------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 20 sequences from file CASEIN_ALPHA_BETA PATTERN CONSERVATION: CM: min Nr of Seqs to Match 20 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CASEIN_ALPHA_BETA.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CAS1_BOVIN 214 CAS1_CAPHI 214 CAS1_CAVPO 198 CAS1_MOUSE 313 CAS1_RABIT 215 CAS1_RAT 284 CAS1_SHEEP 206 CAS2_BOVIN 222 CAS2_CAPHI 223 CAS2_CAVPO 223 CAS2_MOUSE 143 CAS2_PIG 235 CAS2_RAT 179 CAS2_SHEEP 223 CASB_BOVIN 224 CASB_HUMAN 226 CASB_MOUSE 231 CASB_RABIT 228 CASB_RAT 231 CASB_SHEEP 222 Pratt run started at Thu Feb 6 19:04:46 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 33.3604 20( 20) M-K-x(2)-I-x(2)-C-L-x-A-x-A-x-A 2: 29.1904 20( 20) K-x(2)-I-x(2)-C-L-x-A-x-A-x-A 3: 28.1904 20( 20) K-x(1,2)-I-x(2,3)-C-L-x-A-x-A-x-A 4: 25.0203 20( 20) I-x(2)-C-L-x-A-x-A-x-A 5: 24.5203 21( 20) I-x(2,3)-C-L-x-A-x-A-x-A 6: 20.8503 20( 20) C-L-x-A-x-A-x-A 7: 16.6802 31( 20) S-S-E-E 8: 16.6802 20( 20) L-x-A-x-A-x-A 9: 16.1802 26( 20) L-x(0,1)-A-x-A-x-A 10: 16.1802 20( 20) L-x(0,1)-V-A-x-A 11: 15.1802 44( 20) S-x(1,2)-S-x(1,3)-S-x-E 12: 15.1802 20( 20) M-K-x(1,2)-I-x(1,3)-L 13: 12.5102 35( 20) S-x(3)-S-x-E 14: 12.5102 40( 20) S-E-E 15: 12.5102 23( 20) V-A-x-A 16: 12.5102 22( 20) A-x-A-x-A 17: 12.0102 62( 20) S-x-S-x(1,2)-E 18: 12.0102 38( 20) S-x(1,2)-S-x(2)-E 19: 12.0102 56( 20) S-x(0,1)-S-x(2)-E 20: 12.0102 23( 20) M-K-x(2,3)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 51.0094 20( 20) M-K-[FLV]-[FIL]-I-[FL]-[AT]-C-L-[LV]-A-x-A-[FLV]-A B 2: 46.8393 20( 20) K-[FLV]-[FIL]-I-[FL]-[AT]-C-L-[LV]-A-x-A-[FLV]-A C 3: 45.6601 20( 20) M-K-x(2)-I-[FL]-[AT]-C-L-[LV]-A-x-A-[FLV]-A D 4: 37.3200 20( 20) I-[FL]-[AT]-C-L-[LV]-A-x-A-[FLV]-A E 5: 34.0240 20( 20) K-x(1,2)-I-x(2,3)-C-L-[LV]-A-x-A-[FLV]-A F 6: 33.5240 20( 20) M-K-x(1,2)-I-x(1,3)-L-[LV]-A-x-A-[FLV]-A G 7: 30.3539 21( 20) I-x(2,3)-C-L-[LV]-A-x-A-[FLV]-A H 8: 26.6839 20( 20) C-L-[LV]-A-x-A-[FLV]-A I 9: 22.5138 20( 20) L-[LV]-A-x-A-[FLV]-A J 10: 18.8301 26( 20) L-x(0,1)-A-x-A-[FLV]-A K 11: 17.1959 28( 20) S-x(1,2)-S-[ASV]-x-E-x-[STV] L 12: 16.9085 30( 20) S-x-[DERS]-[ENST]-S-x-E M 13: 16.6802 31( 20) S-S-E-E N 14: 16.1802 20( 20) L-x(0,1)-V-A-x-A O 15: 15.1893 53( 20) S-x(0,1)-S-[AS]-x-E P 16: 15.1802 44( 20) S-x(1,2)-S-x(1,3)-S-x-E Q 17: 15.1600 20( 20) A-x-A-[FLV]-A R 18: 12.5102 40( 20) S-E-E S 19: 12.5102 23( 20) V-A-x-A T 20: 12.5102 22( 20) A-x-A-x-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 51.0094 20( 20) M-K-[FLV]-[FIL]-I-[FL]-[AT]-C-L-[LV]-A-x-A-[FLV]-A Occurences: 20(20) CAS1_BOVIN : 1- 15: MKLLILTCLVAvALA rpkhp CAS1_CAPHI : 1- 15: MKLLILTCLVAvALA rpkhp CAS1_CAVPO : 1- 15: MKLLILTCLVAsAVA mpkfp CAS1_MOUSE : 1- 15: MKLLILTCLVAaAFA mprlh CAS1_RABIT : 1- 15: MKLLILTCLVAtALA rhkfh CAS1_RAT : 1- 15: MKLLILTCLVAaALA lprah CAS1_SHEEP : 1- 15: MKLLILTCLVAvALA rpkhp CAS2_BOVIN : 1- 15: MKFFIFTCLLAvALA kntme CAS2_CAPHI : 1- 15: MKFFIFTCLLAvALA khkme CAS2_CAVPO : 1- 15: MKLFIFTCLLAvALA khkse CAS2_MOUSE : 1- 15: MKFIILTCLLAvALA kqrme CAS2_PIG : 1- 15: MKFFIFTCLLAvAFA kheme CAS2_RAT : 1- 15: MKFFIFTCLVAaALA khavk CAS2_SHEEP : 1- 15: MKFFIFTCLLAvALA khkme CASB_BOVIN : 1- 15: MKVLILACLVAlALA relee CASB_HUMAN : 1- 15: MKVLILACLVAlALA retie CASB_MOUSE : 1- 15: MKVFILACLVAlALA rettf CASB_RABIT : 1- 15: MKVLILACLVAlALA rekeq CASB_RAT : 1- 