------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 14 sequences from file CBD_BACTERIAL PATTERN CONSERVATION: CM: min Nr of Seqs to Match 14 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CBD_BACTERIAL.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CHIT_STRLI 619 CHIT_STRPL 610 GUN1_BUTFI 547 GUNA_CELFI 449 GUNA_MICBI 456 GUNA_PSEFL 962 GUNA_STRLI 459 GUNB_CELFI 1045 GUNB_PSEFL 511 GUNC_PSEFL 748 GUX_CELFI 484 XYNA_PSEFL 611 XYNB_PSEFL 592 XYNC_PSEFL 571 Pratt run started at Thu Feb 6 19:05:01 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 14.6802 26( 14) A-x(0,2)-A-x(2,4)-A-A 2: 12.5102 22( 14) A-x(2)-A-x(4)-A 3: 12.0102 25( 14) G-x(0,1)-A-A 4: 12.0102 17( 14) G-x(2)-A-x(3,4)-V 5: 12.0102 22( 14) S-x(3)-G-x(3,4)-S 6: 12.0102 50( 14) A-x(5)-A-x(1,2)-A 7: 12.0102 29( 14) S-x(2,3)-G-x(2)-V 8: 12.0102 40( 14) G-x(3,4)-S-x-S 9: 12.0102 32( 14) G-x(2,3)-G-S 10: 12.0102 33( 14) G-x(4,5)-S-x-S 11: 12.0102 45( 14) A-x(1,2)-A-x(5)-A 12: 12.0102 26( 14) A-x(3,4)-G-x(2)-A 13: 12.0102 32( 14) A-x(5)-A-x(4,5)-A 14: 12.0102 32( 14) T-x(2,3)-S-x-S 15: 12.0102 26( 14) A-x(0,1)-G-x(5)-A 16: 12.0102 25( 14) G-x(2)-G-x(0,1)-S 17: 12.0102 23( 14) S-x(3,4)-G-x(3)-G 18: 12.0102 25( 14) G-x(4,5)-G-F 19: 12.0102 24( 14) G-x(2)-A-x(2,3)-G 20: 12.0102 47( 14) A-x(4,5)-A-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 15.3520 17( 14) S-x(2,3)-G-x-[AEGNQST]-V-x(2)-[DGQST] B 2: 14.9105 21( 14) A-x(1,2)-A-x(3)-[AGNQST]-x-A-[ACDGNSTV] C 3: 14.6802 26( 14) A-x(0,2)-A-x(2,4)-A-A D 4: 14.2213 25( 14) A-x(5)-A-x(1,2)-A-[AGPT] E 5: 14.2102 23( 14) G-x(2,3)-G-S-x-[APST] F 6: 14.2102 17( 14) G-x(2)-G-x(0,1)-S-x-[APST] G 7: 13.8878 28( 14) G-x(3,4)-S-x-S-x(2)-[ADSTV] H 8: 13.4456 18( 14) S-x(3)-G-x(3,4)-S-x(3)-[ADGNQST] I 9: 13.4429 32( 14) A-x(1,2)-A-x(4)-[AEGNQST]-A J 10: 13.4344 21( 14) A-x(5)-A-x(4,5)-A-[ADEGQST] K 11: 13.4332 22( 14) S-x(2,3)-G-x(2)-V-x(2)-[DEGNQST] L 12: 13.2519 33( 14) A-x(4,5)-A-A-[ACDGNSTV] M 13: 12.5102 22( 14) A-x(2)-A-x(4)-A N 14: 12.0102 25( 14) G-x(0,1)-A-A O 15: 12.0102 17( 14) G-x(2)-A-x(3,4)-V P 16: 12.0102 33( 14) G-x(4,5)-S-x-S Q 17: 12.0102 26( 14) A-x(3,4)-G-x(2)-A R 18: 12.0102 32( 14) T-x(2,3)-S-x-S S 19: 12.0102 26( 14) A-x(0,1)-G-x(5)-A T 20: 12.0102 25( 14) G-x(2)-G-x(0,1)-S Best patterns with alignements: fitness hits(seqs) Pattern A 1: 15.3520 17( 14) S-x(2,3)-G-x-[AEGNQST]-V-x(2)-[DGQST] Occurences: 17(14) CHIT_STRLI : 130- 139: klngg Scd-GtSVpgD aapsa CHIT_STRPL : 130- 139: kingg Scd-GsSVpgD eapsa GUN1_BUTFI : 535- 545: fgiqg SgsiGtSVniS vq GUNA_CELFI : 86- 95: wngta Stn-GgQVsvT slpwn GUNA_CELFI : 250- 259: grdcg Shs-GgGVseS eyarw GUNA_MICBI : 386- 396: kntgs SpinGwTVqwT lpsgq GUNA_PSEFL : 787- 797: asihv SnqrGyEVsmT vsdgr GUNA_STRLI : 83- 92: wnatw Sqs-GsAVtaG gvdwn GUNB_CELFI : 337- 346: qkvpy Spg-GqAVldS wgalr GUNB_CELFI : 996- 1005: wsatw Sqt-GtTVtaT glswn GUNB_PSEFL : 97- 107: vgwnt SipiGsSVefG vqgnn GUNC_PSEFL : 63- 73: tnsts SvinGwNVswQ ynsnr GUX_CELFI : 377- 387: tptpt SgpaGcQVlwG vnqwn XYNA_PSEFL : 55- 65: tnrgs SainGwSVnwQ yatnr XYNB_PSEFL : 287- 296: nidsl Svv-GgTVraG ncgsv XYNC_PSEFL : 287- 296: nidsl Svv-GgTVraG ncgsv XYNC_PSEFL : 393- 402: ismng Srv-GnTVapQ vfyfr B 2: 14.9105 21( 14) A-x(1,2)-A-x(3)-[AGNQST]-x-A-[ACDGNSTV] Occurences: 21(14) CHIT_STRLI : 25- 35: glvgl AspAqaaTsAT atfak CHIT_STRLI : 28- 37: glasp Aq-AatsAtAT fakts CHIT_STRPL : 25- 35: glvgl AspAqaaTsAT atfqk CHIT_STRPL : 28- 