------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file CBFB_NFYA PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CBFB_NFYA.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CBFB_HUMAN 347 CBFB_MOUSE 346 CBFB_RAT 341 HAP2_YEAST 265 PHP2_SCHPO 334 Pratt run started at Thu Feb 6 19:05:26 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 86.5711 8( 5) E-x(2,3)-Y-V-N-A-K-Q-Y-x-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E 2: 82.9010 5( 5) Y-V-N-A-K-Q-Y-x-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E 3: 78.7310 5( 5) V-N-A-K-Q-Y-x-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E 4: 74.5609 5( 5) N-A-K-Q-Y-x-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E 5: 70.3909 5( 5) A-K-Q-Y-x-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E 6: 66.2208 5( 5) K-Q-Y-x-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E 7: 62.5508 5( 5) L-x-E-S-R-H-x-H-A-M-x-R-x-R-G-x-G-G-R-F 8: 62.0508 5( 5) Q-Y-x-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E 9: 57.8807 5( 5) Y-x-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E 10: 57.3807 5( 5) K-x(0,1)-Y-L-H-E-S-R-H-x-H-A-M-x(0,1)-R-x(5)-G-x(2)-F 11: 57.3807 6( 5) Y-x(0,1)-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E 12: 54.2107 5( 5) E-x-R-H-x-H-A-M-x-R-x-R-G-x-G-G-R-F 13: 53.7107 5( 5) R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E 14: 53.2107 5( 5) Y-L-H-E-S-R-H-x-H-A-M-x(0,1)-R-x(0,1)-R-x(2)-G 15: 49.5406 5( 5) I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E 16: 49.0406 5( 5) L-H-E-S-R-H-x-H-A-M-x(0,1)-R-x(0,1)-R-x(2)-G 17: 45.3706 5( 5) L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E 18: 44.8706 5( 5) H-E-S-R-H-x-H-A-M-x(0,1)-R-x(0,1)-R-x(2)-G 19: 41.7005 5( 5) R-x(3)-A-M-x-R-x-R-G-x-G-G-R-F 20: 41.2005 5( 5) S-x(3,4)-A-M-x-R-x-R-G-x-G-G-R-F Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 122.5844 5( 5) Y-L-H-E-S-R-H-[KR]-H-A-M-x(0,1)-R-x(0,1)-R-G-[EP]-G-G-R-F-[FL]-[ST]-[AP]-x-[EK]-x(4)-[HKR]-x(2)-[DEK]-[APS]-[AGN]-[AEQ]-[AS]-[AD]-[ADE]-[ENP]-[ADG]-x-[ST]-x(3)-[DKR] B 2: 118.4144 5( 5) L-H-E-S-R-H-[KR]-H-A-M-x(0,1)-R-x(0,1)-R-G-[EP]-G-G-R-F-[FL]-[ST]-[AP]-x-[EK]-x(4)-[HKR]-x(2)-[DEK]-[APS]-[AGN]-[AEQ]-[AS]-[AD]-[ADE]-[ENP]-[ADG]-x-[ST]-x(3)-[DKR] C 3: 115.2443 5( 5) L-x-E-S-R-H-[KR]-H-A-M-x-R-x-R-G-[EP]-G-G-R-F-[FL]-[ST]-[AP]-x-[EK]-x(4)-[HKR]-x(2)-[DEK]-[APS]-[AGN]-[AEQ]-[AS]-[AD]-[ADE]-[ENP]-[ADG]-x-[ST]-x(3)-[DKR] D 4: 114.2443 5( 5) H-E-S-R-H-[KR]-H-A-M-x(0,1)-R-x(0,1)-R-G-[EP]-G-G-R-F-[FL]-[ST]-[AP]-x-[EK]-x(4)-[HKR]-x(2)-[DEK]-[APS]-[AGN]-[AEQ]-[AS]-[AD]-[ADE]-[ENP]-[ADG]-x-[ST]-x(3)-[DKR] E 5: 106.9042 5( 5) E-x-R-H-[KR]-H-A-M-x-R-x-R-G-[EP]-G-G-R-F-[FL]-[ST]-[AP]-x-[EK]-x(4)-[HKR]-x(2)-[DEK]-[APS]-[AGN]-[AEQ]-[AS]-[AD]-[ADE]-[ENP]-[ADG]-x-[ST]-x(3)-[DKR] F 6: 99.1896 8( 5) E-x(2,3)-Y-V-N-A-K-Q-Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K G 7: 95.5195 5( 5) Y-V-N-A-K-Q-Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K H 8: 