------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file BROMODOMAIN_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 47 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename BROMODOMAIN_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BDF1_YEAST 687 BRM_DROME 1638 CBP_MOUSE 2441 CCG1_HUMAN 1872 FSH_DROME 2038 GCN5_YEAST 439 RNG3_HUMAN 754 SNF2_YEAST 1703 SPT7_YEAST 1332 STH1_YEAST 1359 YKY8_YEAST 625 YNJ1_CAEEL 2027 Pratt run started at Thu Feb 6 19:00:02 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.6802 16( 12) S-x(4,5)-K-x(3,4)-K-x(2)-K 2: 15.1802 20( 12) K-x(2,4)-K-x(2,3)-K-E 3: 14.6802 25( 12) K-x(2,4)-K-x(2)-K-x(0,2)-E 4: 14.6802 19( 12) L-x(0,2)-L-x(5)-K-x(2,4)-K 5: 14.6802 31( 12) E-x(2,4)-E-x(1,3)-K-x-E 6: 12.5102 28( 12) K-x(4)-K-x(2)-K 7: 12.5102 22( 12) L-x(5)-K-L 8: 12.5102 15( 12) K-x(4)-L-x-T 9: 12.5102 18( 12) P-x(5)-I-K 10: 12.5102 16( 12) L-x(4)-Y-x(4)-K 11: 12.5102 19( 12) L-x(5)-K-x-L 12: 12.5102 20( 12) K-x-E-x-E 13: 12.0102 15( 12) P-x-Y-x(2,3)-I 14: 12.0102 19( 12) E-x(4)-S-x(2,3)-D 15: 12.0102 26( 12) K-x(0,1)-K-x(3)-E 16: 12.0102 47( 12) K-x(4)-K-x(1,2)-K 17: 12.0102 37( 12) K-x(4)-K-x(0,1)-K 18: 12.0102 41( 12) K-x(4,5)-K-x-K 19: 12.0102 22( 12) K-x(3,4)-L-E 20: 12.0102 21( 12) K-x(5)-E-x(0,1)-K Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 15.6802 16( 12) S-x(4,5)-K-x(3,4)-K-x(2)-K B 2: 15.1802 20( 12) K-x(2,4)-K-x(2,3)-K-E C 3: 14.6802 25( 12) K-x(2,4)-K-x(2)-K-x(0,2)-E D 4: 14.6802 19( 12) L-x(0,2)-L-x(5)-K-x(2,4)-K E 5: 14.6802 31( 12) E-x(2,4)-E-x(1,3)-K-x-E F 6: 14.6323 21( 12) K-x(4)-K-x(1,2)-K-[ENS] G 7: 14.4086 14( 12) K-x(4)-K-x(2)-K-[AENST] H 8: 14.3960 14( 12) K-x-[ADPST]-x(2)-L-x-T I 9: 14.2230 13( 12) P-x-Y-x(2,3)-I-x(2)-[NPQS] J 10: 12.5102 22( 12) L-x(5)-K-L K 11: 12.5102 18( 12) P-x(5)-I-K L 12: 12.5102 16( 12) L-x(4)-Y-x(4)-K M 13: 12.5102 19( 12) L-x(5)-K-x-L N 14: 12.5102 20( 12) K-x-E-x-E O 15: 12.0102 19( 12) E-x(4)-S-x(2,3)-D P 16: 12.0102 26( 12) K-x(0,1)-K-x(3)-E Q 17: 12.0102 37( 12) K-x(4)-K-x(0,1)-K R 18: 12.0102 41( 12) K-x(4,5)-K-x-K S 19: 12.0102 22( 12) K-x(3,4)-L-E T 20: 12.0102 21( 12) K-x(5)-E-x(0,1)-K Best patterns with alignements: fitness hits(seqs) Pattern A 1: 15.6802 16( 12) S-x(4,5)-K-x(3,4)-K-x(2)-K Occurences: 16(12) BDF1_YEAST : 510- 524: kgrsg SknassKgrrdKknK lktvv BRM_DROME : 1578- 1590: eiatt Saaav-Kmkl-KlnK slasa CBP_MOUSE : 1579- 1592: etpeg Sqgds-KnakkKnnK ktnkn CBP_MOUSE : 1583- 1596: gsqgd SknakkKnnk-KtnK nkssi CBP_MOUSE : 1583- 1596: gsqgd Sknak-KknnkKtnK nkssi CCG1_HUMAN : 635- 648: qpgph SvqpllKhik-KkaK mreqe FSH_DROME : 675- 689: eirkl SeeasaKkkakKklK ekkks FSH_DROME : 679- 692: lseea SakkkaKkkl-KekK ksigg GCN5_YEAST : 375- 388: