------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 18 sequences from file CARBOXYPEPT_SER_SER PATTERN CONSERVATION: CM: min Nr of Seqs to Match 18 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CARBOXYPEPT_SER_SER.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CBP1_HORVU 469 CBP1_ORYSA 510 CBP2_HORVU 419 CBP2_WHEAT 423 CBP3_HORVU 411 CBP3_ORYSA 500 CBP3_WHEAT 500 CBPX_ARATH 539 CBPY_CANAL 542 CBPY_YEAST 532 CPS1_PENJA 423 KEX1_YEAST 729 NF31_NAEFO 482 PRTP_HUMAN 480 PRTP_MOUSE 474 SXA2_SCHPO 507 VCP_AEDAE 441 YBY9_YEAST 508 Pratt run started at Thu Feb 6 19:04:35 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.8503 18( 18) W-x(2)-G-G-P-G 2: 16.6802 18( 18) G-G-P-G 3: 16.1802 19( 18) E-S-Y-x(0,1)-G 4: 16.1802 20( 18) G-x-S-Y-x(0,1)-G 5: 15.1802 20( 18) G-x(0,1)-E-x(0,2)-S-Y 6: 14.6802 20( 18) P-x(1,3)-G-x-G-x(1,3)-S 7: 12.5102 26( 18) G-x(2)-G-x(2)-S 8: 12.5102 32( 18) G-x-S-Y 9: 12.5102 36( 18) G-x-G-x-S 10: 12.5102 19( 18) G-P-G 11: 12.0102 28( 18) W-L-x(0,1)-G 12: 12.0102 45( 18) L-x(4)-G-x(2,3)-S 13: 12.0102 20( 18) N-G-x(2,3)-D 14: 12.0102 29( 18) L-x(5)-G-x(1,2)-G 15: 12.0102 23( 18) S-Y-x(0,1)-G 16: 12.0102 22( 18) S-x(2)-G-x(0,1)-Y 17: 12.0102 21( 18) S-x(2,3)-G-x(3)-P 18: 12.0102 24( 18) S-x(1,2)-G-x(3)-P 19: 12.0102 20( 18) S-x(4,5)-Y-x-P 20: 12.0102 20( 18) N-G-x(0,1)-P Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 33.1404 18( 18) W-x-[NQT]-G-G-P-G-[AC]-[AS]-[GS] B 2: 26.3578 18( 18) G-G-P-G-[AC]-[AS]-[GS] C 3: 23.7033 18( 18) G-x(0,1)-E-x(0,2)-S-Y-[AGI]-[EGS]-x(3)-[AP] D 4: 23.0295 18( 18) G-x-S-Y-[AGS]-[DGNST]-x(3)-[ADPST]-x(2)-[AGNSV]-x(2)-[AILV] E 5: 22.1878 18( 18) G-P-G-[AC]-[AS]-[GS] F 6: 19.9017 18( 18) S-x(2)-G-x(0,1)-Y-x-[NPT]-x(2)-[AES]-x(2)-[GIV] G 7: 19.2597 18( 18) S-x(2,3)-G-x(2)-[AGIV]-P-x(2)-[ADGS]-x(2)-[IMV] H 8: 19.2597 18( 18) S-x(1,2)-G-x(2)-[AGIV]-P-x(2)-[ADGS]-x(2)-[IMV] I 9: 18.3820 21( 18) G-[PTV]-G-x-S-x(2)-[ADNQST]-[ADEGST] J 10: 16.9394 27( 18) L-x(2)-[GNP]-x-G-x(2,3)-S-x(2)-[ADGQ] K 11: 16.4717 18( 18) S-x(4,5)-Y-[AGIV]-P-x(2)-[ANSV] L 12: 16.1802 19( 18) E-S-Y-x(0,1)-G M 13: 16.1802 20( 18) G-x-S-Y-x(0,1)-G N 14: 15.7105 22( 18) G-[GT]-x-G-x(2)-S O 15: 15.2078 25( 18) L-x(5)-G-x(1,2)-G-x(2)-[DS] P 16: 14.6802 20( 18) P-x(1,3)-G-x-G-x(1,3)-S Q 17: 12.0102 28( 18) W-L-x(0,1)-G R 18: 12.0102 20( 18) N-G-x(2,3)-D S 19: 12.0102 23( 18) S-Y-x(0,1)-G T 20: 12.0102 24( 18) S-x(1,2)-G-x(3)-P Best patterns with alignements: fitness hits(seqs) Pattern A 1: 33.1404 18( 18) W-x-[NQT]-G-G-P-G-[AC]-[AS]-[GS] Occurences: 18(18) CBP1_HORVU : 55- 64: dpvvl WlNGGPGCSS fdgfv CBP1_ORYSA : 91- 100: dplvl WlNGGPGCSS fdgfv CBP2_HORVU : 56- 65: aplvl WlNGGPGCSS vayga CBP2_WHEAT : 58- 67: aplvl WlNGGPGCSS vayga CBP3_HORVU : 46- 55: dpvvi WlTGGPGCSS elavf CBP3_ORYSA : 119- 128: dpvvi WlTGGPGCSS elavf CBP3_WHEAT : 119- 128: dpvvi WlTGGPGCSS elavf CBPX_ARATH : 132- 141: apvvi WlTGGPGCSS elavf CBPY_CANAL : 