15: MKVFILACLVAlALA rekda CASB_SHEEP : 1- 15: MKVLILACLVAlALA reqee B 2: 46.8393 20( 20) K-[FLV]-[FIL]-I-[FL]-[AT]-C-L-[LV]-A-x-A-[FLV]-A Occurences: 20(20) CAS1_BOVIN : 2- 15: m KLLILTCLVAvALA rpkhp CAS1_CAPHI : 2- 15: m KLLILTCLVAvALA rpkhp CAS1_CAVPO : 2- 15: m KLLILTCLVAsAVA mpkfp CAS1_MOUSE : 2- 15: m KLLILTCLVAaAFA mprlh CAS1_RABIT : 2- 15: m KLLILTCLVAtALA rhkfh CAS1_RAT : 2- 15: m KLLILTCLVAaALA lprah CAS1_SHEEP : 2- 15: m KLLILTCLVAvALA rpkhp CAS2_BOVIN : 2- 15: m KFFIFTCLLAvALA kntme CAS2_CAPHI : 2- 15: m KFFIFTCLLAvALA khkme CAS2_CAVPO : 2- 15: m KLFIFTCLLAvALA khkse CAS2_MOUSE : 2- 15: m KFIILTCLLAvALA kqrme CAS2_PIG : 2- 15: m KFFIFTCLLAvAFA kheme CAS2_RAT : 2- 15: m KFFIFTCLVAaALA khavk CAS2_SHEEP : 2- 15: m KFFIFTCLLAvALA khkme CASB_BOVIN : 2- 15: m KVLILACLVAlALA relee CASB_HUMAN : 2- 15: m KVLILACLVAlALA retie CASB_MOUSE : 2- 15: m KVFILACLVAlALA rettf CASB_RABIT : 2- 15: m KVLILACLVAlALA rekeq CASB_RAT : 2- 15: m KVFILACLVAlALA rekda CASB_SHEEP : 2- 15: m KVLILACLVAlALA reqee C 3: 45.6601 20( 20) M-K-x(2)-I-[FL]-[AT]-C-L-[LV]-A-x-A-[FLV]-A Occurences: 20(20) CAS1_BOVIN : 1- 15: MKllILTCLVAvALA rpkhp CAS1_CAPHI : 1- 15: MKllILTCLVAvALA rpkhp CAS1_CAVPO : 1- 15: MKllILTCLVAsAVA mpkfp CAS1_MOUSE : 1- 15: MKllILTCLVAaAFA mprlh CAS1_RABIT : 1- 15: MKllILTCLVAtALA rhkfh CAS1_RAT : 1- 15: MKllILTCLVAaALA lprah CAS1_SHEEP : 1- 15: MKllILTCLVAvALA rpkhp CAS2_BOVIN : 1- 15: MKffIFTCLLAvALA kntme CAS2_CAPHI : 1- 15: MKffIFTCLLAvALA khkme CAS2_CAVPO : 1- 15: MKlfIFTCLLAvALA khkse CAS2_MOUSE : 1- 15: MKfiILTCLLAvALA kqrme CAS2_PIG : 1- 15: MKffIFTCLLAvAFA kheme CAS2_RAT : 1- 15: MKffIFTCLVAaALA khavk CAS2_SHEEP : 1- 15: MKffIFTCLLAvALA khkme CASB_BOVIN : 1- 15: MKvlILACLVAlALA relee CASB_HUMAN : 1- 15: MKvlILACLVAlALA retie CASB_MOUSE : 1- 15: MKvfILACLVAlALA rettf CASB_RABIT : 1- 15: MKvlILACLVAlALA rekeq CASB_RAT : 1- 15: MKvfILACLVAlALA rekda CASB_SHEEP : 1- 15: MKvlILACLVAlALA reqee D 4: 37.3200 20( 20) I-[FL]-[AT]-C-L-[LV]-A-x-A-[FLV]-A Occurences: 20(20) CAS1_BOVIN : 5- 15: mkll ILTCLVAvALA rpkhp CAS1_CAPHI : 5- 15: mkll ILTCLVAvALA rpkhp CAS1_CAVPO : 5- 15: mkll ILTCLVAsAVA mpkfp CAS1_MOUSE : 5- 15: mkll ILTCLVAaAFA mprlh CAS1_RABIT : 5- 15: mkll ILTCLVAtALA rhkfh CAS1_RAT : 5- 15: mkll ILTCLVAaALA lprah CAS1_SHEEP : 5- 15: mkll ILTCLVAvALA rpkhp CAS2_BOVIN : 5- 15: mkff IFTCLLAvALA kntme CAS2_CAPHI : 5- 15: mkff IFTCLLAvALA khkme CAS2_CAVPO : 5- 15: mklf IFTCLLAvALA khkse CAS2_MOUSE : 5- 15: mkfi ILTCLLAvALA kqrme CAS2_PIG : 5- 15: mkff IFTCLLAvAFA kheme CAS2_RAT : 5- 15: mkff IFTCLVAaALA khavk CAS2_SHEEP : 5- 15: mkff IFTCLLAvALA khkme CASB_BOVIN : 5- 15: mkvl ILACLVAlALA relee CASB_HUMAN : 5- 15: mkvl ILACLVAlALA retie CASB_MOUSE : 5- 15: mkvf ILACLVAlALA rettf CASB_RABIT : 5- 15: mkvl ILACLVAlALA rekeq CASB_RAT : 5- 15: mkvf ILACLVAlALA rekda CASB_SHEEP : 5- 15: mkvl ILACLVAlALA reqee E 5: 34.0240 20( 20) K-x(1,2)-I-x(2,3)-C-L-[LV]-A-x-A-[FLV]-A Occurences: 20(20) CAS1_BOVIN : 2- 15: m KllIlt-CLVAvALA rpkhp CAS1_CAPHI : 2- 15: m KllIlt-CLVAvALA rpkhp CAS1_CAVPO : 2- 15: m KllIlt-CLVAsAVA mpkfp CAS1_MOUSE : 2- 15: m KllIlt-CLVAaAFA mprlh CAS1_RABIT : 2- 15: m KllIlt-CLVAtALA rhkfh CAS1_RAT : 2- 15: m KllIlt-CLVAaALA lprah CAS1_SHEEP : 2- 15: m KllIlt-CLVAvALA rpkhp CAS2_BOVIN : 2- 15: m KffIft-CLLAvALA kntme CAS2_CAPHI : 2- 15: m KffIft-CLLAvALA