epmdl Stmei-KlesnKyqK medfi RNG3_HUMAN : 491- 504: qlaal SqgpisKpkr-KreK kekkk RNG3_HUMAN : 496- 508: sqgpi Skpkr-Krek-KekK kkrka RNG3_HUMAN : 561- 574: sgfgp SggsgtKlpk-KatK tappa SNF2_YEAST : 692- 705: nafld SltravKdqq-KytK emids SPT7_YEAST : 310- 323: nkiyh Sfeyd-KetmiKrlK leesd STH1_YEAST : 1230- 1243: eekpe SkspakKtaa-KktK tksks STH1_YEAST : 1230- 1243: eekpe Skspa-KktaaKktK tksks YKY8_YEAST : 15- 28: teagg Sderp-KylpgKhpK nqekt YNJ1_CAEEL : 1380- 1393: sgkkk Ssknk-KnnlkKnaK mnkkk B 2: 15.1802 20( 12) K-x(2,4)-K-x(2,3)-K-E Occurences: 20(12) BDF1_YEAST : 481- 490: lqqlk KqeleKir-KE rrlar BRM_DROME : 1396- 1405: ddskr KrrkrKnr-KE esddd CBP_MOUSE : 656- 663: hllae Kiy--Kiq-KE leekr CBP_MOUSE : 1052- 1062: mevee KkpevKveaKE eeens CBP_MOUSE : 1053- 1062: eveek Kpev-KveaKE eeens CCG1_HUMAN : 971- 980: vkipn KptqqKdd-KE pqpvk CCG1_HUMAN : 1249- 1256: kgppe Kkp--Kkm-KE rpdlk FSH_DROME : 681- 690: eeasa KkkakKkl-KE kkksi FSH_DROME : 681- 690: eeasa Kkka-KkklKE kkksi FSH_DROME : 682- 690: easak Kkak-Kkl-KE kkksi FSH_DROME : 682- 690: easak Kka--KkklKE kkksi FSH_DROME : 683- 690: asakk Kak--Kkl-KE kkksi FSH_DROME : 1695- 1702: leaae Kek--Knq-KE aaeke GCN5_YEAST : 48- 57: qegtd KenkgKfe-KE terig GCN5_YEAST : 126- 134: knifq Kqlp-Kmp-KE yiarl RNG3_HUMAN : 497- 506: qgpis Kpkr-KrekKE kkkkr SNF2_YEAST : 646- 654: erdeq Krae-Kka-KE rlqal SNF2_YEAST : 698- 706: ltrav Kdqq-Kyt-KE midsh SPT7_YEAST : 219- 227: eeeig Kne--KpqnKE giskf STH1_YEAST : 992- 1001: rsade KilfdKid-KE rmnqe YKY8_YEAST : 423- 433: hlkip KynviKsmqKE mqsls YNJ1_CAEEL : 663- 670: hllae Kiy--Kiq-KE lqekk C 3: 14.6802 25( 12) K-x(2,4)-K-x(2)-K-x(0,2)-E Occurences: 25(12) BDF1_YEAST : 481- 490: lqqlk KqeleKirK--E rrlar BRM_DROME : 496- 504: arate Kle--KqqKl-E aerkr BRM_DROME : 1396- 1405: ddskr KrrkrKnrK--E esddd BRM_DROME : 1396- 1406: ddskr KrrkrKnrKe-E sddds CBP_MOUSE : 656- 663: hllae Kiy--KiqK--E leekr CBP_MOUSE : 656- 665: hllae Kiy--KiqKelE ekrrt CCG1_HUMAN : 641- 651: vqpll Khik-KkaKmrE qerqa CCG1_HUMAN : 971- 980: vkipn KptqqKddK--E pqpvk CCG1_HUMAN : 1249- 1256: kgppe Kkp--KkmK--E rpdlk FSH_DROME : 681- 690: eeasa KkkakKklK--E kkksi FSH_DROME : 682- 690: easak Kkak-KklK--E kkksi FSH_DROME : 683- 690: asakk Kak--KklK--E kkksi FSH_DROME : 1695- 1702: leaae Kek--KnqK--E aaeke GCN5_YEAST : 48- 57: qegtd KenkgKfeK--E terig GCN5_YEAST : 48- 59: qegtd KenkgKfeKetE riggs GCN5_YEAST : 126- 134: knifq Kqlp-KmpK--E yiarl GCN5_YEAST : 380- 390: stmei KlesnKyqKm-E dfiyd RNG3_HUMAN : 497- 506: qgpis Kpkr-KreKk-E kkkkr RNG3_HUMAN : 504- 514: krkre KkekkKkrKa-E khrgr RNG3_HUMAN : 505- 514: rkrek Kekk-KkrKa-E khrgr SNF2_YEAST : 646- 654: erdeq Krae-KkaK--E rlqal SNF2_YEAST : 698- 706: ltrav