175- 184: dpvil WlNGGPGCSS ltglf CBPY_YEAST : 160- 169: dpvil WlNGGPGCSS ltglf CPS1_PENJA : 48- 57: aplaa WfNGGPGCSS miglf KEX1_YEAST : 94- 103: rplii WlNGGPGCSS mdgal NF31_NAEFO : 64- 73: dplvm WtNGGPGCSS lggea PRTP_HUMAN : 81- 90: spvvl WlNGGPGCSS ldgll PRTP_MOUSE : 76- 85: spvvl WlNGGPGCSS ldgll SXA2_SCHPO : 104- 113: etfiv WlQGGPGCAG tlgff VCP_AEDAE : 110- 119: apilv WlQGGPGASS lfgmf YBY9_YEAST : 125- 134: dpiil WlNGGPGCSS ftgll B 2: 26.3578 18( 18) G-G-P-G-[AC]-[AS]-[GS] Occurences: 18(18) CBP1_HORVU : 58- 64: vlwln GGPGCSS fdgfv CBP1_ORYSA : 94- 100: vlwln GGPGCSS fdgfv CBP2_HORVU : 59- 65: vlwln GGPGCSS vayga CBP2_WHEAT : 61- 67: vlwln GGPGCSS vayga CBP3_HORVU : 49- 55: viwlt GGPGCSS elavf CBP3_ORYSA : 122- 128: viwlt GGPGCSS elavf CBP3_WHEAT : 122- 128: viwlt GGPGCSS elavf CBPX_ARATH : 135- 141: viwlt GGPGCSS elavf CBPY_CANAL : 178- 184: ilwln GGPGCSS ltglf CBPY_YEAST : 163- 169: ilwln GGPGCSS ltglf CPS1_PENJA : 51- 57: aawfn GGPGCSS miglf KEX1_YEAST : 97- 103: iiwln GGPGCSS mdgal NF31_NAEFO : 67- 73: vmwtn GGPGCSS lggea PRTP_HUMAN : 84- 90: vlwln GGPGCSS ldgll PRTP_MOUSE : 79- 85: vlwln GGPGCSS ldgll SXA2_SCHPO : 107- 113: ivwlq GGPGCAG tlgff VCP_AEDAE : 113- 119: lvwlq GGPGASS lfgmf YBY9_YEAST : 128- 134: ilwln GGPGCSS ftgll C 3: 23.7033 18( 18) G-x(0,1)-E-x(0,2)-S-Y-[AGI]-[EGS]-x(3)-[AP] Occurences: 18(18) CBP1_HORVU : 156- 165: pfyia G-E--SYAGvyvP tlshe CBP1_ORYSA : 192- 201: pfyia G-E--SYAGvyvP tlshe CBP2_HORVU : 154- 163: efyva G-E--SYAGhyvP elsql CBP2_WHEAT : 156- 165: dfyia G-E--SYAGhyvP elsql CBP3_HORVU : 141- 150: dffit G-E--SYAGhyiP afasr CBP3_ORYSA : 214- 223: dffit G-E--SYAGhyiP afasr CBP3_WHEAT : 214- 223: dffit G-E--SYAGhyiP afasr CBPX_ARATH : 227- 236: dfyit G-E--SYAGhyiP afasr CBPY_CANAL : 267- 276: dfhia G-E--SYAGhyiP afase CBPY_YEAST : 255- 264: dfhia G-E--SYAGhyiP vfase CPS1_PENJA : 149- 161: ygghy GpEfaSYIEqqnA aikag KEX1_YEAST : 196- 205: kiils G-E--SYAGqyiP ffana NF31_NAEFO : 161- 170: etyla G-E--SYGGvyvP ttayn PRTP_HUMAN : 176- 185: klflt G-E--SYAGiyiP tlavl PRTP_MOUSE : 171- 180: klflt G-E--SYAGiyiP tlavl SXA2_SCHPO : 198- 207: klylv G-E--SYGSiwsA nfaea VCP_AEDAE : 205- 214: pfyis G-E--SYGGkfvP afgya YBY9_YEAST : 217- 226: dfhia G-E--SYAGhyiP qiahe D 4: 23.0295 18( 18) G-x-S-Y-[AGS]-[DGNST]-x(3)-[ADPST]-x(2)-[AGNSV]-x(2)-[AILV] Occurences: 18(18) CBP1_HORVU : 156- 171: pfyia GeSYAGvyvPtlSheV vkgiq CBP1_ORYSA : 192- 207: pfyia GeSYAGvyvPtlSheV vkglh CBP2_HORVU : 154- 169: efyva GeSYAGhyvPelSqlV hrsgn CBP2_WHEAT : 156- 171: dfyia GeSYAGhyvPelSqlV hrskn CBP3_HORVU : 141- 156: dffit GeSYAGhyiPafAsrV hqgnk CBP3_ORYSA : 214- 229: dffit GeSYAGhyiPafAsrV hqgnk CBP3_WHEAT : 214- 229: dffit GeSYAGhyiPafAsrV hqgnk CBPX_ARATH : 227- 242: dfyit GeSYAGhyiPafAsrV hkgnk CBPY_CANAL : 267- 282: dfhia GeSYAGhyiPafAseI lthpe CBPY_YEAST : 255- 270: dfhia GeSYAGhyiPvfAseI lshkd CPS1_PENJA : 100- 115: qpigv GfSYGTddvTstVtaA pyvwn KEX1_YEAST : 