHI2_TOBAC : 71- 73: gptpp GgG dlgsi CHI2_TOBAC : 72- 73: ptppg G-G dlgsi CHI2_TOBAC : 98- 100: dnacq GkG fysyn CHI2_TOBAC : 116- 118: arsfp GfG tsgdt CHI2_TOBAC : 143- 144: shett G-G watap CHI2_TOBAC : 186- 188: grkyf GrG piqis CHI2_TOBAC : 263- 265: anrlp GfG vitni CHI2_TOBAC : 273- 274: tniin G-G lecgr CHI2_TOBAC : 278- 280: gglec GrG tdsrv CHI2_TOBAC : 316- 318: nqrsf GnG llvdt CHI3_ARAHY : 32- 34: agrvs GfG vitni CHI3_ARAHY : 42- 43: tniin G-G ldc CHI3_TOBAC : 31- 32: cgkqa G-G arcps CHI3_TOBAC : 55- 57: tqdyc GpG kcqsq CHI3_TOBAC : 66- 68: sqcps GpG ptprp CHI3_TOBAC : 126- 128: arsfr GfG ttgdt CHI3_TOBAC : 153- 154: shett G-G wdtap CHI3_TOBAC : 196- 198: gqkyy GrG piqis CHI3_TOBAC : 273- 275: anrlp GyG vitni CHI3_TOBAC : 283- 284: tniin G-G lecgh CHI3_TOBAC : 288- 290: gglec GhG sdarv CHI4_ARAHY : 32- 34: agrap GyG vitni CHI4_ARAHY : 42- 43: tniin G-G ldc CHI4_BRANA : 49- 51: tdayc GtG crsgp CHI4_BRANA : 61- 62: pcrsp G-G tpspp CHI4_BRANA : 68- 69: tpspp G-G gsvgs CHI4_BRANA : 68- 70: tpspp GgG svgsi CHI4_BRANA : 69- 70: psppg G-G svgsi CHI4_BRANA : 89- 90: iinqa G-G gcagk CHI4_BRANA : 89- 91: iinqa GgG cagkn CHI4_BRANA : 90- 91: inqag G-G cagkn CHI4_BRANA : 162- 164: ypcap GkG yfgrg CHI4_BRANA : 167- 169: gkgyf GrG piqls CHI4_BRANA : 223- 225: pvlnq GfG atira CHI4_BRANA : 238- 239: gmecn G-G nsgav CHI4_PHAVU : 41- 43: qygyc GtG edycg CHI4_PHAVU : 48- 50: gedyc GtG cqqgp CHI4_PHAVU : 168- 170: skgyh GrG piqls CHI4_PHAVU : 191- 193: annfd GlG apetv CHI4_PHAVU : 224- 226: pvinq GfG atira CHI5_PHAVU : 22- 23: wmllv G-G sygeq CHI5_PHAVU : 34- 35: cgrqa G-G alcpg CHI5_PHAVU : 40- 41: galcp G-G nccsq CHI5_PHAVU : 66- 67: cqsqc G-G pspap CHI5_PHAVU : 143- 144: shett G-G watap CHI5_PHAVU : 185- 187: gqqyy GrG piqis CHI5_PHAVU : 262- 264: arrlp GyG tvtni CHI5_PHAVU : 272- 273: tniin G-G lecgr CHI5_PHAVU : 277- 279: gglec GrG qdsrv CHI5_PHAVU : 299- 301: ycdll GvG ygnnl CHI5_PHAVU : 301- 303: dllgv GyG nnldc CHI6_POPTR : 31- 32: shett G-G wpdap CHI6_POPTR : 73- 75: gkqyc GrG piqls CHI6_POPTR : 150- 152: agrvp GyG vitni CHI6_POPTR : 160- 161: tniin G-G iecgq CHI6_POPTR : 165- 167: ggiec GqG gpnaa CHI6_POPTR : 167- 168: iecgq G-G pnaan CHI6_POPTR : 204- 206: qqrpf GyG lsglk CHI8_POPTR : 44- 45: lccss G-G ycglt CHI8_POPTR : 