37: glasp Aq-AatsAtAT fqkts CHIT_STRPL : 80- 90: tkvts AwdAtvtNsAD hwtak GUN1_BUTFI : 23- 33: fvfvm AipAtkvSaAG gtdrs GUN1_BUTFI : 227- 237: qvald AirAtggNnAT rcvmv GUNA_CELFI : 7- 16: strrt Aa-AllaAaAV avggl GUNA_CELFI : 220- 230: ashaq AevAdytGrAV aagkt GUNA_MICBI : 9- 18: irrfl At-AlaaAtAG vgaiv GUNA_PSEFL : 340- 350: lclta AerAwnaAqAN pndiy GUNA_STRLI : 19- 28: ivglt Al-AgppAqAA tgcka GUNB_CELFI : 757- 766: pgtpv As-AvtsTgAT lawap GUNB_PSEFL : 21- 31: gllga AlsAgsiQaAV ceyrv GUNC_PSEFL : 27- 36: lgvsi Al-AafsNvAA agcey GUX_CELFI : 338- 348: alvwd AsyAkkpAyAA vmeaf XYNA_PSEFL : 4- 13: mrt Am-AkslGaAA flgaa XYNA_PSEFL : 277- 286: fpigv Av-AasgGnAD iftss XYNB_PSEFL : 30- 39: gtalt Al-AfnaSaAC tytid XYNC_PSEFL : 26- 36: lvstg AalAilsQaAS aacty XYNC_PSEFL : 27- 36: vstga Al-AilsQaAS aacty C 3: 14.6802 26( 14) A-x(0,2)-A-x(2,4)-A-A Occurences: 26(14) CHIT_STRLI : 7- 12: rfrhk A--Aal--AA tlalp CHIT_STRPL : 7- 12: rfrhk A--Aal--AA tlalp GUN1_BUTFI : 23- 32: fvfvm AipAtkvsAA ggtdr GUNA_CELFI : 7- 13: strrt Aa-All--AA aavav GUNA_CELFI : 7- 13: strrt A--Aall-AA aavav GUNA_CELFI : 7- 14: strrt Aa-Alla-AA avavg GUNA_CELFI : 7- 14: strrt A--AallaAA avavg GUNA_CELFI : 7- 15: strrt Aa-AllaaAA vavgg GUNA_CELFI : 8- 13: trrta A--All--AA aavav GUNA_CELFI : 8- 14: trrta A--Alla-AA avavg GUNA_CELFI : 8- 15: trrta A--AllaaAA vavgg GUNA_MICBI : 9- 15: irrfl At-Ala--AA tagvg GUNA_MICBI : 47- 53: dpqsn A--Akwv-AA npndp GUNA_PSEFL : 309- 316: vppst A--AtlnlAA taaqa GUNA_PSEFL : 315- 322: atlnl AatAaq--AA riwkd GUNA_PSEFL : 315- 322: atlnl A--AtaaqAA riwkd GUNA_PSEFL : 316- 322: tlnla At-Aaq--AA riwkd GUNA_PSEFL : 333- 340: idagf A--AlcltAA erawn GUNA_PSEFL : 340- 347: lclta AerAwn--AA qanpn GUNA_STRLI : 363- 369: kddyr A--Avrp-AA trlpl GUNB_CELFI : 25- 32: vgvlv AplAtg--AA aapty GUNB_CELFI : 25- 33: vgvlv AplAtga-AA aptyn GUNB_CELFI : 25- 34: vgvlv AplAtgaaAA ptyny GUNB_CELFI : 186- 191: pgsdv A--Aet--AA alass GUNB_CELFI : 186- 192: pgsdv A--Aeta-AA lassa GUNB_PSEFL : 21- 30: gllga AlsAgsiqAA vceyr GUNC_PSEFL : 27- 36: lgvsi AlaAfsnvAA agcey GUNC_PSEFL : 29- 36: vsial A--AfsnvAA agcey GUX_CELFI : 194- 201: gyiet AfrAar--AA dptak XYNA_PSEFL : 4- 12: mrt Am-AkslgAA aflga XYNA_PSEFL : 11- 18: akslg Aa-Aflg-AA lfaht XYNA_PSEFL : 11- 18: akslg A--AaflgAA lfaht XYNA_PSEFL : 12- 18: kslga A--Aflg-AA lfaht XYNA_PSEFL : 18- 26: aflga AlfAhtl-AA qtatc XYNB_PSEFL : 30- 38: gtalt Al-AfnasAA ctyti XYNC_PSEFL : 26- 35: lvstg AalAilsqAA saact XYNC_PSEFL : 27- 35: vstga Al-AilsqAA saact D 4: 14.2213 25( 14) A-x(5)-A-x(1,2)-A-[AGPT] Occurences: 25(14) CHIT_STRLI : 25- 35: glvgl AspaqaAtsAT atfak CHIT_STRLI : 28- 37: glasp AqaatsAt-AT fakts CHIT_STRPL : 25- 35: glvgl AspaqaAtsAT atfqk CHIT_STRPL : 28- 37: glasp AqaatsAt-AT fqkts GUN1_BUTFI : 83- 92: pattk AlidevAk-AG fntir GUNA_CELFI : 23- 32: vgglt AltttaAq-AA pgcrv GUNA_CELFI : 23- 33: vgglt AltttaAqaAP gcrvd GUNA_CELFI : 223- 232: aqaev AdytgrAv-AA gktpm GUNA_CELFI : 223- 233: aqaev AdytgrAvaAG ktpml GUNA_MICBI : 9- 18: irrfl AtalaaAt-AG vgaiv GUNA_MICBI : 21- 30: tagvg AivtaiAs-AG pahay GUNA_MICBI : 90- 99: raevd AyvgaaAa-AG kipim GUNA_MICBI : 166- 176: spseq AevqasAvgAG kkfka GUNA_PSEFL : 309- 319: vppst AatlnlAatAA qaari GUNA_PSEFL : 310- 319: ppsta AtlnlaAt-AA qaari GUNA_STRLI : 19- 28: ivglt AlagppAq-AA tgcka GUNA_STRLI : 19- 29: ivglt AlagppAqaAT gckae GUNB_CELFI : 19- 29: salav AvgvlvAplAT gaaaa GUNB_CELFI : 25- 34: vgvlv