------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file CDP_ALCOHOL_P_TRANSF PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CDP_ALCOHOL_P_TRANSF.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CPT1_YEAST 407 EPT1_YEAST 391 PGSA_BACSU 193 PGSA_ECOLI 181 PGSA_HAEIN 185 PGSA_PSEFL 195 PIS_YEAST 220 PSS_BACSU 177 PSS_YEAST 275 Pratt run started at Thu Feb 6 19:05:30 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 19.8503 9( 9) D-x(2)-D-G-x(1,2)-A-x(0,1)-R 2: 15.6802 9( 9) G-x(1,2)-L-x(0,1)-D-x(3)-D 3: 15.6802 9( 9) D-G-x(1,2)-A-x(0,1)-R 4: 12.5102 9( 9) G-x(2)-L-x(4)-D 5: 12.5102 9( 9) G-x(2)-A-R 6: 12.0102 12( 9) A-L-x(1,2)-L 7: 12.0102 12( 9) L-D-x(2,3)-A 8: 12.0102 9( 9) L-x(0,1)-D-x(2)-A 9: 12.0102 10( 9) G-x(2)-L-x(3,4)-D 10: 12.0102 11( 9) G-x(3)-D-x(2,3)-D 11: 11.5102 11( 9) F-x(3,4)-L-x(3,4)-F 12: 11.5102 12( 9) L-x(4,5)-I-x(0,1)-L 13: 11.5102 13( 9) L-x(5)-I-x(0,2)-L 14: 11.5102 14( 9) S-x(0,1)-A-x(0,1)-L 15: 11.5102 22( 9) L-x(3,4)-A-x(0,1)-L 16: 11.5102 12( 9) D-x(3,4)-G-x(1,2)-A 17: 11.5102 10( 9) G-x(1,2)-A-x(0,1)-R 18: 11.5102 12( 9) L-x(0,1)-D-x(2,3)-D 19: 11.5102 17( 9) A-x(3,4)-L-x(0,1)-L 20: 11.0102 18( 9) F-x(3,4)-A-x(1,3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 38.5729 9( 9) D-x(2)-D-G-x(1,2)-A-x(0,1)-R-x(4)-[GSTV]-[PST]-x(2)-[EG]-x(3)-[DH]-x-[FILV]-[ADT]-[ADS] B 2: 34.4028 9( 9) D-G-x(1,2)-A-x(0,1)-R-x(4)-[GSTV]-[PST]-x(2)-[EG]-x(3)-[DH]-x-[FILV]-[ADT]-[ADS] C 3: 30.2328 9( 9) G-x(1,2)-A-x(0,1)-R-x(4)-[GSTV]-[PST]-x(2)-[EG]-x(3)-[DH]-x-[FILV]-[ADT]-[ADS] D 4: 23.9571 9( 9) G-x(1,2)-L-x(0,1)-D-x(3)-D-x(4)-[AGSTV]-[AGILV]-x(4)-[FILV]-[ACTV] E 5: 19.7871 9( 9) L-x(0,1)-D-x(2,3)-D-x(4)-[AGSTV]-[AGILV]-x(4)-[FILV]-[ACTV] F 6: 17.4644 9( 9) G-x(2)-[FL]-D-x(2,3)-D-x(3)-[ASTV] G 7: 16.1802 9( 9) D-x(3)-G-x(1,2)-A-R H 8: 14.2494 9( 9) L-x(0,1)-D-x(2)-A-x(2)-[AILV] I 9: 12.5102 9( 9) G-x(2)-L-x(4)-D J 10: 12.5102 9( 9) G-x(2)-A-R K 11: 12.0102 12( 9) A-L-x(1,2)-L L 12: 12.0102 12( 9) L-D-x(2,3)-A M 13: 12.0102 10( 9) G-x(2)-L-x(3,4)-D N 14: 11.5102 9( 