------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 28 sequences from file CALCITONIN PATTERN CONSERVATION: CM: min Nr of Seqs to Match 28 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CALCITONIN.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CAL0_HUMAN 141 CAL0_RAT 136 CAL1_HUMAN 128 CAL1_ONCKE 136 CAL1_RAT 128 CAL2_HUMAN 127 CAL2_ONCKE 32 CAL2_RAT 134 CAL3_ONCKI 32 CALR_CHICK 125 CAL_ANGJA 32 CAL_BOVIN 32 CAL_CANFA 92 CAL_CHICK 138 CAL_PIG 32 CAL_SHEEP 143 CGRP_PIG 37 CGRP_RANRI 37 CGRP_SHEEP 37 IAPP_CANFA 89 IAPP_CAVPO 92 IAPP_CRIGR 37 IAPP_FELCA 89 IAPP_HUMAN 89 IAPP_MESAU 92 IAPP_MOUSE 93 IAPP_OCTDE 91 IAPP_RAT 93 Pratt run started at Thu Feb 6 19:03:56 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 28( 28) C-x(3,4)-T-C 2: 11.0102 40( 28) C-x(2,4)-L-x(3,4)-L 3: 8.3401 28( 28) T-C 4: 8.3401 32( 28) T-x(2)-L 5: 7.8401 66( 28) S-x(3,4)-G 6: 7.8401 110( 28) L-x(3,4)-L 7: 7.8401 40( 28) N-x(2,3)-T 8: 7.3401 72( 28) S-x(2,4)-G 9: 7.3401 100( 28) L-x(0,2)-S Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 12.1396 39( 28) L-x(0,2)-S-[GPST]-x(2)-[ALV] B 2: 12.0102 28( 28) C-x(3,4)-T-C C 3: 11.0102 40( 28) C-x(2,4)-L-x(3,4)-L D 4: 10.5302 28( 28) T-x(2)-L-[AGST] E 5: 10.4388 56( 28) L-x(3,4)-L-[GSV] F 6: 9.7604 30( 28) N-x(2,3)-T-x(3)-[GNQST] G 7: 9.2298 44( 28) S-x(2,4)-G-x(2)-[ANSTV] H 8: 8.3401 28( 28) T-C I 9: 7.8401 66( 28) S-x(3,4)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 12.1396 39( 28) L-x(0,2)-S-[GPST]-x(2)-[ALV] Occurences: 39(28) CAL0_HUMAN : 88- 93: krcgn L--STcmL gtytq CAL0_RAT : 4- 11: mgf LkfSPflV vsill CAL0_RAT : 32- 39: plrst LesSPgmA tlsee CAL0_RAT : 88- 93: krcgn L--STcmL gtytq CAL1_HUMAN : 98- 105: rlagl LsrSGgvV knnfv CAL1_ONCKE : 86- 91: krcsn L--STcvL gklsq CAL1_RAT : 4- 11: mgf LkfSPflV vsill CAL1_RAT : 32- 39: plrst LesSPgmA atlse CAL1_RAT : 98- 105: rlagl LsrSGgvV kdnfv CAL2_HUMAN : 32- 39: pfrsa LesSPdpA tlske CAL2_HUMAN : 97- 104: rlagl LsrSGgmV ksnfv CAL2_ONCKE : 4- 9: csn L--STcvL gklsq CAL2_RAT : 10- 17: kffpf LalSSmwV lclas CAL2_RAT : 12- 17: fpfla L--SSmwV lclas