AplatgAa-AA ptyny GUNB_CELFI : 25- 35: vgvlv AplatgAaaAP tynya GUNB_CELFI : 726- 735: kakdv AgnvsaAs-AA vtftt GUNB_PSEFL : 208- 218: grscv ArttcsAqpAP ygivs GUNC_PSEFL : 29- 38: vsial AafsnvAa-AG ceyvv GUX_CELFI : 33- 42: tlvvg AtvvlpAq-AA ttlke GUX_CELFI : 33- 43: tlvvg AtvvlpAqaAT tlkea XYNA_PSEFL : 211- 221: qrsci ArstcaAqpAP fgivg XYNB_PSEFL : 161- 170: ssvas AlllqeAq-AG fcrvd XYNC_PSEFL : 29- 38: tgaal AilsqaAs-AA ctyti XYNC_PSEFL : 161- 170: ssvas AlllqeAq-AG fcrvd XYNC_PSEFL : 522- 532: llmve AyisgrAfsAP gqrpa E 5: 14.2102 23( 14) G-x(2,3)-G-S-x-[APST] Occurences: 23(14) CHIT_STRLI : 47- 53: sdwgt Gfg-GSwT vkntg CHIT_STRLI : 112- 118: asvsf Gfn-GSgP gspsn CHIT_STRLI : 115- 122: sfgfn GsgpGSpS nckln CHIT_STRPL : 112- 118: asvsf Gfn-GSgP gspsg CHIT_STRPL : 115- 122: sfgfn GsgpGSpS gckin GUN1_BUTFI : 531- 537: asvdf Giq-GSgS igtsv GUNA_CELFI : 112- 118: gtasf Gfn-GSwA gsnpt GUNA_CELFI : 115- 122: sfgfn GswaGSnP tpasf GUNA_CELFI : 245- 252: vyaip GrdcGShS gggvs GUNA_MICBI : 438- 444: gstsf Gfl-GSgT gqlss GUNA_PSEFL : 151- 158: etpyt GggrGSyA shsrw GUNA_PSEFL : 152- 158: tpytg Ggr-GSyA shsrw GUNA_STRLI : 109- 115: asadl Gfv-GSfT ganpa GUNB_CELFI : 1022- 1028: qstdi Gfn-GShP gtntn GUNB_PSEFL : 128- 134: tgaic Ggq-GSsA pssva GUNB_PSEFL : 364- 370: synap Gdp-GSaA lagkt GUNC_PSEFL : 223- 230: qpapy GivgGSsS pssis GUX_CELFI : 459- 465: gtaqf Gfn-GShT gtnaa XYNA_PSEFL : 223- 229: qpapf Giv-GSgS stpvs XYNB_PSEFL : 116- 123: sfglq GeknGStA erptv XYNB_PSEFL : 296- 302: gtvra Gnc-GSvS ssssv XYNC_PSEFL : 116- 123: sfglq GeknGStA erptv XYNC_PSEFL : 296- 302: gtvra Gnc-GSvS ssssv F 6: 14.2102 17( 14) G-x(2)-G-x(0,1)-S-x-[APST] Occurences: 17(14) CHIT_STRLI : 47- 53: sdwgt GfgG-SwT vkntg CHIT_STRLI : 112- 118: asvsf GfnG-SgP gspsn CHIT_STRPL : 112- 118: asvsf GfnG-SgP gspsg GUN1_BUTFI : 531- 537: asvdf GiqG-SgS igtsv GUNA_CELFI : 112- 118: gtasf GfnG-SwA gsnpt GUNA_MICBI : 438- 444: gstsf GflG-SgT gqlss GUNA_PSEFL : 152- 158: tpytg GgrG-SyA shsrw GUNA_STRLI : 109- 115: asadl GfvG-SfT ganpa GUNB_CELFI : 1022- 1028: qstdi GfnG-ShP gtntn GUNB_PSEFL : 110- 117: efgvq GnnGsSrA qvpav GUNB_PSEFL : 128- 134: tgaic GgqG-SsA pssva GUNB_PSEFL : 128- 135: tgaic GgqGsSaP ssvas GUNB_PSEFL : 364- 370: synap GdpG-SaA lagkt GUNC_PSEFL : 223- 230: qpapy GivGgSsS pssis GUX_CELFI : 459- 465: gtaqf GfnG-ShT gtnaa XYNA_PSEFL : 223- 229: qpapf GivG-SgS stpvs XYNB_PSEFL : 296- 302: gtvra GncG-SvS ssssv XYNC_PSEFL : 296- 302: gtvra GncG-SvS ssssv G 7: 13.8878 28( 14) G-x(3,4)-S-x-S-x(2)-[ADSTV] Occurences: 28(14) CHIT_STRLI : 199- 208: ngltk Gtay-SySvkA rdtad CHIT_STRPL : 199- 208: ngltk Gtdy-SySvkA rdtgd GUN1_BUTFI : 531- 540: asvdf Giqg-SgSigT svnis GUNA_CELFI : 253- 262: cgshs Gggv-SeSeyA rwvdt GUNA_MICBI : 409- 419: tqlwn GdlstSgSnvT vrnvs GUNA_PSEFL : 155- 164: tgggr Gsya-ShSrwS rpagh GUNA_PSEFL : 606- 615: faatq Ggss-SsSssS sssvp GUNA_PSEFL : 606- 616: faatq GgsssSsSssS ssvpv GUNA_PSEFL : 607- 616: aatqg Gsss-SsSssS ssvpv GUNA_PSEFL : 607- 617: aatqg GssssSsSssS svpvs GUNA_PSEFL : 689- 698: tqsgw Gwen-SqSciS astcs GUNA_PSEFL : 713- 722: pygiv Gaas-SsSqaA nrspt GUNA_PSEFL : 777- 786: tvvas Gsss-SaSihV snqrg GUNA_STRLI : 128- 137: sftln Gatc-SgSvtD pptdp GUNB_CELFI : 389- 399: inyal GdnprSsSyvV gfgan GUNB_PSEFL : 165- 174: sssvp Gtss-SsSssV ltgaq GUNC_PSEFL : 89- 99: npnls GsnpySaSnlS wngti GUNC_PSEFL : 135- 145: gaact GgtssSvSssS vvsss GUNC_PSEFL : 136- 145: aactg Gtss-SvSssS