khkme CAS2_CAVPO : 2- 15: m KlfIft-CLLAvALA khkse CAS2_MOUSE : 2- 15: m KfiIlt-CLLAvALA kqrme CAS2_MOUSE : 2- 15: m Kf-IiltCLLAvALA kqrme CAS2_PIG : 2- 15: m KffIft-CLLAvAFA kheme CAS2_RAT : 2- 15: m KffIft-CLVAaALA khavk CAS2_SHEEP : 2- 15: m KffIft-CLLAvALA khkme CASB_BOVIN : 2- 15: m KvlIla-CLVAlALA relee CASB_HUMAN : 2- 15: m KvlIla-CLVAlALA retie CASB_MOUSE : 2- 15: m KvfIla-CLVAlALA rettf CASB_RABIT : 2- 15: m KvlIla-CLVAlALA rekeq CASB_RAT : 2- 15: m KvfIla-CLVAlALA rekda CASB_SHEEP : 2- 15: m KvlIla-CLVAlALA reqee F 6: 33.5240 20( 20) M-K-x(1,2)-I-x(1,3)-L-[LV]-A-x-A-[FLV]-A Occurences: 20(20) CAS1_BOVIN : 1- 15: MKllIltcLVAvALA rpkhp CAS1_CAPHI : 1- 15: MKllIltcLVAvALA rpkhp CAS1_CAVPO : 1- 15: MKllIltcLVAsAVA mpkfp CAS1_MOUSE : 1- 15: MKllIltcLVAaAFA mprlh CAS1_RABIT : 1- 15: MKllIltcLVAtALA rhkfh CAS1_RAT : 1- 15: MKllIltcLVAaALA lprah CAS1_SHEEP : 1- 15: MKllIltcLVAvALA rpkhp CAS2_BOVIN : 1- 15: MKffIftcLLAvALA kntme CAS2_CAPHI : 1- 15: MKffIftcLLAvALA khkme CAS2_CAVPO : 1- 15: MKlfIftcLLAvALA khkse CAS2_MOUSE : 1- 15: MKfiIltcLLAvALA kqrme CAS2_PIG : 1- 15: MKffIftcLLAvAFA kheme CAS2_RAT : 1- 15: MKffIftcLVAaALA khavk CAS2_SHEEP : 1- 15: MKffIftcLLAvALA khkme CASB_BOVIN : 1- 15: MKvlIlacLVAlALA relee CASB_HUMAN : 1- 15: MKvlIlacLVAlALA retie CASB_MOUSE : 1- 15: MKvfIlacLVAlALA rettf CASB_RABIT : 1- 15: MKvlIlacLVAlALA rekeq CASB_RAT : 1- 15: MKvfIlacLVAlALA rekda CASB_SHEEP : 1- 15: MKvlIlacLVAlALA reqee G 7: 30.3539 21( 20) I-x(2,3)-C-L-[LV]-A-x-A-[FLV]-A Occurences: 21(20) CAS1_BOVIN : 5- 15: mkll Ilt-CLVAvALA rpkhp CAS1_CAPHI : 5- 15: mkll Ilt-CLVAvALA rpkhp CAS1_CAVPO : 5- 15: mkll Ilt-CLVAsAVA mpkfp CAS1_MOUSE : 5- 15: mkll Ilt-CLVAaAFA mprlh CAS1_RABIT : 5- 15: mkll Ilt-CLVAtALA rhkfh CAS1_RAT : 5- 15: mkll Ilt-CLVAaALA lprah CAS1_SHEEP : 5- 15: mkll Ilt-CLVAvALA rpkhp CAS2_BOVIN : 5- 15: mkff Ift-CLLAvALA kntme CAS2_CAPHI : 5- 15: mkff Ift-CLLAvALA khkme CAS2_CAVPO : 5- 15: mklf Ift-CLLAvALA khkse CAS2_MOUSE : 4- 15: mkf IiltCLLAvALA kqrme CAS2_MOUSE : 5- 15: mkfi Ilt-CLLAvALA kqrme CAS2_PIG : 5- 15: mkff Ift-CLLAvAFA kheme CAS2_RAT : 5- 15: mkff Ift-CLVAaALA khavk CAS2_SHEEP : 5- 15: mkff Ift-CLLAvALA khkme CASB_BOVIN : 5- 15: mkvl Ila-CLVAlALA relee CASB_HUMAN : 5- 15: mkvl Ila-CLVAlALA retie CASB_MOUSE : 5- 15: mkvf Ila-CLVAlALA rettf CASB_RABIT : 5- 15: mkvl Ila-CLVAlALA rekeq CASB_RAT : 5- 15: mkvf Ila-CLVAlALA rekda CASB_SHEEP : 5- 15: mkvl Ila-CLVAlALA reqee H 8: 26.6839 20( 20) C-L-[LV]-A-x-A-[FLV]-A Occurences: 20(20) CAS1_BOVIN : 8- 15: llilt CLVAvALA rpkhp CAS1_CAPHI : 8- 15: llilt CLVAvALA rpkhp CAS1_CAVPO : 8- 15: llilt CLVAsAVA mpkfp CAS1_MOUSE : 8- 15: llilt CLVAaAFA mprlh CAS1_RABIT : 8- 15: llilt CLVAtALA rhkfh CAS1_RAT : 8- 15: llilt CLVAaALA lprah CAS1_SHEEP : 8- 15: llilt CLVAvALA rpkhp CAS2_BOVIN : 8- 15: ffift CLLAvALA kntme CAS2_CAPHI : 8- 15: ffift CLLAvALA khkme CAS2_CAVPO : 8- 15: lfift CLLAvALA khkse CAS2_MOUSE : 8- 15: fiilt CLLAvALA kqrme CAS2_PIG : 8- 15: ffift CLLAvAFA kheme CAS2_RAT : 8- 15: ffift CLVAaALA khavk CAS2_SHEEP : 8- 15: ffift CLLAvALA khkme CASB_BOVIN : 8- 15: vlila CLVAlALA relee CASB_HUMAN : 8- 15: vlila CLVAlALA retie CASB_MOUSE : 8- 15: vfila CLVAlALA rettf CASB_RABIT : 8- 15: vlila CLVAlALA rekeq CASB_RAT : 8- 15: vfila CLVAlALA rekda CASB_SHEEP : 8- 15: vlila CLVAlALA reqee I 9: 22.5138 