CAL2_RAT : 20- 26: mwvlc La-SSlqA apfrs CAL2_RAT : 33- 39: pfrsa Le-SSldL gtlsd CAL2_RAT : 104- 111: rlagl LrrSGgvV kdnfv CAL3_ONCKI : 4- 9: csn L--STcmL gklsq CALR_CHICK : 4- 11: mvm LkiSSflA vyalv CAL_ANGJA : 4- 9: csn L--STcvL gklsq CAL_BOVIN : 4- 9: csn L--STcvL saywk CAL_CANFA : 50- 55: krcsn L--STcvL gtysk CAL_CHICK : 4- 11: mvm LkiSSflA vyalv CAL_CHICK : 85- 90: krcas L--STcvL gklsq CAL_PIG : 4- 9: csn L--STcvL saywr CAL_SHEEP : 90- 95: krcsn L--STcvL saywk CGRP_PIG : 16- 23: rlagl LsrSGgmV ksnfv CGRP_RANRI : 16- 23: rladf LsrSGgmA knnfv CGRP_SHEEP : 16- 23: rlagl LsrSGgvV ksnfv IAPP_CANFA : 60- 65: nlgai L--SPtnV gsnty IAPP_CAVPO : 52- 59: rltnf LvrSShnL gaall IAPP_CRIGR : 27- 32: nlgpv L--SPtnV gsnty IAPP_FELCA : 49- 56: rlanf LirSSnnL gails IAPP_FELCA : 60- 65: nlgai L--SPtnV gsnty IAPP_HUMAN : 60- 65: nfgai L--SStnV gsnty IAPP_MESAU : 63- 68: nlgpv L--SPtnV gsnty IAPP_MOUSE : 53- 60: rlanf LvrSSnnL gpvlp IAPP_OCTDE : 52- 59: rltnf LvrSShnL gaalp IAPP_RAT : 53- 60: rlanf LvrSSnnL gpvlp B 2: 12.0102 28( 28) C-x(3,4)-T-C Occurences: 28(28) CAL0_HUMAN : 85- 91: prskr CgnlsTC mlgty CAL0_RAT : 85- 91: prskr CgnlsTC mlgty CAL1_HUMAN : 84- 89: aqkra Cdta-TC vthrl CAL1_ONCKE : 83- 89: pmskr CsnlsTC vlgkl CAL1_RAT : 84- 89: aqkrs Cnta-TC vthrl CAL2_HUMAN : 83- 88: aqkra Cnta-TC vthrl CAL2_ONCKE : 1- 7: CsnlsTC vlgkl CAL2_RAT : 90- 95: sqkrs Cnta-TC vthrl CAL3_ONCKI : 1- 7: CsnlsTC mlgkl CALR_CHICK : 81- 86: aqkra Cnta-TC vthrl CAL_ANGJA : 1- 7: CsnlsTC vlgkl CAL_BOVIN : 1- 7: CsnlsTC vlsay CAL_CANFA : 47- 53: srakr CsnlsTC vlgty CAL_CHICK : 82- 88: piskr CaslsTC vlgkl CAL_PIG : 1- 7: CsnlsTC vlsay CAL_SHEEP : 87- 93: srakr CsnlsTC vlsay CGRP_PIG : 2- 7: s Cnta-TC vthrl CGRP_RANRI : 2- 7: a Cnta-TC vthrl CGRP_SHEEP : 2- 7: s Cnta-TC vthrl IAPP_CANFA : 35- 40: mekrk Cnta-TC atqrl IAPP_CAVPO : 38- 43: vgkrk Cnta-TC atqrl IAPP_CRIGR : 2- 7: k Cnta-TC atqrl IAPP_FELCA : 35- 40: vekrk Cnta-TC atqrl IAPP_HUMAN : 35- 40: vekrk Cnta-TC atqrl IAPP_MESAU : 38- 43: mdkrk Cnta-TC atqrl IAPP_MOUSE : 39- 44: mdkrk Cnta-TC atqrl IAPP_OCTDE : 38- 43: vdkrk Cnta-TC atqrl IAPP_RAT : 39- 44: vdkrk Cnta-TC atqrl C 3: 11.0102 40( 28) C-x(2,4)-L-x(3,4)-L Occurences: 40(28) CAL0_HUMAN : 85- 93: prskr Cgn--LstcmL gtytq CAL0_RAT : 85- 93: prskr Cgn--LstcmL gtytq CAL1_HUMAN : 89- 98: cdtat CvthrLagl-L srsgg CAL1_ONCKE : 83- 91: pmskr Csn--LstcvL gklsq CAL1_ONCKE : 89- 98: snlst CvlgkLsqe-L hklqt CAL1_RAT : 89- 98: cntat CvthrLagl-L srsgg CAL2_HUMAN : 88- 97: cntat CvthrLagl-L srsgg CAL2_ONCKE : 1- 9: Csn--LstcvL gklsq CAL2_ONCKE : 7- 16: snlst CvlgkLsqd-L hklqt CAL2_RAT : 95- 104: cntat CvthrLagl-L rrsgg CAL3_ONCKI : 1- 9: Csn--LstcmL gklsq CAL3_ONCKI : 7- 16: snlst CmlgkLsqd-L hklqt CALR_CHICK : 86- 95: cntat CvthrLadf-L srsgg CAL_ANGJA : 1- 9: Csn--LstcvL gklsq CAL_ANGJA : 7- 16: snlst CvlgkLsqe-L hklqt CAL_BOVIN : 1- 9: Csn--LstcvL saywk CAL_CANFA : 47- 55: srakr Csn--LstcvL gtysk CAL_CHICK : 82- 90: piskr Cas--LstcvL gklsq CAL_CHICK : 88- 97: aslst CvlgkLsqe-L hklqt CAL_PIG : 1- 9: Csn--LstcvL saywr CAL_SHEEP : 18- 28: silvl CqagsLqatpL rsale CAL_SHEEP : 87- 95: srakr Csn--LstcvL saywk CGRP_PIG : 7- 16: cntat CvthrLagl-L srsgg CGRP_RANRI : 7- 16: cntat CvthrLadf-L srsgg CGRP_SHEEP : 7- 16: cntat CvthrLagl-L srsgg IAPP_CANFA : 2- 10: m Cllk-Lpvv-L iilsv IAPP_CANFA : 40- 49: cntat CatqrLanf-L vrtsn IAPP_CAVPO : 2- 10: m Cllr-Lpvt-L lvlcv IAPP_CAVPO : 2- 11: m Cllr-LpvtlL vlcva IAPP_CAVPO : 43- 52: cntat CatqrLtnf-L vrssh IAPP_CRIGR : 7- 16: cntat CatqrLanf-L vhsnn IAPP_FELCA : 2- 10: m Cllk-Lpvv-L ivllv IAPP_FELCA : 40- 49: cntat CatqrLanf-L irssn IAPP_HUMAN : 40- 49: cntat CatqrLanf-L vhssn IAPP_MESAU : 43- 52: cntat CatqrLanf-L vhsnn IAPP_MOUSE : 3- 11: mm Cisk-Lpav-L lilsv IAPP_MOUSE : 3- 12: mm Cisk-LpavlL ilsva IAPP_MOUSE : 44- 53: cntat CatqrLanf-L vrssn IAPP_OCTDE : 2- 10: m Cllq-Lpvv-L lllsa IAPP_OCTDE : 2- 11: m Cllq-LpvvlL llsaa IAPP_OCTDE : 43- 52: cntat CatqrLtnf-L vrssh IAPP_RAT : 3- 11: mr Cisr-Lpav-L lilsv IAPP_RAT : 3- 12: mr Cisr-LpavlL ilsva IAPP_RAT : 44- 53: cntat CatqrLanf-L vrssn D 4: 10.5302 28( 28) T-x(2)-L-[AGST] Occurences: 28(28) CAL0_HUMAN : 90- 94: cgnls