------------------------------------------------------------
                Pratt version 2.1, Sept. 1996
                 Written by Inge Jonassen, 
                   University of Bergen
                           Norway
                   email: inge@ii.uib.no
                 For more information, see 
            http://www.ii.uib.no/~inge/Pratt.html
------------------------------------------------------------
                        Please quote:
             I.Jonassen, J.F.Collins, D.G.Higgins.
             Protein Science 1995;4(8):1587-1595.
------------------------------------------------------------



                Pratt version 2.1 

        Analysing 79 sequences from file CHAPERONINS_CPN60

PATTERN CONSERVATION:
   CM: min Nr of Seqs to Match                 79
   C%: min Percentage Seqs to Match         100.0

PATTERN RESTRICTIONS :
   PP: pos in seq [off,complete,start]        off
   PL: max Pattern Length                      50
   PN: max Nr of Pattern Symbols               20
   PX: max Nr of consecutive x's                5
   FN: max Nr of flexible spacers               2
   FL: max Flexibility                          2
   FP: max Flex.Product                        10
   BI: Input Pattern Symbol File              off
   BN: Nr of Pattern Symbols Initial Search    20

PATTERN SCORING:
   S: Scoring [info,mdl,tree,dist,ppv]       info

SEARCH PARAMETERS:
   G: Pattern Graph from [seq,al,query]       seq
   E: Search Greediness                         3
   R: Pattern Refinement                       on
   RG: Generalise ambiguous symbols           off

OUTPUT:
   OF: Output Filename       CHAPERONINS_CPN60.pratt2
   OP: PROSITE Pattern Format                  on
   ON: max number patterns                     20
   OA: max number Alignments                   20
   M: Print Patterns in sequences             off




Sequence lengths:
    CH60_ACTAC    545
    CH60_ACYPS    548
    CH60_AGRTU    544
    CH60_AMOPS    551
    CH60_ARATH    577
    CH60_BACST    539
    CH60_BACSU    543
    CH60_BARBA    543
    CH60_BORBU    545
    CH60_BRANA    587
    CH60_BRUAB    546
    CH60_CHLPN    544
    CH60_CHLPS    544
    CH60_CHLTR    543
    CH60_CHRVI    546
    CH60_CLOAB    543
    CH60_CLOPE    539
    CH60_COXBU    552
    CH60_ECOLI    547
    CH60_EHRCH    550
    CH60_GALSU    534
    CH60_HAEDU    547
    CH60_HAEIN    548
    CH60_HELPY    546
    CH60_HELVI     24
    CH60_LACLA    542
    CH60_LEGMI    546
    CH60_LEGPN    547
    CH60_LEPIN    546
    CH60_MAIZE    577
    CH60_MYCPA    541
    CH60_MYCTU    540
    CH60_NEIGO    541
    CH60_NEIME    544
    CH60_PLAFG    700
    CH60_PORGI    545
    CH60_PSEAE    547
    CH60_PYRSA    585
    CH60_RHILV    546
    CH60_RHOSH     25
    CH60_RICTS    555
    CH60_STAAU    538
    CH60_SYNP6    300
    CH60_SYNP7    544
    CH60_THEP3    538
    CH60_THETH     43
    CH60_THIFE     23
    CH60_TREPA     22
    CH61_CUCMA    575
    CH61_MYCLE    537
    CH61_RHIME    545
    CH61_STRAL    539
    CH61_STRCO    539
    CH61_SYNY3    540
    CH62_BRAJA    549
    CH62_CUCMA    575
    CH62_MYCLE    541
    CH62_RHIME    541
    CH62_STRAL    539
    CH62_SYNY3    551
    CH63_BRAJA    545
    CH63_HELVI    569
    CH63_RHIME    541
    HS60_YEAST    572
     P60_BOVIN     22
     P60_CRIGR    573
     P60_DROME     11
     P60_HUMAN    573
     P60_MOUSE    573
       P60_RAT    573
    RUB1_BRANA    545
    RUB2_BRANA    583
    RUBA_ARATH    245
      RUBA_PEA     20
    RUBA_RICCO    495
    RUBA_WHEAT    543
    RUBB_ARATH    600
    RUBB_BRANA    588
      RUBB_PEA     30

Pratt run started at Thu Feb  6 19:06:11 1997

No patterns found