91.3495 5( 5) V-N-A-K-Q-Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K I 9: 91.1459 5( 5) R-x(3)-A-M-x-R-x-R-G-[EP]-G-G-R-F-[FL]-[ST]-[AP]-x-[EK]-x(4)-[HKR]-x(2)-[DEK]-[APS]-[AGN]-[AEQ]-[AS]-[AD]-[ADE]-[ENP]-[ADG]-x-[ST]-x(3)-[DKR] J 10: 90.6459 5( 5) S-x(3,4)-A-M-x-R-x-R-G-[EP]-G-G-R-F-[FL]-[ST]-[AP]-x-[EK]-x(4)-[HKR]-x(2)-[DEK]-[APS]-[AGN]-[AEQ]-[AS]-[AD]-[ADE]-[ENP]-[ADG]-x-[ST]-x(3)-[DKR] K 11: 87.1794 5( 5) N-A-K-Q-Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K L 12: 83.0094 5( 5) A-K-Q-Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K M 13: 78.8393 5( 5) K-Q-Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K N 14: 76.1377 5( 5) K-x(0,1)-Y-L-H-E-S-R-H-[KR]-H-A-M-x(0,1)-R-[KR]-x(2)-[EG]-x-G-x(2)-F-x-[PT]-x-[ADE]-[EK] O 15: 74.6693 5( 5) Q-Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K P 16: 70.4992 5( 5) Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K Q 17: 66.8267 6( 5) Y-x(0,1)-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K R 18: 63.1567 5( 5) R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K S 19: 58.9866 5( 5) I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K T 20: 54.8166 5( 5) L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K Best patterns with alignements: fitness hits(seqs) Pattern A 1: 122.5844 5( 5) Y-L-H-E-S-R-H-[KR]-H-A-M-x(0,1)-R-x(0,1)-R-G-[EP]-G-G-R-F-[FL]-[ST]-[AP]-x-[EK]-x(4)-[HKR]-x(2)-[DEK]-[APS]-[AGN]-[AEQ]-[AS]-[AD]-[ADE]-[ENP]-[ADG]-x-[ST]-x(3)-[DKR] Occurences: 5(5) CBFB_HUMAN : 298- 345: kerrk YLHESRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs CBFB_MOUSE : 297- 344: kerrk YLHESRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs CBFB_RAT : 292- 339: kerrk YLHESRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs HAP2_YEAST : 194- 241: rerkp YLHESRHKHAMrRpRGEGGRFLTAaEikamKskKSGASDDPDdShedK kittk PHP2_SCHPO : 44- 91: ttkkp YLHESRHKHAMrRpRGPGGRFLTAdKvsklRaqEAAEAAANGgStgdD vnatn B 2: 118.4144 5( 5) L-H-E-S-R-H-[KR]-H-A-M-x(0,1)-R-x(0,1)-R-G-[EP]-G-G-R-F-[FL]-[ST]-[AP]-x-[EK]-x(4)-[HKR]-x(2)-[DEK]-[APS]-[AGN]-[AEQ]-[AS]-[AD]-[ADE]-[ENP]-[ADG]-x-[ST]-x(3)-[DKR] Occurences: 5(5) CBFB_HUMAN : 299- 345: errky LHESRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs CBFB_MOUSE : 298- 344: errky LHESRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs CBFB_RAT : 293- 339: errky LHESRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs HAP2_YEAST : 195- 241: erkpy LHESRHKHAMrRpRGEGGRFLTAaEikamKskKSGASDDPDdShedK kittk PHP2_SCHPO : 45- 91: tkkpy LHESRHKHAMrRpRGPGGRFLTAdKvsklRaqEAAEAAANGgStgdD vnatn C 3: 115.2443 5( 5) L-x-E-S-R-H-[KR]-H-A-M-x-R-x-R-G-[EP]-G-G-R-F-[FL]-[ST]-[AP]-x-[EK]-x(4)-[HKR]-x(2)-[DEK]-[APS]-[AGN]-[AEQ]-[AS]-[AD]-[ADE]-[ENP]-[ADG]-x-[ST]-x(3)-[DKR] Occurences: 5(5) CBFB_HUMAN : 299- 345: errky LhESRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs CBFB_MOUSE : 298- 344: errky LhESRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs CBFB_RAT : 293- 339: errky LhESRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs HAP2_YEAST : 195- 241: erkpy LhESRHKHAMrRpRGEGGRFLTAaEikamKskKSGASDDPDdShedK kittk PHP2_SCHPO : 45- 91: tkkpy LhESRHKHAMrRpRGPGGRFLTAdKvsklRaqEAAEAAANGgStgdD vnatn D 4: 114.2443 5( 5) H-E-S-R-H-[KR]-H-A-M-x(0,1)-R-x(0,1)-R-G-[EP]-G-G-R-F-[FL]-[ST]-[AP]-x-[EK]-x(4)-[HKR]-x(2)-[DEK]-[APS]-[AGN]-[AEQ]-[AS]-[AD]-[ADE]-[ENP]-[ADG]-x-[ST]-x(3)-[DKR] Occurences: 5(5) CBFB_HUMAN : 300- 345: rrkyl HESRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs CBFB_MOUSE : 299- 344: rrkyl HESRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs CBFB_RAT : 294- 339: rrkyl HESRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs HAP2_YEAST : 196- 241: rkpyl HESRHKHAMrRpRGEGGRFLTAaEikamKskKSGASDDPDdShedK kittk PHP2_SCHPO : 46- 91: kkpyl HESRHKHAMrRpRGPGGRFLTAdKvsklRaqEAAEAAANGgStgdD vnatn E 5: 106.9042 5( 5) E-x-R-H-[KR]-H-A-M-x-R-x-R-G-[EP]-G-G-R-F-[FL]-[ST]-[AP]-x-[EK]-x(4)-[HKR]-x(2)-[DEK]-[APS]-[AGN]-[AEQ]-[AS]-[AD]-[ADE]-[ENP]-[ADG]-x-[ST]-x(3)-[DKR] Occurences: 5(5) CBFB_HUMAN : 301- 345: rkylh EsRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs CBFB_MOUSE : 300- 344: rkylh EsRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs CBFB_RAT : 295- 339: rkylh EsRHRHAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs HAP2_YEAST : 197- 241: kpylh EsRHKHAMrRpRGEGGRFLTAaEikamKskKSGASDDPDdShedK kittk PHP2_SCHPO : 47- 91: kpylh EsRHKHAMrRpRGPGGRFLTAdKvsklRaqEAAEAAANGgStgdD vnatn F 6: 99.1896 8( 5) E-x(2,3)-Y-V-N-A-K-Q-Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K Occurences: 8(5) CBFB_HUMAN : 262- 297: aemle EeplYVNAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_HUMAN : 263- 297: emlee Epl-YVNAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_MOUSE : 261- 296: aemle EeplYVNAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_MOUSE : 262- 296: emlee Epl-YVNAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_RAT : 256- 291: aemle EeplYVNAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_RAT : 257- 291: emlee Epl-YVNAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes HAP2_YEAST : 158- 192: gtaia EqpfYVNAKQYYRILKRRyARAKLE-EklrIsRerK pylhe PHP2_SCHPO : 8- 41: pyepv Egl-YVNAKQYHRILKRReARAKLE-ErlrGvQttK kpylh G 7: 95.5195 5( 5) Y-V-N-A-K-Q-Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K Occurences: 5(5) CBFB_HUMAN : 266- 297: eeepl YVNAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_MOUSE : 265- 296: eeepl YVNAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_RAT : 260- 291: eeepl YVNAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes HAP2_YEAST : 162- 192: aeqpf YVNAKQYYRILKRRyARAKLE-EklrIsRerK pylhe PHP2_SCHPO : 11- 41: pvegl YVNAKQYHRILKRReARAKLE-ErlrGvQttK kpylh H 8: 91.3495 5( 5) V-N-A-K-Q-Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K Occurences: 5(5) CBFB_HUMAN : 267- 297: eeply VNAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_MOUSE : 266- 296: