------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 19 sequences from file CAT PATTERN CONSERVATION: CM: min Nr of Seqs to Match 19 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CAT.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CAT1_CLOPE 219 CAT1_STAAU 216 CAT2_CLOPE 207 CAT2_ECOLI 213 CAT2_HAEIN 213 CAT2_STAAU 215 CAT3_ECOLI 213 CAT3_STAAU 215 CAT4_STAAU 215 CAT5_STAAU 209 CAT_BACPU 220 CAT_CAMCO 207 CAT_CLOBU 218 CAT_CLODI 212 CAT_ECOLI 219 CAT_PROMI 217 CAT_STAIN 215 CAT_STRAC 220 CAT_STRAG 215 Pratt run started at Thu Feb 6 19:04:47 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 29.1904 19( 19) P-x(3)-Q-x-H-H-x(3)-D-G-x-H 2: 29.1904 19( 19) N-x(4)-S-x(2)-P-W-x(2)-F-x(2)-F-x-L 3: 25.0203 19( 19) Q-x-H-H-x(3)-D-G-x-H 4: 25.0203 19( 19) S-x(2)-P-W-x(2)-F-x(2)-F-x-L 5: 20.8503 19( 19) H-H-x(3)-D-G-x-H 6: 20.8503 19( 19) P-W-x(2)-F-x(2)-F-x-L 7: 16.6802 19( 19) H-x(3)-D-G-x-H 8: 16.6802 19( 19) W-x(2)-F-x(2)-F-x-L 9: 12.5102 19( 19) D-G-x-H 10: 12.5102 19( 19) F-x(2)-F-x-L 11: 12.0102 19( 19) F-x(1,2)-F-x-L 12: 12.0102 28( 19) F-x(4)-L-x(0,1)-N 13: 12.0102 24( 19) F-x(3,4)-L-N 14: 12.0102 27( 19) S-x(2,3)-W-x(2)-F 15: 11.5102 22( 19) F-x(1,3)-L-N 16: 11.5102 26( 19) F-x(2)-F-x(0,2)-N 17: 11.5102 29( 19) S-x(1,3)-W-x(2)-F 18: 11.5102 20( 19) F-x(0,1)-H-x(4,5)-T 19: 11.5102 24( 19) P-x(2,4)-T-x-F 20: 11.5102 27( 19) S-x(2,3)-P-x(3,4)-F Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 59.5360 19( 19) P-[FILMV]-[APS]-[ILV]-Q-[ILV]-H-H-[AS]-[AIV]-[AC]-D-G-[FY]-H-x-[ACGS]-x(3)-[DEN]-x(2)-[QR] B 2: 49.8485 19( 19) N-x-[FILV]-x-[ILV]-S-x(2)-P-W-x-[DNST]-F-[DEST]-[GS]-F-[DNT]-L-[DN]-[ILMV] C 3: 48.0434 19( 19) Q-[ILV]-H-H-[AS]-[AIV]-[AC]-D-G-[FY]-H-x-[ACGS]-x(3)-[DEN]-x(2)-[QR] D 4: 41.2115 19( 19) H-H-[AS]-[AIV]-[AC]-D-G-[FY]-H-x-[ACGS]-x(3)-[DEN]-x(2)-[QR] E 5: 40.7602 19( 19) S-x(2)-P-W-x-[DNST]-F-[DEST]-[GS]-F-[DNT]-L-[DN]-[ILMV] F 6: 37.0415 19( 19) H-[AS]-[AIV]-[AC]-D-G-[FY]-H-x-[ACGS]-x(3)-[DEN]-x(2)-[QR] G 7: 36.5901 19( 19) P-W-x-[DNST]-F-[DEST]-[GS]-F-[DNT]-L-[DN]-[ILMV] H 8: 36.0901 25( 19) S-x(2,3)-W-x-[DNST]-F-[DEST]-[GS]-F-[DNT]-L-[DN]-[ILMV] I 9: 35.5901 25( 19) S-x(1,3)-W-x-[DNST]-F-[DEST]-[GS]-F-[DNT]-L-[DN]-[ILMV] J 10: 34.3892 19( 19) S-x(2)-P-x(3)-F-[DEST]-[GS]-F-[DNT]-L-[DN]-[ILMV] K 11: 32.4201 19( 19) W-x-[DNST]-F-[DEST]-[GS]-F-[DNT]-L-[DN]-[ILMV] L 12: 23.7089 19( 19) D-G-[FY]-H-x-[ACGS]-x(3)-[DEN]-x(2)-[QR] M 13: 20.6808 19( 19) F-x(2)-F-[DNT]-L-[DN]-[ILMV] N 14: 20.1808 19( 19) F-x(1,2)-F-[DNT]-L-[DN]-[ILMV] O 15: 19.8285 20( 19) P-x(2,4)-T-x-F-x(2)-[DENQ]-x-[AENS]-x(2)-[ADENST]-[ACNS] P 16: 17.6390 19( 19) F-[DEPST]-[GSV]-F-x(0,2)-N-x-[AEGNQT] Q 17: 17.2048 19( 19) F-x-[GST]-x-[DNR]-L-x(0,1)-N R 18: 12.0102 24( 19) F-x(3,4)-L-N S 19: 11.5102 22( 19) F-x(1,3)-L-N T 20: 11.5102 29( 19) S-x(1,3)-W-x(2)-F Best patterns with alignements: fitness hits(seqs) Pattern A 1: 59.5360 19( 19) P-[FILMV]-[APS]-[ILV]-Q-[ILV]-H-H-[AS]-[AIV]-[AC]-D-G-[FY]-H-x-[ACGS]-x(3)-[DEN]-x(2)-[QR] Occurences: 19(19) CAT1_CLOPE : 183- 206: nkill PMSVQVHHAVCDGYHiSrffNeaQ elasn CAT1_STAAU : 182- 205: nsiyl PLSLQVHHSVCDGYHaGlfmNsiQ elsdr CAT2_CLOPE : 179- 202: nkiil