20( 20) L-[LV]-A-x-A-[FLV]-A Occurences: 20(20) CAS1_BOVIN : 9- 15: liltc LVAvALA rpkhp CAS1_CAPHI : 9- 15: liltc LVAvALA rpkhp CAS1_CAVPO : 9- 15: liltc LVAsAVA mpkfp CAS1_MOUSE : 9- 15: liltc LVAaAFA mprlh CAS1_RABIT : 9- 15: liltc LVAtALA rhkfh CAS1_RAT : 9- 15: liltc LVAaALA lprah CAS1_SHEEP : 9- 15: liltc LVAvALA rpkhp CAS2_BOVIN : 9- 15: fiftc LLAvALA kntme CAS2_CAPHI : 9- 15: fiftc LLAvALA khkme CAS2_CAVPO : 9- 15: fiftc LLAvALA khkse CAS2_MOUSE : 9- 15: iiltc LLAvALA kqrme CAS2_PIG : 9- 15: fiftc LLAvAFA kheme CAS2_RAT : 9- 15: fiftc LVAaALA khavk CAS2_SHEEP : 9- 15: fiftc LLAvALA khkme CASB_BOVIN : 9- 15: lilac LVAlALA relee CASB_HUMAN : 9- 15: lilac LVAlALA retie CASB_MOUSE : 9- 15: filac LVAlALA rettf CASB_RABIT : 9- 15: lilac LVAlALA rekeq CASB_RAT : 9- 15: filac LVAlALA rekda CASB_SHEEP : 9- 15: lilac LVAlALA reqee J 10: 18.8301 26( 20) L-x(0,1)-A-x-A-[FLV]-A Occurences: 26(20) CAS1_BOVIN : 9- 15: liltc LvAvALA rpkhp CAS1_CAPHI : 9- 15: liltc LvAvALA rpkhp CAS1_CAVPO : 9- 15: liltc LvAsAVA mpkfp CAS1_MOUSE : 9- 15: liltc LvAaAFA mprlh CAS1_RABIT : 9- 15: liltc LvAtALA rhkfh CAS1_RAT : 9- 15: liltc LvAaALA lprah CAS1_SHEEP : 9- 15: liltc LvAvALA rpkhp CAS2_BOVIN : 9- 15: fiftc LlAvALA kntme CAS2_BOVIN : 10- 15: iftcl L-AvALA kntme CAS2_CAPHI : 9- 15: fiftc LlAvALA khkme CAS2_CAPHI : 10- 15: iftcl L-AvALA khkme CAS2_CAVPO : 9- 15: fiftc LlAvALA khkse CAS2_CAVPO : 10- 15: iftcl L-AvALA khkse CAS2_MOUSE : 9- 15: iiltc LlAvALA kqrme CAS2_MOUSE : 10- 15: iltcl L-AvALA kqrme CAS2_PIG : 9- 15: fiftc LlAvAFA kheme CAS2_PIG : 10- 15: iftcl L-AvAFA kheme CAS2_RAT : 9- 15: fiftc LvAaALA khavk CAS2_SHEEP : 9- 15: fiftc LlAvALA khkme CAS2_SHEEP : 10- 15: iftcl L-AvALA khkme CASB_BOVIN : 9- 15: lilac LvAlALA relee CASB_HUMAN : 9- 15: lilac LvAlALA retie CASB_MOUSE : 9- 15: filac LvAlALA rettf CASB_RABIT : 9- 15: lilac LvAlALA rekeq CASB_RAT : 9- 15: filac LvAlALA rekda CASB_SHEEP : 9- 15: lilac LvAlALA reqee K 11: 17.1959 28( 20) S-x(1,2)-S-[ASV]-x-E-x-[STV] Occurences: 28(20) CAS1_BOVIN : 79- 87: qmeae SisSSeEiV pnsve CAS1_CAPHI : 79- 87: qmkag SssSSeEiV pnsae CAS1_CAPHI : 80- 87: mkags Ss-SSeEiV pnsae CAS1_CAVPO : 80- 88: eqrea SsiSSsEeV vpknt CAS1_CAVPO : 81- 88: qreas Si-SSsEeV vpknt CAS1_CAVPO : 81- 89: qreas SisSSeEvV pknte CAS1_MOUSE : 91- 99: aqeds SisSSsEeS eeaip CAS1_RABIT : 101- 108: teasi Ss-SSeEiV psstk CAS1_RAT : 94- 102: qedss SssSSsEeS kdaip CAS1_RAT : 95- 102: edsss Ss-SSsEeS kdaip CAS1_SHEEP : 79- 87: qmkag SssSSeEiV pnsae CAS1_SHEEP : 80- 87: mkags Ss-SSeEiV pnsae CAS2_BOVIN : 68- 76: neeey SigSSsEeS aevat CAS2_CAPHI : 69- 77: neeey SirSSsEeS aevap CAS2_CAVPO : 147- 155: taves SssSStEkS tdvfi CAS2_CAVPO : 148- 155: avess Ss-SStEkS tdvfi CAS2_MOUSE : 85- 92: kmmdm Sv-SArEkT vmtee CAS2_PIG : 70- 77: evgya Ss-SSsEeS vdipa CAS2_PIG : 70- 78: evgya SssSSeEsV dipae CAS2_PIG : 71- 78: vgyas Ss-SSeEsV dipae CAS2_RAT : 52- 59: pqdsa Ss-SSsEeS seeis CAS2_RAT : 52- 60: pqdsa SssSSeEsS eeise CAS2_RAT : 53- 60: qdsas Ss-SSeEsS eeise CAS2_RAT : 56- 64: assss SeeSSeEiS ekieq CAS2_SHEEP : 69- 77: deeey SirSSsEeS aevap CASB_BOVIN : 30- 37: geive Sl-SSsEeS itrin CASB_HUMAN : 21- 28: retie Sl-SSsEeS iteyk CASB_MOUSE : 28- 35: ssetd Si-SSeEsV ehine CASB_RABIT : 30- 38: teavg SvsSSeEiT hinkq CASB_RAT : 29- 36: ssetg Si-SSeEsV ehine CASB_SHEEP : 30- 37: getve