eeply VNAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_RAT : 261- 291: eeply VNAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes HAP2_YEAST : 163- 192: eqpfy VNAKQYYRILKRRyARAKLE-EklrIsRerK pylhe PHP2_SCHPO : 12- 41: vegly VNAKQYHRILKRReARAKLE-ErlrGvQttK kpylh I 9: 91.1459 5( 5) R-x(3)-A-M-x-R-x-R-G-[EP]-G-G-R-F-[FL]-[ST]-[AP]-x-[EK]-x(4)-[HKR]-x(2)-[DEK]-[APS]-[AGN]-[AEQ]-[AS]-[AD]-[ADE]-[ENP]-[ADG]-x-[ST]-x(3)-[DKR] Occurences: 5(5) CBFB_HUMAN : 303- 345: ylhes RhrhAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs CBFB_MOUSE : 302- 344: ylhes RhrhAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs CBFB_RAT : 297- 339: ylhes RhrhAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs HAP2_YEAST : 199- 241: ylhes RhkhAMrRpRGEGGRFLTAaEikamKskKSGASDDPDdShedK kittk PHP2_SCHPO : 49- 91: ylhes RhkhAMrRpRGPGGRFLTAdKvsklRaqEAAEAAANGgStgdD vnatn J 10: 90.6459 5( 5) S-x(3,4)-A-M-x-R-x-R-G-[EP]-G-G-R-F-[FL]-[ST]-[AP]-x-[EK]-x(4)-[HKR]-x(2)-[DEK]-[APS]-[AGN]-[AEQ]-[AS]-[AD]-[ADE]-[ENP]-[ADG]-x-[ST]-x(3)-[DKR] Occurences: 5(5) CBFB_HUMAN : 302- 345: kylhe SrhrhAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs CBFB_MOUSE : 301- 344: kylhe SrhrhAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs CBFB_RAT : 296- 339: kylhe SrhrhAMaRkRGEGGRFFSPkEkdspHmqDPNQADEEAmTqiiR vs HAP2_YEAST : 198- 241: pylhe SrhkhAMrRpRGEGGRFLTAaEikamKskKSGASDDPDdShedK kittk PHP2_SCHPO : 48- 91: pylhe SrhkhAMrRpRGPGGRFLTAdKvsklRaqEAAEAAANGgStgdD vnatn K 11: 87.1794 5( 5) N-A-K-Q-Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K Occurences: 5(5) CBFB_HUMAN : 268- 297: eplyv NAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_MOUSE : 267- 296: eplyv NAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_RAT : 262- 291: eplyv NAKQYHRILKRRqARAKLEaEgkiPkErrK ylhes HAP2_YEAST : 164- 192: qpfyv NAKQYYRILKRRyARAKLE-EklrIsRerK pylhe PHP2_SCHPO : 13- 41: eglyv NAKQYHRILKRReARAKLE-ErlrGvQttK kpylh L 12: 83.0094 5( 5) A-K-Q-Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K Occurences: 5(5) CBFB_HUMAN : 269- 297: plyvn AKQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_MOUSE : 268- 296: plyvn AKQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_RAT : 263- 291: plyvn AKQYHRILKRRqARAKLEaEgkiPkErrK ylhes HAP2_YEAST : 165- 192: pfyvn AKQYYRILKRRyARAKLE-EklrIsRerK pylhe PHP2_SCHPO : 14- 41: glyvn AKQYHRILKRReARAKLE-ErlrGvQttK kpylh M 13: 78.8393 5( 5) K-Q-Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K Occurences: 5(5) CBFB_HUMAN : 270- 297: lyvna KQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_MOUSE : 269- 296: lyvna KQYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_RAT : 264- 291: lyvna KQYHRILKRRqARAKLEaEgkiPkErrK ylhes HAP2_YEAST : 166- 192: fyvna KQYYRILKRRyARAKLE-EklrIsRerK pylhe PHP2_SCHPO : 15- 41: lyvna KQYHRILKRReARAKLE-ErlrGvQttK kpylh N 14: 76.1377 5( 5) K-x(0,1)-Y-L-H-E-S-R-H-[KR]-H-A-M-x(0,1)-R-[KR]-x(2)-[EG]-x-G-x(2)-F-x-[PT]-x-[ADE]-[EK] Occurences: 