PLAIQVHHAVCDGFHiCrfvNelQ elins CAT2_ECOLI : 182- 205: drvll PVSVQVHHAVCDGFHaArfiNtlQ lmcdn CAT2_HAEIN : 182- 205: nrvll PVSVQVHHAVCDGFHaArfiNtlQ mmcdn CAT2_STAAU : 182- 205: nkiyi PVALQLHHAVCDGYHaSlfmNefQ diihk CAT3_ECOLI : 182- 205: drlll PLSVQVHHAVCDGFHvArfiNrlQ elcns CAT3_STAAU : 182- 205: nkiyi PVALQLHHAVCDGYHaSlfiNefQ diink CAT4_STAAU : 182- 205: nkiyi PVALQLHHAVCDGYHaSlfiNefQ diikk CAT5_STAAU : 182- 205: dkiyl PFPLQVHHAVCDGYHvSlfmNefQ niir CAT_BACPU : 180- 203: gkiil PVAIQVHHAVCDGYHaGqyvEylR wlieh CAT_CAMCO : 179- 202: gkyyi PLSIQVHHAVCDGFHvCrflDelQ dllnk CAT_CLOBU : 183- 206: nkifi PISIQVHHAICDGYHaSrfiNemQ elafs CAT_CLODI : 179- 202: nkiil PLAIQVHHAVCDGFHiCrfvNelQ eliiv CAT_ECOLI : 186- 209: dkvlm PLAIQVHHAVCDGFHvGrmlNelQ qycde CAT_PROMI : 186- 209: dkvlm PLAIQVHHAVCDGFHvGrllNeiQ qycde CAT_STAIN : 182- 205: nkiyi PVALQLHHAVCDGYHaSlfiNefQ diikk CAT_STRAC : 188- 211: trlll PLSVQIHHAAADGFHtArltNelQ tllad CAT_STRAG : 182- 205: nkiyi PVALQLHHSVCDGYHaSlfmNefQ diihr B 2: 49.8485 19( 19) N-x-[FILV]-x-[ILV]-S-x(2)-P-W-x-[DNST]-F-[DEST]-[GS]-F-[DNT]-L-[DN]-[ILMV] Occurences: 19(19) CAT1_CLOPE : 138- 157: tgepa NtInVSsiPWvNFTGFNLNI yndat CAT1_STAAU : 137- 156: tpipe NaFsLSiiPWtSFTGFNLNI nnnsn CAT2_CLOPE : 134- 153: pnape NiFnVSmiPWsTFDGFNLNL qkgyd CAT2_ECOLI : 137- 156: gnlpe NhLnISslPWvSFDGFNLNI tgndd CAT2_HAEIN : 137- 156: galpe NhLnISslPWvSFDGFNLNI tgndd CAT2_STAAU : 137- 156: kpipe NtIpISmiPWiDFSSFNLNI gnnsn CAT3_ECOLI : 137- 156: gvtpe NhLnISalPWvNFDSFNLNV anftd CAT3_STAAU : 137- 156: kpipe NtIpISmiPWiDFSSFNLNI gnnss CAT4_STAAU : 137- 156: kpipe NtLpISmiPWiDFSSFNLNI gnnsn CAT5_STAAU : 137- 156: kpipe NtVpISmiPWiDFSSFNLNI gnnsr CAT_BACPU : 135- 154: phmpe NmFnISslPWiDFTSFNLNV stdea CAT_CAMCO : 134- 153: pnppe NtFpVSmiPWtSFEGFNLNL kkgyd CAT_CLOBU : 138- 157: snepd NtFsVSsiPWvSFTGFNLNV ynegt CAT_CLODI : 134- 153: pnape NiFnVSmiPWsTFDGFNLNL qkgyd CAT_ECOLI : 141- 160: kgfie NmFfVSanPWvSFTSFDLNV anmdn CAT_PROMI : 141- 160: kefie NmFfVSanPWvSFTSFNLNM aninn CAT_STAIN : 137- 156: kpipe NtIpISmiPWiDFSSFNLNI gnnss CAT_STRAC : 143- 162: gnppp NaFdVSslPWvSFTGFTLDI rdgwd CAT_STRAG : 137- 156: kpipe NtIpISmiPWiDFSSFNLNI gnnss C 3: 48.0434 19( 19) Q-[ILV]-H-H-[AS]-[AIV]-[AC]-D-G-[FY]-H-x-[ACGS]-x(3)-[DEN]-x(2)-[QR] Occurences: 19(19) CAT1_CLOPE : 187- 206: lpmsv QVHHAVCDGYHiSrffNeaQ elasn CAT1_STAAU : 186- 205: lplsl QVHHSVCDGYHaGlfmNsiQ elsdr CAT2_CLOPE : 183- 202: lplai QVHHAVCDGFHiCrfvNelQ elins CAT2_ECOLI : 186- 205: lpvsv QVHHAVCDGFHaArfiNtlQ lmcdn CAT2_HAEIN : 186- 205: lpvsv QVHHAVCDGFHaArfiNtlQ mmcdn CAT2_STAAU : 186- 205: ipval QLHHAVCDGYHaSlfmNefQ diihk CAT3_ECOLI : 186- 205: lplsv QVHHAVCDGFHvArfiNrlQ elcns CAT3_STAAU : 186- 205: ipval QLHHAVCDGYHaSlfiNefQ diink CAT4_STAAU : 186- 205: ipval QLHHAVCDGYHaSlfiNefQ diikk CAT5_STAAU : 186- 205: lpfpl QVHHAVCDGYHvSlfmNefQ niir CAT_BACPU : 184- 203: lpvai QVHHAVCDGYHaGqyvEylR wlieh CAT_CAMCO : 183- 202: iplsi QVHHAVCDGFHvCrflDelQ dllnk CAT_CLOBU : 187- 206: ipisi QVHHAICDGYHaSrfiNemQ elafs CAT_CLODI : 183- 202: lplai QVHHAVCDGFHiCrfvNelQ eliiv CAT_ECOLI : 190- 209: mplai QVHHAVCDGFHvGrmlNelQ qycde CAT_PROMI : 190- 209: mplai QVHHAVCDGFHvGrllNeiQ qycde