------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file CAP_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CAP_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CAP1_HUMAN 475 CAP2_HUMAN 477 CAP_CHLVR 481 CAP_MOUSE 474 CAP_PIG 233 CAP_RAT 474 CAP_SCHPO 551 CAP_YEAST 526 Pratt run started at Thu Feb 6 19:04:08 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 44.8706 8( 8) F-A-x(4)-G-x(0,1)-E-x(1,2)-T-x(2)-L-x(2)-V-x(5)-T-x-K-N-P 2: 40.7005 8( 8) A-x(4)-G-x(0,1)-E-x(1,2)-T-x(2)-L-x(2)-V-x(5)-T-x-K-N-P 3: 36.5305 8( 8) G-x(0,1)-E-x(1,2)-T-x(2)-L-x(2)-V-x(5)-T-x-K-N-P 4: 27.6904 12( 8) G-x(0,1)-D-x(2,4)-E-x(3)-P-E-Q-x-K 5: 27.6904 12( 8) G-x(0,2)-D-x(2,3)-E-x(3)-P-E-Q-x-K 6: 24.5203 8( 8) D-x(1,2)-E-x(3)-P-E-Q-x-K 7: 24.5203 8( 8) L-x(1,2)-V-x(5)-T-x-K-N-P 8: 20.8503 8( 8) E-x(3)-P-E-Q-x-K 9: 20.8503 8( 8) V-x(5)-T-x-K-N-P 10: 20.3503 8( 8) D-x(3,4)-T-x-K-N-P 11: 19.8503 8( 8) D-x(1,2)-E-x(0,1)-P-x-P-x(3)-K 12: 19.8503 8( 8) E-x(1,2)-T-x(2)-L-x(2)-V-x(0,1)-D 13: 19.3503 8( 8) T-x(2)-L-x(2)-V-x(0,1)-D-x(0,2)-K 14: 16.6802 8( 8) P-E-Q-x-K 15: 16.6802 8( 8) T-x-K-N-P 16: 16.6802 9( 8) E-x(2)-T-x(2)-L-x(2)-V 17: 16.1802 8( 8) E-x(0,1)-P-x-P-x(3)-K 18: 16.1802 8( 8) I-x-I-x(2,3)-D-G 19: 16.1802 15( 8) G-x(2)-P-x-P-x(1,2)-P 20: 16.1802 29( 8) P-x(3,4)-P-x-P-x-P Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 86.2062 8( 8) F-A-[EQ]-[IL]-x(2)-G-x(0,1)-E-x(1,2)-T-x-[AG]-L-[KR]-[HK]-V-[ADST]-[DK]-[DS]-x(2)-T-[HY]-K-N-P-[AENS]-x-[KR]-x-[QST]-[GPS]-[GPT] B 2: 82.0361 8( 8) A-[EQ]-[IL]-x(2)-G-x(0,1)-E-x(1,2)-T-x-[AG]-L-[KR]-[HK]-V-[ADST]-[DK]-[DS]-x(2)-T-[HY]-K-N-P-[AENS]-x-[KR]-x-[QST]-[GPS]-[GPT] C 3: 71.3975 8( 8) G-x(0,1)-E-x(1,2)-T-x-[AG]-L-[KR]-[HK]-V-[ADST]-[DK]-[DS]-x(2)-T-[HY]-K-N-P-[AENS]-x-[KR]-x-[QST]-[GPS]-[GPT] D 4: 49.6737 8( 8) L-x(1,2)-V-[ADST]-[DK]-[DS]-x(2)-T-[HY]-K-N-P-[AENS]-x-[KR]-x-[QST]-[GPS]-[GPT] E 5: 46.0036 8( 8) V-[ADST]-[DK]-[DS]-x(2)-T-[HY]-K-N-P-[AENS]-x-[KR]-x-[QST]-[GPS]-[GPT] F 6: 39.2594 8( 8) E-x(1,2)-T-x-[AG]-L-[KR]-[HK]-V-x(0,1)-D-[DK]-x(4)-[HK]-x-[NP] G 7: 38.0997 8( 8) T-x-[AG]-L-[KR]-[HK]-V-x(0,1)-D-x(0,2)-K-[ST]-x(2)-[NT]-x(4)-[AEN] H 8: 36.8782 8( 8) D-x(3,4)-T-[HY]-K-N-P-[AENS]-x-[KR]-x-[QST]-[GPS]-[GPT] I 