9) G-x(1,2)-L-x(0,1)-D O 15: 11.5102 11( 9) F-x(3,4)-L-x(3,4)-F P 16: 11.5102 12( 9) L-x(4,5)-I-x(0,1)-L Q 17: 11.5102 13( 9) L-x(5)-I-x(0,2)-L R 18: 11.5102 14( 9) S-x(0,1)-A-x(0,1)-L S 19: 11.5102 22( 9) L-x(3,4)-A-x(0,1)-L T 20: 11.5102 12( 9) L-x(0,1)-D-x(2,3)-D Best patterns with alignements: fitness hits(seqs) Pattern A 1: 38.5729 9( 9) D-x(2)-D-G-x(1,2)-A-x(0,1)-R-x(4)-[GSTV]-[PST]-x(2)-[EG]-x(3)-[DH]-x-[FILV]-[ADT]-[ADS] Occurences: 9(9) CPT1_YEAST : 110- 136: lyqtf DacDGmhArRtgqqGPlgElfdHcIDS inttl EPT1_YEAST : 96- 122: lyqtf DgcDGvhArRinqsGPlgElfdHsIDA instl PGSA_BACSU : 57- 82: iastt DwvDGyyA-RklnlVTnfGkflDpLAD kllvs PGSA_ECOLI : 45- 70: vaavt DwfDGflA-RrwnqSTrfGaflDpVAD kvlva PGSA_HAEIN : 46- 71: iagvt DwlDGylA-RkwkqTTrfGaflDpVAD kvmvv PGSA_PSEFL : 44- 69: faaat DwlDGylA-RrleqSTpfGaflDpVAD klmva PIS_YEAST : 56- 81: tscll DalDGtmA-RkynqVSslGavlDmVTD rssta PSS_BACSU : 42- 67: tgmfl DffDGmaA-RklnaVSdmGrelDsFAD lvtfg PSS_BACSU : 42- 67: tgmfl DffDGm-AaRklnaVSdmGrelDsFAD lvtfg PSS_YEAST : 126- 151: lgmcf DflDGrvA-RlrnrSSlmGqelDsLAD lvsfg B 2: 34.4028 9( 9) D-G-x(1,2)-A-x(0,1)-R-x(4)-[GSTV]-[PST]-x(2)-[EG]-x(3)-[DH]-x-[FILV]-[ADT]-[ADS] Occurences: 9(9) CPT1_YEAST : 113- 136: tfdac DGmhArRtgqqGPlgElfdHcIDS inttl EPT1_YEAST : 99- 122: tfdgc DGvhArRinqsGPlgElfdHsIDA instl PGSA_BACSU : 60- 82: ttdwv DGyyA-RklnlVTnfGkflDpLAD kllvs PGSA_ECOLI : 48- 70: vtdwf DGflA-RrwnqSTrfGaflDpVAD kvlva PGSA_HAEIN : 49- 71: vtdwl DGylA-RkwkqTTrfGaflDpVAD kvmvv PGSA_PSEFL : 47- 69: atdwl DGylA-RrleqSTpfGaflDpVAD klmva PIS_YEAST : 59- 81: lldal DGtmA-RkynqVSslGavlDmVTD rssta PSS_BACSU : 45- 67: fldff DGmaA-RklnaVSdmGrelDsFAD lvtfg PSS_BACSU : 45- 67: fldff DGm-AaRklnaVSdmGrelDsFAD lvtfg PSS_YEAST : 129- 151: cfdfl DGrvA-RlrnrSSlmGqelDsLAD lvsfg C 3: 30.2328 9( 9) G-x(1,2)-A-x(0,1)-R-x(4)-[GSTV]-[PST]-x(2)-[EG]-x(3)-[DH]-x-[FILV]-[ADT]-[ADS] Occurences: 9(9) CPT1_YEAST : 114- 136: fdacd GmhArRtgqqGPlgElfdHcIDS inttl EPT1_YEAST : 100- 122: fdgcd GvhArRinqsGPlgElfdHsIDA instl PGSA_BACSU : 61- 82: tdwvd GyyA-RklnlVTnfGkflDpLAD kllvs