86- 88: ndscp GkG fytyd CHI8_POPTR : 104- 106: tefyp GfG mtgdd CHI8_POPTR : 174- 176: vadyy GrG plqlr CHI8_POPTR : 252- 254: agrkp GfG mltni CHI8_POPTR : 263- 264: niitn G-G ectkd CHIA_ARAHY : 32- 34: agrvs GfG vitni CHIA_ARAHY : 42- 43: tniin G-G ldc CHIA_LYCES : 68- 70: ansfp GfG tagdd CHIA_LYCES : 95- 96: shetn G-G sagtf CHIA_LYCES : 103- 104: agtft G-G ycfvk CHIA_LYCES : 119- 121: sdryy GrG piqlt CHIA_LYCES : 135- 137: nyera GqG igvgq CHIA_LYCES : 137- 139: eragq GiG vgqel CHIA_LYCES : 139- 141: agqgi GvG qelvn CHIA_LYCES : 198- 200: anrvp GyG vitni CHIA_LYCES : 213- 215: gqfec GmG pntaa CHIA_MAIZE : 50- 52: tdayc GdG cqsgp CHIA_MAIZE : 61- 62: gpcrs G-G ggggg CHIA_MAIZE : 61- 63: gpcrs GgG ggggg CHIA_MAIZE : 62- 63: pcrsg G-G ggggg CHIA_MAIZE : 62- 64: pcrsg GgG ggggg CHIA_MAIZE : 63- 64: crsgg G-G ggggg CHIA_MAIZE : 63- 65: crsgg GgG ggggg CHIA_MAIZE : 64- 65: rsggg G-G ggggg CHIA_MAIZE : 64- 66: rsggg GgG ggggg CHIA_MAIZE : 65- 66: sgggg G-G ggggg CHIA_MAIZE : 65- 67: sgggg GgG ggggg CHIA_MAIZE : 66- 67: ggggg G-G ggggg CHIA_MAIZE : 66- 68: ggggg GgG ggggg CHIA_MAIZE : 67- 68: ggggg G-G ggggg CHIA_MAIZE : 67- 69: ggggg GgG ggggg CHIA_MAIZE : 68- 69: ggggg G-G ggggg CHIA_MAIZE : 68- 70: ggggg GgG ggggs CHIA_MAIZE : 69- 70: ggggg G-G ggggs CHIA_MAIZE : 69- 71: ggggg GgG gggsg CHIA_MAIZE : 70- 71: ggggg G-G gggsg CHIA_MAIZE : 70- 72: ggggg GgG ggsgg CHIA_MAIZE : 71- 72: ggggg G-G ggsgg CHIA_MAIZE : 71- 73: ggggg GgG gsgga CHIA_MAIZE : 72- 73: ggggg G-G gsgga CHIA_MAIZE : 72- 74: ggggg GgG sggan CHIA_MAIZE : 73- 74: ggggg G-G sggan CHIA_MAIZE : 74- 76: ggggg GsG ganva CHIA_MAIZE : 76- 77: ggggs G-G anvan CHIA_MAIZE : 97- 99: iknqa GsG cegkn CHIA_MAIZE : 124- 125: pgfah G-G teveg CHIA_MAIZE : 178- 180: gqkyy GrG plqis CHIA_MAIZE : 234- 236: gvmpq GfG atira CHIB_ARAHY : 32- 34: agrvs GfG vitni CHIB_ARAHY : 42- 43: tniin G-G ldc CHIB_LYCES : 60- 62: ansfp GfG ttgdd CHIB_LYCES : 87- 88: shett G-G slsad CHIB_LYCES : 98- 99: dgpfa G-G ycfvr CHIB_LYCES : 110- 112: egnqm GsG fygrg CHIB_LYCES : 115- 117: gsgfy GrG piqlt CHIB_LYCES : 192- 194: anrqp GyG vitni CHIB_LYCES : 202- 203: tniin G-G iecgk CHIB_LYCES : 207- 209: ggiec GkG qnpqv CHIB_MAIZE : 45- 47: tdeyc GdG cqsgp CHIB_MAIZE : 56- 58: gpcrs GrG gggsg CHIB_MAIZE : 58- 