CAT_STAIN : 186- 205: ipval QLHHAVCDGYHaSlfiNefQ diikk CAT_STRAC : 192- 211: lplsv QIHHAAADGFHtArltNelQ tllad CAT_STRAG : 186- 205: ipval QLHHSVCDGYHaSlfmNefQ diihr D 4: 41.2115 19( 19) H-H-[AS]-[AIV]-[AC]-D-G-[FY]-H-x-[ACGS]-x(3)-[DEN]-x(2)-[QR] Occurences: 19(19) CAT1_CLOPE : 189- 206: msvqv HHAVCDGYHiSrffNeaQ elasn CAT1_STAAU : 188- 205: lslqv HHSVCDGYHaGlfmNsiQ elsdr CAT2_CLOPE : 185- 202: laiqv HHAVCDGFHiCrfvNelQ elins CAT2_ECOLI : 188- 205: vsvqv HHAVCDGFHaArfiNtlQ lmcdn CAT2_HAEIN : 188- 205: vsvqv HHAVCDGFHaArfiNtlQ mmcdn CAT2_STAAU : 188- 205: valql HHAVCDGYHaSlfmNefQ diihk CAT3_ECOLI : 188- 205: lsvqv HHAVCDGFHvArfiNrlQ elcns CAT3_STAAU : 188- 205: valql HHAVCDGYHaSlfiNefQ diink CAT4_STAAU : 188- 205: valql HHAVCDGYHaSlfiNefQ diikk CAT5_STAAU : 188- 205: fplqv HHAVCDGYHvSlfmNefQ niir CAT_BACPU : 186- 203: vaiqv HHAVCDGYHaGqyvEylR wlieh CAT_CAMCO : 185- 202: lsiqv HHAVCDGFHvCrflDelQ dllnk CAT_CLOBU : 189- 206: isiqv HHAICDGYHaSrfiNemQ elafs CAT_CLODI : 185- 202: laiqv HHAVCDGFHiCrfvNelQ eliiv CAT_ECOLI : 192- 209: laiqv HHAVCDGFHvGrmlNelQ qycde CAT_PROMI : 192- 209: laiqv HHAVCDGFHvGrllNeiQ qycde CAT_STAIN : 188- 205: valql HHAVCDGYHaSlfiNefQ diikk CAT_STRAC : 194- 211: lsvqi HHAAADGFHtArltNelQ tllad CAT_STRAG : 188- 205: valql HHSVCDGYHaSlfmNefQ diihr E 5: 40.7602 19( 19) S-x(2)-P-W-x-[DNST]-F-[DEST]-[GS]-F-[DNT]-L-[DN]-[ILMV] Occurences: 19(19) CAT1_CLOPE : 143- 157: ntinv SsiPWvNFTGFNLNI yndat CAT1_STAAU : 142- 156: nafsl SiiPWtSFTGFNLNI nnnsn CAT2_CLOPE : 139- 153: nifnv SmiPWsTFDGFNLNL qkgyd CAT2_ECOLI : 142- 156: nhlni SslPWvSFDGFNLNI tgndd CAT2_HAEIN : 142- 156: nhlni SslPWvSFDGFNLNI tgndd CAT2_STAAU : 142- 156: ntipi SmiPWiDFSSFNLNI gnnsn CAT3_ECOLI : 142- 156: nhlni SalPWvNFDSFNLNV anftd CAT3_STAAU : 142- 156: ntipi SmiPWiDFSSFNLNI gnnss CAT4_STAAU : 142- 156: ntlpi SmiPWiDFSSFNLNI gnnsn CAT5_STAAU : 142- 156: ntvpi SmiPWiDFSSFNLNI gnnsr CAT_BACPU : 140- 154: nmfni SslPWiDFTSFNLNV stdea CAT_CAMCO : 139- 153: ntfpv SmiPWtSFEGFNLNL kkgyd CAT_CLOBU : 143- 157: ntfsv SsiPWvSFTGFNLNV ynegt CAT_CLODI : 139- 153: nifnv SmiPWsTFDGFNLNL qkgyd CAT_ECOLI : 146- 160: nmffv SanPWvSFTSFDLNV anmdn CAT_PROMI : 146- 160: nmffv SanPWvSFTSFNLNM aninn CAT_STAIN : 142- 156: ntipi SmiPWiDFSSFNLNI gnnss CAT_STRAC : 148- 162: nafdv SslPWvSFTGFTLDI rdgwd CAT_STRAG : 142- 156: ntipi SmiPWiDFSSFNLNI gnnss F 6: 37.0415 19( 19) H-[AS]-[AIV]-[AC]-D-G-[FY]-H-x-[ACGS]-x(3)-[DEN]-x(2)-[QR] Occurences: 19(19) CAT1_CLOPE : 190- 206: svqvh HAVCDGYHiSrffNeaQ elasn CAT1_STAAU : 189- 205: slqvh HSVCDGYHaGlfmNsiQ elsdr CAT2_CLOPE : 186- 202: aiqvh HAVCDGFHiCrfvNelQ elins CAT2_ECOLI : 189- 205: svqvh HAVCDGFHaArfiNtlQ lmcdn CAT2_HAEIN : 189- 205: svqvh HAVCDGFHaArfiNtlQ mmcdn CAT2_STAAU : 189- 205: alqlh HAVCDGYHaSlfmNefQ diihk CAT3_ECOLI : 189- 205: svqvh HAVCDGFHvArfiNrlQ elcns CAT3_STAAU : 189- 205: alqlh HAVCDGYHaSlfiNefQ diink CAT4_STAAU : 189- 205: alqlh HAVCDGYHaSlfiNefQ diikk CAT5_STAAU : 189- 205: plqvh HAVCDGYHvSlfmNefQ niir CAT_BACPU : 187- 203: aiqvh HAVCDGYHaGqyvEylR wlieh CAT_CAMCO : 186- 202: siqvh HAVCDGFHvCrflDelQ dllnk CAT_CLOBU : 190- 206: siqvh HAICDGYHaSrfiNemQ elafs CAT_CLODI : 186- 202: aiqvh