------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file CBFA_NFYB PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CBFA_NFYB.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CBFA_CHICK 151 CBFA_HUMAN 207 CBFA_MAIZE 179 CBFA_MOUSE 207 CBFA_PETMA 209 CBFA_XENLA 122 HAP3_KLULA 205 HAP3_YEAST 144 PHP3_SCHPO 116 Pratt run started at Thu Feb 6 19:05:25 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 112.5914 9( 9) C-V-S-E-x-I-S-F-x-T-x-E-A-x(3)-C-x(3)-K-R-K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L 2: 112.5914 9( 9) Q-x-C-V-S-E-x-I-S-F-x-T-x-E-A-x(3)-C-x(3)-K-R-K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K 3: 108.4213 9( 9) S-E-x-I-S-F-x-T-x-E-A-x(3)-C-x(3)-K-R-K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K 4: 108.4213 9( 9) V-S-E-x-I-S-F-x-T-x-E-A-x(3)-C-x(3)-K-R-K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L 5: 104.2513 9( 9) I-S-F-x-T-x-E-A-x(3)-C-x(3)-K-R-K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R 6: 104.2513 9( 9) E-x-I-S-F-x-T-x-E-A-x(3)-C-x(3)-K-R-K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K 7: 100.0812 9( 9) S-F-x-T-x-E-A-x(3)-C-x(3)-K-R-K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R 8: 95.9112 9( 9) F-x-T-x-E-A-x(3)-C-x(3)-K-R-K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R 9: 91.7411 9( 9) T-x-E-A-x(3)-C-x(3)-K-R-K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R 10: 87.5711 9( 9) E-A-x(3)-C-x(3)-K-R-K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R 11: 83.4010 9( 9) A-x(3)-C-x(3)-K-R-K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R 12: 79.2310 9( 9) C-x(3)-K-R-K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R 13: 75.0609 9( 9) K-R-K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R 14: 70.8909 9( 9) R-K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R 15: 66.7208 9( 9) K-T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R 16: 62.5508 9( 9) T-I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R 17: 58.3807 9( 9) I-x-G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R 18: 54.2107 9( 9) G-x-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R 19: 53.2107 10( 9) T-x(2,4)-D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R 20: 50.0406 9( 9) D-x-L-x(5)-L-G-F-x(2)-Y-x-E-x-L-K-x(2)-L-x-K-x-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 165.1297 9( 9) Q-[DE]-C-V-S-E-[FL]-I-S-F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K B 2: 161.9591 9( 9) C-V-S-E-[FL]-I-S-F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L C 3: 160.4516 9( 9) S-E-[FL]-I-S-F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K D 4: 160.4516 9( 9) V-S-E-[FL]-I-S-F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT] E 5: 159.4660 9( 9) E-[FL]-I-S-F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY] F 6: 159.3800 9( 9) I-S-F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] G 7: 155.2099 9( 9) S-F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] H 8: 151.0399 9( 9) F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] I 9: 143.6450 9( 9) T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] J 10: 136.2944 9( 9) E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] K 11: 132.1244 9( 9) A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] L 12: 121.5232 9( 9) C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] M 13: 114.7026 9( 9) K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] N 14: 110.5325 9( 9) R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] O 15: 106.3625 9( 9) K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] P 16: 102.1924 9( 9) T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Q 17: 98.0224 9( 9) I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] R 18: 90.6580 9( 9) G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] S 19: 86.4874 10( 9) T-x(2,4)-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] T 20: 83.3173 9( 9) D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 165.1297 9( 9) Q-[DE]-C-V-S-E-[FL]-I-S-F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K Occurences: 9(9) CBFA_CHICK : 85- 133: akecv QECVSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLK lylqk CBFA_HUMAN : 87- 135: akecv QECVSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLK lylqk CBFA_MAIZE : 64- 112: aketv QECVSEFISFITSEASDkCqrEKRKTINGDDLLwAMaTLGFEDYIEPLK vylqk CBFA_MOUSE : 87- 135: akecv QECVSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLK lylqk CBFA_PETMA : 88- 136: akecv QECVSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLK qylqk CBFA_XENLA : 2- 50: v QECVSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLK lylqk HAP3_KLULA : 55- 103: akecm QECVSEFISFVTSEACDrCtsGKRKTINGEDILlSLhALGFENYAEVLK iylak HAP3_YEAST : 70- 118: akecm QECVSELISFVTSEASDrCaaDKRKTINGEDILiSLhALGFENYAEVLK iylak PHP3_SCHPO : 40- 88: akdcv QDCVSEFISFVTGEASEqCtqEKRKTITGEDVLlALnTLGFENYAEVLK isltk B 2: 161.9591 9( 9) C-V-S-E-[FL]-I-S-F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L Occurences: 9(9) CBFA_CHICK : 87- 136: ecvqe CVSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyL