------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file CHANNEL_COLICIN PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CHANNEL_COLICIN.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CEA1_ECOLI 522 CEA1_SHISO 521 CEAB_ECOLI 510 CEAN_ECOLI 387 CEA_CITFR 592 CEIA_ECOLI 626 CEIB_ECOLI 626 Pratt run started at Thu Feb 6 19:06:00 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 23.0203 7( 7) G-x(2)-I-x(5)-A-x(5)-K-x(3,5)-N-x(1,3)-K 2: 19.8503 7( 7) A-x(1,2)-K-x(3)-A-x(3)-A-x(1,2)-K 3: 19.8503 8( 7) N-x(1,3)-K-x(4)-D-x(2)-A-x(3)-A 4: 19.8503 7( 7) R-x(3,4)-A-x(5)-K-x(1,2)-A-N 5: 19.3503 8( 7) A-x(4)-K-x(3,4)-D-x(0,2)-A-x(5)-K 6: 19.3503 10( 7) A-x(4,5)-K-x(1,3)-N-x(5)-A-x(3)-A 7: 19.3503 8( 7) A-x(3,4)-K-x(1,3)-N-x(5)-A-x(3)-A 8: 16.6802 8( 7) A-x(3)-A-x(5)-A-x(5)-K 9: 16.6802 7( 7) K-x(4)-D-x(2)-A-x(3)-A 10: 16.1802 9( 7) S-x(2,3)-G-x(3)-G-x(2)-G 11: 16.1802 9( 7) K-x(2)-K-x-A-x(4,5)-K 12: 16.1802 9( 7) K-x(4)-A-x(2,3)-A-x-K 13: 16.1802 7( 7) K-x(3)-A-x(3)-A-x(1,2)-K 14: 16.1802 9( 7) A-x-K-x(3,4)-A-x(5)-K 15: 16.1802 9( 7) D-A-x(5)-K-x(2,3)-N 16: 16.1802 7( 7) A-x(5)-K-x(1,2)-A-N 17: 15.6802 7( 7) L-S-x(1,2)-I-x(0,1)-A 18: 15.6802 8( 7) L-x(0,1)-L-x(0,1)-E-x-E 19: 15.6802 7( 7) T-x(2)-W-x-P-x(3,5)-E 20: 15.6802 7( 7) T-x(5)-L-x(0,1)-L-x(1,2)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 74.6949 7( 7) G-[KR]-x-I-x-[NS]-x-[DEN]-[DE]-A-[LM]-x-[AST]-x-[DEN]-K-x(3,5)-N-x(1,3)-K-x-[NS]-x(2)-D-[KR]-x-A-[IL]-x(2)-A-x(3)-[FIV]-x(3)-[DH]-x-[AGS] B 2: 71.4736 7( 7) G-[KR]-x-I-x(3)-[DEN]-[DE]-A-[LM]-x-[AST]-x-[DEN]-K-x(3,5)-N-x(1,3)-K-x-[NS]-x(2)-D-[KR]-x-A-[IL]-x(2)-A-x(3)-[FIV]-x(3)-[DH]-x-[AGS] C 3: 68.8834 7( 7) G-[KR]-x-I-x(4)-[DE]-A-[LM]-x-[AST]-x-[DEN]-K-x(3,5)-N-x(1,3)-K-x-[NS]-x(2)-D-[KR]-x-A-[IL]-x(2)-A-x(3)-[FIV]-x(3)-[DH]-x-[AGS] D 4: 65.7128 7( 7) G-[KR]-x-I-x(5)-A-[LM]-x-[AST]-x-[DEN]-K-x(3,5)-N-x(1,3)-K-x-[NS]-x(2)-D-[KR]-x-A-[IL]-x(2)-A-x(3)-[FIV]-x(3)-[DH]-x-[AGS] E 5: 