59: crsgr G-G ggsgg CHIB_MAIZE : 58- 60: crsgr GgG gsggg CHIB_MAIZE : 59- 60: rsgrg G-G gsggg CHIB_MAIZE : 59- 61: rsgrg GgG sgggg CHIB_MAIZE : 60- 61: sgrgg G-G sgggg CHIB_MAIZE : 61- 63: grggg GsG gggan CHIB_MAIZE : 63- 64: ggggs G-G gganv CHIB_MAIZE : 63- 65: ggggs GgG ganva CHIB_MAIZE : 64- 65: gggsg G-G ganva CHIB_MAIZE : 64- 66: gggsg GgG anvas CHIB_MAIZE : 65- 66: ggsgg G-G anvas CHIB_MAIZE : 86- 88: iknqa GsG cegkn CHIB_MAIZE : 113- 114: pgfah G-G sqvqg CHIB_MAIZE : 167- 169: gqkyy GrG plqis CHIB_MAIZE : 190- 192: aigfd GlG dpgrv CHIB_MAIZE : 223- 225: gvvpq GfG attra CHIB_MAIZE : 238- 239: ralec G-G nnpaq CHIB_PEA : 8- 9: cgrqa G-G atcpn CHIB_POPTR : 35- 36: dalcp G-G lccss CHIB_POPTR : 53- 55: tadyc GdG cqsqc CHIB_POPTR : 62- 63: qsqcd G-G ggggg CHIB_POPTR : 62- 64: qsqcd GgG ggggg CHIB_POPTR : 63- 64: sqcdg G-G ggggg CHIB_POPTR : 63- 65: sqcdg GgG ggggg CHIB_POPTR : 64- 65: qcdgg G-G ggggg CHIB_POPTR : 64- 66: qcdgg GgG ggggg CHIB_POPTR : 65- 66: cdggg G-G ggggg CHIB_POPTR : 65- 67: cdggg GgG ggggg CHIB_POPTR : 66- 67: dgggg G-G ggggg CHIB_POPTR : 66- 68: dgggg GgG ggggg CHIB_POPTR : 67- 68: ggggg G-G ggggg CHIB_POPTR : 67- 69: ggggg GgG ggggg CHIB_POPTR : 68- 69: ggggg G-G ggggg CHIB_POPTR : 68- 70: ggggg GgG ggggg CHIB_POPTR : 69- 70: ggggg G-G ggggg CHIB_POPTR : 69- 71: ggggg GgG ggggg CHIB_POPTR : 70- 71: ggggg G-G ggggg CHIB_POPTR : 70- 72: ggggg GgG ggggg CHIB_POPTR : 71- 72: ggggg G-G ggggg CHIB_POPTR : 71- 73: ggggg GgG ggggg CHIB_POPTR : 72- 73: ggggg G-G ggggg CHIB_POPTR : 72- 74: ggggg GgG ggggg CHIB_POPTR : 73- 74: ggggg G-G ggggg CHIB_POPTR : 73- 75: ggggg GgG ggggg CHIB_POPTR : 74- 75: ggggg G-G ggggg CHIB_POPTR : 74- 76: ggggg GgG ggggg CHIB_POPTR : 75- 76: ggggg G-G ggggg CHIB_POPTR : 75- 77: ggggg GgG ggggd CHIB_POPTR : 76- 77: ggggg G-G ggggd CHIB_POPTR : 76- 78: ggggg GgG gggdg CHIB_POPTR : 77- 78: ggggg G-G gggdg CHIB_POPTR : 77- 79: ggggg GgG ggdgy CHIB_POPTR : 78- 79: ggggg G-G ggdgy CHIB_POPTR : 78- 80: ggggg GgG gdgyl CHIB_POPTR : 79- 80: ggggg G-G gdgyl CHIB_POPTR : 79- 81: ggggg GgG dgyls CHIB_POPTR : 80- 81: ggggg G-G dgyls CHIB_POPTR : 81- 83: ggggg GdG ylsdi CHIB_POPTR : 241- 243: agrvp GyG vitni CHIB_POPTR : 251- 252: tniin G-G iecgq CHIB_POPTR : 256- 258: ggiec GqG gpnna CHIB_POPTR : 258- 259: iecgq G-G pnnan CHIB_POPTR : 295- 297: qqrpf GyG llglk CHIC_LYCES : 30- 31: cgsqa G-G alcas CHIC_LYCES : 54- 56: tneyc GpG ncqsq CHIC_LYCES : 64- 65: qsqcp G-G pgpsg CHIC_LYCES : 65- 67: sqcpg GpG psgdl CHIC_LYCES : 73- 74: psgdl G-G visns CHIC_LYCES : 114- 116: agsfp GfG ttgdi CHIC_LYCES : 141- 142: shett G-G wptap CHIC_LYCES : 184- 186: grkyf GrG piqis CHIC_LYCES : 261- 263: anrvp GfG vitni CHIC_LYCES : 271- 272: tniin G-G lecgh CHIC_LYCES : 276- 278: gglec GhG sdsrv CHIC_LYCES : 314- 316: nqrsf GnG llvdi CHIC_POPTR : 36- 37: dalcp G-G lccsf CHIC_POPTR : 54- 56: tvdyc GdG cqsqc CHIC_POPTR : 63- 64: qsqcd G-G dgcdg CHIC_POPTR : 64- 66: sqcdg GdG cdggg CHIC_POPTR : 69- 70: gdgcd G-G ggggg CHIC_POPTR : 69- 71: gdgcd GgG ggggd CHIC_POPTR : 70- 71: dgcdg G-G ggggd CHIC_POPTR : 70- 72: dgcdg GgG gggdg CHIC_POPTR : 71- 72: gcdgg G-G gggdg CHIC_POPTR : 71- 73: gcdgg GgG ggdgd CHIC_POPTR : 72- 73: cdggg G-G ggdgd CHIC_POPTR : 72- 74: cdggg GgG gdgdd CHIC_POPTR : 73- 74: dgggg G-G gdgdd CHIC_POPTR : 73- 75: dgggg GgG dgddg CHIC_POPTR : 74- 75: ggggg G-G dgddg CHIC_POPTR : 75- 77: ggggg GdG ddgyl CHID_LYCES : 73- 74: shett G-G watap CHID_LYCES : 116- 118: gkkyf GrG piqis CHID_LYCES : 193- 195: pgrvp GfG vitni CHID_LYCES : 203- 204: tniin G-G mecns CHIP_TOBAC : 26- 28: gslaq GiG sivtn CHIP_TOBAC : 68- 70: ansfp GfG tsgdd CHIP_TOBAC : 95- 96: shett G-G slsae CHIP_TOBAC : 105- 106: aepft G-G ycfvr CHIP_TOBAC : 121- 123: sdryy GrG piqlt CHIP_TOBAC : 198- 200: anrap GcG vitni CHIP_TOBAC : 208- 209: tniin G-G iecgv CHIP_TOBAC : 213- 215: ggiec GvG pnaav CHIQ_TOBAC : 26- 28: gslaq GiG sivts CHIQ_TOBAC : 68- 70: ansfp GfG ttgdd CHIQ_TOBAC : 95- 96: shett G-G slsae CHIQ_TOBAC : 105- 106: aepft G-G ycfvr CHIQ_TOBAC : 121- 123: sdryy GrG piqlt CHIQ_TOBAC : 198- 200: anrvp GyG vitni CHIQ_TOBAC : 208- 209: tniin G-G iecgi CHIQ_TOBAC : 213- 215: ggiec GiG rndav CHIQ_TOBAC : 251- 253: nqrnf GqG CHIT_ARATH : 28- 29: cgrqa G-G alcpn CHIT_ARATH : 63- 64: sqctp G-G tppgp CHIT_ARATH : 114- 116: aksfp GfG ttgdt CHIT_ARATH : 141- 142: shett G-G watap CHIT_ARATH : 184- 186: gkryy GrG pmqls CHIT_ARATH : 261- 263: agrlp GyG vitni CHIT_ARATH : 271- 272: tniin G-G lecgr CHIT_ARATH : 276- 278: gglec GrG qdgrv CHIT_ARATH : 302- 303: fgvnp