------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file BTG1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename BTG1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: B910_XENLA 237 B915_XENLA 233 BTG1_CHICK 170 BTG1_HUMAN 171 PC3_RAT 158 TS21_MOUSE 158 Pratt run started at Thu Feb 6 19:01:53 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 77.7310 6( 6) Q-x(3,4)-F-x(3)-L-x(3)-L-x(3)-Y-K-x-H-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N-x(3,5)-D 2: 74.0609 6( 6) F-x(3)-L-x(3)-L-x(3)-Y-K-x-H-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N-x(3,5)-D 3: 69.8909 6( 6) L-x(3)-L-x(3)-Y-K-x-H-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N-x(3,5)-D 4: 69.8909 6( 6) F-x(3)-L-x(3)-L-x(3)-Y-K-x(0,1)-H-x(0,1)-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N 5: 69.3909 6( 6) L-x(2,3)-L-x(3)-Y-K-x-H-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N-x(3,5)-D 6: 65.7208 6( 6) L-x(3)-L-x(3)-Y-K-x(0,1)-H-x(0,1)-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N 7: 65.2208 9( 6) L-x(3,4)-Y-K-x-H-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N-x(3,5)-D 8: 65.2208 6( 6) L-x(2,3)-Y-K-x-H-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N-x(3,5)-D 9: 61.5508 6( 6) Y-K-x-H-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N-x(3,5)-D 10: 61.5508 6( 6) L-x(3)-Y-K-x(0,1)-H-x(0,1)-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N 11: 57.8807 6( 6) L-x(0,1)-L-P-x-E-x-T-x-W-V-D-P-x-E-V-x(2)-R-x-G-E 12: 57.3807 6( 6) L-x(1,2)-L-x(0,1)-P-x-E-x-T-x-W-V-D-P-x-E-V-x(2)-R-x-G-E 13: 57.3807 6( 6) K-x-H-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N-x(3,5)-D 14: 57.3807 6( 6) Y-K-x(0,1)-H-x(0,1)-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N 15: 53.2107 6( 6) H-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N-x(3,5)-D 16: 53.2107 6( 6) K-x(0,1)-H-x(0,1)-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N 17: 52.7107 6( 6) L-x(0,1)-L-P-x-E-x-T-x-W-V-D-P-x-E-V-x(1,3)-Y-x(4)-D 18: 52.7107 10( 6) H-x(0,1)-W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N-x(3,5)-D 19: 52.2107 6( 6) L-P-x-E-x-T-x-W-V-D-P-x-E-V-x(1,3)-Y-x(0,2)-G-E 20: 49.0406 6( 6) W-x(2)-E-x-P-x-K-G-x(3)-R-C-I-R-I-N-x(3,5)-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 126.9963 6( 6) F-x(3)-L-[QT]-[DET]-[AIL]-L-x-[ADE]-[HK]-Y-K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR] B 2: 124.0125 6( 6) L-x(3)-L-x-[ADE]-[HK]-Y-K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS] C 3: 123.5991 6( 6) H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS]-x-[NPQ]-[DEQ]-L-x(2)-[LP]-x-[EP]-x-[ET]-[IL] D 4: 123.5125 6( 6) L-x(2,3)-L-x-[ADE]-[HK]-Y-K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS] E 5: 122.7599 