vvsss GUNC_PSEFL : 223- 233: qpapy GivggSsSpsS issss GUNC_PSEFL : 226- 235: pygiv Ggss-SpSsiS sssvr GUX_CELFI : 216- 226: dynve GinakSnSlyD lvkdf XYNA_PSEFL : 81- 91: nanvs GsnpySaSnlS wngni XYNA_PSEFL : 121- 131: erpsv GgsicSgSvaS ssapa XYNA_PSEFL : 122- 131: rpsvg Gsic-SgSvaS ssapa XYNA_PSEFL : 127- 136: gsics Gsva-SsSapA ssvps XYNB_PSEFL : 296- 305: gtvra Gncg-SvSssS svqss XYNB_PSEFL : 299- 309: ragnc GsvssSsSvqS sssss XYNC_PSEFL : 296- 305: gtvra Gncg-SvSssS svqss XYNC_PSEFL : 299- 309: ragnc GsvssSsSvqS sssss H 8: 13.4456 18( 14) S-x(3)-G-x(3,4)-S-x(3)-[ADGNQST] Occurences: 18(14) CHIT_STRLI : 108- 120: lapga SvsfGfng-SgpgS psnck CHIT_STRPL : 108- 120: lapga SvsfGfng-SgpgS psgck CHIT_STRPL : 134- 147: gscdg SsvpGdeapSapgT ptasn GUN1_BUTFI : 527- 539: lepsa SvdfGiqg-SgsiG tsvni GUNA_CELFI : 102- 114: lpwng SiptGgta-SfgfN gswag GUNA_CELFI : 358- 370: qttad SkayGqqi-SqrlG gkkfv GUNA_MICBI : 434- 446: vpagg StsfGflg-SgtgQ lsssi GUNA_PSEFL : 787- 799: asihv SnqrGyev-SmtvS dgrgg GUNA_STRLI : 105- 117: latga SadlGfvg-SftgA npapt GUNB_CELFI : 954- 966: vystn SwnvGftg-SvkiT ntgtt GUNB_CELFI : 1018- 1030: lqpgq StdiGfng-ShpgT ntnpa GUNB_PSEFL : 56- 68: tnngs StinGwsv-SwnyT dgsrv GUNB_PSEFL : 161- 173: sssvs SsvpGtss-SsssS vltga GUNC_PSEFL : 63- 75: tnsts SvinGwnv-SwqyN snrvt GUX_CELFI : 100- 113: sqnsf SfgaGdrvaSyaaD tgkel XYNA_PSEFL : 123- 136: psvgg SicsGsvasSsapA ssvps XYNB_PSEFL : 103- 115: mswng SiapGqsi-SfglQ gekng XYNC_PSEFL : 103- 115: mswng SiapGqsi-SfglQ gekng I 9: 13.4429 32( 14) A-x(1,2)-A-x(4)-[AEGNQST]-A Occurences: 32(14) CHIT_STRLI : 25- 34: glvgl AspAqaatSA tatfa CHIT_STRLI : 28- 36: glasp Aq-AatsaTA tfakt CHIT_STRLI : 141- 150: vpgda ApsApgtpTA snitd CHIT_STRLI : 456- 464: ydffg Aw-AkngpTA phspl CHIT_STRPL : 25- 34: glvgl AspAqaatSA tatfq CHIT_STRPL : 28- 36: glasp Aq-AatsaTA tfqkt CHIT_STRPL : 80- 89: tkvts AwdAtvtnSA dhwta CHIT_STRPL : 141- 150: vpgde ApsApgtpTA snitd CHIT_STRPL : 457- 465: ydffg Aw-AkngpTA phspl GUN1_BUTFI : 23- 32: fvfvm AipAtkvsAA ggtdr GUN1_BUTFI : 227- 236: qvald AirAtggnNA trcvm GUNA_CELFI : 7- 15: strrt Aa-AllaaAA vavgg GUNA_CELFI : 14- 23: allaa AavAvgglTA lttta GUNA_CELFI : 15- 23: llaaa Av-AvgglTA lttta GUNA_MICBI : 9- 17: irrfl At-AlaaaTA gvgai GUNA_MICBI : 13- 21: latal Aa-AtagvGA ivtai GUNA_PSEFL : 330- 339: wkdid AgfAalclTA aeraw GUNA_PSEFL : 340- 349: lclta AerAwnaaQA npndi GUNA_STRLI : 19- 27: ivglt Al-AgppaQA atgck GUNB_CELFI : 25- 34: vgvlv AplAtgaaAA ptyny GUNB_CELFI : 523- 532: irnqs AfpArslkNA kvryw GUNB_CELFI : 757- 765: pgtpv As-AvtstGA tlawa GUNB_PSEFL : 21- 30: gllga AlsAgsiqAA vceyr GUNC_PSEFL : 27- 36: lgvsi AlaAfsnvAA agcey GUX_CELFI : 39- 48: tvvlp AqaAttlkEA adgag XYNA_PSEFL : 4- 12: mrt Am-AkslgAA aflga XYNA_PSEFL : 277- 285: fpigv Av-AasggNA difts XYNB_PSEFL : 30- 38: gtalt Al-AfnasAA ctyti XYNB_PSEFL : 159- 167: sassv As-AlllqEA qagfc XYNC_PSEFL : 26- 35: lvstg AalAilsqAA saact XYNC_PSEFL : 27- 35: vstga Al-AilsqAA saact XYNC_PSEFL : 159- 167: sassv As-AlllqEA qagfc J 10: 13.4344 21( 14) A-x(5)-A-x(4,5)-A-[ADEGQST] Occurences: 21(14) CHIT_STRLI : 19- 31: lalpl AglvglAspaq-AA tsata CHIT_STRLI : 19- 32: lalpl AglvglAspaqaAT satat CHIT_STRLI : 25- 37: glvgl AspaqaAtsat-AT fakts CHIT_STRPL : 19- 31: lalpl AglvglAspaq-AA tsata CHIT_STRPL : 19- 32: lalpl AglvglAspaqaAT satat CHIT_STRPL : 25- 37: glvgl AspaqaAtsat-AT fqkts GUN1_BUTFI : 224- 237: dynqv AldairAtggnnAT rcvmv GUNA_CELFI : 17- 