HAVCDGFHiCrfvNelQ eliiv CAT_ECOLI : 193- 209: aiqvh HAVCDGFHvGrmlNelQ qycde CAT_PROMI : 193- 209: aiqvh HAVCDGFHvGrllNeiQ qycde CAT_STAIN : 189- 205: alqlh HAVCDGYHaSlfiNefQ diikk CAT_STRAC : 195- 211: svqih HAAADGFHtArltNelQ tllad CAT_STRAG : 189- 205: alqlh HSVCDGYHaSlfmNefQ diihr G 7: 36.5901 19( 19) P-W-x-[DNST]-F-[DEST]-[GS]-F-[DNT]-L-[DN]-[ILMV] Occurences: 19(19) CAT1_CLOPE : 146- 157: nvssi PWvNFTGFNLNI yndat CAT1_STAAU : 145- 156: slsii PWtSFTGFNLNI nnnsn CAT2_CLOPE : 142- 153: nvsmi PWsTFDGFNLNL qkgyd CAT2_ECOLI : 145- 156: nissl PWvSFDGFNLNI tgndd CAT2_HAEIN : 145- 156: nissl PWvSFDGFNLNI tgndd CAT2_STAAU : 145- 156: pismi PWiDFSSFNLNI gnnsn CAT3_ECOLI : 145- 156: nisal PWvNFDSFNLNV anftd CAT3_STAAU : 145- 156: pismi PWiDFSSFNLNI gnnss CAT4_STAAU : 145- 156: pismi PWiDFSSFNLNI gnnsn CAT5_STAAU : 145- 156: pismi PWiDFSSFNLNI gnnsr CAT_BACPU : 143- 154: nissl PWiDFTSFNLNV stdea CAT_CAMCO : 142- 153: pvsmi PWtSFEGFNLNL kkgyd CAT_CLOBU : 146- 157: svssi PWvSFTGFNLNV ynegt CAT_CLODI : 142- 153: nvsmi PWsTFDGFNLNL qkgyd CAT_ECOLI : 149- 160: fvsan PWvSFTSFDLNV anmdn CAT_PROMI : 149- 160: fvsan PWvSFTSFNLNM aninn CAT_STAIN : 145- 156: pismi PWiDFSSFNLNI gnnss CAT_STRAC : 151- 162: dvssl PWvSFTGFTLDI rdgwd CAT_STRAG : 145- 156: pismi PWiDFSSFNLNI gnnss H 8: 36.0901 25( 19) S-x(2,3)-W-x-[DNST]-F-[DEST]-[GS]-F-[DNT]-L-[DN]-[ILMV] Occurences: 25(19) CAT1_CLOPE : 143- 157: ntinv SsipWvNFTGFNLNI yndat CAT1_CLOPE : 144- 157: tinvs Sip-WvNFTGFNLNI yndat CAT1_STAAU : 142- 156: nafsl SiipWtSFTGFNLNI nnnsn CAT2_CLOPE : 139- 153: nifnv SmipWsTFDGFNLNL qkgyd CAT2_ECOLI : 142- 156: nhlni SslpWvSFDGFNLNI tgndd CAT2_ECOLI : 143- 156: hlnis Slp-WvSFDGFNLNI tgndd CAT2_HAEIN : 142- 156: nhlni SslpWvSFDGFNLNI tgndd CAT2_HAEIN : 143- 156: hlnis Slp-WvSFDGFNLNI tgndd CAT2_STAAU : 142- 156: ntipi SmipWiDFSSFNLNI gnnsn CAT3_ECOLI : 142- 156: nhlni SalpWvNFDSFNLNV anftd CAT3_STAAU : 142- 156: ntipi SmipWiDFSSFNLNI gnnss CAT4_STAAU : 142- 156: ntlpi SmipWiDFSSFNLNI gnnsn CAT5_STAAU : 142- 156: ntvpi SmipWiDFSSFNLNI gnnsr CAT_BACPU : 140- 154: nmfni SslpWiDFTSFNLNV stdea CAT_BACPU : 141- 154: mfnis Slp-WiDFTSFNLNV stdea CAT_CAMCO : 139- 153: ntfpv SmipWtSFEGFNLNL kkgyd CAT_CLOBU : 143- 157: ntfsv SsipWvSFTGFNLNV ynegt CAT_CLOBU : 144- 157: tfsvs Sip-WvSFTGFNLNV ynegt CAT_CLODI : 139- 153: nifnv SmipWsTFDGFNLNL qkgyd CAT_ECOLI : 146- 160: nmffv SanpWvSFTSFDLNV anmdn CAT_PROMI : 146- 160: nmffv SanpWvSFTSFNLNM aninn CAT_STAIN : 142- 156: ntipi SmipWiDFSSFNLNI gnnss CAT_STRAC : 148- 162: nafdv SslpWvSFTGFTLDI rdgwd CAT_STRAC : 149- 162: afdvs Slp-WvSFTGFTLDI rdgwd CAT_STRAG : 142- 156: ntipi SmipWiDFSSFNLNI gnnss I 9: 35.5901 25( 19) S-x(1,3)-W-x-[DNST]-F-[DEST]-[GS]-F-[DNT]-L-[DN]-[ILMV] Occurences: 25(19) CAT1_CLOPE : 143- 157: ntinv SsipWvNFTGFNLNI yndat CAT1_CLOPE : 144- 157: tinvs Sip-WvNFTGFNLNI yndat CAT1_STAAU : 142- 156: nafsl SiipWtSFTGFNLNI nnnsn CAT2_CLOPE : 139- 153: nifnv SmipWsTFDGFNLNL qkgyd CAT2_ECOLI : 142- 156: nhlni SslpWvSFDGFNLNI tgndd CAT2_ECOLI : 143- 156: hlnis Slp-WvSFDGFNLNI tgndd CAT2_HAEIN : 142- 156: nhlni SslpWvSFDGFNLNI tgndd CAT2_HAEIN : 143- 156: hlnis Slp-WvSFDGFNLNI tgndd CAT2_STAAU : 142- 156: ntipi SmipWiDFSSFNLNI gnnsn CAT3_ECOLI : 142- 156: nhlni SalpWvNFDSFNLNV anftd CAT3_STAAU : 142- 156: ntipi SmipWiDFSSFNLNI gnnss CAT4_STAAU : 142- 156: ntlpi SmipWiDFSSFNLNI gnnsn CAT5_STAAU : 142- 156: ntvpi SmipWiDFSSFNLNI gnnsr CAT_BACPU : 140- 154: nmfni SslpWiDFTSFNLNV stdea CAT_BACPU : 141- 154: mfnis Slp-WiDFTSFNLNV stdea CAT_CAMCO : 139- 153: ntfpv SmipWtSFEGFNLNL kkgyd CAT_CLOBU : 143- 157: ntfsv SsipWvSFTGFNLNV ynegt CAT_CLOBU : 144- 157: tfsvs Sip-WvSFTGFNLNV ynegt CAT_CLODI : 139- 153: nifnv SmipWsTFDGFNLNL qkgyd CAT_ECOLI : 146- 160: nmffv SanpWvSFTSFDLNV anmdn CAT_PROMI : 146- 160: nmffv SanpWvSFTSFNLNM aninn CAT_STAIN : 142- 156: ntipi SmipWiDFSSFNLNI gnnss CAT_STRAC : 148- 162: nafdv SslpWvSFTGFTLDI rdgwd CAT_STRAC : 149- 162: afdvs Slp-WvSFTGFTLDI rdgwd CAT_STRAG : 142- 156: ntipi SmipWiDFSSFNLNI gnnss J 10: 34.3892 19( 19) S-x(2)-P-x(3)-F-[DEST]-[GS]-F-[DNT]-L-[DN]-[ILMV] Occurences: 19(19) CAT1_CLOPE : 143- 157: ntinv SsiPwvnFTGFNLNI yndat CAT1_STAAU : 142- 156: nafsl SiiPwtsFTGFNLNI nnnsn CAT2_CLOPE : 139- 153: nifnv SmiPwstFDGFNLNL qkgyd CAT2_ECOLI : 142- 156: nhlni SslPwvsFDGFNLNI tgndd CAT2_HAEIN : 142- 156: nhlni SslPwvsFDGFNLNI tgndd CAT2_STAAU : 142- 156: ntipi SmiPwidFSSFNLNI gnnsn CAT3_ECOLI : 142- 156: nhlni SalPwvnFDSFNLNV anftd CAT3_STAAU : 142- 156: ntipi SmiPwidFSSFNLNI gnnss CAT4_STAAU : 142- 156: ntlpi SmiPwidFSSFNLNI gnnsn CAT5_STAAU : 142- 156: ntvpi SmiPwidFSSFNLNI gnnsr CAT_BACPU : 140- 154: nmfni SslPwidFTSFNLNV stdea CAT_CAMCO : 139- 153: ntfpv SmiPwtsFEGFNLNL kkgyd CAT_CLOBU : 143- 157: ntfsv SsiPwvsFTGFNLNV ynegt CAT_CLODI : 139- 153: nifnv SmiPwstFDGFNLNL qkgyd CAT_ECOLI : 146- 160: nmffv SanPwvsFTSFDLNV anmdn CAT_PROMI : 146- 160: nmffv SanPwvsFTSFNLNM aninn CAT_STAIN : 142- 156: ntipi SmiPwidFSSFNLNI gnnss CAT_STRAC : 148- 162: nafdv SslPwvsFTGFTLDI rdgwd CAT_STRAG : 142- 156: ntipi SmiPwidFSSFNLNI gnnss K 11: 32.4201 19( 19) W-x-[DNST]-F-[DEST]-[GS]-F-[DNT]-L-[DN]-[ILMV] Occurences: 19(19) CAT1_CLOPE : 147- 157: vssip WvNFTGFNLNI yndat CAT1_STAAU : 146- 156: lsiip WtSFTGFNLNI nnnsn CAT2_CLOPE : 143- 153: vsmip WsTFDGFNLNL qkgyd CAT2_ECOLI : 146- 156: isslp WvSFDGFNLNI tgndd CAT2_HAEIN : 146- 156: isslp WvSFDGFNLNI tgndd CAT2_STAAU : 146- 156: ismip WiDFSSFNLNI gnnsn CAT3_ECOLI : 146- 156: isalp WvNFDSFNLNV anftd CAT3_STAAU : 146- 156: ismip WiDFSSFNLNI gnnss CAT4_STAAU : 146- 156: ismip WiDFSSFNLNI gnnsn CAT5_STAAU : 146- 156: ismip WiDFSSFNLNI gnnsr CAT_BACPU : 144- 154: isslp WiDFTSFNLNV stdea CAT_CAMCO : 143- 153: vsmip WtSFEGFNLNL kkgyd CAT_CLOBU : 147- 157: vssip WvSFTGFNLNV ynegt CAT_CLODI : 143- 153: vsmip WsTFDGFNLNL qkgyd CAT_ECOLI : 150- 160: vsanp WvSFTSFDLNV anmdn CAT_PROMI : 150- 160: vsanp WvSFTSFNLNM aninn CAT_STAIN : 146- 156: ismip WiDFSSFNLNI gnnss CAT_STRAC : 152- 162: vsslp WvSFTGFTLDI rdgwd CAT_STRAG : 146- 156: ismip WiDFSSFNLNI gnnss L 12: 23.7089 19( 19) D-G-[FY]-H-x-[ACGS]-x(3)-[DEN]-x(2)-[QR] Occurences: 19(19) CAT1_CLOPE : 194- 206: hhavc DGYHiSrffNeaQ elasn CAT1_STAAU : 193- 205: hhsvc DGYHaGlfmNsiQ elsdr CAT2_CLOPE : 190- 202: hhavc DGFHiCrfvNelQ elins CAT2_ECOLI : 193- 205: hhavc DGFHaArfiNtlQ lmcdn