------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file CBD_FUNGAL PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CBD_FUNGAL.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GUN1_TRIRE 459 GUN2_TRIRE 418 GUN5_TRIRE 242 GUNB_FUSOX 462 GUNF_FUSOX 385 GUNK_FUSOX 376 GUX1_HUMGR 525 GUX1_PENJA 537 GUX1_PHACH 516 GUX1_TRIRE 513 GUX1_TRIVI 513 GUX2_TRIRE 471 GUXC_FUSOX 514 Pratt run started at Thu Feb 6 19:05:19 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 25.0203 13( 13) C-x(5)-C-x(3)-N-x(2)-Y-x-Q-C 2: 20.8503 13( 13) C-x(3)-N-x(2)-Y-x-Q-C 3: 16.6802 13( 13) N-x(2)-Y-x-Q-C 4: 16.6802 13( 13) Q-C-G-G 5: 15.1802 16( 13) Y-x(1,3)-Q-C-x(0,1)-P 6: 15.1802 15( 13) C-x(1,3)-N-x(4)-Q-x(0,1)-C 7: 12.5102 17( 13) Y-x-Q-C 8: 12.5102 18( 13) C-G-G 9: 12.5102 21( 13) G-G-x(4)-G 10: 12.0102 14( 13) Q-C-x(0,1)-P 11: 12.0102 16( 13) G-x(3)-C-x(2,3)-G 12: 12.0102 28( 13) G-x-G-x(1,2)-G 13: 12.0102 14( 13) G-x(4)-G-x(3,4)-C 14: 12.0102 23( 13) G-x(0,1)-G-x-G 15: 12.0102 34( 13) T-x(2,3)-T-x(3)-S 16: 12.0102 17( 13) G-x(3)-C-x(1,2)-G 17: 12.0102 25( 13) T-x(2,3)-G-x-S 18: 12.0102 21( 13) G-x(4)-G-x(1,2)-S 19: 12.0102 15( 13) N-x(4)-Q-x(0,1)-C 20: 12.0102 21( 13) C-G-x(0,1)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 33.1765 13( 13) C-x(2)-[GP]-x(2)-C-x(3)-N-[DEPQ]-[FWY]-Y-x-Q-C B 2: 25.7823 13( 13) C-x(3)-N-[DEPQ]-[FWY]-Y-x-Q-C C 3: 22.6040 13( 13) C-x(1,3)-N-x-[FWY]-Y-x-Q-C D 4: 21.6122 13( 13) N-[DEPQ]-[FWY]-Y-x-Q-C E 5: 19.4339 13( 13) N-x-[FWY]-Y-x-Q-C F 6: 18.5478 16( 13) C-G-G-x(3)-[ADGNST]-x(3)-[ACGNTV]-[CGN] G 7: 16.6802 13( 13) Q-C-G-G H 8: 16.2042 16( 13) C-G-x(0,1)-G-x(3)-[ACGST]-x(4)-[CGNV] I 9: 15.2639 13( 13) G-G-x(2)-[FWY]-x-G J 10: 15.1802 16( 13) Y-x(1,3)-Q-C-x(0,1)-P K 11: 14.6802 14( 13) G-x-[EGN]-x(2)-G-x(3,4)-C L 12: 14.2633 23( 13) G-x-G-x(1,2)-G-x(3)-[ACGS] M 13: 13.9382 13( 13) G-x(2)-[ACNTV]-C-x(2,3)-G N 14: 12.5102 17( 13) Y-x-Q-C O 15: 12.0102 14( 13) Q-C-x(0,1)-P P 16: 12.0102 23( 13) G-x(0,1)-G-x-G Q 17: 12.0102 34( 13) T-x(2,3)-T-x(3)-S R 18: 12.0102 17( 13) G-x(3)-C-x(1,2)-G S 19: 12.0102 25( 13) T-x(2,3)-G-x-S T 20: 12.0102 21( 13) G-x(4)-G-x(1,2)-S Best patterns with alignements: fitness hits(seqs) Pattern A 1: 33.1765 13( 13) C-x(2)-[GP]-x(2)-C-x(3)-N-[DEPQ]-[FWY]-Y-x-Q-C Occurences: 13(13) GUN1_TRIRE : 442- 458: sgckt CtsGttCqysNDYYsQC