Kdqq-KytK--E midsh SNF2_YEAST : 1386- 1396: dkqar KqrtkKedKs-E aidgn SPT7_YEAST : 315- 325: sfeyd KetmiKrlKl-E esdkm SPT7_YEAST : 315- 326: sfeyd KetmiKrlKleE sdkmi SPT7_YEAST : 603- 612: gkvse Kdss-KtvKd-E aptnd STH1_YEAST : 992- 1001: rsade KilfdKidK--E rmnqe YKY8_YEAST : 20- 31: sderp KylpgKhpKnqE ktphv YNJ1_CAEEL : 663- 670: hllae Kiy--KiqK--E lqekk D 4: 14.6802 19( 12) L-x(0,2)-L-x(5)-K-x(2,4)-K Occurences: 19(12) BDF1_YEAST : 159- 169: qqkha L--LaikavKrl--K darpf BRM_DROME : 1036- 1048: qskgv L--LtdgseKgkhgK ggaka CBP_MOUSE : 652- 662: deyyh L--LaekiyKiq--K eleek CCG1_HUMAN : 995- 1009: gtdad LrrLslknaKqllrK fgvpe CCG1_HUMAN : 1231- 1244: riqeq LrrLkrnqeKekl-K gppek CCG1_HUMAN : 1474- 1487: isqsm Ld-LcdeklKekedK larle FSH_DROME : 39- 52: rntnq LqyLiktvmKviw-K hhfsw FSH_DROME : 145- 156: mpkee Le-LepvtaKgg--K kkqra FSH_DROME : 145- 157: mpkee Le-LepvtaKggk-K kqrap FSH_DROME : 145- 158: mpkee Le-LepvtaKggkkK qrapa FSH_DROME : 1687- 1698: kerdr Lk-LleaaeKek--K nqkea GCN5_YEAST : 117- 130: enmmv LtgLknifqKqlp-K mpkey RNG3_HUMAN : 32- 45: rvtnq LqyLhkvvmKalw-K hqfaw RNG3_HUMAN : 657- 671: leryv LscLrkkprKpytiK kpvgk SNF2_YEAST : 992- 1006: lrpfl LrrLkkdveKelpdK vekvv SPT7_YEAST : 278- 291: dderr Lv-LnisisKetlsK lktnn SPT7_YEAST : 420- 433: isdye LkhLimdvrKnrs-K wtsde STH1_YEAST : 695- 709: lrpfl LrrLkkeveKdlpdK vekvi YKY8_YEAST : 194- 206: kinqa L--LgasspKnlddK vklse YNJ1_CAEEL : 632- 644: mndnr LkdLiayarKve--K emfes YNJ1_CAEEL : 659- 669: eeyyh L--LaekiyKiq--K elqek E 5: 14.6802 31( 12) E-x(2,4)-E-x(1,3)-K-x-E Occurences: 31(12) BDF1_YEAST : 114- 123: qgtkq Edld-Ens-KqE lpmev BRM_DROME : 495- 504: earat Ekl--EkqqKlE aerkr CBP_MOUSE : 1008- 1017: qtdda EpeptEs--KgE prsem CBP_MOUSE : 1010- 1017: ddaep Ept--Es--KgE prsem CBP_MOUSE : 1036- 1045: sqvke EtdttEq--KsE pmeve CBP_MOUSE : 1045- 1055: teqks EpmevEek-KpE vkvea CBP_MOUSE : 1048- 1055: ksepm Eve--Ek--KpE vkvea CBP_MOUSE : 1050- 1059: epmev EekkpEv--KvE akeee CBP_MOUSE : 1051- 1059: pmeve Ekkp-Ev--KvE akeee CBP_MOUSE : 1055- 1063: eekkp Evkv-Ea--KeE eenss CBP_MOUSE : 1556- 1567: eesik EleqeEeerKkE estaa CBP_MOUSE : 1558- 1567: sikel EqeeeEr--KkE estaa CBP_MOUSE : 1558- 1567: sikel Eqee-Eer-KkE estaa CBP_MOUSE : 1558- 1568: sikel EqeeeErk-KeE staas CBP_MOUSE : 1558- 1567: sikel Eqe--EeerKkE estaa CBP_MOUSE : 1558- 1568: sikel Eqee-EerkKeE staas CBP_MOUSE : 1560- 1567: keleq Eee--Er--KkE estaa CBP_MOUSE : 1560- 1568: keleq Eee--Erk-KeE staas CCG1_HUMAN : 1057- 1065: rfsva Ehq--Ery-KeE cqrif FSH_DROME : 1032- 1040: gkskd Eqma-Ek--KqE lekrl GCN5_YEAST : 36- 44: eeiqp Eqa--Etn-KqE gtdke GCN5_YEAST : 44- 55: etnkq EgtdkEnkgKfE keter GCN5_YEAST : 94- 101: rpsvv Een--Eg--KiE frvvn RNG3_HUMAN : 679- 688: vgktk EelalEk--KrE lekrl RNG3_HUMAN : 680- 688: gktke Elal-Ek--KrE lekrl SNF2_YEAST : 590- 600: lyknh EllklErk-KtE avarl SPT7_YEAST : 210- 221: tlldv EekeeEeigKnE kpqnk SPT7_YEAST : 211- 221: lldve EkeeeEig-KnE kpqnk SPT7_YEAST : 211- 221: lldve Ekee-EeigKnE kpqnk SPT7_YEAST : 213- 221: dveek Eee--Eig-KnE kpqnk SPT7_YEAST : 649- 657: nvnkn Eik--Eng-KnE eqdmv SPT7_YEAST : 658- 669: ngkne EqdmvEessKtE dsskd STH1_YEAST : 1034- 1043: pkvfr Edie-Ehf-KkE dsepl STH1_YEAST : 1034- 1043: pkvfr Edi--EehfKkE dsepl YKY8_YEAST : 211- 221: kvkls Epfm-ElvdKdE lpeyy YKY8_YEAST : 305- 314: lnerg Einl-Efd-KfE fenyl YKY8_YEAST : 392- 401: liaip EtvqsEv--KnE rstts YNJ1_CAEEL : 842- 853: kdgva EskpkEqqaKrE ptppp F 6: 14.6323 21( 12) K-x(4)-K-x(1,2)-K-[ENS] Occurences: 21(12) BDF1_YEAST : 481- 490: lqqlk KqeleKirKE rrlar BRM_DROME : 613- 621: mvkqh KddqmKk-KE eegkr BRM_DROME : 1394- 1402: eedds KrkrrKr-KN rkees BRM_DROME : 1396- 1405: ddskr KrrkrKnrKE esddd CBP_MOUSE : 1265- 1273: qttis KdqfeKk-KN dtldp CBP_MOUSE : 1588- 1597: sknak KknnkKtnKN kssis CCG1_HUMAN : 971- 980: vkipn KptqqKddKE pqpvk FSH_DROME : 681- 690: eeasa KkkakKklKE kkksi FSH_DROME : 682- 690: easak KkakkKl-KE kkksi FSH_DROME : 686- 694: kkkak KklkeKk-KS igggs FSH_DROME : 1706- 1715: keaae KeqqrKhhKS ssssl GCN5_YEAST : 48- 57: qegtd KenkgKfeKE terig GCN5_YEAST : 422- 430: anrle KffnnKv-KE ipeys RNG3_HUMAN : 671- 679: kpyti KkpvgKt-KE elale SNF2_YEAST : 646- 654: erdeq KraekKa-KE rlqal SNF2_YEAST : 1386- 1395: dkqar KqrtkKedKS eaidg SPT7_YEAST : 1199- 1208: dyers KayiaKqsKS sandk STH1_YEAST : 992- 1001: rsade KilfdKidKE rmnqe STH1_YEAST : 1240- 1248: kktaa KktktKs-KS lgifp YKY8_YEAST : 20- 29: sderp KylpgKhpKN qektp YNJ1_CAEEL : 1377- 1386: ggdsg KkkssKnkKN nlkkn G 7: 14.4086 14( 12) K-x(4)-K-x(2)-K-[AENST] Occurences: 14(12) BDF1_YEAST : 481- 490: lqqlk KqeleKirKE rrlar BRM_DROME : 1396- 1405: ddskr KrrkrKnrKE esddd CBP_MOUSE : 1588- 1597: sknak KknnkKtnKN kssis CCG1_HUMAN : 971- 980: vkipn KptqqKddKE pqpvk FSH_DROME : 681- 690: eeasa KkkakKklKE kkksi FSH_DROME : 1706- 1715: keaae KeqqrKhhKS ssssl GCN5_YEAST : 48- 57: qegtd KenkgKfeKE terig RNG3_HUMAN : 504- 513: krkre KkekkKkrKA ekhrg SNF2_YEAST : 1386- 1395: dkqar KqrtkKedKS eaidg SPT7_YEAST : 1199- 1208: dyers KayiaKqsKS sandk STH1_YEAST : 992- 1001: rsade KilfdKidKE rmnqe STH1_YEAST : 1235- 1244: skspa KktaaKktKT ksksl YKY8_YEAST : 20- 29: sderp KylpgKhpKN qektp YNJ1_CAEEL : 1377- 1386: ggdsg KkkssKnkKN nlkkn H 8: 14.3960 14( 12) K-x-[ADPST]-x(2)-L-x-T Occurences: 14(12) BDF1_YEAST : 193- 200: yfnyi KrPmdLsT ierkl BDF1_YEAST : 360- 367: yfdyv KePmdLgT iakkl BRM_DROME : 911- 918: knhhc KlTqvLnT hyiap CBP_MOUSE : 1131- 1138: yfdiv KnPmdLsT ikrkl