29: aaaav AvggltAlttt-AA qaapg GUNA_CELFI : 17- 30: aaaav AvggltAltttaAQ aapgc GUNA_MICBI : 15- 28: talaa AtagvgAivtaiAS agpah GUNA_MICBI : 204- 217: padem AsrlrgAdiansAD gialn GUNA_PSEFL : 309- 322: vppst AatlnlAataaqAA riwkd GUNA_PSEFL : 310- 322: ppsta AtlnlaAtaaq-AA riwkd GUNA_PSEFL : 334- 347: dagfa AlcltaAerawnAA qanpn GUNA_STRLI : 21- 34: gltal AgppaqAatgckAE ytits GUNA_STRLI : 343- 355: nnpvn AtnimyAfhfy-AA shkdd GUNA_STRLI : 343- 356: nnpvn AtnimyAfhfyaAS hkddy GUNB_CELFI : 19- 32: salav AvgvlvAplatgAA aapty GUNB_CELFI : 28- 41: lvapl AtgaaaAptynyAE alqks GUNB_PSEFL : 329- 341: dkipf AvsptlAygya-AT ssgdv GUNC_PSEFL : 322- 335: epsnd AdnpsgApmelyAG nmwwv GUX_CELFI : 27- 40: trrra AtlvvgAtvvlpAQ aattl XYNA_PSEFL : 6- 18: mrtam AkslgaAaflg-AA lfaht XYNB_PSEFL : 155- 168: tssss AssvasAlllqeAQ agfcr XYNC_PSEFL : 155- 168: tssss AssvasAlllqeAQ agfcr K 11: 13.4332 22( 14) S-x(2,3)-G-x(2)-V-x(2)-[DEGNQST] Occurences: 22(14) CHIT_STRLI : 130- 139: klngg Scd-GtsVpgD aapsa CHIT_STRPL : 130- 139: kingg Scd-GssVpgD eapsa GUN1_BUTFI : 535- 545: fgiqg SgsiGtsVniS vq GUNA_CELFI : 86- 95: wngta Stn-GgqVsvT slpwn GUNA_CELFI : 250- 259: grdcg Shs-GggVseS eyarw GUNA_MICBI : 386- 396: kntgs SpinGwtVqwT lpsgq GUNA_PSEFL : 787- 797: asihv SnqrGyeVsmT vsdgr GUNA_STRLI : 83- 92: wnatw Sqs-GsaVtaG gvdwn GUNB_CELFI : 179- 188: hkisa Scp-GsdVaaE taaal GUNB_CELFI : 337- 346: qkvpy Spg-GqaVldS wgalr GUNB_CELFI : 996- 1005: wsatw Sqt-GttVtaT glswn GUNB_PSEFL : 56- 66: tnngs StinGwsVswN ytdgs GUNB_PSEFL : 97- 107: vgwnt SipiGssVefG vqgnn GUNC_PSEFL : 63- 73: tnsts SvinGwnVswQ ynsnr GUNC_PSEFL : 493- 503: aklgv SnliGidVfnE pydyt GUX_CELFI : 377- 387: tptpt SgpaGcqVlwG vnqwn XYNA_PSEFL : 55- 65: tnrgs SainGwsVnwQ yatnr XYNA_PSEFL : 101- 111: iqpgq SvsfGfqVnkN ggsae XYNB_PSEFL : 287- 296: nidsl Svv-GgtVraG ncgsv XYNC_PSEFL : 287- 296: nidsl Svv-GgtVraG ncgsv XYNC_PSEFL : 389- 398: qaphi Smn-GsrVgnT vapqv XYNC_PSEFL : 393- 402: ismng Srv-GntVapQ vfyfr L 12: 13.2519 33( 14) A-x(4,5)-A-A-[ACDGNSTV] Occurences: 33(14) CHIT_STRLI : 25- 32: glvgl Aspaq-AAT satat CHIT_STRPL : 25- 32: glvgl Aspaq-AAT satat GUN1_BUTFI : 26- 33: vmaip Atkvs-AAG gtdrs GUNA_CELFI : 7- 14: strrt Aaall-AAA avavg GUNA_CELFI : 7- 15: strrt AaallaAAA vavgg GUNA_CELFI : 8- 15: trrta Aalla-AAA vavgg GUNA_CELFI : 8- 16: trrta AallaaAAV avggl GUNA_CELFI : 9- 16: rrtaa Allaa-AAV avggl GUNA_CELFI : 425- 433: gesdg AcnggpAAG qwwqe GUNA_MICBI : 9- 16: irrfl Atala-AAT agvga GUNA_MICBI : 47- 54: dpqsn Aakwv-AAN pndpr GUNA_MICBI : 90- 97: raevd Ayvga-AAA agkip GUNA_MICBI : 90- 98: raevd AyvgaaAAA gkipi GUNA_MICBI : 130- 138: htayr AwideiAAG lrnrp GUNA_MICBI : 175- 183: asavg AgkkfkAAS sqakv GUNA_PSEFL : 309- 317: vppst AatlnlAAT aaqaa GUNA_PSEFL : 310- 317: ppsta Atlnl-AAT aaqaa GUNA_PSEFL : 372- 380: gdrfv AdefywAAA elyit GUNA_PSEFL : 715- 723: givga AssssqAAN rsptl GUNA_STRLI : 21- 29: gltal AgppaqAAT gckae GUNA_STRLI : 148- 155: ptdpp Atgtp-AAV ngqlh GUNA_STRLI : 349- 356: tnimy Afhfy-AAS hkddy GUNA_STRLI : 363- 370: kddyr Aavrp-AAT rlplf GUNB_CELFI : 25- 33: vgvlv AplatgAAA aptyn GUNB_CELFI : 667- 674: vttvg Aslsw-AAS tdags GUNB_CELFI : 726- 733: kakdv Agnvs-AAS aavtf GUNB_PSEFL : 24- 31: gaals Agsiq-AAV ceyrv GUNB_PSEFL : 470- 477: gctwf Aewfe-AAD npslk GUNC_PSEFL : 29- 37: vsial AafsnvAAA gceyv GUNC_PSEFL : 30- 37: siala Afsnv-AAA gceyv GUNC_PSEFL : 30- 38: siala AfsnvaAAG ceyvv GUX_CELFI : 42- 50: lpaqa