TcmLG tytqd CAL0_RAT : 90- 94: cgnls TcmLG tytqd CAL1_HUMAN : 91- 95: tatcv ThrLA gllsr CAL1_ONCKE : 88- 92: csnls TcvLG klsqe CAL1_RAT : 91- 95: tatcv ThrLA gllsr CAL2_HUMAN : 90- 94: tatcv ThrLA gllsr CAL2_ONCKE : 6- 10: csnls TcvLG klsqd CAL2_RAT : 97- 101: tatcv ThrLA gllrr CAL3_ONCKI : 6- 10: csnls TcmLG klsqd CALR_CHICK : 88- 92: tatcv ThrLA dflsr CAL_ANGJA : 6- 10: csnls TcvLG klsqe CAL_BOVIN : 6- 10: csnls TcvLS aywkd CAL_CANFA : 52- 56: csnls TcvLG tyskd CAL_CHICK : 87- 91: casls TcvLG klsqe CAL_PIG : 6- 10: csnls TcvLS aywrn CAL_SHEEP : 92- 96: csnls TcvLS aywkd CGRP_PIG : 9- 13: tatcv ThrLA gllsr CGRP_RANRI : 9- 13: tatcv ThrLA dflsr CGRP_SHEEP : 9- 13: tatcv ThrLA gllsr IAPP_CANFA : 42- 46: tatca TqrLA nflvr IAPP_CAVPO : 45- 49: tatca TqrLT nflvr IAPP_CRIGR : 9- 13: tatca TqrLA nflvh IAPP_FELCA : 42- 46: tatca TqrLA nflir IAPP_HUMAN : 42- 46: tatca TqrLA nflvh IAPP_MESAU : 45- 49: tatca TqrLA nflvh IAPP_MOUSE : 46- 50: tatca TqrLA nflvr IAPP_OCTDE : 45- 49: tatca TqrLT nflvr IAPP_RAT : 46- 50: tatca TqrLA nflvr E 5: 10.4388 56( 28) L-x(3,4)-L-[GSV] Occurences: 56(28) CAL0_HUMAN : 10- 16: kfspf LalsiLV llqag CAL0_HUMAN : 49- 55: edear LllaaLV qdyvq CAL0_HUMAN : 50- 55: dearl Llaa-LV qdyvq CAL0_HUMAN : 88- 94: krcgn LstcmLG tytqd CAL0_RAT : 48- 53: eeear Llaa-LV qnymq CAL0_RAT : 88- 94: krcgn LstcmLG tytqd CAL1_HUMAN : 10- 16: kfspf LalsiLV llqag CAL1_HUMAN : 49- 55: edear LllaaLV qdyvq CAL1_HUMAN : 50- 55: dearl Llaa-LV qdyvq CAL1_HUMAN : 94- 99: cvthr Lagl-LS rsggv CAL1_ONCKE : 10- 16: klsal LiayfLV icqmy CAL1_ONCKE : 86- 92: krcsn LstcvLG klsqe CAL1_RAT : 49- 55: eeear LllaaLV qnymq CAL1_RAT : 50- 55: eearl Llaa-LV qnymq CAL1_RAT : 94- 99: cvthr Lagl-LS rsggv CAL2_HUMAN : 10- 16: kfspf LalsiLV lyqag CAL2_HUMAN : 48- 54: kedar LllaaLV qdyvq CAL2_HUMAN : 49- 54: edarl Llaa-LV qdyvq CAL2_HUMAN : 93- 98: cvthr Lagl-LS rsggm CAL2_ONCKE : 4- 10: csn LstcvLG klsqd CAL2_RAT : 37- 43: aless LdlgtLS dqekh CAL3_ONCKI : 4- 10: csn LstcmLG klsqd CALR_CHICK : 10- 16: kissf LavyaLV vcqmd CALR_CHICK : 49- 54: yearr Llna-LV kdfiq CALR_CHICK : 91- 96: cvthr Ladf-LS rsggv CAL_ANGJA : 4- 10: csn LstcvLG klsqe CAL_BOVIN : 4- 10: csn LstcvLS aywkd CAL_CANFA : 50- 56: krcsn LstcvLG tyskd CAL_CHICK : 10- 16: kissf LavyaLV vcqmd CAL_CHICK : 49- 54: yearr Llna-LV kdfiq CAL_CHICK : 85- 91: krcas LstcvLG klsqe CAL_PIG : 4- 10: csn LstcvLS aywrn CAL_SHEEP : 10- 16: ksspf LafsiLV lcqag CAL_SHEEP : 48- 54: ekegr LllaaLV kayvq CAL_SHEEP : 49- 54: kegrl Llaa-LV kayvq CAL_SHEEP : 90- 96: krcsn LstcvLS aywkd CAL_SHEEP : 128- 133: dians Lekd-LS shfgv CGRP_PIG : 12- 17: cvthr Lagl-LS rsggm CGRP_RANRI : 12- 17: cvthr Ladf-LS rsggm CGRP_SHEEP : 12- 17: cvthr Lagl-LS rsggv IAPP_CANFA : 45- 50: catqr Lanf-LV rtsnn IAPP_CANFA : 56- 61: rtsnn Lgai-LS ptnvg IAPP_CAVPO : 6- 12: mcllr LpvtlLV lcval IAPP_CAVPO : 48- 53: catqr Ltnf-LV rsshn IAPP_CRIGR : 12- 17: catqr Lanf-LV hsnnn IAPP_CRIGR : 23- 28: hsnnn Lgpv-LS ptnvg IAPP_FELCA : 10- 15: klpvv Livl-LV alhhl IAPP_FELCA : 56- 61: rssnn Lgai-LS ptnvg IAPP_HUMAN : 45- 50: catqr Lanf-LV hssnn IAPP_MESAU : 48- 53: catqr Lanf-LV hsnnn IAPP_MESAU : 59- 64: hsnnn Lgpv-LS ptnvg IAPP_MOUSE : 49- 54: catqr Lanf-LV rssnn IAPP_MOUSE : 88- 93: pnres Ldfl-LV IAPP_OCTDE : 48- 53: catqr Ltnf-LV rsshn IAPP_RAT : 14- 19: avlli Lsva-LG hlrat IAPP_RAT : 49- 54: catqr Lanf-LV rssnn F 6: 9.7604 30( 28) N-x(2,3)-T-x(3)-[GNQST] Occurences: 30(28) CAL0_HUMAN : 87- 94: skrcg Nls-TcmlG tytqd CAL0_HUMAN : 101- 109: ytqdf NkfhTfpqT aigvg CAL0_RAT : 87- 94: skrcg Nls-TcmlG tytqd CAL0_RAT : 101- 109: ytqdl NkfhTfpqT sigvg CAL1_HUMAN : 108- 116: gvvkn NfvpTnvgS kafgr CAL1_ONCKE : 85- 92: skrcs Nls-TcvlG klsqe CAL1_RAT : 108- 116: gvvkd NfvpTnvgS eafgr CAL2_HUMAN : 107- 115: gmvks NfvpTnvgS kafgr CAL2_ONCKE : 3- 10: cs Nls-TcvlG klsqd CAL2_RAT : 114- 122: gvvkd NfvpTnvgS kafgr CAL3_ONCKI : 3- 10: cs Nls-TcmlG klsqd CALR_CHICK : 105- 113: gvgkn NfvpTnvgS kafgr CAL_ANGJA : 3- 10: cs Nls-TcvlG klsqe CAL_BOVIN : 3- 10: cs Nls-TcvlS aywkd CAL_CANFA : 49- 56: akrcs Nls-TcvlG tyskd CAL_CHICK : 130- 138: herya NygeTlgnN CAL_PIG : 3- 10: cs Nls-TcvlS aywrn CAL_SHEEP : 89- 96: akrcs Nls-TcvlS