CCG1_HUMAN : 865- 872: nwwvl KsDfrLpT eeeir FSH_DROME : 522- 529: yhdii KkPmdLgT vkrkm GCN5_YEAST : 369- 376: yydfi KePmdLsT meikl RNG3_HUMAN : 344- 351: yhdii KhPmdLsT vkrkm SNF2_YEAST : 837- 844: ssefa KwAptLrT isfkg SNF2_YEAST : 905- 912: knaqs KlSltLnT hyhad SPT7_YEAST : 483- 490: yhqii KkSmdLnT vlkkl STH1_YEAST : 540- 547: tlefe KwApsLnT iiykg YKY8_YEAST : 520- 527: ltssl KdTetLlT inkep YNJ1_CAEEL : 908- 915: yheii KrPmdLeT vhkkl I 9: 14.2230 13( 12) P-x-Y-x(2,3)-I-x(2)-[NPQS] Occurences: 13(12) BDF1_YEAST : 186- 195: vkldi PfYfnyIkrP mdlst BRM_DROME : 1461- 1470: srqrl PdYyeiIkrP vdikk CBP_MOUSE : 1124- 1132: qllgi PdYfd-IvkN pmdls CCG1_HUMAN : 1538- 1547: nkkfv PdYykvIvnP mdlet FSH_DROME : 71- 79: kklnl PdYhk-IikQ pmdmg FSH_DROME : 71- 80: kklnl PdYhkiIkqP mdmgt GCN5_YEAST : 362- 371: nkeev PdYydfIkeP mdlst RNG3_HUMAN : 64- 72: vklgl PdYhk-IikQ pmdmg RNG3_HUMAN : 64- 73: vklgl PdYhkiIkqP mdmgt SNF2_YEAST : 1586- 1595: skaly PdYymiIkyP vafdn SPT7_YEAST : 476- 485: skrea PnYhqiIkkS mdlnt STH1_YEAST : 1288- 1297: skrdy PdYfkvIekP maidi YKY8_YEAST : 90- 99: srkfh PqYyykIqqP msine YKY8_YEAST : 223- 231: dkdel PeYye-IvhS pmals YNJ1_CAEEL : 901- 910: kllni PdYheiIkrP mdlet J 10: 12.5102 22( 12) L-x(5)-K-L Occurences: 22(12) BDF1_YEAST : 198- 205: krpmd LstierKL nvgay BDF1_YEAST : 365- 372: kepmd LgtiakKL ndwqy BRM_DROME : 1103- 1110: gkfel LdrilpKL katnh BRM_DROME : 1233- 1240: veeri LaaaryKL nmdek BRM_DROME : 1447- 1454: qdgrt LsepfmKL psrqr CBP_MOUSE : 1136- 1143: knpmd LstikrKL dtgqy CCG1_HUMAN : 1474- 1481: isqsm LdlcdeKL keked CCG1_HUMAN : 1481- 1488: lcdek LkekedKL arlek FSH_DROME : 657- 664: ersar LkmlesKL lglqe FSH_DROME : 667- 674: skllg LqeeirKL seeas FSH_DROME : 960- 967: dekrq LsldinKL pgdkl GCN5_YEAST : 374- 381: kepmd LstmeiKL esnky RNG3_HUMAN : 603- 610: dekrq LsldinKL pgekl SNF2_YEAST : 1092- 1099: gkfel LdrilpKL katgh SNF2_YEAST : 1222- 1229: veevi LeraykKL didgk SPT7_YEAST : 18- 25: tnaka LlklteKL fnknf SPT7_YEAST : 488- 495: kksmd LntvlkKL ksfqy SPT7_YEAST : 1070- 1077: kktkk LqdikqKL esflr STH1_YEAST : 926- 933: veevi LeramqKL didgk YKY8_YEAST : 175- 182: evkak LlhylnKL vdate YNJ1_CAEEL : 873- 880: dlikf LlpvweKL dksed YNJ1_CAEEL : 913- 920: krpmd LetvhkKL yagqy K 11: 12.5102 18( 12) P-x(5)-I-K Occurences: 18(12) BDF1_YEAST : 186- 193: vkldi PfyfnyIK rpmdl BRM_DROME : 1461- 1468: srqrl PdyyeiIK rpvdi CBP_MOUSE : 307- 314: mvnsl PafptdIK ntsvt CBP_MOUSE : 1133- 1140: divkn PmdlstIK rkldt CCG1_HUMAN : 604- 611: rqpff PthmgpIK lrqfh FSH_DROME : 71- 78: kklnl PdyhkiIK qpmdm FSH_DROME : 80- 87: kiikq PmdmgtIK krlen FSH_DROME : 388- 395: davip PqqpakIK kgvkr GCN5_YEAST : 362- 369: nkeev PdyydfIK epmdl RNG3_HUMAN : 64- 71: vklgl PdyhkiIK