AttlkeAAD gagrd GUX_CELFI : 194- 202: gyiet AfraarAAD ptakl GUX_CELFI : 341- 349: wdasy AkkpayAAV meafg XYNA_PSEFL : 6- 13: mrtam Akslg-AAA flgaa XYNB_PSEFL : 32- 39: altal Afnas-AAC tytid XYNC_PSEFL : 29- 36: tgaal Ailsq-AAS aacty M 13: 12.5102 22( 14) A-x(2)-A-x(4)-A Occurences: 22(14) CHIT_STRLI : 28- 36: glasp AqaAtsatA tfakt CHIT_STRLI : 31- 39: spaqa AtsAtatfA ktsdw CHIT_STRPL : 28- 36: glasp AqaAtsatA tfqkt GUN1_BUTFI : 23- 31: fvfvm AipAtkvsA aggtd GUNA_CELFI : 9- 17: rrtaa AllAaaavA vgglt GUNA_CELFI : 215- 223: gnwad AshAqaevA dytgr GUNA_MICBI : 119- 127: cggps AggApnhtA yrawi GUNA_MICBI : 242- 250: ksvls AigAshlrA vidts GUNA_PSEFL : 922- 930: gnnpy AasAlgwnA niqpg GUNA_STRLI : 25- 33: lagpp AqaAtgckA eytit GUNB_CELFI : 25- 33: vgvlv AplAtgaaA aptyn GUNB_PSEFL : 21- 29: gllga AlsAgsiqA avcey GUNC_PSEFL : 27- 35: lgvsi AlaAfsnvA aagce GUX_CELFI : 83- 91: fnlvv AenAmkwdA tepsq GUX_CELFI : 197- 205: etafr AarAadptA klcin XYNA_PSEFL : 18- 26: aflga AlfAhtlaA qtatc XYNA_PSEFL : 277- 285: fpigv AvaAsggnA difts XYNB_PSEFL : 27- 35: lcvgt AltAlafnA saact XYNB_PSEFL : 196- 204: antnn AqgAavvwA idats XYNC_PSEFL : 26- 34: lvstg AalAilsqA asaac XYNC_PSEFL : 196- 204: antnn AqgAavvwA idats XYNC_PSEFL : 537- 545: pgqrp AwmAhgplA dtean N 14: 12.0102 25( 14) G-x(0,1)-A-A Occurences: 25(14) CHIT_STRLI : 138- 141: gtsvp GdAA psapg CHIT_STRPL : 525- 528: ggtat GpAA gtyea GUN1_BUTFI : 342- 345: adyyw GrAA rysnv GUNA_CELFI : 429- 432: gacng GpAA gqwwq GUNA_MICBI : 93- 95: vdayv G-AA aaagk GUNA_MICBI : 93- 96: vdayv GaAA aagki GUNA_PSEFL : 331- 334: kdida GfAA lclta GUNA_PSEFL : 713- 715: pygiv G-AA ssssq GUNA_PSEFL : 751- 753: tlhin G-AA sdpdg GUNA_STRLI : 419- 422: sdade GsAA frpgt GUNB_CELFI : 30- 32: aplat G-AA aapty GUNB_CELFI : 30- 33: aplat GaAA aptyn GUNB_CELFI : 542- 545: wfttd GfAA sdvtl GUNB_PSEFL : 19- 21: gcgll G-AA lsags GUNB_PSEFL : 337- 340: ptlay GyAA tssgd GUNB_PSEFL : 367- 370: apgdp GsAA lagkt GUNC_PSEFL : 130- 132: sptvn G-AA ctggt GUX_CELFI : 331- 333: vfpge G-AA lvwda XYNA_PSEFL : 10- 12: maksl G-AA aflga XYNA_PSEFL : 10- 13: maksl GaAA flgaa XYNA_PSEFL : 16- 18: aaafl G-AA lfaht XYNB_PSEFL : 62- 64: lkndt G-AA innwn XYNB_PSEFL : 130- 132: rptvt G-AA cnsat XYNB_PSEFL : 198- 200: tnnaq G-AA vvwai XYNC_PSEFL : 25- 27: glvst G-AA lails XYNC_PSEFL : 62- 64: lkndt G-AA innwn XYNC_PSEFL : 130- 132: rptvt G-AA cnsat XYNC_PSEFL : 198- 200: tnnaq G-AA vvwai O 15: 12.0102 17( 14) G-x(2)-A-x(3,4)-V Occurences: 17(14) CHIT_STRLI : 101- 109: nvgwn GtlApgasV sfgfn CHIT_STRPL : 101- 109: nvgwn GtlApgasV sfgfn GUN1_BUTFI : 233- 240: iratg GnnAtrc-V mvpgy GUN1_BUTFI : 342- 350: adyyw GraArysnV amvlw GUNA_CELFI : 409- 416: vndgs GldAllw-V klpge GUNA_MICBI : 301- 308: pgead GciAtpg-V fvpdr GUNA_MICBI : 373- 380: nqwpg GfqAevt-V kntgs GUNA_PSEFL : 877- 884: nqwnn GftAvir-V rnngs GUNA_STRLI : 103- 111: rtlat GasAdlgfV gsftg GUNB_CELFI : 12- 20: rtlva GgsAlavaV gvlva GUNB_PSEFL : 131- 138: icggq GssApss-V assss GUNC_PSEFL : 485- 492: lreia GlsAklg-V snlig GUX_CELFI : 158- 165: adhfe GkvAswd-V vneaf GUX_CELFI : 158- 166: adhfe GkvAswdvV neafa GUX_CELFI : 394- 401: nqwnt GftAnvt-V kntss XYNA_PSEFL : 112- 120: qvnkn GgsAerpsV ggsic XYNB_PSEFL : 120- 128: qgekn GstAerptV tgaac XYNC_PSEFL : 120- 128: qgekn GstAerptV tgaac P 16: 12.0102 33( 14) G-x(4,5)-S-x-S Occurences: 33(14) CHIT_STRLI : 115- 122: sfgfn Gsgpg-SpS nckln CHIT_STRPL : 115- 122: sfgfn Gsgpg-SpS gckin