l GUN2_TRIRE : 40- 56: sgptn CapGsaCstlNPYYaQC ipgat GUN5_TRIRE : 224- 240: tgptt CqaPgtCkvqNQWYsQC lp GUNB_FUSOX : 44- 60: sgtpc CtsGnkCvklNDFYsQC qpgsa GUNF_FUSOX : 36- 52: tgatt CasGlkCekiNDWYyQC vpgsg GUNK_FUSOX : 357- 373: ngnla CatGskCvkqNEYYsQC vpn GUX1_HUMGR : 508- 524: tgptq CeePyiCtklNDWYsQC l GUX1_PENJA : 520- 536: tgptt CvsPytCtkqNDWYsQC l GUX1_PHACH : 499- 515: tgstt CasPytChvlNPYYsQC y GUX1_TRIRE : 496- 512: sgptv CasGttCqvlNPYYsQC l GUX1_TRIVI : 496- 512: igptv CasGstCqvlNPYYsQC l GUX2_TRIRE : 45- 61: sgptc CasGstCvysNDYYsQC lpgaa GUXC_FUSOX : 497- 513: sgptt CksPftCkkiNDFYsQC q B 2: 25.7823 13( 13) C-x(3)-N-[DEPQ]-[FWY]-Y-x-Q-C Occurences: 13(13) GUN1_TRIRE : 448- 458: tsgtt CqysNDYYsQC l GUN2_TRIRE : 46- 56: apgsa CstlNPYYaQC ipgat GUN5_TRIRE : 230- 240: qapgt CkvqNQWYsQC lp GUNB_FUSOX : 50- 60: tsgnk CvklNDFYsQC qpgsa GUNF_FUSOX : 42- 52: asglk CekiNDWYyQC vpgsg GUNK_FUSOX : 363- 373: atgsk CvkqNEYYsQC vpn GUX1_HUMGR : 514- 524: eepyi CtklNDWYsQC l GUX1_PENJA : 526- 536: vspyt CtkqNDWYsQC l GUX1_PHACH : 505- 515: aspyt ChvlNPYYsQC y GUX1_TRIRE : 502- 512: asgtt CqvlNPYYsQC l GUX1_TRIVI : 502- 512: asgst CqvlNPYYsQC l GUX2_TRIRE : 51- 61: asgst CvysNDYYsQC lpgaa GUXC_FUSOX : 503- 513: kspft CkkiNDFYsQC q C 3: 22.6040 13( 13) C-x(1,3)-N-x-[FWY]-Y-x-Q-C Occurences: 13(13) GUN1_TRIRE : 448- 458: tsgtt CqysNdYYsQC l GUN2_TRIRE : 46- 56: apgsa CstlNpYYaQC ipgat GUN5_TRIRE : 230- 240: qapgt CkvqNqWYsQC lp GUNB_FUSOX : 50- 60: tsgnk CvklNdFYsQC qpgsa GUNF_FUSOX : 42- 52: asglk CekiNdWYyQC vpgsg GUNK_FUSOX : 363- 373: atgsk CvkqNeYYsQC vpn GUX1_HUMGR : 514- 524: eepyi CtklNdWYsQC l GUX1_PENJA : 526- 536: vspyt CtkqNdWYsQC l GUX1_PHACH : 505- 515: aspyt ChvlNpYYsQC y GUX1_TRIRE : 502- 512: asgtt CqvlNpYYsQC l GUX1_TRIVI : 502- 512: asgst CqvlNpYYsQC l GUX2_TRIRE : 51- 61: asgst CvysNdYYsQC lpgaa GUXC_FUSOX : 503- 513: kspft CkkiNdFYsQC q D 4: 21.6122 13( 13) N-[DEPQ]-[FWY]-Y-x-Q-C Occurences: 13(13) GUN1_TRIRE : 452- 458: tcqys NDYYsQC l GUN2_TRIRE : 50- 56: acstl NPYYaQC ipgat GUN5_TRIRE : 234- 240: tckvq NQWYsQC lp GUNB_FUSOX : 54- 60: kcvkl NDFYsQC qpgsa GUNF_FUSOX : 46- 52: kceki NDWYyQC vpgsg GUNK_FUSOX : 367- 373: kcvkq NEYYsQC vpn GUX1_HUMGR : 518- 524: ictkl NDWYsQC l GUX1_PENJA : 530- 536: tctkq NDWYsQC l GUX1_PHACH : 509- 515: tchvl NPYYsQC y GUX1_TRIRE : 506- 