aywkd CGRP_PIG : 26- 34: gmvks NfvpTdvgS eaf CGRP_RANRI : 26- 34: gmakn NfvpTnvgS kaf CGRP_SHEEP : 26- 34: gvvks NfvpTnvgS qaf IAPP_CANFA : 36- 43: ekrkc Nta-TcatQ rlanf IAPP_CAVPO : 39- 46: gkrkc Nta-TcatQ rltnf IAPP_CRIGR : 3- 10: kc Nta-TcatQ rlanf IAPP_FELCA : 36- 43: ekrkc Nta-TcatQ rlanf IAPP_HUMAN : 36- 43: ekrkc Nta-TcatQ rlanf IAPP_MESAU : 39- 46: dkrkc Nta-TcatQ rlanf IAPP_MOUSE : 40- 47: dkrkc Nta-TcatQ rlanf IAPP_OCTDE : 39- 46: dkrkc Nta-TcatQ rltnf IAPP_RAT : 40- 47: dkrkc Nta-TcatQ rlanf G 7: 9.2298 44( 28) S-x(2,4)-G-x(2)-[ANSTV] Occurences: 44(28) CAL0_HUMAN : 82- 89: ldspr Skrc-GnlS tcmlg CAL0_HUMAN : 89- 97: rcgnl StcmlGtyT qdfnk CAL0_RAT : 34- 40: rstle Ssp--GmaT lseee CAL0_RAT : 82- 89: ldspr Skrc-GnlS tcmlg CAL0_RAT : 89- 97: rcgnl StcmlGtyT qdlnk CAL1_HUMAN : 99- 105: lagll Srs--GgvV knnfv CAL1_ONCKE : 87- 95: rcsnl StcvlGklS qelhk CAL1_RAT : 34- 40: rstle Ssp--GmaA tlsee CAL1_RAT : 99- 105: lagll Srs--GgvV kdnfv CAL2_HUMAN : 98- 104: lagll Srs--GgmV ksnfv CAL2_ONCKE : 5- 13: csnl StcvlGklS qdlhk CAL2_RAT : 35- 43: rsale SsldlGtlS dqekh CAL2_RAT : 36- 43: sales Sldl-GtlS dqekh CAL2_RAT : 75- 81: qeteg Srk--GssS svisq CAL3_ONCKI : 5- 13: csnl StcmlGklS qdlhk CALR_CHICK : 98- 105: dflsr Sggv-GknN fvptn CAL_ANGJA : 5- 13: csnl StcvlGklS qelhk CAL_BOVIN : 23- 31: nyhrf SgmgfGpeT p CAL_CANFA : 17- 24: dptal Sekk-GrlN lqeqe CAL_CANFA : 51- 59: rcsnl StcvlGtyS kdlnn CAL_CANFA : 69- 75: nfhtf Sgi--GfgA etpgk CAL_CANFA : 69- 77: nfhtf SgigfGaeT pgkkr CAL_CHICK : 86- 94: rcasl StcvlGklS qelhk CAL_PIG : 23- 31: nfhrf SgmgfGpeT p CAL_SHEEP : 109- 117: nyhry SgmgfGpeT pgkkr CAL_SHEEP : 133- 140: lekdl Sshf-GvpT dan CAL_SHEEP : 134- 140: ekdls Shf--GvpT dan CGRP_PIG : 17- 23: lagll Srs--GgmV ksnfv CGRP_RANRI : 17- 23: ladfl Srs--GgmA knnfv CGRP_SHEEP : 17- 23: lagll Srs--GgvV ksnfv IAPP_CANFA : 61- 69: lgail SptnvGsnT ygkrn IAPP_CANFA : 67- 74: ptnvg Snty-GkrN tieil IAPP_CAVPO : 27- 33: atsia Sdt--GhqV gkrkc IAPP_CAVPO : 70- 77: ptdvg Snty-GkrN apqis IAPP_CRIGR : 28- 36: lgpvl SptnvGsnT y IAPP_FELCA : 61- 69: lgail