196- 211: kiils GeSYAGqyiPffAnaI lnhnk NF31_NAEFO : 161- 176: etyla GeSYGGvyvPttAynI vegng PRTP_HUMAN : 176- 191: klflt GeSYAGiyiPtlAvlV mqdps PRTP_MOUSE : 171- 186: klflt GeSYAGiyiPtlAvlV mqdps SXA2_SCHPO : 198- 213: klylv GeSYGSiwsAnfAeaL lseps VCP_AEDAE : 205- 220: pfyis GeSYGGkfvPafGyaI hnsqs YBY9_YEAST : 217- 232: dfhia GeSYAGhyiPqiAheI vvknp E 5: 22.1878 18( 18) G-P-G-[AC]-[AS]-[GS] Occurences: 18(18) CBP1_HORVU : 59- 64: lwlng GPGCSS fdgfv CBP1_ORYSA : 95- 100: lwlng GPGCSS fdgfv CBP2_HORVU : 60- 65: lwlng GPGCSS vayga CBP2_WHEAT : 62- 67: lwlng GPGCSS vayga CBP3_HORVU : 50- 55: iwltg GPGCSS elavf CBP3_ORYSA : 123- 128: iwltg GPGCSS elavf CBP3_WHEAT : 123- 128: iwltg GPGCSS elavf CBPX_ARATH : 136- 141: iwltg GPGCSS elavf CBPY_CANAL : 179- 184: lwlng GPGCSS ltglf CBPY_YEAST : 164- 169: lwlng GPGCSS ltglf CPS1_PENJA : 52- 57: awfng GPGCSS miglf KEX1_YEAST : 98- 103: iwlng GPGCSS mdgal NF31_NAEFO : 68- 73: mwtng GPGCSS lggea PRTP_HUMAN : 85- 90: lwlng GPGCSS ldgll PRTP_MOUSE : 80- 85: lwlng GPGCSS ldgll SXA2_SCHPO : 108- 113: vwlqg GPGCAG tlgff VCP_AEDAE : 114- 119: vwlqg GPGASS lfgmf YBY9_YEAST : 129- 134: lwlng GPGCSS ftgll F 6: 19.9017 18( 18) S-x(2)-G-x(0,1)-Y-x-[NPT]-x(2)-[AES]-x(2)-[GIV] Occurences: 18(18) CBP1_HORVU : 158- 171: yiage SyaGvYvPtlSheV vkgiq CBP1_ORYSA : 194- 207: yiage SyaGvYvPtlSheV vkglh CBP2_HORVU : 156- 169: yvage SyaGhYvPelSqlV hrsgn CBP2_WHEAT : 158- 171: yiage SyaGhYvPelSqlV hrskn CBP3_HORVU : 143- 156: fitge SyaGhYiPafAsrV hqgnk CBP3_ORYSA : 216- 229: fitge SyaGhYiPafAsrV hqgnk CBP3_WHEAT : 216- 229: fitge SyaGhYiPafAsrV hqgnk CBPX_ARATH : 229- 242: yitge SyaGhYiPafAsrV hkgnk CBPY_CANAL : 269- 282: hiage SyaGhYiPafAseI lthpe CBPY_YEAST : 257- 270: hiage SyaGhYiPvfAseI lshkd CPS1_PENJA : 143- 156: aifte SygGhYgPefAsyI eqqna KEX1_YEAST : 198- 211: ilsge SyaGqYiPffAnaI lnhnk NF31_NAEFO : 163- 176: ylage SygGvYvPttAynI vegng PRTP_HUMAN : 178- 191: fltge SyaGiYiPtlAvlV mqdps PRTP_MOUSE : 173- 186: fltge SyaGiYiPtlAvlV mqdps SXA2_SCHPO : 252- 265: wvehi SklGyYfNntSstI seefk VCP_AEDAE : 167- 179: fsftd SdeG-YsTneEhvG enlmk YBY9_YEAST : 219- 232: hiage SyaGhYiPqiAheI vvknp G 7: 19.2597 18( 18) S-x(2,3)-G-x(2)-[AGIV]-P-x(2)-[ADGS]-x(2)-[IMV] Occurences: 18(18) CBP1_HORVU : 158- 171: yiage Sya-GvyVPtlSheV vkgiq CBP1_ORYSA : 194- 207: yiage Sya-GvyVPtlSheV vkglh CBP2_HORVU : 156- 169: yvage Sya-GhyVPelSqlV hrsgn CBP2_WHEAT : 158- 171: yiage Sya-GhyVPelSqlV hrskn CBP3_HORVU : 143- 156: fitge Sya-GhyIPafAsrV hqgnk CBP3_ORYSA : 216- 229: fitge Sya-GhyIPafAsrV hqgnk CBP3_WHEAT : 216- 229: fitge Sya-GhyIPafAsrV hqgnk CBPX_ARATH : 229- 242: yitge Sya-GhyIPafAsrV hkgnk CBPY_CANAL : 269- 282: hiage Sya-GhyIPafAseI lthpe CBPY_YEAST : 257- 270: hiage Sya-GhyIPvfAseI lshkd CPS1_PENJA : 143- 156: aifte Syg-GhyGPefAsyI eqqna KEX1_YEAST : 198- 211: ilsge Sya-GqyIPffAnaI lnhnk NF31_NAEFO : 163- 176: ylage Syg-GvyVPttAynI vegng PRTP_HUMAN : 178- 