GUN1_BUTFI : 484- 492: asrvd GwtlkiSkS evkid GUNA_CELFI : 245- 252: vyaip Grdcg-ShS gggvs GUNA_MICBI : 345- 352: sqsdp Gspsp-SpS qppag GUNA_MICBI : 409- 416: tqlwn Gdlst-SgS nvtvr GUNA_MICBI : 443- 450: gflgs Gtgql-SsS itcsa GUNA_PSEFL : 153- 161: pytgg GrgsyaShS rwsrp GUNA_PSEFL : 550- 558: ggpna GledsfSaS rlsgc GUNA_PSEFL : 606- 613: faatq Ggsss-SsS sssss GUNA_PSEFL : 606- 614: faatq GgssssSsS ssssv GUNA_PSEFL : 607- 614: aatqg Gssss-SsS ssssv GUNA_PSEFL : 607- 615: aatqg GsssssSsS sssvp GUNA_PSEFL : 687- 695: vttqs GwgwenSqS cisas GUNA_PSEFL : 710- 718: qpapy GivgaaSsS sqaan GUNA_PSEFL : 770- 778: wqvis GntvvaSgS sssas GUNA_STRLI : 77- 85: qrlvq GwnatwSqS gsavt GUNB_CELFI : 389- 396: inyal Gdnpr-SsS yvvgf GUNB_PSEFL : 165- 172: sssvp Gtsss-SsS svltg GUNB_PSEFL : 165- 173: sssvp GtssssSsS vltga GUNB_PSEFL : 220- 227: qpapy Givst-SsS tplss GUNC_PSEFL : 89- 96: npnls Gsnpy-SaS nlswn GUNC_PSEFL : 135- 142: gaact Ggtss-SvS sssvv GUNC_PSEFL : 136- 144: aactg GtsssvSsS svvss GUNC_PSEFL : 223- 230: qpapy Givgg-SsS pssis GUNC_PSEFL : 227- 235: ygivg GssspsSiS sssvr GUX_CELFI : 216- 223: dynve Ginak-SnS lydlv XYNA_PSEFL : 81- 88: nanvs Gsnpy-SaS nlswn XYNA_PSEFL : 121- 128: erpsv Ggsic-SgS vasss XYNA_PSEFL : 228- 236: givgs GsstpvSsS sssls XYNB_PSEFL : 279- 287: attae GlpnidSlS vvggt XYNB_PSEFL : 296- 304: gtvra GncgsvSsS ssvqs XYNB_PSEFL : 299- 306: ragnc Gsvss-SsS vqsss XYNC_PSEFL : 279- 287: attae GlpnidSlS vvggt XYNC_PSEFL : 296- 304: gtvra GncgsvSsS ssvqs XYNC_PSEFL : 299- 306: ragnc Gsvss-SsS vqsss Q 17: 12.0102 26( 14) A-x(3,4)-G-x(2)-A Occurences: 26(14) CHIT_STRLI : 456- 464: ydffg AwaknGptA phspl CHIT_STRPL : 457- 465: ydffg AwaknGptA phspl GUN1_BUTFI : 337- 345: ervkw AdyywGraA rysnv GUNA_CELFI : 15- 23: llaaa AvavgGltA lttta GUNA_CELFI : 206- 213: altpq Aywv-GnwA dasha GUNA_CELFI : 425- 432: gesdg Acng-GpaA gqwwq GUNA_MICBI : 13- 21: latal AaataGvgA ivtai GUNA_MICBI : 14- 21: atala Aata-GvgA ivtai GUNA_PSEFL : 225- 233: nlyer AqhitGnlA avadg GUNA_PSEFL : 542- 549: wappg Alsg-GpnA gleds GUNA_PSEFL : 922- 930: gnnpy AasalGwnA niqpg GUNA_PSEFL : 923- 930: nnpya Asal-GwnA niqpg GUNA_PSEFL : 930- 938: algwn AniqpGqtA efgfq GUNA_STRLI : 25- 33: lagpp AqaatGckA eytit GUNA_STRLI : 237- 244: glvdm Aedr-GmyA vidfh GUNB_CELFI : 25- 33: vgvlv AplatGaaA aptyn GUNB_CELFI : 559- 567: ysecg AqsgkGvsA ggtlg GUNB_CELFI : 770- 777: atlaw Apst-GdpA vsgyd GUNB_PSEFL : 362- 370: gssyn ApgdpGsaA lagkt GUNB_PSEFL : 420- 427: naelg Aqyg-GflA ackqq GUNC_PSEFL : 610- 617: aqtec Agle-GdeA aqarc GUX_CELFI : 153- 161: hvtkv AdhfeGkvA swdvv XYNA_PSEFL : 6- 13: mrtam Aksl-GaaA flgaa XYNA_PSEFL : 277- 285: fpigv AvaasGgnA difts XYNB_PSEFL : 500- 508: avglq AhelkGmtA aqvkt XYNC_PSEFL : 537- 545: pgqrp AwmahGplA dtean R 18: 12.0102 32( 14) T-x(2,3)-S-x-S Occurences: 32(14) CHIT_STRLI : 57- 63: wtvkn TgttSlS swtve CHIT_STRLI : 200- 205: gltkg Tay-SyS vkard CHIT_STRPL : 57- 63: wtvkn TgttSlS swtve CHIT_STRPL : 200- 205: gltkg Tdy-SyS vkard CHIT_STRPL : 215- 221: dtgdq TgpaSgS vkvtt GUN1_BUTFI : 486- 492: rvdgw TlkiSkS evkid GUNA_CELFI : 123- 128: agsnp Tpa-SfS lngtt GUNA_MICBI : 157- 163: alpim TncmSpS eqaev GUNA_MICBI : 334- 340: sptps TpspSpS qsdpg GUNA_MICBI : 444- 450: flgsg TgqlSsS itcsa GUNA_PSEFL : 446- 451: asthl Ttq-SaS gypap GUNA_PSEFL : 604- 610: ndfaa TqggSsS sssss GUNA_PSEFL : 772- 778: visgn TvvaSgS sssas GUNA_STRLI : 81- 87: qgwna TwsqSgS avtag GUNA_STRLI : 