9( 6) L-x(3,4)-Y-K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS]-x-[NPQ]-[DEQ]-L F 6: 122.7599 6( 6) L-x(2,3)-Y-K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS]-x-[NPQ]-[DEQ]-L G 7: 122.5192 6( 6) Q-x(3,4)-F-[AS]-x(2)-L-[QT]-[DET]-[AIL]-L-x-[ADE]-[HK]-Y-K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS] H 8: 122.3073 6( 6) Y-K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS]-x-[NPQ]-[DEQ]-L-x(2)-[LP] I 9: 121.3074 6( 6) K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS]-x-[NPQ]-[DEQ]-L-x(2)-[LP]-x-[EP] J 10: 121.1601 6( 6) F-[AS]-x(2)-L-[QT]-[DET]-[AIL]-L-x-[ADE]-[HK]-Y-K-x(0,1)-H-x(0,1)-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3)-[AD]-[ILP]-x-[AI]-[GSV]-x(3)-[AQS]-x(2)-[EG] K 11: 119.8124 10( 6) H-x(0,1)-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS]-x-[NPQ]-[DEQ]-L-x(2)-[LP]-x-[EP]-x-[ET] L 12: 119.6270 6( 6) L-[QT]-[DET]-[AIL]-L-x-[ADE]-[HK]-Y-K-x(0,1)-H-x(0,1)-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3)-[AD]-[ILP]-x-[AI]-[GSV]-x(3)-[AQS]-x(2)-[EG]-x-[NS]-x-[DPQ] M 13: 119.4290 6( 6) W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS]-x-[NPQ]-[DEQ]-L-x(2)-[LP]-x-[EP]-x-[ET]-[IL] N 14: 108.3867 6( 6) Y-K-x(0,1)-H-x(0,1)-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3)-[AD]-[ILP]-x-[AI]-[GSV]-x(3)-[AQS]-x(2)-[EG]-x-[NS]-x-[DPQ]-x(4)-[GL]-L-P O 15: 108.3867 6( 6) K-x(0,1)-H-x(0,1)-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3)-[AD]-[ILP]-x-[AI]-[GSV]-x(3)-[AQS]-x(2)-[EG]-x-[NS]-x-[DPQ]-x(4)-[GL]-L-P-x-E P 16: 106.9886 6( 6) L-x-[ADE]-[HK]-Y-K-x(0,1)-H-x(0,1)-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3)-[AD]-[ILP]-x-[AI]-[GSV]-x(3)-[AQS]-x(2)-[EG]-x-[NS]-x-[DPQ] Q 17: 104.4572 6( 6) L-x(0,1)-L-P-x-E-[LM]-T-[IL]-W-V-D-P-[FY]-E-V-[CS]-x-R-x-G-E-[DK]-[GN]-[DS]-[IP]-x-[TV]-[IL]-x-[ES]-x(2)-[GP]-x-[ADG]-[AGT]-x(2)-[AGNQ] R 18: 103.9572 6( 6) L-x(1,2)-L-x(0,1)-P-x-E-[LM]-T-[IL]-W-V-D-P-[FY]-E-V-[CS]-x-R-x-G-E-[DK]-[GN]-[DS]-[IP]-x-[TV]-[IL]-x-[ES]-x(2)-[GP]-x-[ADG]-[AGT]-x(2)-[AGNQ] S 19: 95.5266 6( 6) L-P-x-E-[LM]-T-[IL]-W-V-D-P-[FY]-E-V-x(1,3)-Y-x(0,2)-G-E-[DK]-[GN]-[DS]-[IP]-x-[TV]-[IL]-x-[ES]-x(2)-[GP]-x-[ADG]-[AGT]-x(2)-[AGNQ] T 20: 95.1664 6( 6) L-x(0,1)-L-P-x-E-[LM]-T-[IL]-W-V-D-P-[FY]-E-V-x(1,3)-Y-x(3)-[EN]-D-[GP]-x(3)-[AV]-x-[FY]-[EK]-[AEG]-x-[DP]-[AGV]-x-[AGNT]-[AS]-x(4)-[NST] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 126.9963 6( 6) F-x(3)-L-[QT]-[DET]-[AIL]-L-x-[ADE]-[HK]-Y-K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR] Occurences: 6(6) B910_XENLA : 30- 78: qkiek FaakLTTILfAKYKnHWYAEnPmKGQAFRCIRINtyqaiDAVFEkACAE snvdf B915_XENLA : 30- 78: qkiek FaakLTTLLfAKYKtHWYAEnPtKGQAFRCIRINecqalDAVLEkACTE snvdf BTG1_CHICK : 40- 86: rqlqt FsqsLQELLaEHYKhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQR iglss BTG1_HUMAN : 40- 86: rqlqt FsqsLQELLaEHYKhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQR iglss PC3_RAT : 38- 84: qrlkv FsraLQDALtDHYKhHWFPEkPsKGSGYRCIRINhkm--DPIISkVASQ iglsq TS21_MOUSE : 38- 84: qrlkv FsraLQDALtDHYKhHWFPEkPsKGSGYRCIRINhkm--DPIISkVASQ iglsq B 2: 124.0125 6( 6) L-x(3)-L-x-[ADE]-[HK]-Y-K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS] Occurences: 6(6) B910_XENLA : 34- 82: kfaak LttiLfAKYKnHWYAEnPmKGQAFRCIRINtyqaiDAVFEkACAEsNVD fndlg B915_XENLA : 34- 82: kfaak LttlLfAKYKtHWYAEnPtKGQAFRCIRINecqalDAVLEkACTEsNVD fnelg BTG1_CHICK : 44- 90: tfsqs LqelLaEHYKhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLS sqelf BTG1_HUMAN : 44- 90: tfsqs LqelLaEHYKhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLS sqelf PC3_RAT : 42- 88: vfsra LqdaLtDHYKhHWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLS qpqlh TS21_MOUSE : 42- 88: vfsra LqdaLtDHYKhHWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLS qpqlh C 3: 123.5991 6( 6) H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS]-x-[NPQ]-[DEQ]-L-x(2)-[LP]-x-[EP]-x-[ET]-[IL] Occurences: 6(6) B910_XENLA : 45- 94: akykn HWYAEnPmKGQAFRCIRINtyqaiDAVFEkACAEsNVDfNDLglPkEmTI wvdpf B915_XENLA : 45- 94: akykt HWYAEnPtKGQAFRCIRINecqalDAVLEkACTEsNVDfNELglPkEmTI wvdpf BTG1_CHICK : 55- 102: ehykh HWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQELfqLlPsEL tlwvd BTG1_HUMAN : 55- 102: ehykh HWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQELfrLlPsEL tlwvd PC3_RAT : 53- 100: dhykh HWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQLhqLlPsEL tlwvd TS21_MOUSE : 53- 100: dhykh HWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQLhrLlPsEL tlwvd D 4: 123.5125 6( 6) L-x(2,3)-L-x-[ADE]-[HK]-Y-K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS] Occurences: 6(6) B910_XENLA : 34- 82: kfaak LttiLfAKYKnHWYAEnPmKGQAFRCIRINtyqaiDAVFEkACAEsNVD fndlg B915_XENLA : 34- 82: kfaak LttlLfAKYKtHWYAEnPtKGQAFRCIRINecqalDAVLEkACTEsNVD fnelg BTG1_CHICK : 44- 90: tfsqs LqelLaEHYKhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLS sqelf BTG1_HUMAN : 44- 90: tfsqs LqelLaEHYKhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLS sqelf PC3_RAT : 42- 88: vfsra LqdaLtDHYKhHWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLS qpqlh TS21_MOUSE : 42- 88: vfsra LqdaLtDHYKhHWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLS qpqlh E 5: 122.7599 9( 6) L-x(3,4)-Y-K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS]-x-[NPQ]-[DEQ]-L Occurences: 9(6) B910_XENLA : 38- 86: kltti Lfak-YKnHWYAEnPmKGQAFRCIRINtyqaiDAVFEkACAEsNVDfNDL glpke B915_XENLA : 37- 86: akltt LlfakYKtHWYAEnPtKGQAFRCIRINecqalDAVLEkACTEsNVDfNEL