------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 59 sequences from file CARBOXYLESTERASE_B_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 59 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 28 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CARBOXYLESTERASE_B_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ACE1_CAEEL 620 ACES_BOVIN 583 ACES_CHICK 767 ACES_DROME 649 ACES_HUMAN 614 ACES_MOUSE 614 ACES_RAT 614 ACES_TORCA 586 ACES_TORMA 590 BAL_BOVIN 597 BAL_HUMAN 742 BAL_RAT 612 CHLE_BOVIN 141 CHLE_CANFA 141 CHLE_HUMAN 602 CHLE_MACMU 141 CHLE_MOUSE 603 CHLE_PIG 141 CHLE_RABIT 581 CHLE_SHEEP 141 CRYS_DICDI 550 D2_DICDI 535 EST1_CAEBR 562 EST1_CAEEL 562 EST1_CULPI 540 EST1_HUMAN 567 EST1_MOUSE 156 EST1_RABIT 539 EST1_RAT 549 EST2_CAEEL 556 EST2_CULPI 215 EST2_RABIT 532 EST4_DROMO 40 EST5_DROMO 38 EST6_DROME 544 ESTA_DROPS 544 ESTB_DROPS 545 ESTC_DROPS 545 ESTE_MYZPE 552 ESTF_MYZPE 564 ESTJ_HELVI 564 ESTJ_MANSE 15 ESTP_DROME 544 ESTP_RAT 565 ESTS_DROVI 542 EST_MOUSE 554 JHEA_TRINI 109 JHEB_TRINI 63 LIP1_CANRU 549 LIP1_GEOCN 563 LIP2_CANRU 548 LIP2_GEOCN 563 LIP3_CANRU 549 LIP4_CANRU 549 LIP5_CANRU 549 PCD_ARTOX 493 PMCH_RAT 64 PNBA_BACSU 489 SASB_ANAPL 557 Pratt run started at Thu Feb 6 19:04:22 1997 No patterns found