CAT2_HAEIN : 193- 205: hhavc DGFHaArfiNtlQ mmcdn CAT2_STAAU : 193- 205: hhavc DGYHaSlfmNefQ diihk CAT3_ECOLI : 193- 205: hhavc DGFHvArfiNrlQ elcns CAT3_STAAU : 193- 205: hhavc DGYHaSlfiNefQ diink CAT4_STAAU : 193- 205: hhavc DGYHaSlfiNefQ diikk CAT5_STAAU : 193- 205: hhavc DGYHvSlfmNefQ niir CAT_BACPU : 191- 203: hhavc DGYHaGqyvEylR wlieh CAT_CAMCO : 190- 202: hhavc DGFHvCrflDelQ dllnk CAT_CLOBU : 194- 206: hhaic DGYHaSrfiNemQ elafs CAT_CLODI : 190- 202: hhavc DGFHiCrfvNelQ eliiv CAT_ECOLI : 197- 209: hhavc DGFHvGrmlNelQ qycde CAT_PROMI : 197- 209: hhavc DGFHvGrllNeiQ qycde CAT_STAIN : 193- 205: hhavc DGYHaSlfiNefQ diikk CAT_STRAC : 199- 211: hhaaa DGFHtArltNelQ tllad CAT_STRAG : 193- 205: hhsvc DGYHaSlfmNefQ diihr M 13: 20.6808 19( 19) F-x(2)-F-[DNT]-L-[DN]-[ILMV] Occurences: 19(19) CAT1_CLOPE : 150- 157: ipwvn FtgFNLNI yndat CAT1_STAAU : 149- 156: ipwts FtgFNLNI nnnsn CAT2_CLOPE : 146- 153: ipwst FdgFNLNL qkgyd CAT2_ECOLI : 149- 156: lpwvs FdgFNLNI tgndd CAT2_HAEIN : 149- 156: lpwvs FdgFNLNI tgndd CAT2_STAAU : 149- 156: ipwid FssFNLNI gnnsn CAT3_ECOLI : 149- 156: lpwvn FdsFNLNV anftd CAT3_STAAU : 149- 156: ipwid FssFNLNI gnnss CAT4_STAAU : 149- 156: ipwid FssFNLNI gnnsn CAT5_STAAU : 149- 156: ipwid FssFNLNI gnnsr CAT_BACPU : 147- 154: lpwid FtsFNLNV stdea CAT_CAMCO : 146- 153: ipwts FegFNLNL kkgyd CAT_CLOBU : 150- 157: ipwvs FtgFNLNV ynegt CAT_CLODI : 146- 153: ipwst FdgFNLNL qkgyd CAT_ECOLI : 153- 160: npwvs FtsFDLNV anmdn CAT_PROMI : 153- 160: npwvs FtsFNLNM aninn CAT_STAIN : 149- 156: ipwid FssFNLNI gnnss CAT_STRAC : 155- 162: lpwvs FtgFTLDI rdgwd CAT_STRAG : 149- 156: ipwid FssFNLNI gnnss N 14: 20.1808 19( 19) F-x(1,2)-F-[DNT]-L-[DN]-[ILMV] Occurences: 19(19) CAT1_CLOPE : 150- 157: ipwvn FtgFNLNI yndat CAT1_STAAU : 149- 156: ipwts FtgFNLNI nnnsn CAT2_CLOPE : 146- 153: ipwst FdgFNLNL qkgyd CAT2_ECOLI : 149- 156: lpwvs FdgFNLNI tgndd CAT2_HAEIN : 149- 156: lpwvs FdgFNLNI tgndd CAT2_STAAU : 149- 156: ipwid FssFNLNI gnnsn CAT3_ECOLI : 149- 156: lpwvn FdsFNLNV anftd CAT3_STAAU : 149- 156: ipwid FssFNLNI gnnss CAT4_STAAU : 149- 156: ipwid FssFNLNI gnnsn CAT5_STAAU : 149- 156: ipwid FssFNLNI gnnsr CAT_BACPU : 147- 154: lpwid FtsFNLNV stdea CAT_CAMCO : 146- 153: ipwts FegFNLNL kkgyd CAT_CLOBU : 150- 157: ipwvs FtgFNLNV ynegt CAT_CLODI : 146- 153: ipwst FdgFNLNL qkgyd CAT_ECOLI : 153- 160: npwvs FtsFDLNV anmdn CAT_PROMI : 153- 160: npwvs FtsFNLNM aninn CAT_STAIN : 149- 156: ipwid FssFNLNI gnnss CAT_STRAC : 155- 162: lpwvs FtgFTLDI rdgwd CAT_STRAG : 149- 156: ipwid FssFNLNI gnnss O 15: 19.8285 20( 19) P-x(2,4)-T-x-F-x(2)-[DENQ]-x-[AENS]-x(2)-[ADENST]-[ACNS] Occurences: 20(19) CAT1_CLOPE : 86- 100: wdsmn Psy--TvFhkDnEtfSS iwtey CAT1_STAAU : 145- 161: slsii PwtsfTgFnlNiNnnSN yllpi CAT2_CLOPE : 82- 96: ydemi Psy--TiFhnDtEtfSS lwtec CAT2_ECOLI : 85- 99: wdqsd Pvf--TvFhkEtEtfSA lscry CAT2_HAEIN : 85- 99: wdqtd Pvf--TvFhkEtEtfSA lfcry CAT2_STAAU : 85- 99: wdkln Ply--TvFnkQtEkfTN iwtes CAT3_ECOLI : 85- 99: wdsvd Pqf--TvFhqEtEtfSA lscpy CAT3_STAAU : 85- 99: wdkln Ply--TvFnkQtEkfTN iwtes CAT4_STAAU : 85- 99: wdkln Ply--TvFnkQtEkfTN iwtes CAT5_STAAU : 85- 99: wdkle Ply--TvFnkEtEnfSN iwtes CAT_BACPU : 143- 