qkfre CBFA_HUMAN : 89- 138: ecvqe CVSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyL qkfre CBFA_MAIZE : 66- 115: etvqe CVSEFISFITSEASDkCqrEKRKTINGDDLLwAMaTLGFEDYIEPLKvyL qkyre CBFA_MOUSE : 89- 138: ecvqe CVSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyL qkfre CBFA_PETMA : 90- 139: ecvqe CVSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKqyL qkyre CBFA_XENLA : 4- 53: vqe CVSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyL qkfre HAP3_KLULA : 57- 106: ecmqe CVSEFISFVTSEACDrCtsGKRKTINGEDILlSLhALGFENYAEVLKiyL akyrq HAP3_YEAST : 72- 121: ecmqe CVSELISFVTSEASDrCaaDKRKTINGEDILiSLhALGFENYAEVLKiyL akyrq PHP3_SCHPO : 42- 91: dcvqd CVSEFISFVTGEASEqCtqEKRKTITGEDVLlALnTLGFENYAEVLKisL tkyre C 3: 160.4516 9( 9) S-E-[FL]-I-S-F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K Occurences: 9(9) CBFA_CHICK : 89- 138: vqecv SEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQK fream CBFA_HUMAN : 91- 140: vqecv SEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQK fream CBFA_MAIZE : 68- 117: vqecv SEFISFITSEASDkCqrEKRKTINGDDLLwAMaTLGFEDYIEPLKvyLQK yreme CBFA_MOUSE : 91- 140: vqecv SEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQK fream CBFA_PETMA : 92- 141: vqecv SEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKqyLQK yresm CBFA_XENLA : 6- 55: vqecv SEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQK fream HAP3_KLULA : 59- 108: mqecv SEFISFVTSEACDrCtsGKRKTINGEDILlSLhALGFENYAEVLKiyLAK yrqqq HAP3_YEAST : 74- 123: mqecv SELISFVTSEASDrCaaDKRKTINGEDILiSLhALGFENYAEVLKiyLAK yrqqq PHP3_SCHPO : 44- 93: vqdcv SEFISFVTGEASEqCtqEKRKTITGEDVLlALnTLGFENYAEVLKisLTK yreqq D 4: 160.4516 9( 9) V-S-E-[FL]-I-S-F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT] Occurences: 9(9) CBFA_CHICK : 88- 137: cvqec VSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQ kfrea CBFA_HUMAN : 90- 139: cvqec VSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQ kfrea CBFA_MAIZE : 67- 116: tvqec VSEFISFITSEASDkCqrEKRKTINGDDLLwAMaTLGFEDYIEPLKvyLQ kyrem CBFA_MOUSE : 90- 139: cvqec VSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQ kfrea CBFA_PETMA : 91- 140: cvqec VSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKqyLQ kyres CBFA_XENLA : 5- 54: vqec VSEFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQ kfrea HAP3_KLULA : 58- 107: cmqec VSEFISFVTSEACDrCtsGKRKTINGEDILlSLhALGFENYAEVLKiyLA kyrqq HAP3_YEAST : 73- 122: cmqec VSELISFVTSEASDrCaaDKRKTINGEDILiSLhALGFENYAEVLKiyLA kyrqq PHP3_SCHPO : 43- 92: cvqdc VSEFISFVTGEASEqCtqEKRKTITGEDVLlALnTLGFENYAEVLKisLT kyreq E 5: 159.4660 9( 9) E-[FL]-I-S-F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY] Occurences: 9(9) CBFA_CHICK : 90- 139: qecvs EFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKF reamk CBFA_HUMAN : 92- 141: qecvs EFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKF reamk CBFA_MAIZE : 69- 118: qecvs EFISFITSEASDkCqrEKRKTINGDDLLwAMaTLGFEDYIEPLKvyLQKY remeg CBFA_MOUSE : 92- 141: qecvs EFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKF reamk CBFA_PETMA : 93- 142: qecvs EFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKqyLQKY resmk CBFA_XENLA : 7- 56: qecvs EFISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKF reamk HAP3_KLULA : 60- 109: qecvs EFISFVTSEACDrCtsGKRKTINGEDILlSLhALGFENYAEVLKiyLAKY rqqqa HAP3_YEAST : 75- 124: qecvs ELISFVTSEASDrCaaDKRKTINGEDILiSLhALGFENYAEVLKiyLAKY rqqqa PHP3_SCHPO : 45- 94: qdcvs EFISFVTGEASEqCtqEKRKTITGEDVLlALnTLGFENYAEVLKisLTKY reqqa F 6: 159.3800 9( 9) I-S-F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 9(9) CBFA_CHICK : 92- 141: cvsef ISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 94- 143: cvsef ISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 71- 120: cvsef ISFITSEASDkCqrEKRKTINGDDLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 94- 143: cvsef ISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 95- 144: cvsef ISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 9- 58: cvsef ISFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 62- 111: cvsef ISFVTSEACDrCtsGKRKTINGEDILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 77- 126: cvsel ISFVTSEASDrCaaDKRKTINGEDILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 47- 96: cvsef ISFVTGEASEqCtqEKRKTITGEDVLlALnTLGFENYAEVLKisLTKYRE qqars G 7: 155.2099 9( 9) S-F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 9(9) CBFA_CHICK : 93- 141: vsefi SFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 95- 143: vsefi SFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 72- 120: vsefi SFITSEASDkCqrEKRKTINGDDLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 95- 143: vsefi SFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 96- 144: vsefi SFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 10- 58: vsefi SFITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 63- 111: vsefi SFVTSEACDrCtsGKRKTINGEDILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 78- 126: vseli SFVTSEASDrCaaDKRKTINGEDILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 48- 96: vsefi SFVTGEASEqCtqEKRKTITGEDVLlALnTLGFENYAEVLKisLTKYRE qqars