9: 36.2448 12( 8) G-x(0,1)-D-x(2,4)-E-x-[AP]-[ILV]-P-E-Q-x-K-x(3)-[ADN] J 10: 36.2448 12( 8) G-x(0,2)-D-x(2,3)-E-x-[AP]-[ILV]-P-E-Q-x-K-x(3)-[ADN] K 11: 33.2082 8( 8) T-[HY]-K-N-P-[AENS]-x-[KR]-x-[QST]-[GPS]-[GPT] L 12: 33.0748 8( 8) D-x(1,2)-E-x-[AP]-[ILV]-P-E-Q-x-K-x(3)-[ADN] M 13: 32.9772 8( 8) D-x(1,2)-E-x(0,1)-P-[AILV]-P-[AE]-[DQ]-x-K-x(3)-[ADGN]-[ADGP] N 14: 29.6049 8( 8) E-[AEGS]-[AIV]-T-x(2)-L-[EKR]-x-V-[ADST]-x(4)-[GT] O 15: 29.4047 8( 8) E-x-[AP]-[ILV]-P-E-Q-x-K-x(3)-[ADN] P 16: 29.3071 8( 8) E-x(0,1)-P-[AILV]-P-[AE]-[DQ]-x-K-x(3)-[ADGN]-[ADGP] Q 17: 21.5009 8( 8) I-x-I-x(2,3)-D-G-x(4)-[FIL]-[NPS] R 18: 19.3517 8( 8) P-E-Q-x-K-x(3)-[ADN] S 19: 18.8014 27( 8) P-x(3,4)-P-[GPS]-P-x-P T 20: 16.1802 15( 8) G-x(2)-P-x-P-x(1,2)-P Best patterns with alignements: fitness hits(seqs) Pattern A 1: 86.2062 8( 8) F-A-[EQ]-[IL]-x(2)-G-x(0,1)-E-x(1,2)-T-x-[AG]-L-[KR]-[HK]-V-[ADST]-[DK]-[DS]-x(2)-T-[HY]-K-N-P-[AENS]-x-[KR]-x-[QST]-[GPS]-[GPT] Occurences: 8(8) CAP1_HUMAN : 258- 291: srsal FAQInqG-EsiThALKHVSDDmkTHKNPAlKaQSG pvrsg CAP2_HUMAN : 264- 297: srsal FAQLnqG-EaiTkGLRHVTDDqkTYKNPSlRaQGG qtqsp CAP_CHLVR : 260- 293: srsql FAQLskGsEv-TaGLKKVTDDmkTHKNPElRnQPP lkssa CAP_MOUSE : 257- 290: srsal FAQInqG-EsiThALKHVSDDmkTHKNPAlKaQSG pvrsg CAP_PIG : 72- 105: ppsal FAQIhqG-EsiThALKHVADDekTHKNPAdKaQSG pvrxg CAP_RAT : 257- 290: srsal FAQInqG-EsiThALKHVSDDmkTHKNPAlKaQSG pvrsg CAP_SCHPO : 338- 371: dmgav FAEInkG-EgiTsGLRKVDKSemTHKNPNlRkTGP tpgpk CAP_YEAST : 311- 344: gigav FAELnqG-EniTkGLKKVDKSqqTHKNPElRqSST vsstg B 2: 82.0361 8( 8) A-[EQ]-[IL]-x(2)-G-x(0,1)-E-x(1,2)-T-x-[AG]-L-[KR]-[HK]-V-[ADST]-[DK]-[DS]-x(2)-T-[HY]-K-N-P-[AENS]-x-[KR]-x-[QST]-[GPS]-[GPT] Occurences: 8(8) CAP1_HUMAN : 259- 291: rsalf AQInqG-EsiThALKHVSDDmkTHKNPAlKaQSG pvrsg CAP2_HUMAN : 265- 297: rsalf AQLnqG-EaiTkGLRHVTDDqkTYKNPSlRaQGG qtqsp CAP_CHLVR : 261- 293: rsqlf AQLskGsEv-TaGLKKVTDDmkTHKNPElRnQPP lkssa CAP_MOUSE : 258- 290: rsalf AQInqG-EsiThALKHVSDDmkTHKNPAlKaQSG pvrsg CAP_PIG : 73- 105: psalf AQIhqG-EsiThALKHVADDekTHKNPAdKaQSG pvrxg CAP_RAT : 258- 290: rsalf AQInqG-EsiThALKHVSDDmkTHKNPAlKaQSG pvrsg CAP_SCHPO : 339- 371: mgavf AEInkG-EgiTsGLRKVDKSemTHKNPNlRkTGP tpgpk CAP_YEAST : 312- 344: igavf AELnqG-EniTkGLKKVDKSqqTHKNPElRqSST vsstg C 3: 71.3975 8( 8) G-x(0,1)-E-x(1,2)-T-x-[AG]-L-[KR]-[HK]-V-[ADST]-[DK]-[DS]-x(2)-T-[HY]-K-N-P-[AENS]-x-[KR]-x-[QST]-[GPS]-[GPT] Occurences: 8(8) CAP1_HUMAN : 264- 291: aqinq G-EsiThALKHVSDDmkTHKNPAlKaQSG pvrsg CAP2_HUMAN : 270- 297: aqlnq G-EaiTkGLRHVTDDqkTYKNPSlRaQGG qtqsp CAP_CHLVR : 266- 293: aqlsk GsEv-TaGLKKVTDDmkTHKNPElRnQPP lkssa CAP_MOUSE : 263- 290: aqinq G-EsiThALKHVSDDmkTHKNPAlKaQSG pvrsg CAP_PIG : 78- 105: aqihq G-EsiThALKHVADDekTHKNPAdKaQSG pvrxg CAP_RAT : 263- 290: aqinq G-EsiThALKHVSDDmkTHKNPAlKaQSG pvrsg CAP_SCHPO : 344- 371: aeink G-EgiTsGLRKVDKSemTHKNPNlRkTGP tpgpk CAP_YEAST : 317- 344: aelnq G-EniTkGLKKVDKSqqTHKNPElRqSST vsstg D 4: 49.6737 8( 8) L-x(1,2)-V-[ADST]-[DK]-[DS]-x(2)-T-[HY]-K-N-P-[AENS]-x-[KR]-x-[QST]-[GPS]-[GPT] Occurences: 8(8) CAP1_HUMAN : 271- 291: sitha LkhVSDDmkTHKNPAlKaQSG pvrsg CAP2_HUMAN : 277- 297: aitkg LrhVTDDqkTYKNPSlRaQGG qtqsp CAP_CHLVR : 273- 293: evtag LkkVTDDmkTHKNPElRnQPP lkssa CAP_MOUSE : 270- 290: sitha LkhVSDDmkTHKNPAlKaQSG pvrsg CAP_PIG : 85- 105: sitha LkhVADDekTHKNPAdKaQSG pvrxg CAP_RAT : 270- 290: sitha LkhVSDDmkTHKNPAlKaQSG pvrsg CAP_SCHPO : 351- 371: gitsg LrkVDKSemTHKNPNlRkTGP tpgpk CAP_YEAST : 324- 344: nitkg LkkVDKSqqTHKNPElRqSST vsstg E 5: 46.0036 8( 8) V-[ADST]-[DK]-[DS]-x(2)-T-[HY]-K-N-P-[AENS]-x-[KR]-x-[QST]-[GPS]-[GPT] Occurences: 8(8) CAP1_HUMAN : 274- 291: halkh VSDDmkTHKNPAlKaQSG pvrsg CAP2_HUMAN : 280- 297: kglrh VTDDqkTYKNPSlRaQGG qtqsp CAP_CHLVR : 276- 293: aglkk VTDDmkTHKNPElRnQPP lkssa CAP_MOUSE : 273- 290: halkh VSDDmkTHKNPAlKaQSG pvrsg CAP_PIG : 88- 105: halkh VADDekTHKNPAdKaQSG pvrxg CAP_RAT : 273- 290: halkh VSDDmkTHKNPAlKaQSG pvrsg CAP_SCHPO : 354- 371: sglrk VDKSemTHKNPNlRkTGP tpgpk CAP_YEAST : 327- 344: kglkk VDKSqqTHKNPElRqSST vsstg F 6: 39.2594 8( 8) E-x(1,2)-T-x-[AG]-L-[KR]-[HK]-V-x(0,1)-D-[DK]-x(4)-[HK]-x-[NP] Occurences: 8(8) CAP1_HUMAN : 265- 284: qinqg EsiThALKHVsDDmkthKnP alkaq CAP2_HUMAN : 271- 290: qlnqg EaiTkGLRHVtDDqktyKnP slraq CAP_CHLVR : 268- 286: lskgs Ev-TaGLKKVtDDmkthKnP elrnq CAP_MOUSE : 264- 283: qinqg EsiThALKHVsDDmkthKnP alkaq CAP_PIG : 79- 98: qihqg EsiThALKHVaDDekthKnP adkaq CAP_RAT : 