191: fltge Sya-GiyIPtlAvlV mqdps PRTP_MOUSE : 173- 186: fltge Sya-GiyIPtlAvlV mqdps SXA2_SCHPO : 482- 496: laftl SnsvGhmAPskDpqM vrewl VCP_AEDAE : 207- 220: yisge Syg-GkfVPafGyaI hnsqs YBY9_YEAST : 219- 232: hiage Sya-GhyIPqiAheI vvknp H 8: 19.2597 18( 18) S-x(1,2)-G-x(2)-[AGIV]-P-x(2)-[ADGS]-x(2)-[IMV] Occurences: 18(18) CBP1_HORVU : 158- 171: yiage SyaGvyVPtlSheV vkgiq CBP1_ORYSA : 194- 207: yiage SyaGvyVPtlSheV vkglh CBP2_HORVU : 156- 169: yvage SyaGhyVPelSqlV hrsgn CBP2_WHEAT : 158- 171: yiage SyaGhyVPelSqlV hrskn CBP3_HORVU : 143- 156: fitge SyaGhyIPafAsrV hqgnk CBP3_ORYSA : 216- 229: fitge SyaGhyIPafAsrV hqgnk CBP3_WHEAT : 216- 229: fitge SyaGhyIPafAsrV hqgnk CBPX_ARATH : 229- 242: yitge SyaGhyIPafAsrV hkgnk CBPY_CANAL : 269- 282: hiage SyaGhyIPafAseI lthpe CBPY_YEAST : 257- 270: hiage SyaGhyIPvfAseI lshkd CPS1_PENJA : 143- 156: aifte SygGhyGPefAsyI eqqna KEX1_YEAST : 198- 211: ilsge SyaGqyIPffAnaI lnhnk NF31_NAEFO : 163- 176: ylage SygGvyVPttAynI vegng PRTP_HUMAN : 178- 191: fltge SyaGiyIPtlAvlV mqdps PRTP_MOUSE : 173- 186: fltge SyaGiyIPtlAvlV mqdps SXA2_SCHPO : 484- 496: ftlsn Sv-GhmAPskDpqM vrewl VCP_AEDAE : 207- 220: yisge SygGkfVPafGyaI hnsqs YBY9_YEAST : 219- 232: hiage SyaGhyIPqiAheI vvknp I 9: 18.3820 21( 18) G-[PTV]-G-x-S-x(2)-[ADNQST]-[ADEGST] Occurences: 21(18) CBP1_HORVU : 59- 67: lwlng GPGcSsfDG fvyeh CBP1_ORYSA : 95- 103: lwlng GPGcSsfDG fvyeh CBP2_HORVU : 107- 115: ldspa GVGfSytNT ssdiy CBP2_WHEAT : 109- 117: ldspa GVGfSytNT ssdiy CBP3_HORVU : 95- 103: vdqpt GTGfSysSD drdtr CBP3_ORYSA : 168- 176: vdqpt GTGfSysSD drdtr CBP3_WHEAT : 168- 176: vdpat GTGfSysSD drdtr CBPX_ARATH : 181- 189: vdqpv GTGfSytTD ksdir CBPY_CANAL : 179- 187: lwlng GPGcSslTG lffel CBPY_YEAST : 164- 172: lwlng GPGcSslTG lffel CPS1_PENJA : 98- 106: idqpi GVGfSygTD dvtst KEX1_YEAST : 98- 106: iwlng GPGcSsmDG alves NF31_NAEFO : 114- 122: ieqpv GVGfSysNS tddyq PRTP_HUMAN : 85- 93: lwlng GPGcSslDG llteh PRTP_HUMAN : 131- 139: lespa GVGfSysDD kfyat PRTP_MOUSE : 80- 88: lwlng GPGcSslDG llteh PRTP_MOUSE : 126- 134: iespa GVGfSysDD kmyvt SXA2_SCHPO : 154- 162: ldqpf GTGySqgQA ayttt VCP_AEDAE : 159- 167: idnpv GTGfSftDS degys YBY9_YEAST : 129- 137: lwlng GPGcSsfTG llfel YBY9_YEAST : 174- 182: leqpl GVGfSygDE kvsst J 10: 16.9394 27( 18) L-x(2)-[GNP]-x-G-x(2,3)-S-x(2)-[ADGQ] Occurences: 27(18) CBP1_HORVU : 54- 66: kdpvv LwlNgGpgcSsfD gfvye CBP1_HORVU : 56- 67: pvvlw LngGpGcs-SfdG fvyeh CBP1_ORYSA : 90- 102: kdplv LwlNgGpgcSsfD gfvye CBP1_ORYSA : 92- 103: plvlw LngGpGcs-SfdG fvyeh CBP2_HORVU : 55- 67: paplv LwlNgGpgcSsvA ygase CBP2_WHEAT : 57- 69: paplv LwlNgGpgcSsvA ygase CBP3_HORVU : 47- 58: pvviw LtgGpGcs-SelA vfyen CBP3_ORYSA : 120- 131: pvviw LtgGpGcs-SelA vfyen CBP3_WHEAT : 120- 131: pvviw LtgGpGcs-SelA vfyen CBPX_ARATH : 133- 144: pvviw LtgGpGcs-SelA vfyen CBPY_CANAL : 176- 187: pvilw LngGpGcs-SltG lffel CBPY_YEAST : 161- 172: pvilw LngGpGcs-SltG lffel CPS1_PENJA : 