H 8: 151.0399 9( 9) F-[IV]-T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 9(9) CBFA_CHICK : 94- 141: sefis FITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 96- 143: sefis FITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 73- 120: sefis FITSEASDkCqrEKRKTINGDDLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 96- 143: sefis FITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 97- 144: sefis FITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 11- 58: sefis FITSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 64- 111: sefis FVTSEACDrCtsGKRKTINGEDILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 79- 126: selis FVTSEASDrCaaDKRKTINGEDILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 49- 96: sefis FVTGEASEqCtqEKRKTITGEDVLlALnTLGFENYAEVLKisLTKYRE qqars I 9: 143.6450 9( 9) T-[GS]-E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 9(9) CBFA_CHICK : 96- 141: fisfi TSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 98- 143: fisfi TSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 75- 120: fisfi TSEASDkCqrEKRKTINGDDLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 98- 143: fisfi TSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 99- 144: fisfi TSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 13- 58: fisfi TSEASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 66- 111: fisfv TSEACDrCtsGKRKTINGEDILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 81- 126: lisfv TSEASDrCaaDKRKTINGEDILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 51- 96: fisfv TGEASEqCtqEKRKTITGEDVLlALnTLGFENYAEVLKisLTKYRE qqars J 10: 136.2944 9( 9) E-A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 9(9) CBFA_CHICK : 98- 141: sfits EASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 100- 143: sfits EASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 77- 120: sfits EASDkCqrEKRKTINGDDLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 100- 143: sfits EASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 101- 144: sfits EASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 15- 58: sfits EASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 68- 111: sfvts EACDrCtsGKRKTINGEDILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 83- 126: sfvts EASDrCaaDKRKTINGEDILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 53- 96: sfvtg EASEqCtqEKRKTITGEDVLlALnTLGFENYAEVLKisLTKYRE qqars K 11: 132.1244 9( 9) A-[CS]-[DE]-x-C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 9(9) CBFA_CHICK : 99- 141: fitse ASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 101- 143: fitse ASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 78- 120: fitse ASDkCqrEKRKTINGDDLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 101- 143: fitse ASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 102- 144: fitse ASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 16- 58: fitse ASErChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 69- 111: fvtse ACDrCtsGKRKTINGEDILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 84- 126: fvtse ASDrCaaDKRKTINGEDILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 54- 96: fvtge ASEqCtqEKRKTITGEDVLlALnTLGFENYAEVLKisLTKYRE qqars L 12: 121.5232 9( 9) C-x(2)-[DEG]-K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 9(9) CBFA_CHICK : 103- 141: easer ChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 105- 143: easer ChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 82- 120: easdk CqrEKRKTINGDDLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 105- 143: easer ChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 106- 144: easer ChqEKRKTINGEDILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 20- 58: easer ChqEKRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 73- 111: eacdr CtsGKRKTINGEDILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 88- 126: easdr CaaDKRKTINGEDILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 58- 96: easeq CtqEKRKTITGEDVLlALnTLGFENYAEVLKisLTKYRE qqars M 13: 114.7026 9( 9) K-R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 9(9) CBFA_CHICK : 107- 141: rchqe KRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 109- 143: rchqe KRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 86- 120: kcqre KRKTINGDDLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 109- 143: rchqe KRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 110- 144: rchqe KRKTINGEDILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 24- 58: rchqe KRKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 77- 111: rctsg KRKTINGEDILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 92- 126: rcaad KRKTINGEDILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 62- 96: qctqe KRKTITGEDVLlALnTLGFENYAEVLKisLTKYRE qqars N 14: 110.5325 9( 9) R-K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 9(9) CBFA_CHICK : 108- 141: chqek RKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 110- 143: chqek RKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 87- 120: cqrek RKTINGDDLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 