264- 283: qinqg EsiThALKHVsDDmkthKnP alkaq CAP_SCHPO : 345- 363: einkg EgiTsGLRKV-DKsemtHkN pnlrk CAP_YEAST : 318- 336: elnqg EniTkGLKKV-DKsqqtHkN pelrq G 7: 38.0997 8( 8) T-x-[AG]-L-[KR]-[HK]-V-x(0,1)-D-x(0,2)-K-[ST]-x(2)-[NT]-x(4)-[AEN] Occurences: 8(8) CAP1_HUMAN : 268- 288: qgesi ThALKHVsDdmKThkNpalkA qsgpv CAP2_HUMAN : 274- 294: qgeai TkGLRHVtDdqKTykNpslrA qggqt CAP_CHLVR : 270- 290: kgsev TaGLKKVtDdmKThkNpelrN qpplk CAP_MOUSE : 267- 287: qgesi ThALKHVsDdmKThkNpalkA qsgpv CAP_PIG : 82- 102: qgesi ThALKHVaDdeKThkNpadkA qsgpv CAP_RAT : 267- 287: qgesi ThALKHVsDdmKThkNpalkA qsgpv CAP_SCHPO : 348- 365: kgegi TsGLRKV-D--KSemThknpN lrktg CAP_YEAST : 321- 338: qgeni TkGLKKV-D--KSqqThknpE lrqss H 8: 36.8782 8( 8) D-x(3,4)-T-[HY]-K-N-P-[AENS]-x-[KR]-x-[QST]-[GPS]-[GPT] Occurences: 8(8) CAP1_HUMAN : 276- 291: lkhvs Ddmk-THKNPAlKaQSG pvrsg CAP2_HUMAN : 282- 297: lrhvt Ddqk-TYKNPSlRaQGG qtqsp CAP_CHLVR : 278- 293: lkkvt Ddmk-THKNPElRnQPP lkssa CAP_MOUSE : 275- 290: lkhvs Ddmk-THKNPAlKaQSG pvrsg CAP_PIG : 90- 105: lkhva Ddek-THKNPAdKaQSG pvrxg CAP_RAT : 275- 290: lkhvs Ddmk-THKNPAlKaQSG pvrsg CAP_SCHPO : 355- 371: glrkv DksemTHKNPNlRkTGP tpgpk CAP_YEAST : 328- 344: glkkv DksqqTHKNPElRqSST vsstg I 9: 36.2448 12( 8) G-x(0,1)-D-x(2,4)-E-x-[AP]-[ILV]-P-E-Q-x-K-x(3)-[ADN] Occurences: 12(8) CAP1_HUMAN : 445- 462: lipte GgDfn--EfPVPEQfKtlwN gqklv CAP1_HUMAN : 446- 462: ipteg G-Dfn--EfPVPEQfKtlwN gqklv CAP2_HUMAN : 448- 464: lipqd G-Dyr--EfPIPEQfKtawD gskli CAP_CHLVR : 450- 466: vmkpd G-Dlt--EyPLPEQfKtvwN patsk CAP_MOUSE : 444- 461: lipte GgDfn--EfPVPEQfKtlwN gqklv CAP_MOUSE : 445- 461: ipteg G-Dfn--EfPVPEQfKtlwN gqklv CAP_PIG : 213- 230: lipte GgDfn--EfPVPEQxKxiwN gqk CAP_PIG : 214- 230: ipteg G-Dfn--EfPVPEQxKxiwN gqk CAP_RAT : 444- 461: lipte GgDfn--EfPVPEQfKtlwN gqklv CAP_RAT : 445- 461: ipteg G-Dfn--EfPVPEQfKtlwN gqklv CAP_SCHPO : 522- 538: vpnee G-Dya--ErAVPEQiKhkvN ekgel CAP_YEAST : 494- 513: vnlpi GeDddyvEfPIPEQmKhsfA dgkfk J 10: 36.2448 12( 8) G-x(0,2)-D-x(2,3)-E-x-[AP]-[ILV]-P-E-Q-x-K-x(3)-[ADN] Occurences: 12(8) CAP1_HUMAN : 445- 462: lipte Gg-Dfn-EfPVPEQfKtlwN gqklv CAP1_HUMAN : 446- 462: ipteg G--Dfn-EfPVPEQfKtlwN gqklv CAP2_HUMAN : 448- 464: lipqd