Sl-SSsEeS ithin L 12: 16.9085 30( 20) S-x-[DERS]-[ENST]-S-x-E Occurences: 30(20) CAS1_BOVIN : 79- 85: qmeae SiSSSeE ivpns CAS1_CAPHI : 79- 85: qmkag SsSSSeE ivpns CAS1_CAVPO : 35- 41: qrggs SsSSSsE erlke CAS1_CAVPO : 36- 42: rggss SsSSSeE rlkee CAS1_CAVPO : 81- 87: qreas SiSSSeE vvpkn CAS1_MOUSE : 91- 97: aqeds SiSSSsE eseea CAS1_MOUSE : 95- 101: ssiss SsEESeE aipni CAS1_RABIT : 99- 105: retea SiSSSsE eivps CAS1_RAT : 94- 100: qedss SsSSSsE eskda CAS1_RAT : 95- 101: edsss SsSSSeE skdai CAS1_SHEEP : 79- 85: qmkag SsSSSeE ivpns CAS2_BOVIN : 72- 78: ysigs SsEESaE vatee CAS2_CAPHI : 69- 75: neeey SiRSSsE esaev CAS2_CAPHI : 73- 79: ysirs SsEESaE vapee CAS2_CAVPO : 69- 75: kmaff SrSSSeE fadih CAS2_CAVPO : 147- 153: taves SsSSStE kstdv CAS2_MOUSE : 28- 34: issee SmDNSqE nfkqn CAS2_PIG : 70- 76: evgya SsSSSeE svdip CAS2_RAT : 52- 58: pqdsa SsSSSeE sseei CAS2_RAT : 55- 61: sasss SsEESsE eisek CAS2_RAT : 56- 62: assss SeESSeE iseki CAS2_RAT : 122- 128: vpsqe StSTSvE eilkk CAS2_SHEEP : 69- 75: deeey SiRSSsE esaev CAS2_SHEEP : 73- 79: ysirs SsEESaE vapee CASB_BOVIN : 30- 36: geive SlSSSeE sitri CASB_HUMAN : 21- 27: retie SlSSSeE sitey CASB_MOUSE : 30- 36: etdsi SsEESvE hineq CASB_RABIT : 30- 36: teavg SvSSSeE ithin CASB_RAT : 31- 37: etgsi SsEESvE hinek CASB_SHEEP : 30- 36: getve SlSSSeE sithi M 13: 16.6802 31( 20) S-S-E-E Occurences: 31(20) CAS1_BOVIN : 82- 85: aesis SSEE ivpns CAS1_CAPHI : 82- 85: agsss SSEE ivpns CAS1_CAVPO : 39- 42: sssss SSEE rlkee CAS1_CAVPO : 84- 87: assis SSEE vvpkn CAS1_MOUSE : 35- 38: qqqhs SSEE ifkqp CAS1_MOUSE : 95- 98: ssiss SSEE seeai CAS1_RABIT : 103- 106: asiss SSEE ivpss CAS1_RAT : 35- 38: qqens SSEE qeivk CAS1_RAT : 98- 101: sssss SSEE skdai CAS1_SHEEP : 82- 85: agsss SSEE ivpns CAS2_BOVIN : 24- 27: mehvs SSEE siisq CAS2_BOVIN : 72- 75: ysigs SSEE saeva CAS2_CAPHI : 24- 27: mehvs SSEE pinif CAS2_CAPHI : 73- 76: ysirs SSEE saeva CAS2_CAVPO : 24- 27: seqqs SSEE svsis CAS2_CAVPO : 45- 48: nmdti SSEE ticas CAS2_CAVPO : 72- 75: ffsrs SSEE fadih CAS2_MOUSE : 24- 27: meqyi SSEE smdns CAS2_PIG : 24- 27: mehvs SSEE sinis CAS2_PIG : 73- 76: yasss SSEE svdip CAS2_RAT : 24- 27: vkdkp SSEE sasvy CAS2_RAT : 55- 58: sasss SSEE sseei CAS2_RAT : 59- 62: sssee SSEE iseki CAS2_SHEEP : 24- 27: mehvs SSEE pinis CAS2_SHEEP : 73- 76: ysirs SSEE saeva CASB_BOVIN : 33- 36: vesls SSEE sitri CASB_HUMAN : 24- 27: iesls SSEE sitey CASB_MOUSE : 30- 33: etdsi SSEE svehi CASB_RABIT : 33- 36: vgsvs SSEE ithin CASB_RAT : 31- 34: etgsi SSEE svehi CASB_SHEEP : 33- 36: vesls SSEE sithi N 14: 16.1802 20( 20) L-x(0,1)-V-A-x-A Occurences: 20(20) CAS1_BOVIN : 9- 13: liltc L-VAvA larpk CAS1_CAPHI : 9- 13: liltc L-VAvA larpk CAS1_CAVPO : 9- 13: liltc L-VAsA vampk CAS1_MOUSE : 9- 13: liltc L-VAaA fampr CAS1_RABIT : 9- 13: liltc L-VAtA larhk CAS1_RAT : 9- 13: liltc L-VAaA lalpr CAS1_SHEEP : 9- 13: liltc L-VAvA larpk CAS2_BOVIN : 10- 15: iftcl LaVAlA kntme CAS2_CAPHI : 10- 15: iftcl LaVAlA khkme CAS2_CAVPO : 10- 15: iftcl LaVAlA khkse CAS2_MOUSE : 10- 15: iltcl LaVAlA kqrme CAS2_PIG : 10- 15: iftcl LaVAfA kheme CAS2_RAT : 9- 13: fiftc L-VAaA lakha CAS2_SHEEP : 10- 15: iftcl LaVAlA khkme CASB_BOVIN : 9- 13: lilac L-VAlA larel CASB_HUMAN : 9- 13: lilac L-VAlA laret CASB_MOUSE : 9- 13: filac L-VAlA laret CASB_RABIT : 9- 13: lilac L-VAlA larek CASB_RAT : 9- 13: filac L-VAlA larek