110- 143: chqek RKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 111- 144: chqek RKTINGEDILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 25- 58: chqek RKTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 78- 111: ctsgk RKTINGEDILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 93- 126: caadk RKTINGEDILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 63- 96: ctqek RKTITGEDVLlALnTLGFENYAEVLKisLTKYRE qqars O 15: 106.3625 9( 9) K-T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 9(9) CBFA_CHICK : 109- 141: hqekr KTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 111- 143: hqekr KTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 88- 120: qrekr KTINGDDLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 111- 143: hqekr KTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 112- 144: hqekr KTINGEDILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 26- 58: hqekr KTINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 79- 111: tsgkr KTINGEDILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 94- 126: aadkr KTINGEDILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 64- 96: tqekr KTITGEDVLlALnTLGFENYAEVLKisLTKYRE qqars P 16: 102.1924 9( 9) T-I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 9(9) CBFA_CHICK : 110- 141: qekrk TINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 112- 143: qekrk TINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 89- 120: rekrk TINGDDLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 112- 143: qekrk TINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 113- 144: qekrk TINGEDILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 27- 58: qekrk TINGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 80- 111: sgkrk TINGEDILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 95- 126: adkrk TINGEDILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 65- 96: qekrk TITGEDVLlALnTLGFENYAEVLKisLTKYRE qqars Q 17: 98.0224 9( 9) I-[NT]-G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 9(9) CBFA_CHICK : 111- 141: ekrkt INGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 113- 143: ekrkt INGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 90- 120: ekrkt INGDDLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 113- 143: ekrkt INGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 114- 144: ekrkt INGEDILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 28- 58: ekrkt INGEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 81- 111: gkrkt INGEDILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 96- 126: dkrkt INGEDILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 66- 96: ekrkt ITGEDVLlALnTLGFENYAEVLKisLTKYRE qqars R 18: 90.6580 9( 9) G-[DE]-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 9(9) CBFA_CHICK : 113- 141: rktin GEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 115- 143: rktin GEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 92- 120: rktin GDDLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 115- 143: rktin GEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 116- 144: rktin GEDILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 30- 58: rktin GEDILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 83- 111: rktin GEDILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 98- 126: rktin GEDILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 68- 96: rktit GEDVLlALnTLGFENYAEVLKisLTKYRE qqars S 19: 86.4874 10( 9) T-x(2,4)-D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 10(9) CBFA_CHICK : 110- 141: qekrk TingeDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 112- 143: qekrk TingeDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 89- 120: rekrk TingdDLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 112- 143: qekrk TingeDILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 113- 144: qekrk TingeDILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 27- 58: qekrk TingeDILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 80- 111: sgkrk TingeDILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 95- 126: adkrk TingeDILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 65- 96: qekrk TitgeDVLlALnTLGFENYAEVLKisLTKYRE qqars PHP3_SCHPO : 67- 96: krkti Tge--DVLlALnTLGFENYAEVLKisLTKYRE qqars T 20: 83.3173 9( 9) D-[ILV]-L-x-[AS]-[LM]-x-[AT]-L-G-F-[DE]-[DNS]-Y-[AIV]-E-[PV]-L-K-x(2)-L-[AQT]-K-[FY]-R-[EQ] Occurences: 9(9) CBFA_CHICK : 115- 141: tinge DILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_HUMAN : 117- 143: tinge DILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_MAIZE : 94- 120: tingd DLLwAMaTLGFEDYIEPLKvyLQKYRE megds CBFA_MOUSE : 117- 143: tinge DILfAMsTLGFDSYVEPLKlyLQKFRE amkge CBFA_PETMA : 118- 144: tinge DILfAMsTLGFDSYVEPLKqyLQKYRE smkge CBFA_XENLA : 32- 58: tinge DILfAMsTLGFDSYVEPLKlyLQKFRE amkge HAP3_KLULA : 85- 111: tinge DILlSLhALGFENYAEVLKiyLAKYRQ qqaik HAP3_YEAST : 100- 126: tinge DILiSLhALGFENYAEVLKiyLAKYRQ qqalk PHP3_SCHPO : 70- 96: titge DVLlALnTLGFENYAEVLKisLTKYRE qqars Number of patterns evaluated by Pratt:6504 Total running time: 1 seconds