178- 190: vniva LgvNnGwidStiQ ekayi KEX1_YEAST : 95- 106: pliiw LngGpGcs-SmdG alves KEX1_YEAST : 122- 134: nsdgk LylNeGswiSkgD llfid NF31_NAEFO : 22- 33: tqlpg LsgNiGvk-SytG yllan PRTP_HUMAN : 80- 92: nspvv LwlNgGpgcSslD gllte PRTP_HUMAN : 82- 93: pvvlw LngGpGcs-SldG llteh PRTP_HUMAN : 126- 138: anvly LesPaGvgfSysD dkfya PRTP_HUMAN : 202- 213: mnlqg LavGnGls-SyeQ ndnsl PRTP_MOUSE : 75- 87: nspvv LwlNgGpgcSslD gllte PRTP_MOUSE : 77- 88: pvvlw LngGpGcs-SldG llteh PRTP_MOUSE : 197- 208: mnlqg LavGnGla-SyeQ ndnsl SXA2_SCHPO : 149- 161: anmlw LdqPfGtgySqgQ aaytt VCP_AEDAE : 111- 122: pilvw LqgGpGas-SlfG mfeen YBY9_YEAST : 126- 137: piilw LngGpGcs-SftG llfel YBY9_YEAST : 169- 181: asmif LeqPlGvgfSygD ekvss K 11: 16.4717 18( 18) S-x(4,5)-Y-[AGIV]-P-x(2)-[ANSV] Occurences: 18(18) CBP1_HORVU : 158- 168: yiage Syagv-YVPtlS hevvk CBP1_ORYSA : 194- 204: yiage Syagv-YVPtlS hevvk CBP2_HORVU : 156- 166: yvage Syagh-YVPelS qlvhr CBP2_WHEAT : 158- 168: yiage Syagh-YVPelS qlvhr CBP3_HORVU : 143- 153: fitge Syagh-YIPafA srvhq CBP3_ORYSA : 216- 226: fitge Syagh-YIPafA srvhq CBP3_WHEAT : 216- 226: fitge Syagh-YIPafA srvhq CBPX_ARATH : 229- 239: yitge Syagh-YIPafA srvhk CBPY_CANAL : 269- 279: hiage Syagh-YIPafA seilt CBPY_YEAST : 257- 267: hiage Syagh-YIPvfA seils CPS1_PENJA : 143- 153: aifte Syggh-YGPefA syieq KEX1_YEAST : 198- 208: ilsge Syagq-YIPffA nailn NF31_NAEFO : 163- 173: ylage Syggv-YVPttA ynive PRTP_HUMAN : 178- 188: fltge Syagi-YIPtlA vlvmq PRTP_MOUSE : 173- 183: fltge Syagi-YIPtlA vlvmq SXA2_SCHPO : 86- 96: ansdk Slfyt-YAPavV dsetf VCP_AEDAE : 89- 100: dakhn SnlffwYVPakN nreqa YBY9_YEAST : 219- 229: hiage Syagh-YIPqiA heivv L 12: 16.1802 19( 18) E-S-Y-x(0,1)-G Occurences: 19(18) CBP1_HORVU : 157- 161: fyiag ESYaG vyvpt CBP1_ORYSA : 193- 197: fyiag ESYaG vyvpt CBP2_HORVU : 155- 159: fyvag ESYaG hyvpe CBP2_WHEAT : 157- 161: fyiag ESYaG hyvpe CBP3_HORVU : 142- 146: ffitg ESYaG hyipa CBP3_ORYSA : 215- 219: ffitg ESYaG hyipa CBP3_WHEAT : 215- 219: ffitg ESYaG hyipa CBPX_ARATH : 228- 232: fyitg ESYaG hyipa CBPY_CANAL : 268- 272: fhiag ESYaG hyipa CBPY_YEAST : 256- 260: fhiag ESYaG hyipv CPS1_PENJA : 142- 145: faift ESY-G ghygp CPS1_PENJA : 142- 146: faift ESYgG hygpe KEX1_YEAST : 197- 201: iilsg ESYaG qyipf NF31_NAEFO : 162- 165: tylag ESY-G gvyvp NF31_NAEFO : 162- 166: tylag ESYgG vyvpt PRTP_HUMAN : 177- 181: lfltg ESYaG iyipt PRTP_MOUSE : 172- 176: lfltg ESYaG iyipt SXA2_SCHPO : 199- 202: lylvg ESY-G siwsa VCP_AEDAE : 75- 79: mlssv ESYsG fmtvd VCP_AEDAE : 206- 209: fyisg ESY-G gkfvp VCP_AEDAE : 206- 210: fyisg ESYgG kfvpa YBY9_YEAST : 218- 222: fhiag ESYaG hyipq M 13: 16.1802 20( 18) G-x-S-Y-x(0,1)-G Occurences: 20(18) CBP1_HORVU : 156- 161: pfyia GeSYaG vyvpt CBP1_ORYSA : 192- 197: pfyia GeSYaG vyvpt CBP2_HORVU : 154- 159: efyva GeSYaG hyvpe CBP2_WHEAT : 156- 161: dfyia GeSYaG hyvpe CBP3_HORVU : 141- 146: dffit GeSYaG hyipa CBP3_ORYSA : 214- 219: dffit GeSYaG