CASB_SHEEP : 9- 13: lilac L-VAlA lareq O 15: 15.1893 53( 20) S-x(0,1)-S-[AS]-x-E Occurences: 53(20) CAS1_BOVIN : 79- 84: qmeae SiSSsE eivpn CAS1_BOVIN : 81- 85: eaesi S-SSeE ivpns CAS1_CAPHI : 79- 84: qmkag SsSSsE eivpn CAS1_CAPHI : 80- 84: mkags S-SSsE eivpn CAS1_CAPHI : 80- 85: mkags SsSSeE ivpns CAS1_CAPHI : 81- 85: kagss S-SSeE ivpns CAS1_CAVPO : 36- 41: rggss SsSSsE erlke CAS1_CAVPO : 37- 41: ggsss S-SSsE erlke CAS1_CAVPO : 37- 42: ggsss SsSSeE rlkee CAS1_CAVPO : 38- 42: gssss S-SSeE rlkee CAS1_CAVPO : 81- 86: qreas SiSSsE evvpk CAS1_CAVPO : 83- 87: eassi S-SSeE vvpkn CAS1_MOUSE : 34- 38: tqqqh S-SSeE ifkqp CAS1_MOUSE : 93- 97: edssi S-SSsE eseea CAS1_MOUSE : 93- 98: edssi SsSSeE seeai CAS1_MOUSE : 94- 98: dssis S-SSeE seeai CAS1_RABIT : 101- 105: teasi S-SSsE eivps CAS1_RABIT : 101- 106: teasi SsSSeE ivpss CAS1_RABIT : 102- 106: easis S-SSeE ivpss CAS1_RAT : 34- 38: tqqen S-SSeE qeivk CAS1_RAT : 78- 82: kitmd S-SAeE qatas CAS1_RAT : 95- 100: edsss SsSSsE eskda CAS1_RAT : 96- 100: dssss S-SSsE eskda CAS1_RAT : 96- 101: dssss SsSSeE skdai CAS1_RAT : 97- 101: sssss S-SSeE skdai CAS1_SHEEP : 79- 84: qmkag SsSSsE eivpn CAS1_SHEEP : 80- 84: mkags S-SSsE eivpn CAS1_SHEEP : 80- 85: mkags SsSSeE ivpns CAS1_SHEEP : 81- 85: kagss S-SSeE ivpns CAS2_BOVIN : 23- 27: tmehv S-SSeE siisq CAS2_BOVIN : 71- 75: eysig S-SSeE saeva CAS2_CAPHI : 23- 27: kmehv S-SSeE pinif CAS2_CAPHI : 72- 76: eysir S-SSeE saeva CAS2_CAVPO : 23- 27: kseqq S-SSeE svsis CAS2_CAVPO : 69- 74: kmaff SrSSsE efadi CAS2_CAVPO : 71- 75: affsr S-SSeE fadih CAS2_CAVPO : 148- 153: avess SsSStE kstdv CAS2_CAVPO : 149- 153: vesss S-SStE kstdv CAS2_MOUSE : 85- 90: kmmdm SvSArE ktvmt CAS2_PIG : 23- 27: emehv S-SSeE sinis CAS2_PIG : 70- 75: evgya SsSSsE esvdi CAS2_PIG : 71- 75: vgyas S-SSsE esvdi CAS2_PIG : 71- 76: vgyas SsSSeE svdip CAS2_PIG : 72- 76: gyass S-SSeE svdip CAS2_PIG : 154- 158: seepv S-SSqE entkt CAS2_RAT : 52- 57: pqdsa SsSSsE essee CAS2_RAT : 53- 57: qdsas S-SSsE essee CAS2_RAT : 53- 58: qdsas SsSSeE sseei CAS2_RAT : 54- 58: dsass S-SSeE sseei CAS2_SHEEP : 23- 27: kmehv S-SSeE pinis CAS2_SHEEP : 72- 76: eysir S-SSeE saeva CASB_BOVIN : 30- 35: geive SlSSsE esitr CASB_BOVIN : 32- 36: ivesl S-SSeE sitri CASB_HUMAN : 21- 26: retie SlSSsE esite CASB_HUMAN : 23- 27: tiesl S-SSeE sitey CASB_MOUSE : 28- 33: ssetd SiSSeE svehi CASB_RABIT : 30- 35: teavg SvSSsE eithi CASB_RABIT : 32- 36: avgsv S-SSeE ithin CASB_RAT : 29- 34: ssetg SiSSeE svehi CASB_SHEEP : 30- 35: getve SlSSsE esith CASB_SHEEP : 32- 36: tvesl S-SSeE sithi P 16: 15.1802 44( 20) S-x(1,2)-S-x(1,3)-S-x-E Occurences: 44(20) CAS1_BOVIN : 79- 85: qmeae Si-Ss--SeE ivpns CAS1_CAPHI : 79- 85: qmkag Ss-Ss--SeE ivpns CAS1_CAVPO : 34- 41: tqrgg SssSs--SsE erlke CAS1_CAVPO : 34- 41: tqrgg Ss-Sss-SsE erlke CAS1_CAVPO : 34- 42: tqrgg SssSss-SeE rlkee CAS1_CAVPO : 34- 42: tqrgg Ss-SsssSeE rlkee CAS1_CAVPO : 35- 41: qrggs Ss-Ss--SsE erlke CAS1_CAVPO : 35- 42: qrggs SssSs--SeE rlkee CAS1_CAVPO : 35- 42: qrggs Ss-Sss-SeE rlkee CAS1_CAVPO : 36- 42: rggss Ss-Ss--SeE rlkee CAS1_CAVPO : 80- 87: eqrea SsiSs--SeE vvpkn CAS1_CAVPO : 81- 87: qreas Si-Ss--SeE vvpkn CAS1_MOUSE : 90- 97: saqed SsiSs--SsE eseea CAS1_MOUSE : 90- 98: saqed SsiSss-SeE seeai CAS1_MOUSE : 91- 97: aqeds Si-Ss--SsE eseea CAS1_MOUSE : 91- 98: aqeds SisSs--SeE seeai CAS1_MOUSE : 91- 98: aqeds