G--Dyr-EfPIPEQfKtawD gskli CAP_CHLVR : 450- 466: vmkpd G--Dlt-EyPLPEQfKtvwN patsk CAP_MOUSE : 444- 461: lipte Gg-Dfn-EfPVPEQfKtlwN gqklv CAP_MOUSE : 445- 461: ipteg G--Dfn-EfPVPEQfKtlwN gqklv CAP_PIG : 213- 230: lipte Gg-Dfn-EfPVPEQxKxiwN gqk CAP_PIG : 214- 230: ipteg G--Dfn-EfPVPEQxKxiwN gqk CAP_RAT : 444- 461: lipte Gg-Dfn-EfPVPEQfKtlwN gqklv CAP_RAT : 445- 461: ipteg G--Dfn-EfPVPEQfKtlwN gqklv CAP_SCHPO : 522- 538: vpnee G--Dya-ErAVPEQiKhkvN ekgel CAP_YEAST : 494- 513: vnlpi GedDdyvEfPIPEQmKhsfA dgkfk K 11: 33.2082 8( 8) T-[HY]-K-N-P-[AENS]-x-[KR]-x-[QST]-[GPS]-[GPT] Occurences: 8(8) CAP1_HUMAN : 280- 291: sddmk THKNPAlKaQSG pvrsg CAP2_HUMAN : 286- 297: tddqk TYKNPSlRaQGG qtqsp CAP_CHLVR : 282- 293: tddmk THKNPElRnQPP lkssa CAP_MOUSE : 279- 290: sddmk THKNPAlKaQSG pvrsg CAP_PIG : 94- 105: addek THKNPAdKaQSG pvrxg CAP_RAT : 279- 290: sddmk THKNPAlKaQSG pvrsg CAP_SCHPO : 360- 371: dksem THKNPNlRkTGP tpgpk CAP_YEAST : 333- 344: dksqq THKNPElRqSST vsstg L 12: 33.0748 8( 8) D-x(1,2)-E-x-[AP]-[ILV]-P-E-Q-x-K-x(3)-[ADN] Occurences: 8(8) CAP1_HUMAN : 447- 462: ptegg DfnEfPVPEQfKtlwN gqklv CAP2_HUMAN : 449- 464: ipqdg DyrEfPIPEQfKtawD gskli CAP_CHLVR : 451- 466: mkpdg DltEyPLPEQfKtvwN patsk CAP_MOUSE : 446- 461: ptegg DfnEfPVPEQfKtlwN gqklv CAP_PIG : 215- 230: ptegg DfnEfPVPEQxKxiwN gqk CAP_RAT : 446- 461: ptegg DfnEfPVPEQfKtlwN gqklv CAP_SCHPO : 523- 538: pneeg DyaErAVPEQiKhkvN ekgel CAP_YEAST : 498- 513: igedd DyvEfPIPEQmKhsfA dgkfk M 13: 32.9772 8( 8) D-x(1,2)-E-x(0,1)-P-[AILV]-P-[AE]-[DQ]-x-K-x(3)-[ADGN]-[ADGP] Occurences: 8(8) CAP1_HUMAN : 447- 463: ptegg DfnEfPVPEQfKtlwNG qklvt CAP2_HUMAN : 449- 465: ipqdg DyrEfPIPEQfKtawDG sklit CAP_CHLVR : 451- 467: mkpdg DltEyPLPEQfKtvwNP atskf CAP_MOUSE : 446- 462: ptegg DfnEfPVPEQfKtlwNG qklvt CAP_PIG : 215- 231: ptegg DfnEfPVPEQxKxiwNG qk CAP_RAT : 446- 462: ptegg DfnEfPVPEQfKtlwNG qklvt CAP_SCHPO : 321- 336: ndfwk DsnE-PAPADnKgdmGA vfaei CAP_YEAST : 498- 514: igedd DyvEfPIPEQmKhsfAD gkfks N 14: 29.6049 8( 8) E-[AEGS]-[AIV]-T-x(2)-L-[EKR]-x-V-[ADST]-x(4)-[GT] Occurences: 8(8) CAP1_HUMAN : 265- 280: qinqg ESIThaLKhVSddmkT hknpa CAP2_HUMAN : 271- 286: qlnqg EAITkgLRhVTddqkT yknps CAP_CHLVR : 9- 24: lvsrl EAVTnrLEaVAsrggG