59.5377 8( 7) N-x(1,3)-K-x-[NS]-x(2)-D-[KR]-x-A-[IL]-x(2)-A-x(3)-[FIV]-x(3)-[DH]-x-[AGS]-x(2)-[FIL]-x(2)-[FL]-[AGS]-[KR]-x-[FL]-x(2)-[AT]-[DG] F 6: 56.3677 7( 7) K-x-[NS]-x(2)-D-[KR]-x-A-[IL]-x(2)-A-x(3)-[FIV]-x(3)-[DH]-x-[AGS]-x(2)-[FIL]-x(2)-[FL]-[AGS]-[KR]-x-[FL]-x(2)-[AT]-[DG] G 7: 50.6633 7( 7) T-x-[DNQ]-x(3)-L-x(0,1)-L-x(1,2)-E-x(4)-[DGS]-x(2)-[ATV]-[AES]-x-[AV]-[AGV]-x(2)-[AIL]-[FL]-x-[ALV]-x(2)-[EGS]-x(3)-[GIL]-x(3)-[AILV]-x(4)-[GIV] H 8: 36.6511 7( 7) A-[NQ]-[ANP]-x(2)-K-x(3,4)-D-x(0,2)-A-x(2)-[ENQ]-x(2)-K-x-[FIV]-x-[ADN]-x(2)-[LM] I 9: 35.9418 7( 7) T-[DEG]-[DN]-W-x-P-x(3,5)-E-x(4)-[DGSV]-x-[AGSV]-[AGV]-x(3)-[ASTV]-[AIV]-x-[ALV] J 10: 34.1465 7( 7) A-x-K-x(3,4)-A-x-[ADS]-x(3)-K-x-[ADEG]-[AEGN]-x(3)-[AT]-[FL]-x-[ASTV]-x(3)-[ADSV] K 11: 32.6688 7( 7) A-x-[ANV]-x-A-x(4)-[DNS]-A-x-[DT]-x(3)-K-x-[AGI]-[ANV]-x-[AEGS] L 12: 31.7753 8( 7) L-x(0,1)-L-x(0,1)-E-x-E-[ENS]-x(3)-[AGQS]-[AGL]-x-[ADGSV]-x-[AEGNS]-x(2)-[AIL]-[AGSV] M 13: 27.4002 7( 7) R-x(3,4)-A-x-[AEST]-[ANS]-x-[ANQ]-K-x(1,2)-A-N N 14: 26.9152 7( 7) S-x(2,3)-G-x(3)-G-x(2)-G-x-[AGL]-[ILM]-[ILV]-x-[AGV] O 15: 25.3684 7( 7) A-x(1,2)-K-x(3)-A-x(3)-A-x(1,2)-K-x-[AEGN]-[AN] P 16: 23.7301 7( 7) A-x-[AEST]-[ANS]-x-[ANQ]-K-x(1,2)-A-N Q 17: 23.6090 7( 7) K-x(2)-[KR]-x-A-x(2,3)-A-x-K-x(2)-[ADGNQ]-x(4)-[AENS] R 18: 23.2158 8( 7) D-A-[ILM]-[ANSTV]-[ANQS]-x(2)-K-x(2,3)-N S 19: 21.6984 7( 7) K-x(3)-A-x(3)-A-x(1,2)-K-x-[AEGN]-[AN] T 20: 21.6756 7( 7) L-S-x(1,2)-I-x(0,1)-A-[ENRS]-[DENRS]-x-[ADENS] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 74.6949 7( 7) G-[KR]-x-I-x-[NS]-x-[DEN]-[DE]-A-[LM]-x-[AST]-x-[DEN]-K-x(3,5)-N-x(1,3)-K-x-[NS]-x(2)-D-[KR]-x-A-[IL]-x(2)-A-x(3)-[FIV]-x(3)-[DH]-x-[AGS] Occurences: 7(7) CEA1_ECOLI : 380- 425: adksk GKkIgNvNEALaAfEKykdvlNk--KfSkaDRdAIfnAlasVkydDwA khldq CEA1_SHISO : 379- 424: adksk GKkIsNvNEALaAfEKykdvlNk--KfSkaDRdAIfnAleaVkyeDwA khldq CEAB_ECOLI : 359- 404: innfq GKtIrSyDDAMsSiNKlma--NpslKiNatDKeAIvnAwkaFnaeDmG