512: tcqvl NPYYsQC l GUX1_TRIVI : 506- 512: tcqvl NPYYsQC l GUX2_TRIRE : 55- 61: tcvys NDYYsQC lpgaa GUXC_FUSOX : 507- 513: tckki NDFYsQC q E 5: 19.4339 13( 13) N-x-[FWY]-Y-x-Q-C Occurences: 13(13) GUN1_TRIRE : 452- 458: tcqys NdYYsQC l GUN2_TRIRE : 50- 56: acstl NpYYaQC ipgat GUN5_TRIRE : 234- 240: tckvq NqWYsQC lp GUNB_FUSOX : 54- 60: kcvkl NdFYsQC qpgsa GUNF_FUSOX : 46- 52: kceki NdWYyQC vpgsg GUNK_FUSOX : 367- 373: kcvkq NeYYsQC vpn GUX1_HUMGR : 518- 524: ictkl NdWYsQC l GUX1_PENJA : 530- 536: tctkq NdWYsQC l GUX1_PHACH : 509- 515: tchvl NpYYsQC y GUX1_TRIRE : 506- 512: tcqvl NpYYsQC l GUX1_TRIVI : 506- 512: tcqvl NpYYsQC l GUX2_TRIRE : 55- 61: tcvys NdYYsQC lpgaa GUXC_FUSOX : 507- 513: tckki NdFYsQC q F 6: 18.5478 16( 13) C-G-G-x(3)-[ADGNST]-x(3)-[ACGNTV]-[CGN] Occurences: 16(13) GUN1_TRIRE : 431- 442: thwgq CGGigySgckTC tsgtt GUN2_TRIRE : 29- 40: tvwgq CGGigwSgptNC apgsa GUN5_TRIRE : 213- 224: tlygq CGGagwTgptTC qapgt GUNB_FUSOX : 33- 44: gvwaq CGGqnwSgtpCC tsgnk GUNF_FUSOX : 25- 36: piwgq CGGngwTgatTC asglk GUNK_FUSOX : 343- 354: payyq CGGsksAypnGN lacat GUX1_HUMGR : 262- 273: cegds CGGtysNeryAG vcdpd GUX1_PENJA : 266- 277: ctgqr CGGtysTdryGG tcdpd GUX1_PENJA : 509- 520: rdwaq CGGngwTgptTC vspyt GUX1_PHACH : 488- 499: pqwgq CGGigyTgstTC aspyt GUX1_TRIRE : 260- 271: cegdg CGGtysDnryGG tcdpd GUX1_TRIRE : 485- 496: shygq CGGigySgptVC asgtt GUX1_TRIVI : 260- 271: cegds CGGtysGdryGG tcdpd GUX2_TRIRE : 34- 45: svwgq CGGqnwSgptCC asgst GUXC_FUSOX : 260- 271: ctgds CGGtysSdryGG tcdad GUXC_FUSOX : 486- 497: dqwgq CGGqnySgptTC kspft G 7: 16.6802 13( 13) Q-C-G-G Occurences: 13(13) GUN1_TRIRE : 430- 433: qthwg QCGG igysg GUN2_TRIRE : 28- 31: qtvwg QCGG igwsg GUN5_TRIRE : 212- 215: qtlyg QCGG agwtg GUNB_FUSOX : 32- 35: ngvwa QCGG qnwsg GUNF_FUSOX : 24- 27: apiwg QCGG ngwtg GUNK_FUSOX : 342- 345: vpayy QCGG sksay GUX1_HUMGR : 496- 499: agrwq QCGG igftg GUX1_PENJA : 508- 511: ardwa QCGG ngwtg GUX1_PHACH : 487- 490: vpqwg QCGG igytg GUX1_TRIRE : 484- 487: qshyg QCGG igysg GUX1_TRIVI : 484- 487: qthyg QCGG igyig GUX2_TRIRE : 33- 36: ssvwg QCGG qnwsg GUXC_FUSOX : 485- 488: vdqwg QCGG qnysg H 8: 16.2042 16( 13) C-G-x(0,1)-G-x(3)-[ACGST]-x(4)-[CGNV] Occurences: 16(13) GUN1_TRIRE : 431- 442: thwgq CG-GigySgcktC tsgtt GUN2_TRIRE : 29- 40: tvwgq CG-GigwSgptnC apgsa GUN5_TRIRE : 91- 103: apcss