stika CAP_MOUSE : 264- 279: qinqg ESIThaLKhVSddmkT hknpa CAP_PIG : 79- 94: qihqg ESIThaLKhVAddekT hknpa CAP_RAT : 264- 279: qinqg ESIThaLKhVSddmkT hknpa CAP_SCHPO : 345- 360: einkg EGITsgLRkVDksemT hknpn CAP_YEAST : 21- 36: llkrl EEATarLEdVTiyqeG yiqnk O 15: 29.4047 8( 8) E-x-[AP]-[ILV]-P-E-Q-x-K-x(3)-[ADN] Occurences: 8(8) CAP1_HUMAN : 450- 462: ggdfn EfPVPEQfKtlwN gqklv CAP2_HUMAN : 452- 464: dgdyr EfPIPEQfKtawD gskli CAP_CHLVR : 454- 466: dgdlt EyPLPEQfKtvwN patsk CAP_MOUSE : 449- 461: ggdfn EfPVPEQfKtlwN gqklv CAP_PIG : 218- 230: ggdfn EfPVPEQxKxiwN gqk CAP_RAT : 449- 461: ggdfn EfPVPEQfKtlwN gqklv CAP_SCHPO : 526- 538: egdya ErAVPEQiKhkvN ekgel CAP_YEAST : 501- 513: dddyv EfPIPEQmKhsfA dgkfk P 16: 29.3071 8( 8) E-x(0,1)-P-[AILV]-P-[AE]-[DQ]-x-K-x(3)-[ADGN]-[ADGP] Occurences: 8(8) CAP1_HUMAN : 450- 463: ggdfn EfPVPEQfKtlwNG qklvt CAP2_HUMAN : 452- 465: dgdyr EfPIPEQfKtawDG sklit CAP_CHLVR : 454- 467: dgdlt EyPLPEQfKtvwNP atskf CAP_MOUSE : 449- 462: ggdfn EfPVPEQfKtlwNG qklvt CAP_PIG : 218- 231: ggdfn EfPVPEQxKxiwNG qk CAP_RAT : 449- 462: ggdfn EfPVPEQfKtlwNG qklvt CAP_SCHPO : 324- 336: wkdsn E-PAPADnKgdmGA vfaei CAP_YEAST : 501- 514: dddyv EfPIPEQmKhsfAD gkfks Q 17: 21.5009 8( 8) I-x-I-x(2,3)-D-G-x(4)-[FIL]-[NPS] Occurences: 8(8) CAP1_HUMAN : 408- 421: gkvpt IsInktDGchayLS knsld CAP2_HUMAN : 442- 454: ssemn IlIpq-DGdyreFP ipeqf CAP_CHLVR : 412- 425: gfapt IsIektDGaqvfIN pkcle CAP_MOUSE : 407- 420: gkvpt IsInktDGchayLS knsld CAP_PIG : 176- 189: ykvpx IsInkxDGrhiyLS knsld CAP_RAT : 407- 420: gkvpt IsInktDGchayLS knsld CAP_SCHPO : 484- 497: nhvpm IvIdqcDGgsiyLS kssls CAP_YEAST : 458- 471: hslpq IsIdksDGgniyLS kesln R 18: 19.3517 8( 8) P-E-Q-x-K-x(3)-[ADN] Occurences: 8(8) CAP1_HUMAN : 454- 462: nefpv PEQfKtlwN gqklv CAP2_HUMAN : 456- 464: refpi PEQfKtawD gskli CAP_CHLVR : 458- 466: teypl PEQfKtvwN patsk CAP_MOUSE : 453- 461: nefpv PEQfKtlwN gqklv CAP_PIG : 222- 230: nefpv PEQxKxiwN gqk CAP_RAT : 453- 461: nefpv PEQfKtlwN gqklv CAP_SCHPO : 530- 538: aerav PEQiKhkvN ekgel CAP_YEAST : 505- 513: vefpi PEQmKhsfA dgkfk S 19: 18.8014 27( 8) P-x(3,4)-P-[GPS]-P-x-P Occurences: 27(8) CAP1_HUMAN : 230- 239: sagsg PppppPGPpP ppvst CAP1_HUMAN : 231- 239: agsgp Pppp-PGPpP ppvst CAP1_HUMAN : 232- 241: gsgpp PpppgPPPpP vstss CAP1_HUMAN : 233- 241: sgppp Pppg-PPPpP vstss CAP2_HUMAN : 229- 237: vlssg Pglp-PPPpP lpppg CAP2_HUMAN : 234- 243: pglpp PppplPPPgP pplfe CAP2_HUMAN : 235- 243: glppp Pppl-PPPgP pplfe CAP2_HUMAN : 236- 245: lpppp PplppPGPpP lfene CAP2_HUMAN : 237- 245: ppppp Plpp-PGPpP lfene CAP_CHLVR : 226- 235: pvppp PsgfaPPPpP piqap CAP_MOUSE : 229- 238: svgsg PppppPGPpP ppipt CAP_MOUSE : 230- 238: vgsgp Pppp-PGPpP ppipt CAP_MOUSE : 231- 240: gsgpp PpppgPPPpP iptss CAP_MOUSE : 232- 240: sgppp Pppg-PPPpP iptss CAP_MOUSE : 233- 242: gpppp PpgppPPPiP tssgs CAP_MOUSE : 234- 242: ppppp Pgpp-PPPiP tssgs CAP_MOUSE : 304- 312: fsapk Pqts-PSPkP atkke CAP_PIG : 119- 127: fsask Pgis-PSPkP vtkkw CAP_RAT : 229- 238: svgsg PppppPGPpP ppvpt CAP_RAT : 230- 238: vgsgp Pppp-PGPpP ppvpt CAP_RAT : 231- 240: gsgpp PpppgPPPpP vptss CAP_RAT : 232- 240: sgppp Pppg-PPPpP vptss CAP_RAT : 233- 242: gpppp PpgppPPPvP tssgs CAP_RAT : 234- 242: ppppp Pgpp-PPPvP tssgs CAP_RAT : 304- 312: fsapk Pqts-PSPkP atkke CAP_SCHPO : 306- 314: anggl Pppp-PPPpP sndfw CAP_YEAST : 275- 284: sataa PapppPPPaP pasvf T 20: 16.1802 15( 8) G-x(2)-P-x-P-x(1,2)-P Occurences: 15(8) CAP1_HUMAN : 227- 234: sgpsa GsgPpPp-P pgppp CAP1_HUMAN : 227- 235: sgpsa GsgPpPppP gpppp CAP1_HUMAN : 229- 237: psags GppPpPpgP ppppv CAP2_HUMAN : 230- 237: lssgp GlpPpPp-P lpppg CAP_CHLVR : 228- 235: pppps GfaPpPp-P piqap CAP_CHLVR : 228- 236: pppps GfaPpPppP iqapt CAP_MOUSE : 226- 233: sgpsv GsgPpPp-P pgppp CAP_MOUSE : 226- 234: sgpsv GsgPpPppP gpppp CAP_MOUSE : 228- 236: psvgs GppPpPpgP ppppi CAP_MOUSE : 235- 242: ppppp GppPpPi-P tssgs CAP_PIG : 120- 127: saskp GisPsPk-P vtkkw CAP_RAT : 226- 233: sgpsv GsgPpPp-P pgppp CAP_RAT : 226- 234: sgpsv GsgPpPppP gpppp CAP_RAT : 228- 236: psvgs GppPpPpgP ppppv CAP_RAT : 235- 242: ppppp GppPpPv-P tssgs CAP_SCHPO : 303- 310: gdsan GglPpPp-P pppps CAP_SCHPO : 303- 311: gdsan GglPpPppP pppsn CAP_SCHPO : 304- 311: dsang GlpPpPp-P pppsn CAP_SCHPO : 304- 312: dsang GlpPpPppP ppsnd CAP_SCHPO : 370- 377: nlrkt GptPgPk-P kikss CAP_YEAST : 353- 361: tgsks GppPrPkkP stlkt Number of patterns evaluated by Pratt:9226 Total running time: 6 seconds