qpmdm RNG3_HUMAN : 73- 80: kiikq PmdmgtIK rrlen RNG3_HUMAN : 664- 671: clrkk PrkpytIK kpvgk SNF2_YEAST : 1586- 1593: skaly PdyymiIK ypvaf SPT7_YEAST : 476- 483: skrea PnyhqiIK ksmdl STH1_YEAST : 1202- 1209: skkkk PkltvkIK lnktt YKY8_YEAST : 99- 106: ykiqq PmsineIK srdye YNJ1_CAEEL : 901- 908: kllni PdyheiIK rpmdl YNJ1_CAEEL : 1529- 1536: pttqh PhemekIK sligg L 12: 12.5102 16( 12) L-x(4)-Y-x(4)-K Occurences: 16(12) BDF1_YEAST : 183- 193: vdpvk LdipfYfnyiK rpmdl BRM_DROME : 876- 886: kfnvl LttyeYvikdK avlak CBP_MOUSE : 1121- 1131: vdpql LgipdYfdivK npmdl CBP_MOUSE : 1618- 1628: nvsnd LsqklYatmeK hkevf CCG1_HUMAN : 807- 817: hirdf LqvfiYrlfwK skdrp FSH_DROME : 68- 78: vdakk LnlpdYhkiiK qpmdm FSH_DROME : 512- 522: vdaem LglhdYhdiiK kpmdl GCN5_YEAST : 255- 265: mqcsm LprirYldagK illlq RNG3_HUMAN : 61- 71: vdavk LglpdYhkiiK qpmdm RNG3_HUMAN : 334- 344: vdasa LglhdYhdiiK hpmdl SNF2_YEAST : 1018- 1028: ckmsa LqqimYqqmlK yrrlf SPT7_YEAST : 750- 760: raeic LkrteYfkngK lnsds STH1_YEAST : 573- 583: nfdvl LttyeYiikdK sllsk STH1_YEAST : 721- 731: cklsg LqqqlYqqmlK hnalf YKY8_YEAST : 450- 460: ykpyk LiqqiYifssK nlysq YNJ1_CAEEL : 898- 908: vdakl LnipdYheiiK rpmdl M 13: 12.5102 19( 12) L-x(5)-K-x-L Occurences: 19(12) BDF1_YEAST : 160- 168: qkhal LaikavKrL kdarp BRM_DROME : 773- 781: mvngt LkeyqiKgL ewlvs CBP_MOUSE : 1339- 1347: rlgnh LedrvnKfL rrqnh CBP_MOUSE : 1500- 1508: pkpkr LqewykKmL dkafa CCG1_HUMAN : 58- 66: egesv LddeckKhL aglga CCG1_HUMAN : 998- 1006: adlrr LslknaKqL lrkfg CCG1_HUMAN : 1430- 1438: mdlqt LrenvrKrL ypsre FSH_DROME : 657- 665: ersar LkmlesKlL glqee GCN5_YEAST : 120- 128: mvltg LknifqKqL pkmpk RNG3_HUMAN : 35- 43: nqlqy LhkvvmKaL wkhqf SNF2_YEAST : 767- 775: lvggt LkdyqiKgL qwmvs SNF2_YEAST : 995- 1003: fllrr LkkdveKeL pdkve SNF2_YEAST : 1123- 1131: imedf LryiniKyL rldgh SPT7_YEAST : 783- 791: fdqlf LeykeqKaL esyrq STH1_YEAST : 698- 706: fllrr LkkeveKdL pdkve YKY8_YEAST : 195- 203: inqal LgasspKnL ddkvk YKY8_YEAST : 379- 387: tedyl LnpnnfKkL iaipe YKY8_YEAST : 462- 470: fsskn LysqatKpL lgsrp YNJ1_CAEEL : 1290- 1298: pkpkr LqdwykKmL ekgvq N 14: 12.5102 20( 12) K-x-E-x-E Occurences: 20(12) BDF1_YEAST : 481- 485: lqqlk KqElE kirke BRM_DROME : 502- 506: lekqq KlEaE rkrrq BRM_DROME : 557- 561: aereq KkEqE rieke BRM_DROME : 619- 623: ddqmk KkEeE gkrli BRM_DROME : 1000- 1004: llrrl KkEvE hqlpd BRM_DROME : 1310- 1314: mdaer KkEdE eihpg CBP_MOUSE : 1061- 1065: vkvea KeEeE nssnd CCG1_HUMAN : 370- 374: gfklr KtEhE pviks FSH_DROME : 142- 146: iesmp KeElE lepvt FSH_DROME : 1038- 1042: qmaek KqElE krlqd GCN5_YEAST : 53- 57: kenkg KfEkE terig RNG3_HUMAN : 686- 690: lalek KrElE krlqd SNF2_YEAST : 392- 396: qtesk KeEnE tisnv SNF2_YEAST : 1306- 1310: dedrs