Si-Sss-SeE seeai CAS1_MOUSE : 93- 101: edssi SssSee-SeE aipni CAS1_MOUSE : 93- 101: edssi Ss-SseeSeE aipni CAS1_MOUSE : 94- 101: dssis Ss-See-SeE aipni CAS1_RABIT : 99- 105: retea Si-Ss--SsE eivps CAS1_RABIT : 99- 106: retea SisSs--SeE ivpss CAS1_RABIT : 99- 106: retea Si-Sss-SeE ivpss CAS1_RAT : 92- 100: saqed SssSss-SsE eskda CAS1_RAT : 92- 100: saqed Ss-SsssSsE eskda CAS1_RAT : 92- 101: saqed SssSsssSeE skdai CAS1_RAT : 93- 100: aqeds SssSs--SsE eskda CAS1_RAT : 93- 100: aqeds Ss-Sss-SsE eskda CAS1_RAT : 93- 101: aqeds SssSss-SeE skdai CAS1_RAT : 93- 101: aqeds Ss-SsssSeE skdai CAS1_RAT : 94- 100: qedss Ss-Ss--SsE eskda CAS1_RAT : 94- 101: qedss SssSs--SeE skdai CAS1_RAT : 94- 101: qedss Ss-Sss-SeE skdai CAS1_RAT : 95- 101: edsss Ss-Ss--SeE skdai CAS1_SHEEP : 79- 85: qmkag Ss-Ss--SeE ivpns CAS2_BOVIN : 25- 33: ehvss SeeSii-SqE tykqe CAS2_BOVIN : 68- 75: neeey SigSs--SeE saeva CAS2_BOVIN : 71- 78: eysig Ss-See-SaE vatee CAS2_CAPHI : 69- 76: neeey SirSs--SeE saeva CAS2_CAPHI : 72- 79: eysir Ss-See-SaE vapee CAS2_CAVPO : 25- 34: eqqss SeeSvsiSqE kfkdk CAS2_CAVPO : 28- 34: sssee Sv-Si--SqE kfkdk CAS2_CAVPO : 69- 75: kmaff Sr-Ss--SeE fadih CAS2_CAVPO : 146- 153: ttave SssSs--StE kstdv CAS2_CAVPO : 146- 153: ttave Ss-Sss-StE kstdv CAS2_CAVPO : 147- 153: taves Ss-Ss--StE kstdv CAS2_MOUSE : 25- 34: eqyis SeeSmdnSqE nfkqn CAS2_PIG : 25- 34: ehvss SeeSiniSqE kykqe CAS2_PIG : 70- 76: evgya Ss-Ss--SeE svdip CAS2_RAT : 50- 57: qtpqd SasSs--SsE essee CAS2_RAT : 50- 57: qtpqd Sa-Sss-SsE essee CAS2_RAT : 50- 58: qtpqd SasSss-SeE sseei CAS2_RAT : 50- 58: qtpqd Sa-SsssSeE sseei CAS2_RAT : 52- 58: pqdsa Ss-Ss--SeE sseei CAS2_RAT : 52- 61: pqdsa SssSseeSsE eisek CAS2_RAT : 53- 61: qdsas SssSee-SsE eisek CAS2_RAT : 53- 61: qdsas Ss-SseeSsE eisek CAS2_RAT : 53- 62: qdsas SssSeesSeE iseki CAS2_RAT : 54- 61: dsass Ss-See-SsE eisek CAS2_RAT : 54- 62: dsass Ss-SeesSeE iseki CAS2_RAT : 119- 128: iydvp SqeStstSvE eilkk CAS2_RAT : 122- 128: vpsqe St-St--SvE eilkk CAS2_SHEEP : 69- 76: deeey SirSs--SeE saeva CAS2_SHEEP : 72- 79: eysir Ss-See-SaE vapee CASB_BOVIN : 30- 36: geive Sl-Ss--SeE sitri CASB_HUMAN : 21- 27: retie Sl-Ss--SeE sitey CASB_MOUSE : 28- 36: ssetd SisSee-SvE hineq CASB_MOUSE : 28- 36: ssetd Si-SseeSvE hineq CASB_RABIT : 30- 36: teavg Sv-Ss--SeE ithin CASB_RAT : 29- 37: ssetg SisSee-SvE hinek CASB_RAT : 29- 37: ssetg Si-SseeSvE hinek CASB_SHEEP : 30- 36: getve Sl-Ss--SeE sithi Q 17: 15.1600 20( 20) A-x-A-[FLV]-A Occurences: 20(20) CAS1_BOVIN : 11- 15: ltclv AvALA rpkhp CAS1_CAPHI : 11- 15: ltclv AvALA rpkhp CAS1_CAVPO : 11- 15: ltclv AsAVA mpkfp CAS1_MOUSE : 11- 15: ltclv AaAFA mprlh CAS1_RABIT : 11- 15: ltclv AtALA rhkfh CAS1_RAT : 11- 15: ltclv AaALA lprah CAS1_SHEEP : 11- 15: ltclv AvALA rpkhp CAS2_BOVIN : 11- 15: ftcll AvALA kntme CAS2_CAPHI : 11- 15: ftcll AvALA khkme CAS2_CAVPO : 11- 15: ftcll AvALA khkse CAS2_MOUSE : 11- 15: ltcll AvALA kqrme CAS2_PIG : 11- 15: ftcll AvAFA kheme CAS2_RAT : 11- 15: ftclv AaALA khavk CAS2_SHEEP : 11- 15: ftcll AvALA khkme CASB_BOVIN : 11- 15: laclv AlALA relee CASB_HUMAN : 11- 15: laclv AlALA retie CASB_MOUSE : 11- 15: laclv AlALA rettf CASB_RABIT : 11- 15: laclv AlALA rekeq CASB_RAT : 11- 15: laclv AlALA rekda CASB_SHEEP : 11- 15: laclv AlALA reqee R 18: 12.5102 40( 20) S-E-E Occurences: 40(20) CAS1_BOVIN : 83- 85: esiss SEE ivpns