PGSA_ECOLI : 49- 70: tdwfd GflA-RrwnqSTrfGaflDpVAD kvlva PGSA_HAEIN : 50- 71: tdwld GylA-RkwkqTTrfGaflDpVAD kvmvv PGSA_PSEFL : 48- 69: tdwld GylA-RrleqSTpfGaflDpVAD klmva PIS_YEAST : 60- 81: ldald GtmA-RkynqVSslGavlDmVTD rssta PSS_BACSU : 46- 67: ldffd GmaA-RklnaVSdmGrelDsFAD lvtfg PSS_BACSU : 46- 67: ldffd Gm-AaRklnaVSdmGrelDsFAD lvtfg PSS_YEAST : 130- 151: fdfld GrvA-RlrnrSSlmGqelDsLAD lvsfg D 4: 23.9571 9( 9) G-x(1,2)-L-x(0,1)-D-x(3)-D-x(4)-[AGSTV]-[AGILV]-x(4)-[FILV]-[ACTV] Occurences: 9(9) CPT1_YEAST : 127- 147: qqgpl Ge-LfDhciDsintTLsmipVC smtgm EPT1_YEAST : 113- 133: qsgpl Ge-LfDhsiDainsTLsifiFA setgm PGSA_BACSU : 74- 94: lvtnf GkfL-DplaDkllvSAaliiLV qfdla PGSA_ECOLI : 62- 82: qstrf GafL-DpvaDkvlvAIamvlVT ehyhs PGSA_HAEIN : 63- 83: qttrf GafL-DpvaDkvmvVAalvlIV ehqht PGSA_PSEFL : 61- 81: qstpf GafL-DpvaDklmvAValvlLV qehgn PIS_YEAST : 73- 93: qvssl GavL-DmvtDrsstAGlmcfLC vqypq PSS_BACSU : 59- 79: avsdm GreL-DsfaDlvtfGVapsmLA ysval PSS_YEAST : 143- 163: rsslm GqeL-DslaDlvsfGVapaaIA faigf E 5: 19.7871 9( 9) L-x(0,1)-D-x(2,3)-D-x(4)-[AGSTV]-[AGILV]-x(4)-[FILV]-[ACTV] Occurences: 9(9) CPT1_YEAST : 129- 147: gplge LfDhciDsintTLsmipVC smtgm EPT1_YEAST : 115- 133: gplge LfDhsiDainsTLsifiFA setgm PGSA_BACSU : 77- 94: nfgkf L-DplaDkllvSAaliiLV qfdla PGSA_ECOLI : 65- 82: rfgaf L-DpvaDkvlvAIamvlVT ehyhs PGSA_HAEIN : 66- 83: rfgaf L-DpvaDkvmvVAalvlIV ehqht PGSA_PSEFL : 64- 81: pfgaf L-DpvaDklmvAValvlLV qehgn PIS_YEAST : 76- 93: slgav L-DmvtDrsstAGlmcfLC vqypq PSS_BACSU : 62- 79: dmgre L-DsfaDlvtfGVapsmLA ysval PSS_YEAST : 146- 163: lmgqe L-DslaDlvsfGVapaaIA faigf F 6: 17.4644 9( 9) G-x(2)-[FL]-D-x(2,3)-D-x(3)-[ASTV] Occurences: 9(9) CPT1_YEAST : 127- 139: qqgpl GelFDhciDsinT tlsmi EPT1_YEAST : 113- 125: qsgpl GelFDhsiDainS tlsif PGSA_BACSU : 74- 86: lvtnf GkfLDplaDkllV saali PGSA_ECOLI : 62- 74: qstrf GafLDpvaDkvlV aiamv PGSA_HAEIN : 63- 75: qttrf GafLDpvaDkvmV vaalv PGSA_PSEFL : 61- 73: qstpf GafLDpvaDklmV avalv PIS_YEAST : 73- 85: qvssl GavLDmvtDrssT aglmc PSS_BACSU : 38- 49: lfift GmfLDff-DgmaA rklna PSS_YEAST : 122- 133: ffill GmcFDfl-DgrvA rlrnr G 7: 16.1802 9( 9) D-x(3)-G-x(1,2)-A-R Occurences: 9(9) CPT1_YEAST : 110- 118: lyqtf DacdGmhAR rtgqq EPT1_YEAST : 96- 104: lyqtf DgcdGvhAR rinqs PGSA_BACSU : 57- 65: iastt DwvdGyyAR klnlv PGSA_ECOLI : 45- 53: vaavt DwfdGflAR rwnqs PGSA_HAEIN : 46- 54: iagvt DwldGylAR kwkqt PGSA_PSEFL : 44- 52: faaat DwldGylAR rleqs PIS_YEAST : 56- 64: tscll DaldGtmAR kynqv PSS_BACSU : 42- 50: tgmfl DffdGmaAR klnav PSS_YEAST : 126- 134: lgmcf DfldGrvAR lrnrs H 8: 14.2494 9( 9) L-x(0,1)-D-x(2)-A-x(2)-[AILV] Occurences: 9(9) CPT1_YEAST : 394- 401: dittf L-DiyAlsI khpke EPT1_YEAST : 378- 385: eftey L-DvyAlsI krskl PGSA_BACSU : 77- 84: nfgkf L-DplAdkL lvsaa PGSA_ECOLI : 65- 72: rfgaf L-DpvAdkV lvaia PGSA_HAEIN : 66- 73: rfgaf L-DpvAdkV mvvaa PGSA_PSEFL : 64- 71: pfgaf L-DpvAdkL mvava PIS_YEAST : 205- 213: raali LaDndAknA neknk PSS_BACSU : 62- 69: dmgre L-DsfAdlV tfgva PSS_YEAST : 146- 153: lmgqe L-DslAdlV sfgva I 9: 12.5102 9( 9) G-x(2)-L-x(4)-D Occurences: 9(9) CPT1_YEAST : 102- 110: fsyai GlfLyqtfD acdgm EPT1_YEAST : 88- 96: fsyal GvfLyqtfD gcdgv PGSA_BACSU : 74- 82: lvtnf GkfLdplaD kllvs PGSA_ECOLI : 62- 70: qstrf GafLdpvaD kvlva PGSA_HAEIN : 63- 71: qttrf GafLdpvaD kvmvv PGSA_PSEFL : 61- 69: qstpf GafLdpvaD klmva PIS_YEAST : 73- 81: qvssl GavLdmvtD rssta PSS_BACSU : 59- 67: avsdm GreLdsfaD lvtfg PSS_YEAST : 143- 151: rsslm GqeLdslaD lvsfg J 10: 12.5102 9( 9) G-x(2)-A-R Occurences: 9(9) CPT1_YEAST : 114- 118: fdacd GmhAR rtgqq EPT1_YEAST : 100- 104: fdgcd GvhAR rinqs PGSA_BACSU : 61- 65: tdwvd GyyAR klnlv PGSA_ECOLI : 49- 53: tdwfd GflAR rwnqs PGSA_HAEIN : 50- 54: tdwld GylAR kwkqt PGSA_PSEFL : 48- 52: tdwld GylAR rleqs PIS_YEAST : 60- 64: ldald GtmAR kynqv PSS_BACSU : 46- 50: ldffd GmaAR klnav PSS_YEAST : 130- 134: fdfld GrvAR lrnrs K 11: 12.0102 12( 9) A-L-x(1,2)-L Occurences: 12(9) CPT1_YEAST : 306- 309: sfisl ALi-L sigfs EPT1_YEAST : 350- 354: nkivf ALswL gfgls PGSA_BACSU : 89- 93: llvsa ALiiL vqfdl PGSA_BACSU : 147- 150: iiavs ALl-L hnlpf PGSA_ECOLI : 136- 140: taqmv ALawL lwrpn