159: nissl PwidfTsFnlNvStdEA yllpi CAT_CAMCO : 82- 96: fseml Pcy--TvFhkEtEtfSS iwtef CAT_CLOBU : 86- 100: wdsmn Psy--TiFhkEnEtfSS iwtey CAT_CLODI : 82- 96: ydemi Psy--TiFhnDtEtfSS lwtec CAT_ECOLI : 90- 104: wdsvh Pcy--TvFheQtEtfSS lwsey CAT_ECOLI : 149- 165: fvsan PwvsfTsFdlNvAnmDN ffapv CAT_PROMI : 149- 165: fvsan PwvsfTsFnlNmAniNN ffapv CAT_STAIN : 85- 99: wdkln Ply--TvFnkQtEkfTN iwtes CAT_STRAC : 91- 105: wpvvh Paf--TvFnpErEtfAC lwapy CAT_STRAG : 85- 99: wdkln Ply--TvFnkQtEkfTN iwtes P 16: 17.6390 19( 19) F-[DEPST]-[GSV]-F-x(0,2)-N-x-[AEGNQT] Occurences: 19(19) CAT1_CLOPE : 150- 156: ipwvn FTGF--NlN iynda CAT1_STAAU : 149- 155: ipwts FTGF--NlN innns CAT1_STAAU : 149- 157: ipwts FTGFnlNiN nnsny CAT2_CLOPE : 146- 152: ipwst FDGF--NlN lqkgy CAT2_CLOPE : 146- 154: ipwst FDGFnlNlQ kgydy CAT2_ECOLI : 149- 155: lpwvs FDGF--NlN itgnd CAT2_ECOLI : 149- 157: lpwvs FDGFnlNiT gnddy CAT2_HAEIN : 149- 155: lpwvs FDGF--NlN itgnd CAT2_HAEIN : 149- 157: lpwvs FDGFnlNiT gnddy CAT2_STAAU : 149- 155: ipwid FSSF--NlN ignns CAT2_STAAU : 149- 157: ipwid FSSFnlNiG nnsnf CAT3_ECOLI : 149- 155: lpwvn FDSF--NlN vanft CAT3_ECOLI : 149- 157: lpwvn FDSFnlNvA nftdy CAT3_STAAU : 149- 155: ipwid FSSF--NlN ignns CAT3_STAAU : 149- 157: ipwid FSSFnlNiG nnssf CAT4_STAAU : 149- 155: ipwid FSSF--NlN ignns CAT4_STAAU : 149- 157: ipwid FSSFnlNiG nnsnf CAT5_STAAU : 149- 155: ipwid FSSF--NlN ignns CAT5_STAAU : 149- 157: ipwid FSSFnlNiG nnsrf CAT_BACPU : 147- 153: lpwid FTSF--NlN vstde CAT_CAMCO : 146- 152: ipwts FEGF--NlN lkkgy CAT_CLOBU : 150- 156: ipwvs FTGF--NlN vyneg CAT_CLODI : 146- 152: ipwst FDGF--NlN lqkgy CAT_CLODI : 146- 154: ipwst FDGFnlNlQ kgydy CAT_ECOLI : 153- 161: npwvs FTSFdlNvA nmdnf CAT_PROMI : 153- 159: npwvs FTSF--NlN manin CAT_PROMI : 153- 161: npwvs FTSFnlNmA ninnf CAT_STAIN : 149- 155: ipwid FSSF--NlN ignns CAT_STAIN : 149- 157: ipwid FSSFnlNiG nnssf CAT_STRAC : 93- 99: vvhpa FTVF--NpE retfa CAT_STRAG : 149- 155: ipwid FSSF--NlN ignns CAT_STRAG : 149- 157: ipwid FSSFnlNiG nnssf Q 17: 17.2048 19( 19) F-x-[GST]-x-[DNR]-L-x(0,1)-N Occurences: 19(19) CAT1_CLOPE : 150- 156: ipwvn FtGfNL-N iynda CAT1_STAAU : 149- 155: ipwts FtGfNL-N innns CAT2_CLOPE : 146- 152: ipwst FdGfNL-N lqkgy CAT2_ECOLI : 149- 155: lpwvs FdGfNL-N itgnd CAT2_HAEIN : 149- 155: lpwvs FdGfNL-N itgnd CAT2_STAAU : 149- 155: ipwid FsSfNL-N ignns CAT3_ECOLI : 149- 155: lpwvn FdSfNL-N vanft CAT3_STAAU : 149- 155: ipwid FsSfNL-N ignns CAT4_STAAU : 149- 155: ipwid FsSfNL-N ignns CAT5_STAAU : 149- 155: ipwid FsSfNL-N ignns CAT_BACPU : 147- 153: lpwid FtSfNL-N vstde CAT_CAMCO : 146- 152: ipwts FeGfNL-N lkkgy CAT_CLOBU : 150- 156: ipwvs FtGfNL-N vyneg CAT_CLODI : 146- 152: ipwst FdGfNL-N lqkgy CAT_ECOLI : 153- 159: npwvs FtSfDL-N vanmd CAT_PROMI : 153- 159: npwvs FtSfNL-N manin CAT_STAIN : 149- 155: ipwid FsSfNL-N ignns CAT_STRAC : 201- 208: aaadg FhTaRLtN elqtl CAT_STRAG : 149- 155: ipwid FsSfNL-N ignns R 18: 12.0102 24( 19) F-x(3,4)-L-N Occurences: 24(19) CAT1_CLOPE : 17- 22: nrkpy Fehy-LN avrct CAT1_CLOPE : 150- 156: ipwvn FtgfnLN iynda CAT1_STAAU : 17- 22: krkei Fnhy-LN qqttf CAT1_STAAU : 149- 155: ipwts FtgfnLN innns CAT2_CLOPE : 146- 152: ipwst