CAS1_CAPHI : 83- 85: gssss SEE ivpns CAS1_CAVPO : 40- 42: sssss SEE rlkee CAS1_CAVPO : 85- 87: ssiss SEE vvpkn CAS1_MOUSE : 36- 38: qqhss SEE ifkqp CAS1_MOUSE : 78- 80: tmdaa SEE qamas CAS1_MOUSE : 96- 98: sisss SEE seeai CAS1_MOUSE : 99- 101: sssee SEE aipni CAS1_RABIT : 104- 106: sisss SEE ivpss CAS1_RAT : 36- 38: qenss SEE qeivk CAS1_RAT : 99- 101: sssss SEE skdai CAS1_SHEEP : 83- 85: gssss SEE ivpns CAS2_BOVIN : 25- 27: ehvss SEE siisq CAS2_BOVIN : 73- 75: sigss SEE saeva CAS2_BOVIN : 146- 148: eqlst SEE nskkt CAS2_CAPHI : 25- 27: ehvss SEE pinif CAS2_CAPHI : 74- 76: sirss SEE saeva CAS2_CAPHI : 147- 149: eqlst SEE nskkt CAS2_CAVPO : 25- 27: eqqss SEE svsis CAS2_CAVPO : 46- 48: mdtis SEE ticas CAS2_CAVPO : 73- 75: fsrss SEE fadih CAS2_MOUSE : 25- 27: eqyis SEE smdns CAS2_PIG : 25- 27: ehvss SEE sinis CAS2_PIG : 74- 76: assss SEE svdip CAS2_PIG : 149- 151: eelst SEE pvsss CAS2_RAT : 25- 27: kdkps SEE sasvy CAS2_RAT : 56- 58: assss SEE sseei CAS2_RAT : 60- 62: ssees SEE iseki CAS2_RAT : 70- 72: ekieq SEE qkvnl CAS2_SHEEP : 25- 27: ehvss SEE pinis CAS2_SHEEP : 74- 76: sirss SEE saeva CAS2_SHEEP : 147- 149: eqlst SEE nskkt CASB_BOVIN : 34- 36: eslss SEE sitri CASB_BOVIN : 50- 52: iekfq SEE qqqte CASB_HUMAN : 25- 27: eslss SEE sitey CASB_MOUSE : 31- 33: tdsis SEE svehi CASB_RABIT : 34- 36: gsvss SEE ithin CASB_RAT : 32- 34: tgsis SEE svehi CASB_SHEEP : 34- 36: eslss SEE sithi CASB_SHEEP : 50- 52: iekfq SEE qqqte S 19: 12.5102 23( 20) V-A-x-A Occurences: 23(20) CAS1_BOVIN : 10- 13: iltcl VAvA larpk CAS1_BOVIN : 12- 15: tclva VAlA rpkhp CAS1_CAPHI : 10- 13: iltcl VAvA larpk CAS1_CAPHI : 12- 15: tclva VAlA rpkhp CAS1_CAVPO : 10- 13: iltcl VAsA vampk CAS1_MOUSE : 10- 13: iltcl VAaA fampr CAS1_RABIT : 10- 13: iltcl VAtA larhk CAS1_RAT : 10- 13: iltcl VAaA lalpr CAS1_SHEEP : 10- 13: iltcl VAvA larpk CAS1_SHEEP : 12- 15: tclva VAlA rpkhp CAS2_BOVIN : 12- 15: tclla VAlA kntme CAS2_CAPHI : 12- 15: tclla VAlA khkme CAS2_CAVPO : 12- 15: tclla VAlA khkse CAS2_MOUSE : 12- 15: tclla VAlA kqrme CAS2_PIG : 12- 15: tclla VAfA kheme CAS2_RAT : 10- 13: iftcl VAaA lakha CAS2_SHEEP : 12- 15: tclla VAlA khkme CASB_BOVIN : 10- 13: ilacl VAlA larel CASB_HUMAN : 10- 13: ilacl VAlA laret CASB_MOUSE : 10- 13: ilacl VAlA laret CASB_RABIT : 10- 13: ilacl VAlA larek CASB_RAT : 10- 13: ilacl VAlA larek CASB_SHEEP : 10- 13: ilacl VAlA lareq T 20: 12.5102 22( 20) A-x-A-x-A Occurences: 22(20) CAS1_BOVIN : 11- 15: ltclv AvAlA rpkhp CAS1_CAPHI : 11- 15: ltclv AvAlA rpkhp CAS1_CAVPO : 11- 15: ltclv AsAvA mpkfp CAS1_MOUSE : 11- 15: ltclv AaAfA mprlh CAS1_MOUSE : 82- 86: aseeq AmAsA qedss CAS1_RABIT : 11- 15: ltclv AtAlA rhkfh CAS1_RAT : 11- 15: ltclv AaAlA lprah CAS1_RAT : 84- 88: saeeq AtAsA qedss CAS1_SHEEP : 11- 15: ltclv AvAlA rpkhp CAS2_BOVIN : 11- 15: ftcll AvAlA kntme CAS2_CAPHI : 11- 15: ftcll AvAlA khkme CAS2_CAVPO : 11- 15: ftcll AvAlA khkse CAS2_MOUSE : 11- 15: ltcll AvAlA kqrme CAS2_PIG : 11- 15: ftcll AvAfA kheme CAS2_RAT : 11- 15: ftclv AaAlA khavk CAS2_SHEEP : 11- 15: ftcll AvAlA khkme CASB_BOVIN : 11- 15: laclv AlAlA relee CASB_HUMAN : 11- 15: laclv AlAlA retie CASB_MOUSE : 11- 15: laclv AlAlA rettf CASB_RABIT : 11- 15: laclv AlAlA rekeq CASB_RAT : 11- 15: laclv AlAlA rekda CASB_SHEEP : 11- 15: laclv AlAlA reqee Number of patterns evaluated by Pratt:768 Total running time: 1 seconds