glpke B915_XENLA : 38- 86: klttl Lfak-YKtHWYAEnPtKGQAFRCIRINecqalDAVLEkACTEsNVDfNEL glpke BTG1_CHICK : 47- 94: qslqe LlaehYKhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQEL fqllp BTG1_CHICK : 48- 94: slqel Laeh-YKhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQEL fqllp BTG1_HUMAN : 47- 94: qslqe LlaehYKhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQEL frllp BTG1_HUMAN : 48- 94: slqel Laeh-YKhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQEL frllp PC3_RAT : 46- 92: alqda Ltdh-YKhHWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQL hqllp TS21_MOUSE : 46- 92: alqda Ltdh-YKhHWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQL hrllp F 6: 122.7599 6( 6) L-x(2,3)-Y-K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS]-x-[NPQ]-[DEQ]-L Occurences: 6(6) B910_XENLA : 38- 86: kltti LfakYKnHWYAEnPmKGQAFRCIRINtyqaiDAVFEkACAEsNVDfNDL glpke B915_XENLA : 38- 86: klttl LfakYKtHWYAEnPtKGQAFRCIRINecqalDAVLEkACTEsNVDfNEL glpke BTG1_CHICK : 48- 94: slqel LaehYKhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQEL fqllp BTG1_HUMAN : 48- 94: slqel LaehYKhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQEL frllp PC3_RAT : 46- 92: alqda LtdhYKhHWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQL hqllp TS21_MOUSE : 46- 92: alqda LtdhYKhHWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQL hrllp G 7: 122.5192 6( 6) Q-x(3,4)-F-[AS]-x(2)-L-[QT]-[DET]-[AIL]-L-x-[ADE]-[HK]-Y-K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS] Occurences: 6(6) B910_XENLA : 25- 73: kqlsk QkiekFAakLTTILfAKYKnHWYAEnPmKGQAFRCIRINtyqaiDAVFE kacae B915_XENLA : 25- 73: kqlsk QkiekFAakLTTLLfAKYKtHWYAEnPtKGQAFRCIRINecqalDAVLE kacte BTG1_CHICK : 36- 81: lmner Qlqt-FSqsLQELLaEHYKhHWFPEkPcKGSGYRCIRINhkm--DPLIG qaaqr BTG1_HUMAN : 36- 81: ltser Qlqt-FSqsLQELLaEHYKhHWFPEkPcKGSGYRCIRINhkm--DPLIG qaaqr PC3_RAT : 33- 79: gcvse QrlkvFSraLQDALtDHYKhHWFPEkPsKGSGYRCIRINhkm--DPIIS kvasq TS21_MOUSE : 33- 79: gcvse QrlkvFSraLQDALtDHYKhHWFPEkPsKGSGYRCIRINhkm--DPIIS kvasq H 8: 122.3073 6( 6) Y-K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS]-x-[NPQ]-[DEQ]-L-x(2)-[LP] Occurences: 6(6) B910_XENLA : 42- 89: ilfak YKnHWYAEnPmKGQAFRCIRINtyqaiDAVFEkACAEsNVDfNDLglP kemti B915_XENLA : 42- 89: llfak YKtHWYAEnPtKGQAFRCIRINecqalDAVLEkACTEsNVDfNELglP kemti BTG1_CHICK : 52- 97: llaeh YKhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQELfqL lpsel BTG1_HUMAN : 52- 97: llaeh YKhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQELfrL lpsel PC3_RAT : 50- 95: altdh YKhHWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQLhqL lpsel TS21_MOUSE : 50- 95: altdh YKhHWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQLhrL lpsel I 9: 121.3074 6( 