CGtGgaaGqsiiV mvtnl GUN5_TRIRE : 213- 224: tlygq CG-GagwTgpttC qapgt GUNB_FUSOX : 33- 44: gvwaq CG-GqnwSgtpcC tsgnk GUNF_FUSOX : 25- 36: piwgq CG-GngwTgattC asglk GUNK_FUSOX : 343- 354: payyq CG-GsksAypngN lacat GUX1_HUMGR : 497- 508: grwqq CG-GigfTgptqC eepyi GUX1_PENJA : 266- 277: ctgqr CG-GtysTdrygG tcdpd GUX1_PENJA : 509- 520: rdwaq CG-GngwTgpttC vspyt GUX1_PHACH : 488- 499: pqwgq CG-GigyTgsttC aspyt GUX1_TRIRE : 485- 496: shygq CG-GigySgptvC asgtt GUX1_TRIVI : 260- 271: cegds CG-GtysGdrygG tcdpd GUX2_TRIRE : 34- 45: svwgq CG-GqnwSgptcC asgst GUXC_FUSOX : 260- 271: ctgds CG-GtysSdrygG tcdad GUXC_FUSOX : 486- 497: dqwgq CG-GqnySgpttC kspft I 9: 15.2639 13( 13) G-G-x(2)-[FWY]-x-G Occurences: 13(13) GUN1_TRIRE : 432- 438: hwgqc GGigYsG cktct GUN2_TRIRE : 30- 36: vwgqc GGigWsG ptnca GUN5_TRIRE : 214- 220: lygqc GGagWtG pttcq GUNB_FUSOX : 34- 40: vwaqc GGqnWsG tpcct GUNF_FUSOX : 26- 32: iwgqc GGngWtG attca GUNK_FUSOX : 163- 169: fgkal GGaqYgG issrs GUX1_HUMGR : 498- 504: rwqqc GGigFtG ptqce GUX1_PENJA : 510- 516: dwaqc GGngWtG pttcv GUX1_PHACH : 489- 495: qwgqc GGigYtG sttca GUX1_TRIRE : 486- 492: hygqc GGigYsG ptvca GUX1_TRIVI : 486- 492: hygqc GGigYiG ptvca GUX2_TRIRE : 35- 41: vwgqc GGqnWsG ptcca GUXC_FUSOX : 487- 493: qwgqc GGqnYsG pttck J 10: 15.1802 16( 13) Y-x(1,3)-Q-C-x(0,1)-P Occurences: 16(13) GUN1_TRIRE : 192- 198: nygsg YcdaQC-P vqtwr GUN2_TRIRE : 52- 58: stlnp Yya-QCiP gatti GUN2_TRIRE : 53- 58: tlnpy Ya--QCiP gatti GUN5_TRIRE : 237- 242: vqnqw Ys--QClP GUNB_FUSOX : 57- 62: klndf Ys--QCqP gsaep GUNF_FUSOX : 49- 54: kindw Yy--QCvP gsggs GUNK_FUSOX : 369- 375: vkqne Yys-QCvP n GUNK_FUSOX : 370- 375: kqney Ys--QCvP n GUX1_HUMGR : 190- 196: kygtg YcdaQC-P rdikf GUX1_PENJA : 194- 200: kygtg YcdsQC-P rdlkf GUX1_PHACH : 186- 192: kygtg YcdsQC-P rdikf GUX1_TRIRE : 188- 194: kygtg YcdsQC-P rdlkf GUX1_TRIVI : 188- 194: kygtg YcdsQC-P rdlkf GUX2_TRIRE : 57- 63: vysnd Yys-QClP gaass GUX2_TRIRE : 58- 63: ysndy Ys--QClP gaass GUXC_FUSOX : 188- 194: kygtg YcdaQC-P rdvkf K 11: 14.6802 14( 13) G-x-[EGN]-x(2)-G-x(3,4)-C Occurences: 14(13) GUN1_TRIRE : 433- 442: wgqcg GiGysGckt-C tsgtt GUN2_TRIRE : 31- 40: wgqcg GiGwsGptn-C apgsa GUN2_TRIRE : 97- 107: gvrfa GvNiaGfdfgC ttdgt GUN5_TRIRE : 215- 224: ygqcg GaGwtGptt-C qapgt GUNB_FUSOX : 35- 44: waqcg GqNwsGtpc-C tsgnk GUNF_FUSOX : 27- 36: wgqcg GnGwtGatt-C asglk GUNK_FUSOX : 65- 75: tnavn GcEggGsayaC tnysp GUX1_HUMGR : 499- 508: wqqcg GiGftGptq-C eepyi GUX1_PENJA : 511- 520: waqcg GnGwtGptt-C vspyt GUX1_PHACH : 490- 499: wgqcg GiGytGstt-C aspyt GUX1_TRIRE : 487- 496: ygqcg GiGysGptv-C asgtt GUX1_TRIVI : 487- 496: ygqcg GiGyiGptv-C asgst GUX2_TRIRE : 36- 45: wgqcg GqNwsGptc-C asgst GUXC_FUSOX : 488- 497: wgqcg GqNysGptt-C kspft L 12: 14.2633 23( 13) G-x-G-x(1,2)-G-x(3)-[ACGS] Occurences: 23(13) GUN1_TRIRE : 433- 442: wgqcg GiGysGcktC tsgtt GUN2_TRIRE : 31- 40: wgqcg GiGwsGptnC apgsa GUN2_TRIRE : 382- 390: ylgyv GwGa-GsfdS tyvlt GUN5_TRIRE : 47- 55: fpwql GiGn-GvytA agsqa GUN5_TRIRE : 215- 224: ygqcg GaGwtGpttC qapgt GUNB_FUSOX : 387- 395: wcnak GtGf-GlrpS tntgd GUNF_FUSOX : 27- 36: wgqcg GnGwtGattC asglk GUNF_FUSOX : 283- 292: gipid GiGsqGhlaA psgwn GUNK_FUSOX : 145- 153: dlmmp GgGv-GifdG ctsef GUX1_HUMGR : 221- 230: ndpna GaGryGtccS emdiw GUX1_HUMGR : 457- 465: vaglp GaGn-GgnnG gnppp GUX1_HUMGR : 457- 466: vaglp GaGngGnngG npppp GUX1_HUMGR : 499- 508: wqqcg GiGftGptqC eepyi GUX1_PENJA : 225- 234: ndvns GiGnhGsccA emdiw GUX1_PENJA : 381- 389: hggma GmGa-GladG mvlvm GUX1_PENJA : 511- 520: waqcg GnGwtGpttC vspyt GUX1_PHACH : 490- 499: wgqcg GiGytGsttC aspyt GUX1_TRIRE : 219- 228: nnant GiGghGsccS emdiw GUX1_TRIRE : 257- 265: qeice GdGc-GgtyS dnryg GUX1_TRIRE : 487- 496: ygqcg GiGysGptvC asgtt GUX1_TRIVI : 219- 228: nnant GiGghGsccS emdiw GUX1_TRIVI : 487- 496: ygqcg GiGyiGptvC asgst GUX2_TRIRE : 396- 404: wcnvi GtGf-GirpS antgd GUXC_FUSOX : 152- 160: dvdvs GiGc-GlngA phfvs M 13: 13.9382 13( 13) G-x(2)-[ACNTV]-C-x(2,3)-G Occurences: 13(13) GUN1_TRIRE : 438- 445: gigys GckTCts-G ttcqy GUN2_TRIRE : 36- 43: gigws GptNCap-G sacst GUN5_TRIRE : 220- 228: gagwt GptTCqapG tckvq GUNB_FUSOX : 40- 47: gqnws GtpCCts-G nkcvk GUNF_FUSOX : 32- 39: gngwt GatTCas-G lkcek GUNK_FUSOX : 353- 360: saypn GnlACat-G skcvk GUX1_HUMGR : 64- 71: thqvs GstNCyt-G nkwdt GUX1_PENJA : 70- 77: vhsts GstNCyt-G ntwda GUX1_PHACH : 64- 71: lhsts GytNCyt-G nqwda GUX1_TRIRE : 492- 499: gigys GptVCas-G ttcqv GUX1_TRIVI : 492- 499: gigyi GptVCas-G stcqv GUX2_TRIRE : 41- 48: gqnws GptCCas-G stcvy GUXC_FUSOX : 62- 69: thqts GstNCyt-G nkwdt N 14: 12.5102 17( 13) Y-x-Q-C Occurences: 17(13) GUN1_TRIRE : 455- 458: ysndy YsQC l GUN2_TRIRE : 53- 56: tlnpy YaQC ipgat