nkfaa CEAN_ECOLI : 234- 279: iknfh GRnIrSyNEAMaSlNKvla--NpkmKvNksDKdAIvnAwkqVnakDmA nkign CEA_CITFR : 438- 483: iknfq GKtIrSfDDAMaSlNKita--NpamKiNkaDRdALvnAwkhVdaqDmA nklgn CEIA_ECOLI : 484- 529: agqak GKkIrNvEEALkTyEKyradiNk--KiNakDRaAIaaAlesVklsDiS snlnr CEIB_ECOLI : 484- 529: asvsq GKqIkSvDDALnAfDKfrnnlNk--KyNiqDRmAIskAleaInqvHmA enfkl CEIB_ECOLI : 484- 529: asvsq GKqIkSvDDALnAfDKfrn--NlnkKyNiqDRmAIskAleaInqvHmA enfkl B 2: 71.4736 7( 7) G-[KR]-x-I-x(3)-[DEN]-[DE]-A-[LM]-x-[AST]-x-[DEN]-K-x(3,5)-N-x(1,3)-K-x-[NS]-x(2)-D-[KR]-x-A-[IL]-x(2)-A-x(3)-[FIV]-x(3)-[DH]-x-[AGS] Occurences: 7(7) CEA1_ECOLI : 380- 425: adksk GKkIgnvNEALaAfEKykdvlNk--KfSkaDRdAIfnAlasVkydDwA khldq CEA1_SHISO : 379- 424: adksk GKkIsnvNEALaAfEKykdvlNk--KfSkaDRdAIfnAleaVkyeDwA khldq CEAB_ECOLI : 359- 404: innfq GKtIrsyDDAMsSiNKlma--NpslKiNatDKeAIvnAwkaFnaeDmG nkfaa CEAN_ECOLI : 234- 279: iknfh GRnIrsyNEAMaSlNKvla--NpkmKvNksDKdAIvnAwkqVnakDmA nkign CEA_CITFR : 438- 483: iknfq GKtIrsfDDAMaSlNKita--NpamKiNkaDRdALvnAwkhVdaqDmA nklgn CEIA_ECOLI : 484- 529: agqak GKkIrnvEEALkTyEKyradiNk--KiNakDRaAIaaAlesVklsDiS snlnr CEIB_ECOLI : 484- 529: asvsq GKqIksvDDALnAfDKfrnnlNk--KyNiqDRmAIskAleaInqvHmA enfkl CEIB_ECOLI : 484- 529: asvsq GKqIksvDDALnAfDKfrn--NlnkKyNiqDRmAIskAleaInqvHmA enfkl C 3: 68.8834 7( 7) G-[KR]-x-I-x(4)-[DE]-A-[LM]-x-[AST]-x-[DEN]-K-x(3,5)-N-x(1,3)-K-x-[NS]-x(2)-D-[KR]-x-A-[IL]-x(2)-A-x(3)-[FIV]-x(3)-[DH]-x-[AGS] Occurences: 7(7) CEA1_ECOLI : 380- 425: adksk GKkIgnvnEALaAfEKykdvlNk--KfSkaDRdAIfnAlasVkydDwA khldq CEA1_SHISO : 379- 424: adksk GKkIsnvnEALaAfEKykdvlNk--KfSkaDRdAIfnAleaVkyeDwA khldq CEAB_ECOLI : 359- 404: innfq GKtIrsydDAMsSiNKlma--NpslKiNatDKeAIvnAwkaFnaeDmG nkfaa CEAN_ECOLI : 234- 279: iknfh GRnIrsynEAMaSlNKvla--NpkmKvNksDKdAIvnAwkqVnakDmA nkign CEA_CITFR : 438- 483: iknfq GKtIrsfdDAMaSlNKita--NpamKiNkaDRdALvnAwkhVdaqDmA nklgn CEIA_ECOLI : 484- 529: agqak GKkIrnveEALkTyEKyradiNk--KiNakDRaAIaaAlesVklsDiS snlnr