431- 436: gtceg Tdy-SsS gvlte GUNB_CELFI : 664- 670: atgvt TvgaSlS waast GUNB_PSEFL : 151- 156: svvss Tpr-SsS ssvss GUNB_PSEFL : 151- 157: svvss TprsSsS svsss GUNB_PSEFL : 166- 171: ssvpg Tss-SsS ssvlt GUNB_PSEFL : 166- 172: ssvpg TsssSsS svltg GUNB_PSEFL : 228- 233: stsss Tpl-SsS sssrs GUNB_PSEFL : 228- 234: stsss TplsSsS ssrss GUNB_PSEFL : 250- 255: slssa Tss-SaS svssv GUNC_PSEFL : 134- 140: ngaac TggtSsS vssss GUNC_PSEFL : 137- 142: actgg Tss-SvS sssvv GUX_CELFI : 431- 437: qawss TvtqSgS avtvr XYNA_PSEFL : 68- 74: nwqya TnrlSsS wnanv XYNA_PSEFL : 174- 179: svass Tpg-SsS gnqqc XYNA_PSEFL : 231- 236: gsgss Tpv-SsS sssls XYNA_PSEFL : 231- 237: gsgss TpvsSsS sslss XYNB_PSEFL : 147- 153: assss TpttSsS sassv XYNB_PSEFL : 149- 154: ssstp Tts-SsS assva XYNB_PSEFL : 150- 156: sstpt TsssSaS svasa XYNC_PSEFL : 147- 153: assss TpttSsS sassv XYNC_PSEFL : 149- 154: ssstp Tts-SsS assva XYNC_PSEFL : 150- 156: sstpt TsssSaS svasa S 19: 12.0102 26( 14) A-x(0,1)-G-x(5)-A Occurences: 26(14) CHIT_STRLI : 546- 554: knscp AtGtiagtA yahcg CHIT_STRPL : 547- 555: knscp AtGtvagtA yahcg GUN1_BUTFI : 31- 39: atkvs AaGgtdrsA tqvvs GUN1_BUTFI : 32- 39: tkvsa A-GgtdrsA tqvvs GUNA_CELFI : 32- 40: taaqa ApGcrvdyA vtnqw GUNA_CELFI : 118- 125: fngsw A-GsnptpA sfsln GUNA_MICBI : 119- 127: cggps AgGapnhtA yrawi GUNA_MICBI : 136- 144: widei AaGlrnrpA viile GUNA_MICBI : 137- 144: ideia A-GlrnrpA viile GUNA_MICBI : 175- 182: asavg A-GkkfkaA ssqak GUNA_MICBI : 242- 250: ksvls AiGashlrA vidts GUNA_PSEFL : 167- 174: rwsrp A-GhlnqgA nkgdm GUNA_PSEFL : 948- 955: qgtkg A-GsrqvpA vtgsv GUNA_STRLI : 21- 28: gltal A-GppaqaA tgcka GUNB_CELFI : 11- 19: prtlv AgGsalavA vgvlv GUNB_CELFI : 260- 268: ywlyk AtGdatylA kaeae GUNB_CELFI : 465- 472: atdyn A-GftsalA rlvee GUNB_CELFI : 659- 667: pgtpv AtGvttvgA slswa GUNB_CELFI : 905- 912: atval A-GltpatA ysyvv GUNB_PSEFL : 362- 370: gssyn ApGdpgsaA lagkt GUNC_PSEFL : 610- 617: aqtec A-GlegdeA aqarc GUX_CELFI : 7- 15: prttp ApGhpargA rtalr GUX_CELFI : 52- 59: eaadg A-GrdfgfA ldpnr XYNA_PSEFL : 538- 545: cavsc A-GldrqkA rykei XYNB_PSEFL : 196- 204: antnn AqGaavvwA idats XYNC_PSEFL : 196- 204: antnn AqGaavvwA idats T 20: 12.0102 25( 14) G-x(2)-G-x(0,1)-S Occurences: 25(14) CHIT_STRLI : 47- 51: sdwgt GfgG-S wtvkn CHIT_STRLI : 112- 116: asvsf GfnG-S gpgsp CHIT_STRPL : 112- 116: asvsf GfnG-S gpgsp GUN1_BUTFI : 531- 535: asvdf GiqG-S gsigt GUN1_BUTFI : 536- 541: giqgs GsiGtS vnisv GUNA_CELFI : 112- 116: gtasf GfnG-S wagsn GUNA_MICBI : 260- 264: srngn GplG-S ewcdp GUNA_MICBI : 438- 442: gstsf GflG-S gtgql GUNA_PSEFL : 152- 156: tpytg GgrG-S yashs GUNA_PSEFL : 736- 741: sanat GfeGgS mvcct GUNA_STRLI : 109- 113: asadl GfvG-S ftgan GUNA_STRLI : 318- 323: avviv GtrGwS slgvs GUNB_CELFI : 438- 442: ygalv GgpG-S pnday GUNB_CELFI : 958- 962: nswnv GftG-S vkitn GUNB_CELFI : 1022- 1026: qstdi GfnG-S hpgtn GUNB_PSEFL : 110- 114: efgvq GnnG-S sraqv GUNB_PSEFL : 110- 115: efgvq GnnGsS raqvp GUNB_PSEFL : 128- 132: tgaic GgqG-S sapss GUNB_PSEFL : 128- 133: tgaic GgqGsS apssv GUNB_PSEFL : 364- 368: synap GdpG-S aalag GUNC_PSEFL : 223- 228: qpapy GivGgS sspss GUX_CELFI : 459- 463: gtaqf GfnG-S htgtn XYNA_PSEFL : 223- 227: qpapf GivG-S gsstp XYNB_PSEFL : 184- 188: dnnht GftG-S gfant XYNB_PSEFL : 296- 300: gtvra GncG-S vssss XYNC_PSEFL : 184- 188: dnnht GftG-S gfant XYNC_PSEFL : 296- 300: gtvra GncG-S vssss Number of patterns evaluated by Pratt:11136 Total running time: 18 seconds