GUN5_TRIRE : 210- 213: gqqtl YgQC ggagw GUN5_TRIRE : 237- 240: vqnqw YsQC lp GUNB_FUSOX : 57- 60: klndf YsQC qpgsa GUNF_FUSOX : 49- 52: kindw YyQC vpgsg GUNK_FUSOX : 340- 343: svvpa YyQC ggsks GUNK_FUSOX : 370- 373: kqney YsQC vpn GUX1_HUMGR : 521- 524: klndw YsQC l GUX1_PENJA : 533- 536: kqndw YsQC l GUX1_PHACH : 512- 515: vlnpy YsQC y GUX1_TRIRE : 482- 485: ptqsh YgQC ggigy GUX1_TRIRE : 509- 512: vlnpy YsQC l GUX1_TRIVI : 482- 485: ptqth YgQC ggigy GUX1_TRIVI : 509- 512: vlnpy YsQC l GUX2_TRIRE : 58- 61: ysndy YsQC lpgaa GUXC_FUSOX : 510- 513: kindf YsQC q O 15: 12.0102 14( 13) Q-C-x(0,1)-P Occurences: 14(13) GUN1_TRIRE : 196- 198: gycda QC-P vqtwr GUN2_TRIRE : 55- 58: npyya QCiP gatti GUN5_TRIRE : 239- 242: nqwys QClP GUNB_FUSOX : 59- 62: ndfys QCqP gsaep GUNF_FUSOX : 51- 54: ndwyy QCvP gsggs GUNK_FUSOX : 208- 210: tfeqv QC-P kalld GUNK_FUSOX : 372- 375: neyys QCvP n GUX1_HUMGR : 194- 196: gycda QC-P rdikf GUX1_PENJA : 198- 200: gycds QC-P rdlkf GUX1_PHACH : 190- 192: gycds QC-P rdikf GUX1_TRIRE : 192- 194: gycds QC-P rdlkf GUX1_TRIVI : 192- 194: gycds QC-P rdlkf GUX2_TRIRE : 60- 63: ndyys QClP gaass GUXC_FUSOX : 192- 194: gycda QC-P rdvkf P 16: 12.0102 23( 13) G-x(0,1)-G-x-G Occurences: 23(13) GUN1_TRIRE : 432- 435: hwgqc G-GiG ysgck GUN2_TRIRE : 30- 33: vwgqc G-GiG wsgpt GUN2_TRIRE : 382- 386: ylgyv GwGaG sfdst GUN5_TRIRE : 47- 51: fpwql GiGnG vytaa GUN5_TRIRE : 71- 75: gaswc GaGcG kcyql GUN5_TRIRE : 214- 217: lygqc G-GaG wtgpt GUNB_FUSOX : 387- 391: wcnak GtGfG lrpst GUNF_FUSOX : 26- 29: iwgqc G-GnG wtgat GUNF_FUSOX : 80- 83: tggns G-GtG ldakf GUNK_FUSOX : 145- 149: dlmmp GgGvG ifdgc GUNK_FUSOX : 146- 149: lmmpg G-GvG ifdgc GUX1_HUMGR : 457- 461: vaglp GaGnG gnngg GUX1_HUMGR : 498- 501: rwqqc G-GiG ftgpt GUX1_PENJA : 381- 385: hggma GmGaG ladgm GUX1_PENJA : 510- 513: dwaqc G-GnG wtgpt GUX1_PHACH : 489- 492: qwgqc G-GiG ytgst GUX1_TRIRE : 221- 224: antgi G-GhG sccse GUX1_TRIRE : 257- 261: qeice GdGcG gtysd GUX1_TRIRE : 486- 489: hygqc G-GiG ysgpt GUX1_TRIVI : 221- 224: antgi G-GhG sccse GUX1_TRIVI : 486- 489: hygqc G-GiG yigpt GUX2_TRIRE : 396- 400: wcnvi GtGfG irpsa GUXC_FUSOX : 152- 156: dvdvs GiGcG lngap Q 17: 12.0102 34( 13) T-x(2,3)-T-x(3)-S Occurences: 34(13) GUN1_TRIRE : 275- 283: tftii TqfnTdngS psgnl GUN1_TRIRE : 406- 414: ppass TtfsTtrrS sttss GUN1_TRIRE : 407- 414: passt Tfs-TtrrS sttss GUN1_TRIRE : 407- 415: passt TfstTrrsS ttsss GUN1_TRIRE : 443- 451: gcktc TsgtTcqyS ndyys GUN2_TRIRE : 64- 71: gatti Tts-TrppS gpttt GUN2_TRIRE : 74- 81: ppsgp Ttt-TratS tssst GUN2_TRIRE : 76- 84: sgptt TtraTstsS stppt GUN2_TRIRE : 77- 84: gpttt Tra-TstsS stppt GUN2_TRIRE : 82- 90: trats TsssTpptS sgvrf GUN2_TRIRE : 108- 116: fdfgc TtdgTcvtS kvypp GUN2_TRIRE : 109- 116: dfgct Tdg-TcvtS kvypp GUN5_TRIRE : 184- 191: vlgnd Tgs-TppgS sppat GUNB_FUSOX : 82- 89: ttatk Tta-TggsS ttagg GUNF_FUSOX : 31- 38: ggngw Tga-TtcaS glkce GUNF_FUSOX : 71- 79: tqggg TpqpTggnS ggtgl GUNK_FUSOX : 328- 335: scpak Tda-TakaS vvpay GUX1_HUMGR : 76- 84: gnkwd TsicTdakS caqnc GUX1_PENJA : 410- 417: lwlds Typ-TnatS ttpga GUX1_PENJA : 460- 467: lnstf Tgg-TtssS stttt GUX1_PENJA : 460- 468: lnstf TggtTsssS ttttt GUX1_PENJA : 469- 476: tssss Ttt-TtskS tstss GUX1_PENJA : 473- 481: stttt TsksTstsS ssktt GUX1_PENJA : 487- 495: ssktt TtvtTtttS sgssg GUX1_PENJA : 488- 495: skttt Tvt-TtttS sgssg GUX1_PENJA : 488- 496: skttt TvttTttsS gssgt GUX1_PENJA : 490- 498: ttttv TtttTssgS sgtga GUX1_PENJA : 491- 498: tttvt Ttt-TssgS sgtga GUX1_PENJA : 515- 522: ggngw Tgp-TtcvS pytct GUX1_PHACH : 99- 107: adytg TygiTasgS slklq GUX1_PHACH : 443- 450: fgdln Tty-TgtvS sssvs GUX1_PHACH : 444- 452: gdlnt TytgTvssS svsss GUX1_PHACH : 494- 501: ggigy Tgs-TtcaS pytch GUX1_TRIRE : 397- 404: lwlds Typ-TnetS stpga GUX1_TRIVI : 397- 404: lwlds Typ-TdetS stpga GUX2_TRIRE : 11- 18: lttla Tla-TlaaS vplee GUXC_FUSOX : 406- 413: dstyp Tds-TkvgS qrgsc R 18: 12.0102 17( 13) G-x(3)-C-x(1,2)-G Occurences: 17(13) GUN1_TRIRE : 438- 445: gigys GcktCtsG ttcqy GUN2_TRIRE : 36- 43: gigws GptnCapG sacst GUN5_TRIRE : 66- 73: lfdta GaswCgaG cgkcy GUN5_TRIRE : 164- 170: aasdw GtclCv-G qqetd GUNB_FUSOX : 40- 47: gqnws GtpcCtsG nkcvk GUNF_FUSOX : 32- 39: gngwt GattCasG lkcek GUNK_FUSOX : 353- 360: saypn GnlaCatG skcvk GUX1_HUMGR : 64- 71: thqvs GstnCytG nkwdt GUX1_HUMGR : 253- 259: pctii GqsrCe-G dscgg GUX1_PENJA : 70- 77: vhsts GstnCytG ntwda GUX1_PHACH : 64- 71: lhsts GytnCytG nqwda GUX1_TRIRE : 251- 257: pcttv GqeiCe-G dgcgg GUX1_TRIRE : 492- 499: gigys GptvCasG ttcqv GUX1_TRIVI : 251- 257: pcttv GqeiCe-G dscgg GUX1_TRIVI : 492- 499: gigyi GptvCasG stcqv GUX2_TRIRE : 41- 48: gqnws GptcCasG stcvy GUXC_FUSOX : 62- 69: thqts GstnCytG nkwdt