hyipa CBP3_WHEAT : 214- 219: dffit GeSYaG hyipa CBPX_ARATH : 227- 232: dfyit GeSYaG hyipa CBPY_CANAL : 267- 272: dfhia GeSYaG hyipa CBPY_YEAST : 211- 216: qpvnv GfSYsG ssgvs CBPY_YEAST : 255- 260: dfhia GeSYaG hyipv CPS1_PENJA : 100- 104: qpigv GfSY-G tddvt KEX1_YEAST : 196- 201: kiils GeSYaG qyipf NF31_NAEFO : 161- 165: etyla GeSY-G gvyvp NF31_NAEFO : 161- 166: etyla GeSYgG vyvpt PRTP_HUMAN : 176- 181: klflt GeSYaG iyipt PRTP_MOUSE : 171- 176: klflt GeSYaG iyipt SXA2_SCHPO : 198- 202: klylv GeSY-G siwsa VCP_AEDAE : 205- 209: pfyis GeSY-G gkfvp VCP_AEDAE : 205- 210: pfyis GeSYgG kfvpa YBY9_YEAST : 176- 180: qplgv GfSY-G dekvs YBY9_YEAST : 217- 222: dfhia GeSYaG hyipq N 14: 15.7105 22( 18) G-[GT]-x-G-x(2)-S Occurences: 22(18) CBP1_HORVU : 58- 64: vlwln GGpGcsS fdgfv CBP1_ORYSA : 94- 100: vlwln GGpGcsS fdgfv CBP2_HORVU : 59- 65: vlwln GGpGcsS vayga CBP2_WHEAT : 61- 67: vlwln GGpGcsS vayga CBP3_HORVU : 49- 55: viwlt GGpGcsS elavf CBP3_HORVU : 222- 228: aiklc GTnGkaS cmaay CBP3_ORYSA : 122- 128: viwlt GGpGcsS elavf CBP3_ORYSA : 295- 301: aiklc GTnGkaS cmaay CBP3_WHEAT : 122- 128: viwlt GGpGcsS elavf CBP3_WHEAT : 295- 301: aiklc GTdGkaS cmaay CBPX_ARATH : 135- 141: viwlt GGpGcsS elavf CBPX_ARATH : 308- 314: siklc GTdGttS clasy CBPY_CANAL : 178- 184: ilwln GGpGcsS ltglf CBPY_YEAST : 163- 169: ilwln GGpGcsS ltglf CPS1_PENJA : 51- 57: aawfn GGpGcsS miglf KEX1_YEAST : 97- 103: iiwln GGpGcsS mdgal NF31_NAEFO : 67- 73: vmwtn GGpGcsS lggea PRTP_HUMAN : 84- 90: vlwln GGpGcsS ldgll PRTP_MOUSE : 79- 85: vlwln GGpGcsS ldgll SXA2_SCHPO : 113- 119: gpgca GTlGffS engpi VCP_AEDAE : 113- 119: lvwlq GGpGasS lfgmf YBY9_YEAST : 128- 134: ilwln GGpGcsS ftgll O 15: 15.2078 25( 18) L-x(5)-G-x(1,2)-G-x(2)-[DS] Occurences: 25(18) CBP1_HORVU : 204- 215: fdgna LvpfahGm-GliS deiyq CBP1_ORYSA : 88- 100: pakdp LvlwlnGgpGcsS fdgfv CBP2_HORVU : 53- 65: aqpap LvlwlnGgpGcsS vayga CBP2_HORVU : 179- 190: npvin LkgfmvGn-GliD dyhdy CBP2_WHEAT : 55- 67: aqpap LvlwlnGgpGcsS vayga CBP2_WHEAT : 181- 192: npvin LkgfmvGn-GliD dyhdy CBP3_HORVU : 170- 181: gthin LkgfaiGn-GltD paiqy CBP3_ORYSA : 46- 58: irsln LlpkeaGptGagD vpsva CBP3_ORYSA : 243- 254: gihin LkgfaiGn-GltD paiqy CBP3_WHEAT : 243- 254: gthin LkgfaiGn-GltD paiqy CBPX_ARATH : 256- 267: gvhin LkgfaiGn-GltD palqy CBPX_ARATH : 302- 314: vplce LsiklcGtdGttS clasy CBPY_CANAL : 292- 303: ernfn LtsvliGn-GltD plvqy CBPY_YEAST : 280- 291: drnfn LtsvliGn-GltD pltqy CPS1_PENJA : 45- 57: pqqap LaawfnGgpGcsS miglf KEX1_YEAST : 91- 103: nvdrp LiiwlnGgpGcsS mdgal KEX1_YEAST : 227- 238: gdtyd LkalliGn-GwiD pntqs NF31_NAEFO : 61- 73: psqdp LvmwtnGgpGcsS lggea NF31_NAEFO : 190- 201: qpyvn LvgilvGn-GvtD aeads PRTP_HUMAN : 199- 210: dpsmn LqglavGn-GlsS yeqnd PRTP_MOUSE : 194- 205: dpsmn LqglavGn-GlaS yeqnd SXA2_SCHPO : 219- 230: lseps LninfmGv-GivS gltad VCP_AEDAE : 108- 119: eqapi LvwlqgGp-GasS lfgmf VCP_AEDAE : 231- 242: qpkin LqglaiGd-GytD plnql YBY9_YEAST : 