PGSA_HAEIN : 78- 81: vmvva ALv-L ivehq PGSA_HAEIN : 137- 141: taqml ALggL lwryn PGSA_PSEFL : 76- 79: lmvav ALv-L lvqeh PGSA_PSEFL : 76- 80: lmvav ALvlL vqehg PGSA_PSEFL : 136- 140: aaqml ALviL lanpp PIS_YEAST : 202- 205: qlkra ALi-L adnda PSS_BACSU : 83- 87: laysv ALytL pfigi PSS_YEAST : 220- 223: mpttl ALv-L gmayc L 12: 12.0102 12( 9) L-D-x(2,3)-A Occurences: 12(9) CPT1_YEAST : 394- 398: dittf LDiy-A lsikh EPT1_YEAST : 378- 382: eftey LDvy-A lsikr PGSA_BACSU : 77- 81: nfgkf LDpl-A dkllv PGSA_ECOLI : 65- 69: rfgaf LDpv-A dkvlv PGSA_HAEIN : 48- 53: gvtdw LDgylA rkwkq PGSA_HAEIN : 66- 70: rfgaf LDpv-A dkvmv PGSA_PSEFL : 46- 51: aatdw LDgylA rrleq PGSA_PSEFL : 64- 68: pfgaf LDpv-A dklmv PIS_YEAST : 58- 63: cllda LDgtmA rkynq PSS_BACSU : 62- 66: dmgre LDsf-A dlvtf PSS_YEAST : 128- 133: mcfdf LDgrvA rlrnr PSS_YEAST : 146- 150: lmgqe LDsl-A dlvsf M 13: 12.0102 10( 9) G-x(2)-L-x(3,4)-D Occurences: 10(9) CPT1_YEAST : 102- 110: fsyai GlfLyqtfD acdgm EPT1_YEAST : 88- 96: fsyal GvfLyqtfD gcdgv PGSA_BACSU : 74- 82: lvtnf GkfLdplaD kllvs PGSA_ECOLI : 62- 70: qstrf GafLdpvaD kvlva PGSA_HAEIN : 63- 71: qttrf GafLdpvaD kvmvv PGSA_PSEFL : 61- 69: qstpf GafLdpvaD klmva PIS_YEAST : 73- 81: qvssl GavLdmvtD rssta PSS_BACSU : 38- 45: lfift GmfLdff-D gmaar PSS_BACSU : 59- 67: avsdm GreLdsfaD lvtfg PSS_YEAST : 143- 151: rsslm GqeLdslaD lvsfg N 14: 11.5102 9( 9) G-x(1,2)-L-x(0,1)-D Occurences: 9(9) CPT1_YEAST : 127- 131: qqgpl Ge-LfD hcids EPT1_YEAST : 113- 117: qsgpl Ge-LfD hsida PGSA_BACSU : 74- 78: lvtnf GkfL-D pladk PGSA_ECOLI : 62- 66: qstrf GafL-D pvadk PGSA_HAEIN : 63- 67: qttrf GafL-D pvadk PGSA_PSEFL : 61- 65: qstpf GafL-D pvadk PIS_YEAST : 73- 77: qvssl GavL-D mvtdr PSS_BACSU : 59- 63: avsdm GreL-D sfadl PSS_YEAST : 143- 147: rsslm GqeL-D sladl O 15: 11.5102 11( 9) F-x(3,4)-L-x(3,4)-F Occurences: 11(9) CPT1_YEAST : 293- 302: yfssi Ftlv-LiqpsF islal EPT1_YEAST : 140- 149: etgmg Fsyn-LmlsqF amltn PGSA_BACSU : 162- 172: lvsfp FadlaLwvavF ftvvs PGSA_ECOLI : 2- 11: q FniptLltl-F rvili PGSA_ECOLI : 11- 19: tlltl Frvi-Lipf-F