S 19: 12.0102 25( 13) T-x(2,3)-G-x-S Occurences: 25(13) GUN1_TRIRE : 105- 110: aasgv Tts-GsS ltmnq GUN2_TRIRE : 399- 404: ltetp Tss-GnS wtdts GUN5_TRIRE : 124- 130: pvvgg TnqyGyS yhfdi GUN5_TRIRE : 187- 192: ndtgs Tpp-GsS ppats GUNB_FUSOX : 70- 75: aepss Taa-GpS sttat GUNB_FUSOX : 82- 88: ttatk TtatGgS sttag GUNB_FUSOX : 83- 88: tatkt Tat-GgS sttag GUNB_FUSOX : 83- 89: tatkt TatgGsS ttagg GUNB_FUSOX : 90- 95: tggss Tta-GgS vtsap GUNF_FUSOX : 349- 354: kcvgi Tvw-GvS dkdsw GUNK_FUSOX : 94- 100: ygfaa TkisGgS easwc GUX1_HUMGR : 103- 108: stygi Ttn-GdS lslkf GUX1_HUMGR : 250- 255: tphpc Tii-GqS rcegd GUX1_PENJA : 108- 113: qhlrv Tts-GnS lrinf GUX1_PENJA : 317- 322: vtqfl Tnd-GtS tgtls GUX1_PENJA : 346- 351: gnpqs Tiv-GvS gnsit GUX1_PENJA : 493- 499: tvttt TtssGsS gtgar GUX1_PENJA : 494- 499: vtttt Tss-GsS gtgar GUX1_PHACH : 38- 44: tsqkc TksgGcS nlntk GUX1_PHACH : 103- 108: gtygi Tas-GsS lklqf GUX1_PHACH : 301- 306: vtqfi Tnd-GtS agtlt GUX1_TRIRE : 102- 107: stygv Tts-GnS lsigf GUX1_TRIRE : 469- 474: trrpa Ttt-GsS pgptq GUX1_TRIVI : 469- 474: tprpa Tst-GsS pgptq GUX2_TRIRE : 373- 378: naffi Tdq-GrS gkqpt GUXC_FUSOX : 37- 42: twskc Tss-GcS dvkgs T 20: 12.0102 21( 13) G-x(4)-G-x(1,2)-S Occurences: 21(13) GUN1_TRIRE : 103- 110: dyaas GvttsGs-S ltmnq GUN2_TRIRE : 379- 387: sdvyl GyvgwGagS fdsty GUN5_TRIRE : 8- 16: atlvl GslivGavS aykat GUN5_TRIRE : 31- 38: ydgqe GacgcGs-S sgafp GUN5_TRIRE : 31- 39: ydgqe GacgcGssS gafpw GUN5_TRIRE : 123- 130: cpvvg GtnqyGy-S yhfdi GUN5_TRIRE : 185- 192: lgndt GstppGs-S ppats GUNB_FUSOX : 412- 419: vwvkp GgesdGt-S dtsaa GUNF_FUSOX : 278- 286: kwiaa GipidGigS qghla GUNF_FUSOX : 347- 354: vpkcv GitvwGv-S dkdsw GUNK_FUSOX : 163- 171: fgkal GgaqyGgiS srsec GUNK_FUSOX : 164- 171: gkalg GaqygGi-S srsec GUNK_FUSOX : 164- 172: gkalg GaqygGisS rsecd GUX1_HUMGR : 101- 108: ytsty GittnGd-S lslkf GUX1_HUMGR : 259- 267: qsrce GdscgGtyS nerya GUX1_PENJA : 263- 271: qtmct GqrcgGtyS tdryg GUX1_PHACH : 101- 108: ytgty GitasGs-S lklqf GUX1_TRIRE : 100- 107: yasty GvttsGn-S lsigf GUX1_TRIRE : 257- 265: qeice GdgcgGtyS dnryg GUX1_TRIVI : 257- 265: qeice GdscgGtyS gdryg GUX2_TRIRE : 421- 428: vwvkp GgecdGt-S dssap GUXC_FUSOX : 110- 118: nqlsl GfvtnGpyS knigs GUXC_FUSOX : 257- 265: qhsct GdscgGtyS sdryg Number of patterns evaluated by Pratt:5349 Total running time: 6 seconds