KkEeE lgvks SPT7_YEAST : 212- 216: ldvee KeEeE igkne STH1_YEAST : 699- 703: llrrl KkEvE kdlpd STH1_YEAST : 1179- 1183: engga KvEeE vksss YKY8_YEAST : 312- 316: nlefd KfEfE nylai YNJ1_CAEEL : 641- 645: iayar KvEkE mfesa YNJ1_CAEEL : 1868- 1872: rlkaa KtEeE retvf O 15: 12.0102 19( 12) E-x(4)-S-x(2,3)-D Occurences: 19(12) BDF1_YEAST : 412- 421: mghrl EevfnSkwaD rpnld BRM_DROME : 693- 701: widde EdscgSnd-D hkpkv CBP_MOUSE : 1062- 1070: kveak EeeenSsn-D tasqs CBP_MOUSE : 1574- 1582: staas EtpegSqg-D sknak CCG1_HUMAN : 98- 106: alvnd EgwvrSte-D avdys CCG1_HUMAN : 178- 187: dsitg EkvdfSsssD sesem CCG1_HUMAN : 1714- 1723: asvly EdllmSegeD deeda CCG1_HUMAN : 1776- 1785: mdmen EesmmSyegD ggeas CCG1_HUMAN : 1805- 1814: ygsye EpdpkSntqD tsfss FSH_DROME : 1581- 1589: ipkpi EsmmpSpp-D kqqlq FSH_DROME : 1958- 1966: plgam EsgrkSvh-D aqpqi GCN5_YEAST : 430- 439: nnkvk EipeyShliD RNG3_HUMAN : 455- 464: edeed EeeeeSessD seeer SNF2_YEAST : 1251- 1259: tseeq EallrSll-D aeeer SPT7_YEAST : 596- 604: hmlak EngkvSek-D ssktv STH1_YEAST : 1073- 1081: fleav EddnmSle-D aikkr YKY8_YEAST : 243- 252: vkqnl EigqySkiyD fiidm YNJ1_CAEEL : 29- 37: alesl EafptSsk-D tdvdn YNJ1_CAEEL : 860- 868: tpppt EdtvfSqe-D likfl P 16: 12.0102 26( 12) K-x(0,1)-K-x(3)-E Occurences: 26(12) BDF1_YEAST : 480- 485: elqql K-KqelE kirke BRM_DROME : 618- 623: kddqm K-KkeeE gkrli BRM_DROME : 1310- 1315: mdaer K-KedeE ihpgr BRM_DROME : 1399- 1405: krkrr KrKnrkE esddd CBP_MOUSE : 65- 71: pdaas KhKqlsE llrgg CBP_MOUSE : 1496- 1502: dqkip KpKrlqE wykkm CCG1_HUMAN : 263- 268: arrkr K-KkhrE liqee CCG1_HUMAN : 943- 949: fiaam KgKcllE vtgva CCG1_HUMAN : 1242- 1248: nqeke KlKgppE kkpkk CCG1_HUMAN : 1250- 1256: gppek KpKkmkE rpdlk FSH_DROME : 685- 690: akkka K-KklkE kkksi FSH_DROME : 1037- 1042: eqmae K-KqelE krlqd FSH_DROME : 1697- 1702: aaeke K-KnqkE aaeke GCN5_YEAST : 51- 57: tdken KgKfekE terig GCN5_YEAST : 427- 433: kffnn KvKeipE yshli RNG3_HUMAN : 497- 503: qgpis KpKrkrE kkekk RNG3_HUMAN : 508- 514: ekkek KkKrkaE khrgr RNG3_HUMAN : 509- 514: kkekk K-KrkaE khrgr RNG3_HUMAN : 685- 690: elale K-KrelE krlqd SNF2_YEAST : 391- 396: tqtes K-KeenE tisnv SNF2_YEAST : 1453- 1458: prgrp K-KvklE gsens SPT7_YEAST : 1158- 1163: tkvqa K-KiqpE esdsi STH1_YEAST : 238- 244: rmdtf KiKalvE lkslk STH1_YEAST : 1041- 1046: ieehf K-KedsE plgri YKY8_YEAST : 5- 11: mvvk KrKlatE aggsd YNJ1_CAEEL : 1088- 1093: calhd K-KvypE gfice Q 17: 12.0102 37( 12) K-x(4)-K-x(0,1)-K Occurences: 37(12) BDF1_YEAST : 327- 333: cqsvl KelmaK-K hasyn BDF1_YEAST : 516- 522: knass KgrrdK-K nklkt BRM_DROME : 581- 587: eegyr KlidqK-K dkrla BRM_DROME : 613- 619: mvkqh KddqmK-K keeeg BRM_DROME : 613- 620: mvkqh KddqmKkK eeegk BRM_DROME : 730- 737: ndeda KdlitKaK