243- 254: ertfn LtsvmiGn-GitD pliqa P 16: 14.6802 20( 18) P-x(1,3)-G-x-G-x(1,3)-S Occurences: 20(18) CBP1_HORVU : 108- 114: iylds Pa--GvGl--S ysknv CBP1_HORVU : 108- 116: iylds Pa--GvGlsyS knvsd CBP1_HORVU : 206- 215: gnalv PfahGmGli-S deiyq CBP1_ORYSA : 144- 150: iylds Pa--GvGl--S ysknt CBP1_ORYSA : 144- 152: iylds Pa--GvGlsyS kntsd CBP2_HORVU : 105- 111: lflds Pa--GvGf--S ytnts CBP2_WHEAT : 107- 113: lflds Pa--GvGf--S ytnts CBP3_HORVU : 93- 99: ifvdq Pt--GtGf--S yssdd CBP3_HORVU : 93- 101: ifvdq Pt--GtGfsyS sddrd CBP3_ORYSA : 53- 61: pkeag Pt--GaGdvpS vapge CBP3_ORYSA : 166- 172: ifvdq Pt--GtGf--S yssdd CBP3_ORYSA : 166- 174: ifvdq Pt--GtGfsyS sddrd CBP3_WHEAT : 165- 172: iifvd Pat-GtGf--S yssdd CBP3_WHEAT : 165- 174: iifvd Pat-GtGfsyS sddrd CBPX_ARATH : 179- 185: lyvdq Pv--GtGf--S yttdk CBPY_CANAL : 313- 323: yeyye PmacGeGgepS vlepe CBPY_YEAST : 301- 311: ynyye PmacGeGgepS vlpse CPS1_PENJA : 96- 102: iyidq Pi--GvGf--S ygtdd KEX1_YEAST : 141- 147: lfidq Pt--GtGf--S veqnk NF31_NAEFO : 112- 118: lyieq Pv--GvGf--S ysnst NF31_NAEFO : 112- 120: lyieq Pv--GvGfsyS nstdd PRTP_HUMAN : 129- 135: lyles Pa--GvGf--S ysddk PRTP_HUMAN : 129- 137: lyles Pa--GvGfsyS ddkfy PRTP_MOUSE : 124- 130: lyies Pa--GvGf--S ysddk PRTP_MOUSE : 124- 132: lyies Pa--GvGfsyS ddkmy SXA2_SCHPO : 152- 158: lwldq Pf--GtGy--S qgqaa VCP_AEDAE : 157- 163: iyidn Pv--GtGf--S ftdsd YBY9_YEAST : 172- 178: ifleq Pl--GvGf--S ygdek Q 17: 12.0102 28( 18) W-L-x(0,1)-G Occurences: 28(18) CBP1_HORVU : 55- 58: dpvvl WLnG gpgcs CBP1_HORVU : 463- 466: afysr WLaG skl CBP1_ORYSA : 91- 94: dplvl WLnG gpgcs CBP1_ORYSA : 504- 507: afysr WLaG skl CBP2_HORVU : 56- 59: aplvl WLnG gpgcs CBP2_WHEAT : 58- 61: aplvl WLnG gpgcs CBP3_HORVU : 46- 49: dpvvi WLtG gpgcs CBP3_HORVU : 336- 338: dlicn WL-G nsrwv CBP3_ORYSA : 119- 122: dpvvi WLtG gpgcs CBP3_ORYSA : 409- 411: dlicn WL-G nsrwv CBP3_WHEAT : 119- 122: dpvvi WLtG gpgcs CBP3_WHEAT : 409- 411: dlicn WL-G nsrwv CBPX_ARATH : 132- 135: apvvi WLtG gpgcs CBPX_ARATH : 422- 424: dlicn WL-G nsrwv CBPY_CANAL : 175- 178: dpvil WLnG gpgcs CBPY_CANAL : 466- 468: dficn WL-G nqawt CBPY_YEAST : 160- 163: dpvil WLnG gpgcs CBPY_YEAST : 454- 456: dficn WL-G nkawt CPS1_PENJA : 345- 347: dwicn WL-G nyeva KEX1_YEAST : 6- 8: mfynr WL-G twlam KEX1_YEAST : 94- 97: rplii WLnG gpgcs NF31_NAEFO : 269- 271: ydscp WL-G inlqq PRTP_HUMAN : 81- 84: spvvl WLnG gpgcs PRTP_MOUSE : 76- 79: spvvl WLnG gpgcs SXA2_SCHPO : 104- 107: etfiv WLqG gpgca VCP_AEDAE : 110- 113: apilv WLqG gpgas YBY9_YEAST : 125- 128: dpiil WLnG gpgcs YBY9_YEAST : 420- 422: dyicn WL-G nhaws R 18: 12.0102 20( 18) N-G-x(2,3)-D Occurences: 20(18) CBP1_HORVU : 192- 196: gymvg NGvc-D tifdg CBP1_ORYSA : 228- 232: gymvg NGvc-D tvfdg CBP2_HORVU : 186- 190: gfmvg NGli-D dyhdy CBP2_HORVU : 186- 191: gfmvg NGlidD yhdyv CBP2_WHEAT : 188- 192: gfmvg NGli-D dyhdy CBP2_WHEAT : 188- 193: gfmvg NGlidD yhdyv CBP3_HORVU : 177- 181: gfaig NGlt-D