vlvfy PGSA_HAEIN : 12- 20: iflti Frvi-Lipf-F viafy PGSA_PSEFL : 147- 157: anppa FtfwvLlgyaF lliag PGSA_PSEFL : 149- 157: ppaft Fwvl-Lgya-F lliag PIS_YEAST : 160- 169: afnel Fyag-LylqlF snsat PSS_BACSU : 126- 136: gmpip FagmcLvilsF tynpi PSS_YEAST : 117- 125: vqrah Ffil-Lgmc-F dfldg P 16: 11.5102 12( 9) L-x(4,5)-I-x(0,1)-L Occurences: 12(9) CPT1_YEAST : 297- 305: iftlv LiqpsfIsL alils EPT1_YEAST : 324- 332: fnapm LiplcqIvL ykicl PGSA_BACSU : 85- 93: ladkl LvsaalIiL vqfdl PGSA_ECOLI : 8- 15: niptl LtlfrvI-L ipffv PGSA_HAEIN : 9- 16: nipif LtifrvI-L ipffv PGSA_HAEIN : 156- 163: iaaii LlyiaaI-L tiwsm PGSA_HAEIN : 157- 163: aaiil Lyiaa-I-L tiwsm PGSA_PSEFL : 13- 20: tvlrv LlipifI-L lfylp PGSA_PSEFL : 13- 21: tvlrv LlipifIlL fylpy PGSA_PSEFL : 14- 20: vlrvl Lipif-I-L lfylp PGSA_PSEFL : 14- 21: vlrvl Lipif-IlL fylpy PIS_YEAST : 198- 205: anvvq LkraalI-L adnda PSS_BACSU : 87- 93: valyt Lpfig-I-L calty PSS_YEAST : 249- 256: redqi LefhpiI-L vffih PSS_YEAST : 249- 256: redqi Lefhp-IiL vffih Q 17: 11.5102 13( 9) L-x(5)-I-x(0,2)-L Occurences: 13(9) CPT1_YEAST : 297- 305: iftlv LiqpsfIs-L alils EPT1_YEAST : 324- 332: fnapm LiplcqIv-L ykicl PGSA_BACSU : 15- 24: laria LipifmIimL apfdw PGSA_BACSU : 85- 93: ladkl LvsaalIi-L vqfdl PGSA_ECOLI : 8- 15: niptl LtlfrvI--L ipffv PGSA_HAEIN : 9- 16: nipif LtifrvI--L ipffv PGSA_HAEIN : 156- 163: iaaii LlyiaaI--L tiwsm PGSA_HAEIN : 163- 172: yiaai LtiwsmIqyL qvakg PGSA_PSEFL : 13- 20: tvlrv LlipifI--L lfylp PGSA_PSEFL : 13- 21: tvlrv LlipifIl-L fylpy PIS_YEAST : 198- 205: anvvq LkraalI--L adnda PSS_BACSU : 84- 93: aysva LytlpfIgiL calty PSS_YEAST : 79- 88: smmrn LhmadyItmL ngfsg PSS_YEAST : 249- 256: redqi LefhpiI--L vffih R 18: 11.5102 14( 9) S-x(0,1)-A-x(0,1)-L Occurences: 14(9) CPT1_YEAST : 304- 307: qpsfi SlA-L ilsig CPT1_YEAST : 365- 367: kgsiv S-A-L vwmgl EPT1_YEAST : 84- 87: rwtyf SyA-L gvfly EPT1_YEAST : 275- 278: fayya SiA-L lvwmq EPT1_YEAST : 275- 279: fayya SiAlL vwmqp PGSA_BACSU : 87- 90: dkllv SaA-L iilvq PGSA_BACSU : 87- 90: dkllv S-AaL iilvq PGSA_BACSU : 146- 148: qiiav