SptnvGsnT ygkrs IAPP_FELCA : 67- 74: ptnvg Snty-GkrS tvdil IAPP_HUMAN : 61- 69: fgail SstnvGsnT ygkrn IAPP_HUMAN : 62- 69: gails Stnv-GsnT ygkrn IAPP_HUMAN : 67- 74: stnvg Snty-GkrN avevl IAPP_MESAU : 64- 72: lgpvl SptnvGsnT ygkrs IAPP_MESAU : 70- 77: ptnvg Snty-GkrS aaeip IAPP_MOUSE : 71- 78: ptnvg Snty-GkrN aagdp IAPP_OCTDE : 70- 77: ptkvg Snty-GrrN aevvd IAPP_RAT : 71- 78: ptnvg Snty-GkrN vaedp H 8: 8.3401 28( 28) T-C Occurences: 28(28) CAL0_HUMAN : 90- 91: cgnls TC mlgty CAL0_RAT : 90- 91: cgnls TC mlgty CAL1_HUMAN : 88- 89: acdta TC vthrl CAL1_ONCKE : 88- 89: csnls TC vlgkl CAL1_RAT : 88- 89: scnta TC vthrl CAL2_HUMAN : 87- 88: acnta TC vthrl CAL2_ONCKE : 6- 7: csnls TC vlgkl CAL2_RAT : 94- 95: scnta TC vthrl CAL3_ONCKI : 6- 7: csnls TC mlgkl CALR_CHICK : 85- 86: acnta TC vthrl CAL_ANGJA : 6- 7: csnls TC vlgkl CAL_BOVIN : 6- 7: csnls TC vlsay CAL_CANFA : 52- 53: csnls TC vlgty CAL_CHICK : 87- 88: casls TC vlgkl CAL_PIG : 6- 7: csnls TC vlsay CAL_SHEEP : 92- 93: csnls TC vlsay CGRP_PIG : 6- 7: scnta TC vthrl CGRP_RANRI : 6- 7: acnta TC vthrl CGRP_SHEEP : 6- 7: scnta TC vthrl IAPP_CANFA : 39- 40: kcnta TC atqrl IAPP_CAVPO : 42- 43: kcnta TC atqrl IAPP_CRIGR : 6- 7: kcnta TC atqrl IAPP_FELCA : 39- 40: kcnta TC atqrl IAPP_HUMAN : 39- 40: kcnta TC atqrl IAPP_MESAU : 42- 43: kcnta TC atqrl IAPP_MOUSE : 43- 44: kcnta TC atqrl IAPP_OCTDE : 42- 43: kcnta TC atqrl IAPP_RAT : 43- 44: kcnta TC atqrl I 9: 7.8401 66( 28) S-x(3,4)-G Occurences: 66(28) CAL0_HUMAN : 82- 86: ldspr Skrc-G nlstc CAL0_HUMAN : 89- 94: rcgnl StcmlG tytqd CAL0_RAT : 82- 86: ldspr Skrc-G nlstc CAL0_RAT : 89- 94: rcgnl StcmlG tytqd CAL0_RAT : 110- 114: tfpqt Sigv-G apgkk CAL1_HUMAN : 99- 103: lagll Srsg-G vvknn CAL1_HUMAN : 116- 120: ptnvg Skaf-G rrrrd CAL1_ONCKE : 87- 92: rcsnl StcvlG klsqe CAL1_ONCKE : 111- 115: rtntg Sgtp-G kkrsl CAL1_RAT : 99- 103: lagll Srsg-G vvkdn CAL1_RAT : 116- 120: ptnvg Seaf-G rrrrd CAL2_HUMAN : 98- 102: lagll Srsg-G mvksn CAL2_HUMAN : 115- 119: ptnvg Skaf-G rrrrd CAL2_ONCKE : 5- 10: csnl StcvlG klsqd CAL2_RAT : 35- 40: rsale SsldlG tlsdq CAL2_RAT : 36- 40: sales Sldl-G tlsdq CAL2_RAT : 122- 126: ptnvg Skaf-G rrrrd CAL3_ONCKI : 5- 10: csnl StcmlG klsqd CALR_CHICK : 96- 100: ladfl Srsg-G vgknn CALR_CHICK : 98- 102: dflsr Sggv-G knnfv CALR_CHICK : 113- 117: ptnvg Skaf-G rrrrs CAL_ANGJA : 5- 10: csnl StcvlG klsqe CAL_BOVIN : 23- 28: nyhrf SgmgfG petp CAL_CANFA : 5- 9: apfr Sale-G lpdpt CAL_CANFA : 17- 21: dptal Sekk-G rlnlq CAL_CANFA : 51- 56: rcsnl StcvlG tyskd CAL_CANFA : 69- 74: nfhtf SgigfG aetpg CAL_CANFA : 86- 91: krdia SglerG r CAL_CHICK : 86- 91: rcasl StcvlG klsqe CAL_PIG : 23- 28: nfhrf SgmgfG petp CAL_SHEEP : 42- 46: dpgal Seke-G rllla CAL_SHEEP : 109- 114: nyhry SgmgfG petpg CAL_SHEEP : 133- 137: lekdl Sshf-G vptda CGRP_PIG : 17- 21: lagll Srsg-G mvksn CGRP_RANRI : 17- 21: ladfl Srsg-G maknn CGRP_SHEEP : 17- 21: lagll Srsg-G vvksn IAPP_CANFA : 53- 57: flvrt Snnl-G ailsp IAPP_CANFA : 61- 66: lgail SptnvG sntyg IAPP_CANFA : 67- 71: ptnvg Snty-G krnti IAPP_CAVPO : 55- 60: nflvr SshnlG aallp IAPP_CAVPO : 56- 60: flvrs Shnl-G aallp IAPP_CAVPO : 70- 74: ptdvg Snty-G krnap IAPP_CRIGR : 19- 24: nflvh SnnnlG pvlsp IAPP_CRIGR : 28- 33: lgpvl SptnvG snty IAPP_FELCA : 52- 57: nflir SsnnlG ailsp IAPP_FELCA : 53- 57: flirs Snnl-G ailsp IAPP_FELCA : 61- 66: lgail SptnvG sntyg IAPP_FELCA : 67- 71: ptnvg Snty-G krstv IAPP_HUMAN : 52- 57: nflvh SsnnfG ailss IAPP_HUMAN : 53- 57: flvhs Snnf-G ailss IAPP_HUMAN : 61- 66: fgail SstnvG sntyg IAPP_HUMAN : 62- 66: gails Stnv-G sntyg IAPP_HUMAN : 67- 71: stnvg Snty-G krnav IAPP_MESAU : 55- 60: nflvh SnnnlG pvlsp IAPP_MESAU : 64- 69: lgpvl SptnvG sntyg IAPP_MESAU : 70- 74: ptnvg Snty-G krsaa IAPP_MOUSE : 56- 61: nflvr SsnnlG pvlpp IAPP_MOUSE : 57- 61: flvrs Snnl-G pvlpp IAPP_MOUSE : 71- 75: ptnvg Snty-G krnaa IAPP_OCTDE : 55- 60: nflvr SshnlG aalpp IAPP_OCTDE : 56- 60: flvrs Shnl-G aalpp IAPP_OCTDE : 70- 74: ptkvg Snty-G rrnae IAPP_RAT : 15- 19: vllil Sval-G hlrat IAPP_RAT : 56- 61: nflvr SsnnlG pvlpp IAPP_RAT : 57- 61: flvrs Snnl-G pvlpp IAPP_RAT : 71- 75: ptnvg Snty-G krnva Number of patterns evaluated by Pratt:18 Total running time: 0 seconds