CEIB_ECOLI : 484- 529: asvsq GKqIksvdDALnAfDKfrnnlNk--KyNiqDRmAIskAleaInqvHmA enfkl CEIB_ECOLI : 484- 529: asvsq GKqIksvdDALnAfDKfrn--NlnkKyNiqDRmAIskAleaInqvHmA enfkl D 4: 65.7128 7( 7) G-[KR]-x-I-x(5)-A-[LM]-x-[AST]-x-[DEN]-K-x(3,5)-N-x(1,3)-K-x-[NS]-x(2)-D-[KR]-x-A-[IL]-x(2)-A-x(3)-[FIV]-x(3)-[DH]-x-[AGS] Occurences: 7(7) CEA1_ECOLI : 380- 425: adksk GKkIgnvneALaAfEKykdvlNk--KfSkaDRdAIfnAlasVkydDwA khldq CEA1_SHISO : 379- 424: adksk GKkIsnvneALaAfEKykdvlNk--KfSkaDRdAIfnAleaVkyeDwA khldq CEAB_ECOLI : 359- 404: innfq GKtIrsyddAMsSiNKlma--NpslKiNatDKeAIvnAwkaFnaeDmG nkfaa CEAN_ECOLI : 234- 279: iknfh GRnIrsyneAMaSlNKvla--NpkmKvNksDKdAIvnAwkqVnakDmA nkign CEA_CITFR : 438- 483: iknfq GKtIrsfddAMaSlNKita--NpamKiNkaDRdALvnAwkhVdaqDmA nklgn CEIA_ECOLI : 484- 529: agqak GKkIrnveeALkTyEKyradiNk--KiNakDRaAIaaAlesVklsDiS snlnr CEIB_ECOLI : 484- 529: asvsq GKqIksvddALnAfDKfrnnlNk--KyNiqDRmAIskAleaInqvHmA enfkl CEIB_ECOLI : 484- 529: asvsq GKqIksvddALnAfDKfrn--NlnkKyNiqDRmAIskAleaInqvHmA enfkl E 5: 59.5377 8( 7) N-x(1,3)-K-x-[NS]-x(2)-D-[KR]-x-A-[IL]-x(2)-A-x(3)-[FIV]-x(3)-[DH]-x-[AGS]-x(2)-[FIL]-x(2)-[FL]-[AGS]-[KR]-x-[FL]-x(2)-[AT]-[DG] Occurences: 8(7) CEA1_ECOLI : 401- 439: ykdvl Nk--KfSkaDRdAIfnAlasVkydDwAkhLdqFAKyLkiTG hvsfg CEA1_SHISO : 400- 438: ykdvl Nk--KfSkaDRdAIfnAleaVkyeDwAkhLdqFAKyLkiTG hvsfg CEAB_ECOLI : 378- 418: nklma NpslKiNatDKeAIvnAwkaFnaeDmGnkFaaLGKtFkaAD yaika CEAN_ECOLI : 253- 293: nkvla NpkmKvNksDKdAIvnAwkqVnakDmAnkIgnLGKaFkvAD laikv CEA_CITFR : 457- 497: nkita NpamKiNkaDRdALvnAwkhVdaqDmAnkLgnLSKaFkvAD vvmkv CEIA_ECOLI : 505- 543: yradi Nk--KiNakDRaAIaaAlesVklsDiSsnLnrFSRgLgyAG kftsl CEIB_ECOLI : 503- 543: dkfrn NlnkKyNiqDRmAIskAleaInqvHmAenFklFSKaFgfTG kvier CEIB_ECOLI : 505- 543: frnnl Nk--KyNiqDRmAIskAleaInqvHmAenFklFSKaFgfTG kvier F 6: 56.3677 7( 7) K-x-[NS]-x(2)-D-[KR]-x-A-[IL]-x(2)-A-x(3)-[FIV]-x(3)-[DH]-x-[AGS]-x(2)-[FIL]-x(2)-[FL]-[AGS]-[KR]-x-[FL]-x(2)-[AT]-[DG] Occurences: 7(7) CEA1_ECOLI : 403- 439: dvlnk KfSkaDRdAIfnAlasVkydDwAkhLdqFAKyLkiTG hvsfg CEA1_SHISO : 402- 438: dvlnk KfSkaDRdAIfnAleaVkyeDwAkhLdqFAKyLkiTG hvsfg CEAB_ECOLI : 382- 418: anpsl KiNatDKeAIvnAwkaFnaeDmGnkFaaLGKtFkaAD yaika CEAN_ECOLI : 257- 293: anpkm KvNksDKdAIvnAwkqVnakDmAnkIgnLGKaFkvAD laikv CEA_CITFR : 461- 497: anpam KiNkaDRdALvnAwkhVdaqDmAnkLgnLSKaFkvAD vvmkv CEIA_ECOLI : 507- 543: adink KiNakDRaAIaaAlesVklsDiSsnLnrFSRgLgyAG kftsl CEIB_ECOLI : 507- 543: nnlnk KyNiqDRmAIskAleaInqvHmAenFklFSKaFgfTG kvier G 7: 50.6633 7( 7) T-x-[DNQ]-x(3)-L-x(0,1)-L-x(1,2)-E-x(4)-[DGS]-x(2)-[ATV]-[AES]-x-[AV]-[AGV]-x(2)-[AIL]-[FL]-x-[ALV]-x(2)-[EGS]-x(3)-[GIL]-x(3)-[AILV]-x(4)-[GIV] Occurences: 7(7) CEA1_ECOLI : 457- 502: lkikd TgDwkpLfLtlEkkaaDagVSyVValLFsLlaGttlGiwgIaivtG ilcsy CEA1_SHISO : 456- 501: lkikd TgDwkpLfLtlEkkavDagVSyVVvlLFsVlaGttlGiwgIaivtG ilcaf CEAB_ECOLI : 436- 481: iegyq TgNwgpLmLevEswviSgmASaVAlsLFsLtlGsalIafgLsatvV gfvgv CEAN_ECOLI : 311- 356: iegyn TgNwgpLlLevEswiiGgvVAgVAisLFgAvlSflpIsglAvtalG vigim CEA_CITFR : 515- 560: iegye TgNwgpLmLevEswvlSgiASsVAlgIFsAtlGayaLslgVpaiaV giagi CEIA_ECOLI : 130- 174: daadi TrQefrL-LqaElreyGfrTEiAGydALrLhtEsrmLfadAdslrI sprea CEIB_ECOLI : 130- 174: daadi TrQefrL-LqaElreyGfrTEiAGydALrLhtEsrmLfadAdslrI sprea H 8: 36.6511 7( 7) A-[NQ]-[ANP]-x(2)-K-x(3,4)-D-x(0,2)-A-x(2)-[ENQ]-x(2)-K-x-[FIV]-x-[ADN]-x(2)-[LM] Occurences: 7(7) CEA1_ECOLI : 79- 102: kaaae AQAkaKanr-D--AltQrlKdIvNeaL rhnas CEA1_SHISO : 79- 102: kaaae AQAkaKanr-D--AltQhlKdIvNeaL rhnst CEAB_ECOLI : 377- 403: inklm ANPslKinatDkeAivNawKaFnAedM gnkfa CEAN_ECOLI : 252- 278: lnkvl ANPkmKvnksDkdAivNawKqVnAkdM ankig CEA_CITFR : 456- 482: lnkit ANPamKinkaDrdAlvNawKhVdAqdM anklg CEIA_ECOLI : 193- 218: krqkd AQNadKkaa-DmlAeyErrKgIlDtrL selek CEIB_ECOLI : 193- 218: krqkd AQNadKkaa-DmlAeyErrKgIlDtrL selek I 9: 35.9418 7( 7) T-[DEG]-[DN]-W-x-P-x(3,5)-E-x(4)-[DGSV]-x-[AGSV]-[AGV]-x(3)-[ASTV]-[AIV]-x-[ALV] Occurences: 7(7) CEA1_ECOLI : 457- 483: lkikd TGDWkPlfltlEkkaaDaGVsyvVAlL fslla CEA1_SHISO : 456- 482: lkikd TGDWkPlfltlEkkavDaGVsyvVVlL fsvla CEAB_ECOLI : 436- 460: iegyq TGNWgPlml--EveswViSGmasAVaL slfsl CEAN_ECOLI : 311- 337: iegyn TGNWgPlllevEswiiGgVVagvAIsL fgavl CEA_CITFR : 515- 539: iegye TGNWgPlml--EveswVlSGiasSVaL gifsa CEIA_ECOLI : 561- 587: gkavr TENWrPlfvktEtiiaGnAAtalVAlV fsilt CEIB_ECOLI : 561- 587: qkavk TDNWrPffvklEslaaGrAAsavTAwA fsvml J 10: 34.1465 7( 7) A-x-K-x(3,4)-A-x-[ADS]-x(3)-K-x-[ADEG]-[AEGN]-x(3)-[AT]-[FL]-x-[ASTV]-x(3)-[ADSV] Occurences: 7(7) CEA1_ECOLI : 194- 221: kavei AqKklsaAqSevvKmDGeikTLnSrlsS sihar CEA1_SHISO : 193- 220: ravev AqKnlaaAqSelaKvDEeinTLnTrlsS sihar CEAB_ECOLI : 394- 420: eaivn AwKafn-AeDmgnKfAAlgkTFkAadyA ikann CEAN_ECOLI : 269- 295: daivn AwKqvn-AkDmanKiGNlgkAFkVadlA ikvek CEA_CITFR : 473- 499: dalvn AwKhvd-AqDmanKlGNlskAFkVadvV mkvek CEIA_ECOLI : 98- 125: nkrte AgKrlsaAiAareKdENtlkTLrAgnaD aadit CEIB_ECOLI : 98- 125: nkrte AgKrlsaAiAareKdENtlkTLrAgnaD aadit K 11: 32.6688 7( 7) A-x-[ANV]-x-A-x(4)-[DNS]-A-x-[DT]-x(3)-K-x-[AGI]-[ANV]-x-[AEGS] Occurences: 7(7) CEA1_ECOLI : 79- 100: kaaae AqAkAkanrDAlTqrlKdIVnE alrhn CEA1_SHISO : 79- 100: kaaae AqAkAkanrDAlTqhlKdIVnE alrhn CEAB_ECOLI : 390- 411: atdke AiVnAwkafNAeDmgnKfAAlG ktfka CEAN_ECOLI : 265- 286: ksdkd AiVnAwkqvNAkDmanKiGNlG kafkv CEA_CITFR : 469- 490: kadrd AlVnAwkhvDAqDmanKlGNlS kafkv CEIA_ECOLI : 393- 414: tsaes AvNsArnnlSArTneqKhANdA lnall CEIB_ECOLI : 393- 414: tsaes AiNsArnnvSArTneqKhANdA lnall L 12: 31.7753 8( 7) L-x(0,1)-L-x(0,1)-E-x-E-[ENS]-x(3)-[AGQS]-[AGL]-x-[ADGSV]-x-[AEGNS]-x(2)-[AIL]-[AGSV] Occurences: 8(7) CEA1_ECOLI : 171- 191: eterq LkLaEaEEkrlAAlSeEakAV eiaqk CEA1_SHISO : 170- 190: eterq LkLaEdEEkrlAAlSeEarAV evaqk CEAB_ECOLI : 442- 461: gnwgp LmL-EvESwviSGmAsAvaLS lfslt CEAN_ECOLI : 317- 336: gnwgp LlL-EvESwiiGGvVaGvaIS lfgav CEAN_ECOLI : 317- 336: gnwgp L-LlEvESwiiGGvVaGvaIS lfgav CEAN_ECOLI : 318- 336: nwgpl L-L-EvESwiiGGvVaGvaIS lfgav CEA_CITFR : 521- 540: gnwgp LmL-EvESwvlSGiAsSvaLG ifsat CEIA_ECOLI : 418- 437: dalna L-LkEkENirnQLsGiNqkIA eekrk CEIB_ECOLI : 418- 437: dalna L-LkEkENirsQLaDiNqkIA eekrk M 13: 27.4002 7( 7) R-x(3,4)-A-x-[AEST]-[ANS]-x-[ANQ]-K-x(1,2)-A-N Occurences: 7(7) CEA1_ECOLI : 72- 86: aeqaa Raka-AaEAqAKakAN rdalt CEA1_SHISO : 72- 86: aeqaa Raka-AaEAqAKakAN rdalt CEAB_ECOLI : 363- 378: qgkti RsyddAmSSiNKlmAN pslki CEAN_ECOLI : 238- 253: hgrni RsyneAmASlNKvlAN pkmkv CEA_CITFR : 442- 457: qgkti RsfddAmASlNKitAN pamki CEIA_ECOLI : 398- 412: avnsa RnnlsArTNeQKh-AN dalna CEIB_ECOLI : 398- 412: ainsa RnnvsArTNeQKh-AN dalna N 14: 26.9152 7( 7) S-x(2,3)-G-x(3)-G-x(2)-G-x-[AGL]-[ILM]-[ILV]-x-[AGV] Occurences: 7(7) CEA1_ECOLI : 485- 502: vallf SllaGttlGiwGiAIVtG ilcsy CEA1_SHISO : 484- 501: vvllf SvlaGttlGiwGiAIVtG ilcaf CEAB_ECOLI : 430- 446: nirek Sie-GyqtGnwGpLMLeV eswvi CEAN_ECOLI : 305- 321: kirek Sie-GyntGnwGpLLLeV eswii CEA_CITFR : 509- 525: kvrek Sie-GyetGnwGpLMLeV eswvl CEIA_ECOLI : 589- 606: valvf SiltGsalGiiGyGLLmA vtgal CEIB_ECOLI : 589- 606: tawaf SvmlGtpvGilGfAIImA avsal O 15: 25.3684 7( 7) A-x(1,2)-K-x(3)-A-x(3)-A-x(1,2)-K-x-[AEGN]-[AN] Occurences: 7(7) CEA1_ECOLI : 60- 77: akwst AqlKktqAeqaAraKaAA eaqak CEA1_SHISO : 60- 77: akwst AqlKktqAeqaAraKaAA eaqak CEAB_ECOLI : 409- 425: gnkfa AlgKtfkAadyAi-KaNN ireks CEAN_ECOLI : 269- 284: daivn Aw-KqvnAkdmAn-KiGN lgkaf CEA_CITFR : 473- 488: dalvn Aw-KhvdAqdmAn-KlGN lskaf CEIA_ECOLI : 98- 114: nkrte Ag-KrlsAaiaAreKdEN tlktl CEIB_ECOLI : 98- 114: nkrte Ag-KrlsAaiaAreKdEN tlktl P 16: 23.7301 7( 7) A-x-[AEST]-[ANS]-x-[ANQ]-K-x(1,2)-A-N Occurences: 7(7) CEA1_ECOLI : 76- 86: araka AaEAqAKakAN rdalt CEA1_SHISO : 76- 86: araka AaEAqAKakAN rdalt CEAB_ECOLI : 368- 378: rsydd AmSSiNKlmAN pslki CEAN_ECOLI : 243- 253: rsyne AmASlNKvlAN pkmkv CEA_CITFR : 447- 457: rsfdd AmASlNKitAN pamki CEIA_ECOLI : 403- 412: rnnls ArTNeQKh-AN dalna CEIB_ECOLI : 