G-G nldcy CHIT_DIOJA : 26- 28: sydyc GpG cqagp CHIT_DIOJA : 40- 42: wdpce GdG tltvs CHIT_DIOJA : 86- 88: vsayp GfG tkctd CHIT_DIOJA : 144- 146: nkeyf GrG pmqls CHIT_DIOJA : 204- 206: ldpnq GfG atiri CHIT_DIOJA : 214- 215: iriin G-G qecdg CHIT_PETHY : 67- 69: ansfp GfG ttgdd CHIT_PETHY : 94- 95: shett G-G tlspd CHIT_PETHY : 105- 106: dgpya G-G ycflr CHIT_PETHY : 117- 119: egnqm GnG yygrg CHIT_PETHY : 122- 124: gngyy GrG piqlt CHIT_PETHY : 199- 201: anrvp GyG vitni CHIT_PETHY : 209- 210: tniin G-G iecgk CHIT_PETHY : 214- 216: ggiec GkG qnarv CHIT_PHAVU : 23- 24: mlllv G-G sygeq CHIT_PHAVU : 35- 36: cgrqa G-G alcpg CHIT_PHAVU : 41- 42: galcp G-G nccsq CHIT_PHAVU : 59- 61: ttdyc GpG cqsqc CHIT_PHAVU : 67- 68: cqsqc G-G pspap CHIT_PHAVU : 144- 145: shett G-G watap CHIT_PHAVU : 186- 188: gqqyy GrG piqis CHIT_PHAVU : 263- 265: arrlp GyG tvtni CHIT_PHAVU : 273- 274: tniin G-G lecgr CHIT_PHAVU : 278- 280: gglec GrG qdsrv CHIT_PHAVU : 300- 302: ycdll GvG ygnnl CHIT_PHAVU : 302- 304: dllgv GyG nnldc CHIT_SOLTU : 33- 34: ncgsq G-G gkaca CHIT_SOLTU : 33- 35: ncgsq GgG kacas CHIT_SOLTU : 34- 35: cgsqg G-G kacas CHIT_SOLTU : 58- 60: tndyc GsG ncqsq CHIT_SOLTU : 68- 69: qsqcp G-G gpgpg CHIT_SOLTU : 68- 70: qsqcp GgG pgpgp CHIT_SOLTU : 69- 70: sqcpg G-G pgpgp CHIT_SOLTU : 70- 72: qcpgg GpG pgpgg CHIT_SOLTU : 72- 74: pgggp GpG pggdl CHIT_SOLTU : 74- 76: ggpgp GpG gdlgs CHIT_SOLTU : 76- 77: pgpgp G-G dlgsa CHIT_SOLTU : 120- 122: arsfp GfG tsgdi CHIT_SOLTU : 147- 148: shett G-G wasap CHIT_SOLTU : 190- 192: grkyf GrG piqis CHIT_SOLTU : 267- 269: anrlp GfG vitni CHIT_SOLTU : 277- 278: tniin G-G lecgr CHIT_SOLTU : 282- 284: gglec GrG tdnrv CHIX_PEA : 31- 32: cgsqa G-G avcpn CHIX_PEA : 55- 57: tdpyc GdG cqsqc CHIX_PEA : 76- 77: ptpst G-G gdvgr CHIX_PEA : 76- 78: ptpst GgG dvgrl CHIX_PEA : 77- 78: tpstg G-G dvgrl CHIX_PEA : 103- 105: dgrca GhG fytyd CHIX_PEA : 121- 123: arsfn GfG ttgdd CHIX_PEA : 148- 149: shett G-G wptap CHIX_PEA : 190- 192: gkkyy GrG piqlt CHIX_PEA : 267- 269: agrvp GyG vitni CHIX_PEA : 277- 278: tniin G-G iecgh CHIX_PEA : 282- 284: ggiec GhG qdnrv CHIX_PEA : 308- 309: fgvdp G-G nldcn IAMY_COILA : 54- 56: gkkyy GrG piqis IAMY_COILA : 77- 79: aigmd GlG npdrv Number of patterns evaluated by Pratt:2 Total running time: 1 seconds