FdgfnLN lqkgy CAT2_ECOLI : 3- 9: mn FtridLN twnrr CAT2_ECOLI : 149- 155: lpwvs FdgfnLN itgnd CAT2_HAEIN : 3- 9: mn FtridLN twnrr CAT2_HAEIN : 149- 155: lpwvs FdgfnLN itgnd CAT2_STAAU : 149- 155: ipwid FssfnLN ignns CAT3_ECOLI : 149- 155: lpwvn FdsfnLN vanft CAT3_STAAU : 149- 155: ipwid FssfnLN ignns CAT4_STAAU : 149- 155: ipwid FssfnLN ignns CAT5_STAAU : 149- 155: ipwid FssfnLN ignns CAT_BACPU : 147- 153: lpwid FtsfnLN vstde CAT_CAMCO : 146- 152: ipwts FegfnLN lkkgy CAT_CLOBU : 17- 22: srkpy Fehy-LN nvkct CAT_CLOBU : 150- 156: ipwvs FtgfnLN vyneg CAT_CLODI : 146- 152: ipwst FdgfnLN lqkgy CAT_ECOLI : 153- 159: npwvs FtsfdLN vanmd CAT_PROMI : 153- 159: npwvs FtsfnLN manin CAT_STAIN : 149- 155: ipwid FssfnLN ignns CAT_STRAC : 73- 78: nrhee Frmc-LN ssgdp CAT_STRAG : 149- 155: ipwid FssfnLN ignns S 19: 11.5102 22( 19) F-x(1,3)-L-N Occurences: 22(19) CAT1_CLOPE : 17- 22: nrkpy FehyLN avrct CAT1_CLOPE : 153- 156: vnftg Fn--LN iynda CAT1_STAAU : 17- 22: krkei FnhyLN qqttf CAT1_STAAU : 152- 155: tsftg Fn--LN innns CAT2_CLOPE : 149- 152: stfdg Fn--LN lqkgy CAT2_ECOLI : 152- 155: vsfdg Fn--LN itgnd CAT2_HAEIN : 152- 155: vsfdg Fn--LN itgnd CAT2_STAAU : 152- 155: idfss Fn--LN ignns CAT3_ECOLI : 152- 155: vnfds Fn--LN vanft CAT3_STAAU : 152- 155: idfss Fn--LN ignns CAT4_STAAU : 152- 155: idfss Fn--LN ignns CAT5_STAAU : 152- 155: idfss Fn--LN ignns CAT_BACPU : 150- 153: idfts Fn--LN vstde CAT_CAMCO : 149- 152: tsfeg Fn--LN lkkgy CAT_CLOBU : 17- 22: srkpy FehyLN nvkct CAT_CLOBU : 153- 156: vsftg Fn--LN vyneg CAT_CLODI : 149- 152: stfdg Fn--LN lqkgy CAT_ECOLI : 156- 159: vsfts Fd--LN vanmd CAT_PROMI : 156- 159: vsfts Fn--LN manin CAT_STAIN : 152- 155: idfss Fn--LN ignns CAT_STRAC : 73- 78: nrhee FrmcLN ssgdp CAT_STRAG : 152- 155: idfss Fn--LN ignns T 20: 11.5102 29( 19) S-x(1,3)-W-x(2)-F Occurences: 29(19) CAT1_CLOPE : 143- 150: ntinv SsipWvnF tgfnl CAT1_CLOPE : 144- 150: tinvs Sip-WvnF tgfnl CAT1_STAAU : 142- 149: nafsl SiipWtsF tgfnl CAT2_CLOPE : 139- 146: nifnv SmipWstF dgfnl CAT2_ECOLI : 142- 149: nhlni SslpWvsF dgfnl CAT2_ECOLI : 143- 149: hlnis Slp-WvsF dgfnl CAT2_HAEIN : 142- 149: nhlni SslpWvsF dgfnl CAT2_HAEIN : 143- 149: hlnis Slp-WvsF dgfnl CAT2_STAAU : 142- 149: ntipi SmipWidF ssfnl CAT3_ECOLI : 142- 149: nhlni SalpWvnF dsfnl CAT3_STAAU : 142- 149: ntipi SmipWidF ssfnl CAT4_STAAU : 142- 149: ntlpi SmipWidF ssfnl CAT5_STAAU : 142- 149: ntvpi SmipWidF ssfnl CAT_BACPU : 96- 102: etktf Ssi-WtpF denfa CAT_BACPU : 97- 102: tktfs Si--WtpF denfa CAT_BACPU : 140- 147: nmfni SslpWidF tsfnl CAT_BACPU : 141- 147: mfnis Slp-WidF tsfnl CAT_CAMCO : 95- 101: etetf Ssi-WteF tadyt CAT_CAMCO : 96- 101: tetfs Si--WteF tadyt CAT_CAMCO : 139- 146: ntfpv SmipWtsF egfnl CAT_CLOBU : 143- 150: ntfsv SsipWvsF tgfnl CAT_CLOBU : 144- 150: tfsvs Sip-WvsF tgfnl CAT_CLODI : 139- 146: nifnv SmipWstF dgfnl CAT_ECOLI : 146- 153: nmffv SanpWvsF tsfdl CAT_PROMI : 146- 153: nmffv SanpWvsF tsfnl CAT_STAIN : 142- 149: ntipi SmipWidF ssfnl CAT_STRAC : 148- 155: nafdv SslpWvsF tgftl CAT_STRAC : 149- 155: afdvs Slp-WvsF tgftl CAT_STRAG : 142- 149: ntipi SmipWidF ssfnl Number of patterns evaluated by Pratt:892 Total running time: 2 seconds