403- 412: rnnvs ArTNeQKh-AN dalna Q 17: 23.6090 7( 7) K-x(2)-[KR]-x-A-x(2,3)-A-x-K-x(2)-[ADGNQ]-x(4)-[AENS] Occurences: 7(7) CEA1_ECOLI : 366- 385: ekyge KysKmAqelAdKskGkkigN vneal CEA1_SHISO : 365- 384: ekyge KysKmAqelAdKskGkkisN vneal CEAB_ECOLI : 412- 430: faalg KtfKaAdy-AiKanNirekS iegyq CEAN_ECOLI : 260- 279: kmkvn KsdKdAivnAwKqvNakdmA nkign CEA_CITFR : 464- 483: amkin KadRdAlvnAwKhvDaqdmA nklgn CEIA_ECOLI : 188- 206: ieqae KrqKdAqn-AdKkaAdmlaE yerrk CEIB_ECOLI : 188- 206: ieqae KrqKdAqn-AdKkaAdmlaE yerrk R 18: 23.2158 8( 7) D-A-[ILM]-[ANSTV]-[ANQS]-x(2)-K-x(2,3)-N Occurences: 8(7) CEA1_ECOLI : 88- 99: akanr DALTQrlKdivN ealrh CEA1_SHISO : 88- 99: akanr DALTQhlKdivN ealrh CEAB_ECOLI : 367- 378: irsyd DAMSSinKlmaN pslki CEAN_ECOLI : 264- 274: nksdk DAIVNawKqv-N akdma CEA_CITFR : 446- 457: irsfd DAMASlnKitaN pamki CEIA_ECOLI : 413- 424: qkhan DALNAllKekeN irnql CEIB_ECOLI : 413- 424: qkhan DALNAllKekeN irsql CEIB_ECOLI : 492- 502: iksvd DALNAfdKfr-N nlnkk CEIB_ECOLI : 492- 503: iksvd DALNAfdKfrnN lnkky S 19: 21.6984 7( 7) K-x(3)-A-x(3)-A-x(1,2)-K-x-[AEGN]-[AN] Occurences: 7(7) CEA1_ECOLI : 63- 77: staql KktqAeqaAraKaAA eaqak CEA1_SHISO : 63- 77: staql KktqAeqaAraKaAA eaqak CEAB_ECOLI : 412- 425: faalg KtfkAadyAi-KaNN ireks CEAN_ECOLI : 271- 284: ivnaw KqvnAkdmAn-KiGN lgkaf CEA_CITFR : 475- 488: lvnaw KhvdAqdmAn-KlGN lskaf CEIA_ECOLI : 100- 114: rteag KrlsAaiaAreKdEN tlktl CEIB_ECOLI : 100- 114: rteag KrlsAaiaAreKdEN tlktl T 20: 21.6756 7( 7) L-S-x(1,2)-I-x(0,1)-A-[ENRS]-[DENRS]-x-[ADENS] Occurences: 7(7) CEA1_ECOLI : 219- 229: tlnsr LSssIhARDaE mktla CEA1_SHISO : 218- 228: tlntr LSssIhARDaE tntls CEAB_ECOLI : 346- 355: dkyka LSreI-AENiN nfqgk CEAN_ECOLI : 366- 376: mtisy LSsfIdANRvS ninni CEA_CITFR : 530- 538: veswv LSg-I-ASSvA lgifs CEIA_ECOLI : 102- 112: eagkr LSaaIaAREkD entlk CEIB_ECOLI : 102- 112: eagkr LSaaIaAREkD entlk Number of patterns evaluated by Pratt:16005 Total running time: 11 seconds