S-A-L llhnl PGSA_BACSU : 146- 149: qiiav S-AlL lhnlp PGSA_ECOLI : 105- 107: reiii S-A-L rewma PGSA_HAEIN : 106- 108: reiii S-A-L rewma PGSA_PSEFL : 104- 106: reivv S-A-L rewma PIS_YEAST : 84- 88: vtdrs StAgL mcflc PSS_BACSU : 30- 33: yhnih S-AvL fiftg PSS_BACSU : 64- 68: greld SfAdL vtfgv PSS_BACSU : 81- 84: smlay SvA-L ytlpf PSS_YEAST : 148- 152: gqeld SlAdL vsfgv S 19: 11.5102 22( 9) L-x(3,4)-A-x(0,1)-L Occurences: 22(9) CPT1_YEAST : 394- 399: dittf Ldiy-A-L sikhp EPT1_YEAST : 146- 152: synlm Lsqf-AmL tnfyl EPT1_YEAST : 229- 234: lavfg Lvmn-A-L sakrn EPT1_YEAST : 378- 383: eftey Ldvy-A-L sikrs PGSA_BACSU : 10- 15: pnkit Lari-A-L ipifm PGSA_BACSU : 84- 90: pladk LlvsaA-L iilvq PGSA_BACSU : 84- 90: pladk Llvs-AaL iilvq PGSA_BACSU : 85- 90: ladkl Lvsa-A-L iilvq PGSA_ECOLI : 107- 114: iiisa LrewmAeL gkrss PGSA_ECOLI : 155- 162: yagia LffvaAvL tlwsm PGSA_ECOLI : 171- 178: smlqy LsaarAdL ldq PGSA_HAEIN : 108- 115: iiisa LrewmAeL gersk PGSA_HAEIN : 156- 163: iaaii LlyiaAiL tiwsm PGSA_HAEIN : 157- 163: aaiil Lyia-AiL tiwsm PGSA_PSEFL : 71- 77: pvadk LmvavA-L vllvq PGSA_PSEFL : 106- 113: ivvsa LrewmAeL grtrp PGSA_PSEFL : 152- 158: ftfwv Llgy-AfL liagg PIS_YEAST : 198- 203: anvvq Lkra-A-L iladn PSS_BACSU : 62- 68: dmgre Ldsf-AdL vtfgv PSS_BACSU : 78- 84: vapsm LaysvA-L ytlpf PSS_YEAST : 128- 135: mcfdf LdgrvArL rnrss PSS_YEAST : 146- 152: lmgqe Ldsl-AdL vsfgv PSS_YEAST : 182- 188: lsffv Lcgl-ArL arfnv T 20: 11.5102 12( 9) L-x(0,1)-D-x(2,3)-D Occurences: 12(9) CPT1_YEAST : 129- 135: gplge LfDhciD sintt EPT1_YEAST : 115- 121: gplge LfDhsiD ainst PGSA_BACSU : 77- 82: nfgkf L-DplaD kllvs PGSA_ECOLI : 65- 70: rfgaf L-DpvaD kvlva PGSA_HAEIN : 66- 71: rfgaf L-DpvaD kvmvv PGSA_PSEFL : 64- 69: pfgaf L-DpvaD klmva PIS_YEAST : 54- 59: ystsc LlDal-D gtmar PIS_YEAST : 55- 59: stscl L-Dal-D gtmar PIS_YEAST : 76- 81: slgav L-DmvtD rssta PSS_BACSU : 41- 45: ftgmf L-Dff-D gmaar PSS_BACSU : 62- 67: dmgre L-DsfaD lvtfg PSS_YEAST : 146- 151: lmgqe L-DslaD lvsfg Number of patterns evaluated by Pratt:1339 Total running time: 1 seconds