6) K-x-H-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS]-x-[NPQ]-[DEQ]-L-x(2)-[LP]-x-[EP] Occurences: 6(6) B910_XENLA : 43- 91: lfaky KnHWYAEnPmKGQAFRCIRINtyqaiDAVFEkACAEsNVDfNDLglPkE mtiwv B915_XENLA : 43- 91: lfaky KtHWYAEnPtKGQAFRCIRINecqalDAVLEkACTEsNVDfNELglPkE mtiwv BTG1_CHICK : 53- 99: laehy KhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQELfqLlP seltl BTG1_HUMAN : 53- 99: laehy KhHWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQELfrLlP seltl PC3_RAT : 51- 97: ltdhy KhHWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQLhqLlP seltl TS21_MOUSE : 51- 97: ltdhy KhHWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQLhrLlP seltl J 10: 121.1601 6( 6) F-[AS]-x(2)-L-[QT]-[DET]-[AIL]-L-x-[ADE]-[HK]-Y-K-x(0,1)-H-x(0,1)-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3)-[AD]-[ILP]-x-[AI]-[GSV]-x(3)-[AQS]-x(2)-[EG] Occurences: 6(6) B910_XENLA : 30- 78: qkiek FAakLTTILfAKYKnH-WYAEnPmKGQAFRCIRINtyqAIdAVfekAcaE snvdf B915_XENLA : 30- 78: qkiek FAakLTTLLfAKYKtH-WYAEnPtKGQAFRCIRINecqALdAVlekActE snvdf BTG1_CHICK : 40- 88: rqlqt FSqsLQELLaEHYKhH-WFPEkPcKGSGYRCIRINhkmDPlIGqaaQriG lssqe BTG1_CHICK : 40- 88: rqlqt FSqsLQELLaEHYK-HhWFPEkPcKGSGYRCIRINhkmDPlIGqaaQriG lssqe BTG1_HUMAN : 40- 88: rqlqt FSqsLQELLaEHYKhH-WFPEkPcKGSGYRCIRINhkmDPlIGqaaQriG lssqe BTG1_HUMAN : 40- 88: rqlqt FSqsLQELLaEHYK-HhWFPEkPcKGSGYRCIRINhkmDPlIGqaaQriG lssqe PC3_RAT : 38- 86: qrlkv FSraLQDALtDHYKhH-WFPEkPsKGSGYRCIRINhkmDPiISkvaSqiG lsqpq PC3_RAT : 38- 86: qrlkv FSraLQDALtDHYK-HhWFPEkPsKGSGYRCIRINhkmDPiISkvaSqiG lsqpq TS21_MOUSE : 38- 86: qrlkv FSraLQDALtDHYKhH-WFPEkPsKGSGYRCIRINhkmDPiISkvaSqiG lsqpq TS21_MOUSE : 38- 86: qrlkv FSraLQDALtDHYK-HhWFPEkPsKGSGYRCIRINhkmDPiISkvaSqiG lsqpq K 11: 119.8124 10( 6) H-x(0,1)-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS]-x-[NPQ]-[DEQ]-L-x(2)-[LP]-x-[EP]-x-[ET] Occurences: 10(6) B910_XENLA : 45- 93: akykn H-WYAEnPmKGQAFRCIRINtyqaiDAVFEkACAEsNVDfNDLglPkEmT iwvdp B915_XENLA : 45- 93: akykt H-WYAEnPtKGQAFRCIRINecqalDAVLEkACTEsNVDfNELglPkEmT iwvdp BTG1_CHICK : 54- 101: aehyk HhWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQELfqLlPsE ltlwv BTG1_CHICK : 55- 101: ehykh H-WFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQELfqLlPsE ltlwv BTG1_HUMAN : 54- 101: aehyk HhWFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQELfrLlPsE ltlwv BTG1_HUMAN : 55- 101: ehykh H-WFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQELfrLlPsE ltlwv PC3_RAT : 52- 99: tdhyk HhWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQLhqLlPsE ltlwv PC3_RAT : 53- 99: dhykh H-WFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQLhqLlPsE ltlwv TS21_MOUSE : 52- 99: tdhyk HhWFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQLhrLlPsE ltlwv TS21_MOUSE : 53- 99: dhykh H-WFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQLhrLlPsE ltlwv L 12: 119.6270 6( 6) L-[QT]-[DET]-[AIL]-L-x-[ADE]-[HK]-Y-K-x(0,1)-H-x(0,1)-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3)-[AD]-[ILP]-x-[AI]-[GSV]-x(3)-[AQS]-x(2)-[EG]-x-[NS]-x-[DPQ] Occurences: 6(6) B910_XENLA : 34- 82: kfaak LTTILfAKYKnH-WYAEnPmKGQAFRCIRINtyqAIdAVfekAcaEsNvD fndlg B915_XENLA : 34- 82: kfaak LTTLLfAKYKtH-WYAEnPtKGQAFRCIRINecqALdAVlekActEsNvD fnelg BTG1_CHICK : 44- 92: tfsqs LQELLaEHYKhH-WFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQ elfql BTG1_CHICK : 44- 92: tfsqs LQELLaEHYK-HhWFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQ elfql BTG1_HUMAN : 44- 92: tfsqs LQELLaEHYKhH-WFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQ elfrl BTG1_HUMAN : 44- 92: tfsqs LQELLaEHYK-HhWFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQ elfrl PC3_RAT : 42- 90: vfsra LQDALtDHYKhH-WFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqP qlhql PC3_RAT : 42- 90: vfsra LQDALtDHYK-HhWFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqP qlhql TS21_MOUSE : 42- 90: vfsra LQDALtDHYKhH-WFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqP qlhrl TS21_MOUSE : 42- 90: vfsra LQDALtDHYK-HhWFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqP qlhrl M 13: 119.4290 6( 6) W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3,5)-D-[AP]-[ILV]-[FIL]-[EGS]-x-[AV]-[AC]-[AQST]-[EQR]-x-[GN]-[LV]-[DS]-x-[NPQ]-[DEQ]-L-x(2)-[LP]-x-[EP]-x-[ET]-[IL] Occurences: 6(6) B910_XENLA : 46- 94: kyknh WYAEnPmKGQAFRCIRINtyqaiDAVFEkACAEsNVDfNDLglPkEmTI wvdpf B915_XENLA : 46- 94: kykth WYAEnPtKGQAFRCIRINecqalDAVLEkACTEsNVDfNELglPkEmTI wvdpf BTG1_CHICK : 56- 102: hykhh WFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQELfqLlPsEL tlwvd BTG1_HUMAN : 56- 102: hykhh WFPEkPcKGSGYRCIRINhkm--DPLIGqAAQRiGLSsQELfrLlPsEL tlwvd PC3_RAT : 54- 100: hykhh WFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQLhqLlPsEL tlwvd TS21_MOUSE : 54- 100: hykhh WFPEkPsKGSGYRCIRINhkm--DPIISkVASQiGLSqPQLhrLlPsEL tlwvd N 14: 108.3867 6( 6) Y-K-x(0,1)-H-x(0,1)-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3)-[AD]-[ILP]-x-[AI]-[GSV]-x(3)-[AQS]-x(2)-[EG]-x-[NS]-x-[DPQ]-x(4)-[GL]-L-P Occurences: 6(6) B910_XENLA : 42- 89: ilfak YKnH-WYAEnPmKGQAFRCIRINtyqAIdAVfekAcaEsNvDfndlGLP kemti B915_XENLA : 42- 89: llfak YKtH-WYAEnPtKGQAFRCIRINecqALdAVlekActEsNvDfnelGLP kemti BTG1_CHICK : 52- 99: llaeh YKhH-WFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQelfqLLP seltl BTG1_CHICK : 52- 99: llaeh YK-HhWFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQelfqLLP seltl BTG1_HUMAN : 52- 99: llaeh YKhH-WFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQelfrLLP seltl BTG1_HUMAN : 52- 99: llaeh YK-HhWFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQelfrLLP seltl PC3_RAT : 50- 97: altdh YKhH-WFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqPqlhqLLP seltl PC3_RAT : 50- 97: altdh YK-HhWFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqPqlhqLLP seltl TS21_MOUSE : 50- 97: altdh YKhH-WFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqPqlhrLLP seltl TS21_MOUSE : 50- 97: altdh YK-HhWFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqPqlhrLLP seltl O 15: 108.3867 6( 6) K-x(0,1)-H-x(0,1)-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3)-[AD]-[ILP]-x-[AI]-[GSV]-x(3)-[AQS]-x(2)-[EG]-x-[NS]-x-[DPQ]-x(4)-[GL]-L-P-x-E Occurences: 6(6) B910_XENLA : 43- 91: lfaky KnH-WYAEnPmKGQAFRCIRINtyqAIdAVfekAcaEsNvDfndlGLPkE mtiwv B915_XENLA : 43- 91: lfaky KtH-WYAEnPtKGQAFRCIRINecqALdAVlekActEsNvDfnelGLPkE mtiwv BTG1_CHICK : 53- 101: laehy KhH-WFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQelfqLLPsE ltlwv BTG1_CHICK : 53- 101: laehy K-HhWFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQelfqLLPsE ltlwv BTG1_HUMAN : 53- 101: laehy KhH-WFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQelfrLLPsE ltlwv BTG1_HUMAN : 53- 101: laehy K-HhWFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQelfrLLPsE ltlwv PC3_RAT : 51- 99: ltdhy KhH-WFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqPqlhqLLPsE ltlwv PC3_RAT : 51- 99: ltdhy K-HhWFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqPqlhqLLPsE ltlwv TS21_MOUSE : 51- 99: ltdhy KhH-WFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqPqlhrLLPsE ltlwv TS21_MOUSE : 51- 99: ltdhy K-HhWFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqPqlhrLLPsE ltlwv P 16: 106.9886 6( 6) L-x-[ADE]-[HK]-Y-K-x(0,1)-H-x(0,1)-W-[FY]-[AP]-E-x-P-x-K-G-[QS]-[AG]-[FY]-R-C-I-R-I-N-x(3)-[AD]-[ILP]-x-[AI]-[GSV]-x(3)-[AQS]-x(2)-[EG]-x-[NS]-x-[DPQ] Occurences: 6(6) B910_XENLA : 38- 82: kltti LfAKYKnH-WYAEnPmKGQAFRCIRINtyqAIdAVfekAcaEsNvD fndlg B915_XENLA : 38- 82: klttl LfAKYKtH-WYAEnPtKGQAFRCIRINecqALdAVlekActEsNvD fnelg BTG1_CHICK : 48- 92: slqel LaEHYKhH-WFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQ elfql BTG1_CHICK : 48- 92: slqel LaEHYK-HhWFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQ elfql BTG1_HUMAN : 48- 92: slqel LaEHYKhH-WFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQ elfrl BTG1_HUMAN : 48- 92: slqel LaEHYK-HhWFPEkPcKGSGYRCIRINhkmDPlIGqaaQriGlSsQ elfrl PC3_RAT : 46- 90: alqda LtDHYKhH-WFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqP qlhql PC3_RAT : 46- 90: alqda LtDHYK-HhWFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqP qlhql TS21_MOUSE : 46- 90: alqda LtDHYKhH-WFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqP qlhrl TS21_MOUSE : 46- 90: alqda LtDHYK-HhWFPEkPsKGSGYRCIRINhkmDPiISkvaSqiGlSqP qlhrl Q 17: 104.4572 6( 6) L-x(0,1)-L-P-x-E-[LM]-T-[IL]-W-V-D-P-[FY]-E-V-[CS]-x-R-x-G-E-[DK]-[GN]-[DS]-[IP]-x-[TV]-[IL]-x-[ES]-x(2)-[GP]-x-[ADG]-[AGT]-x(2)-[AGNQ] Occurences: 6(6) B910_XENLA : 86- 125: vdfnd LgLPkEMTIWVDPFEVCcRyGEKNDPfTIaSfkGkDGynA pkris B915_XENLA : 86- 125: vdfne LgLPkEMTIWVDPFEVCcRyGEKNDPfTIaSfkGkDGynA pkris BTG1_CHICK : 97- 135: qelfq L-LPsELTLWVDPYEVSyRiGEDGSIcVLyEaaPaGGsqN ntnmq BTG1_HUMAN : 97- 135: qelfr L-LPsELTLWVDPYEVSyRiGEDGSIcVLyEasPaGGstQ nstnv PC3_RAT : 95- 133: pqlhq L-LPsELTLWVDPYEVSyRiGEDGSIcVLyEeaPvATsyG lltck TS21_MOUSE : 95- 133: pqlhr L-LPsELTLWVDPYEVSyRiGEDGSIcVLyEeaPvAAsyG lltck R 18: 103.9572 6( 6) L-x(1,2)-L-x(0,1)-P-x-E-[LM]-T-[IL]-W-V-D-P-[FY]-E-V-[CS]-x-R-x-G-E-[DK]-[GN]-[DS]-[IP]-x-[TV]-[IL]-x-[ES]-x(2)-[GP]-x-[ADG]-[AGT]-x(2)-[AGNQ] Occurences: 6(6) B910_XENLA : 86- 125: vdfnd Lg-L-PkEMTIWVDPFEVCcRyGEKNDPfTIaSfkGkDGynA pkris B915_XENLA : 86- 125: vdfne Lg-L-PkEMTIWVDPFEVCcRyGEKNDPfTIaSfkGkDGynA pkris BTG1_CHICK : 94- 135: lssqe LfqLlPsELTLWVDPYEVSyRiGEDGSIcVLyEaaPaGGsqN ntnmq BTG1_HUMAN : 94- 135: lssqe LfrLlPsELTLWVDPYEVSyRiGEDGSIcVLyEasPaGGstQ nstnv PC3_RAT : 92- 133: lsqpq LhqLlPsELTLWVDPYEVSyRiGEDGSIcVLyEeaPvATsyG lltck TS21_MOUSE : 92- 133: lsqpq LhrLlPsELTLWVDPYEVSyRiGEDGSIcVLyEeaPvAAsyG lltck S 19: 95.5266 6( 6) L-P-x-E-[LM]-T-[IL]-W-V-D-P-[FY]-E-V-x(1,3)-Y-x(0,2)-G-E-[DK]-[GN]-[DS]-[IP]-x-[TV]-[IL]-x-[ES]-x(2)-[GP]-x-[ADG]-[AGT]-x(2)-[AGNQ] Occurences: 6(6) B910_XENLA : 88- 125: fndlg LPkEMTIWVDPFEVccrY--GEKNDPfTIaSfkGkDGynA pkris B915_XENLA : 88- 125: fnelg LPkEMTIWVDPFEVccrY--GEKNDPfTIaSfkGkDGynA pkris BTG1_CHICK : 98- 135: elfql LPsELTLWVDPYEVs--YriGEDGSIcVLyEaaPaGGsqN ntnmq BTG1_HUMAN : 98- 135: elfrl LPsELTLWVDPYEVs--YriGEDGSIcVLyEasPaGGstQ nstnv PC3_RAT : 96- 133: qlhql LPsELTLWVDPYEVs--YriGEDGSIcVLyEeaPvATsyG lltck TS21_MOUSE : 96- 133: qlhrl LPsELTLWVDPYEVs--YriGEDGSIcVLyEeaPvAAsyG lltck T 20: 95.1664 6( 6) L-x(0,1)-L-P-x-E-[LM]-T-[IL]-W-V-D-P-[FY]-E-V-x(1,3)-Y-x(3)-[EN]-D-[GP]-x(3)-[AV]-x-[FY]-[EK]-[AEG]-x-[DP]-[AGV]-x-[AGNT]-[AS]-x(4)-[NST] Occurences: 6(6) B910_XENLA : 86- 130: vdfnd LgLPkEMTIWVDPFEVccrYgekNDPftiAsFKGkDGyNApkriS havek B915_XENLA : 86- 130: vdfne LgLPkEMTIWVDPFEVccrYgekNDPftiAsFKGkDGyNApkriS navek BTG1_CHICK : 97- 138: qelfq L-LPsELTLWVDPYEVs--YrigEDGsicVlYEAaPAgGSqnntN mqmvd BTG1_HUMAN : 97- 138: qelfr L-LPsELTLWVDPYEVs--YrigEDGsicVlYEAsPAgGStqnsT nvqmv PC3_RAT : 95- 136: pqlhq L-LPsELTLWVDPYEVs--YrigEDGsicVlYEEaPVaTSygllT cknqm TS21_MOUSE : 95- 136: pqlhr L-LPsELTLWVDPYEVs--YrigEDGsicVlYEEaPVaASygllT cknqm Number of patterns evaluated by Pratt:4858 Total running time: 2 seconds