paiqy CBP3_ORYSA : 250- 254: gfaig NGlt-D paiqy CBP3_WHEAT : 250- 254: gfaig NGlt-D paiqy CBPX_ARATH : 263- 267: gfaig NGlt-D palqy CBPY_CANAL : 299- 303: svlig NGlt-D plvqy CBPY_YEAST : 287- 291: svlig NGlt-D pltqy CPS1_PENJA : 182- 186: algvn NGwi-D stiqe KEX1_YEAST : 84- 88: tnnds NGnv-D rplii KEX1_YEAST : 234- 238: allig NGwi-D pntqs KEX1_YEAST : 401- 405: eivlf NGdk-D licnn NF31_NAEFO : 197- 201: gilvg NGvt-D aeads PRTP_HUMAN : 396- 400: qilly NGdv-D macnf PRTP_MOUSE : 390- 394: qilly NGdv-D macnf SXA2_SCHPO : 468- 473: slett NGftlD ernla VCP_AEDAE : 387- 391: rvlfy NGql-D iicay YBY9_YEAST : 250- 254: svmig NGit-D pliqa S 19: 12.0102 23( 18) S-Y-x(0,1)-G Occurences: 23(18) CBP1_HORVU : 158- 161: yiage SYaG vyvpt CBP1_ORYSA : 194- 197: yiage SYaG vyvpt CBP2_HORVU : 156- 159: yvage SYaG hyvpe CBP2_WHEAT : 158- 161: yiage SYaG hyvpe CBP3_HORVU : 143- 146: fitge SYaG hyipa CBP3_ORYSA : 216- 219: fitge SYaG hyipa CBP3_WHEAT : 216- 219: fitge SYaG hyipa CBPX_ARATH : 229- 232: yitge SYaG hyipa CBPY_CANAL : 269- 272: hiage SYaG hyipa CBPY_YEAST : 213- 216: vnvgf SYsG ssgvs CBPY_YEAST : 257- 260: hiage SYaG hyipv CPS1_PENJA : 102- 104: igvgf SY-G tddvt CPS1_PENJA : 143- 145: aifte SY-G ghygp CPS1_PENJA : 143- 146: aifte SYgG hygpe KEX1_YEAST : 198- 201: ilsge SYaG qyipf NF31_NAEFO : 30- 33: nigvk SYtG yllan NF31_NAEFO : 163- 165: ylage SY-G gvyvp NF31_NAEFO : 163- 166: ylage SYgG vyvpt PRTP_HUMAN : 178- 181: fltge SYaG iyipt PRTP_MOUSE : 173- 176: fltge SYaG iyipt SXA2_SCHPO : 200- 202: ylvge SY-G siwsa VCP_AEDAE : 76- 79: lssve SYsG fmtvd VCP_AEDAE : 207- 209: yisge SY-G gkfvp VCP_AEDAE : 207- 210: yisge SYgG kfvpa YBY9_YEAST : 178- 180: lgvgf SY-G dekvs YBY9_YEAST : 219- 222: hiage SYaG hyipq T 20: 12.0102 24( 18) S-x(1,2)-G-x(3)-P Occurences: 24(18) CBP1_HORVU : 158- 165: yiage SyaGvyvP tlshe CBP1_ORYSA : 194- 201: yiage SyaGvyvP tlshe CBP2_HORVU : 156- 163: yvage SyaGhyvP elsql CBP2_HORVU : 259- 266: pvcni SstGsydP ctery CBP2_HORVU : 260- 266: vcnis St-GsydP ctery CBP2_WHEAT : 158- 165: yiage SyaGhyvP elsql CBP2_WHEAT : 262- 269: vcnit SstGsydP ctery CBP2_WHEAT : 263- 269: cnits St-GsydP ctery CBP3_HORVU : 143- 150: fitge SyaGhyiP afasr CBP3_ORYSA : 216- 223: fitge SyaGhyiP afasr CBP3_WHEAT : 216- 223: fitge SyaGhyiP afasr CBPX_ARATH : 229- 236: yitge SyaGhyiP afasr CBPY_CANAL : 269- 276: hiage SyaGhyiP afase CBPY_YEAST : 257- 264: hiage SyaGhyiP vfase CPS1_PENJA : 143- 150: aifte SygGhygP efasy KEX1_YEAST : 198- 205: ilsge SyaGqyiP ffana KEX1_YEAST : 329- 335: kdsyp Sc-GmnwP kdisf NF31_NAEFO : 163- 170: ylage SygGvyvP ttayn PRTP_HUMAN : 24- 30: lvswa Sr-GeaaP dqdei PRTP_HUMAN : 178- 185: fltge SyaGiyiP tlavl PRTP_MOUSE : 173- 180: fltge SyaGiyiP tlavl SXA2_SCHPO : 484- 490: ftlsn Sv-GhmaP skdpq VCP_AEDAE : 207- 214: yisge SygGkfvP afgya YBY9_YEAST : 219- 226: hiage SyaGhyiP qiahe Number of patterns evaluated by Pratt:5009 Total running time: 10 seconds