5(5) CBFB_HUMAN : 297- 324: pkerr K-YLHESRHRHAMaRKrgEgGrfFsPkEK dsphm CBFB_MOUSE : 296- 323: pkerr K-YLHESRHRHAMaRKrgEgGrfFsPkEK dsphm CBFB_RAT : 291- 318: pkerr K-YLHESRHRHAMaRKrgEgGrfFsPkEK dsphm HAP2_YEAST : 192- 219: isrer KpYLHESRHKHAM-RRprGeGgrFlTaAE ikamk PHP2_SCHPO : 42- 69: vqttk KpYLHESRHKHAM-RRprGpGgrFlTaDK vsklr O 15: 74.6693 5( 5) Q-Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K Occurences: 5(5) CBFB_HUMAN : 271- 297: yvnak QYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_MOUSE : 270- 296: yvnak QYHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_RAT : 265- 291: yvnak QYHRILKRRqARAKLEaEgkiPkErrK ylhes HAP2_YEAST : 167- 192: yvnak QYYRILKRRyARAKLE-EklrIsRerK pylhe PHP2_SCHPO : 16- 41: yvnak QYHRILKRReARAKLE-ErlrGvQttK kpylh P 16: 70.4992 5( 5) Y-[HY]-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K Occurences: 5(5) CBFB_HUMAN : 272- 297: vnakq YHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_MOUSE : 271- 296: vnakq YHRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_RAT : 266- 291: vnakq YHRILKRRqARAKLEaEgkiPkErrK ylhes HAP2_YEAST : 168- 192: vnakq YYRILKRRyARAKLE-EklrIsRerK pylhe PHP2_SCHPO : 17- 41: vnakq YHRILKRReARAKLE-ErlrGvQttK kpylh Q 17: 66.8267 6( 5) Y-x(0,1)-R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K Occurences: 6(5) CBFB_HUMAN : 272- 297: vnakq YhRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_MOUSE : 271- 296: vnakq YhRILKRRqARAKLEaEgkiPkErrK ylhes CBFB_RAT : 266- 291: vnakq YhRILKRRqARAKLEaEgkiPkErrK ylhes HAP2_YEAST : 168- 192: vnakq YyRILKRRyARAKLE-EklrIsRerK pylhe HAP2_YEAST : 169- 192: nakqy Y-RILKRRyARAKLE-EklrIsRerK pylhe PHP2_SCHPO : 17- 41: vnakq YhRILKRReARAKLE-ErlrGvQttK kpylh R 18: 63.1567 5( 5) R-I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K Occurences: 5(5) CBFB_HUMAN : 274- 297: akqyh RILKRRqARAKLEaEgkiPkErrK ylhes CBFB_MOUSE : 273- 296: akqyh RILKRRqARAKLEaEgkiPkErrK ylhes CBFB_RAT : 268- 291: akqyh RILKRRqARAKLEaEgkiPkErrK ylhes HAP2_YEAST : 170- 192: akqyy RILKRRyARAKLE-EklrIsRerK pylhe PHP2_SCHPO : 19- 41: akqyh RILKRReARAKLE-ErlrGvQttK kpylh S 19: 58.9866 5( 5) I-L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K Occurences: 5(5) CBFB_HUMAN : 275- 297: kqyhr ILKRRqARAKLEaEgkiPkErrK ylhes CBFB_MOUSE : 274- 296: kqyhr ILKRRqARAKLEaEgkiPkErrK ylhes CBFB_RAT : 269- 291: kqyhr ILKRRqARAKLEaEgkiPkErrK ylhes HAP2_YEAST : 171- 192: kqyyr ILKRRyARAKLE-EklrIsRerK pylhe PHP2_SCHPO : 20- 41: kqyhr ILKRReARAKLE-ErlrGvQttK kpylh T 20: 54.8166 5( 5) L-K-R-R-x-A-R-A-K-L-E-x(0,1)-E-x(3)-[GIP]-x-[EQR]-x(2)-K Occurences: 5(5) CBFB_HUMAN : 276- 297: qyhri LKRRqARAKLEaEgkiPkErrK ylhes CBFB_MOUSE : 275- 296: qyhri LKRRqARAKLEaEgkiPkErrK ylhes CBFB_RAT : 270- 291: qyhri LKRRqARAKLEaEgkiPkErrK ylhes HAP2_YEAST : 172- 192: qyyri LKRRyARAKLE-EklrIsRerK pylhe PHP2_SCHPO : 21- 41: qyhri LKRReARAKLE-ErlrGvQttK kpylh Number of patterns evaluated by Pratt:14466 Total running time: 3 seconds