vedde BRM_DROME : 1394- 1401: eedds KrkrrKrK nrkee CBP_MOUSE : 1265- 1271: qttis KdqfeK-K kndtl CBP_MOUSE : 1265- 1272: qttis KdqfeKkK ndtld CBP_MOUSE : 1587- 1593: dskna KkknnK-K tnknk CCG1_HUMAN : 531- 537: skesk KesslK-K srill CCG1_HUMAN : 641- 648: vqpll KhikkKaK mreqe CCG1_HUMAN : 1235- 1242: qlrrl KrnqeKeK lkgpp CCG1_HUMAN : 1244- 1250: ekekl KgppeK-K pkkmk FSH_DROME : 489- 495: cneil KelfsK-K hsgya FSH_DROME : 681- 687: eeasa KkkakK-K lkekk FSH_DROME : 682- 689: easak KkakkKlK ekkks FSH_DROME : 686- 692: kkkak KklkeK-K ksigg FSH_DROME : 686- 693: kkkak KklkeKkK siggg FSH_DROME : 687- 693: kkakk KlkekK-K siggg FSH_DROME : 1023- 1030: rkkth KkpsgKsK deqma GCN5_YEAST : 422- 429: anrle KffnnKvK eipey RNG3_HUMAN : 228- 235: aqpla KkkgvKrK adttt RNG3_HUMAN : 311- 317: cngil KellsK-K haaya RNG3_HUMAN : 499- 505: piskp KrkreK-K ekkkk RNG3_HUMAN : 504- 510: krkre KkekkK-K rkaek RNG3_HUMAN : 505- 512: rkrek KekkkKrK aekhr RNG3_HUMAN : 666- 672: rkkpr KpytiK-K pvgkt RNG3_HUMAN : 671- 678: kpyti KkpvgKtK eelal SNF2_YEAST : 646- 653: erdeq KraekKaK erlqa SPT7_YEAST : 286- 293: nisis KetlsKlK tnnve SPT7_YEAST : 1069- 1076: gkktk KlqdiKqK lesfl STH1_YEAST : 1235- 1241: skspa KktaaK-K tktks STH1_YEAST : 1236- 1243: kspak KtaakKtK tksks STH1_YEAST : 1240- 1247: kktaa KktktKsK slgif YKY8_YEAST : 201- 208: gassp KnlddKvK lsepf YNJ1_CAEEL : 669- 675: iykiq KelqeK-K nsrln YNJ1_CAEEL : 1377- 1384: ggdsg KkkssKnK knnlk YNJ1_CAEEL : 1379- 1385: dsgkk KssknK-K nnlkk YNJ1_CAEEL : 1384- 1390: ksskn KknnlK-K nakmn R 18: 12.0102 41( 12) K-x(4,5)-K-x-K Occurences: 41(12) BDF1_YEAST : 516- 524: knass KgrrdkKnK lktvv BRM_DROME : 581- 589: eegyr KlidqkKdK rlafl BRM_DROME : 613- 620: mvkqh Kddqm-KkK eeegk BRM_DROME : 730- 737: ndeda Kdlit-KaK vedde BRM_DROME : 1394- 1401: eedds Krkrr-KrK nrkee CBP_MOUSE : 1265- 1272: qttis Kdqfe-KkK ndtld CCG1_HUMAN : 641- 648: vqpll Khikk-KaK mreqe CCG1_HUMAN : 699- 707: vgmat KiknyyKrK pgkdp CCG1_HUMAN : 1235- 1242: qlrrl Krnqe-KeK lkgpp CCG1_HUMAN : 1244- 1252: ekekl KgppekKpK kmker CCG1_HUMAN : 1255- 1263: kpkkm KerpdlKlK cgacg CCG1_HUMAN : 1347- 1355: vlkfp KqqlppKkK rrvgt FSH_DROME : 393- 401: pqqpa KikkgvKrK adttt FSH_DROME : 681- 689: eeasa KkkakkKlK ekkks FSH_DROME : 682- 689: easak Kkakk-KlK ekkks FSH_DROME : 683- 691: asakk KakkklKeK kksig FSH_DROME : 685- 693: akkka KkklkeKkK siggg FSH_DROME : 686- 693: kkkak Kklke-KkK siggg FSH_DROME : 1023- 1030: rkkth Kkpsg-KsK deqma GCN5_YEAST : 422- 429: anrle Kffnn-KvK eipey RNG3_HUMAN : 228- 235: aqpla Kkkgv-KrK adttt RNG3_HUMAN : 499- 507: piskp KrkrekKeK kkkrk RNG3_HUMAN : 501- 509: skpkr KrekkeKkK krkae RNG3_HUMAN : 504- 512: krkre KkekkkKrK aekhr RNG3_HUMAN : 505- 512: rkrek Kekkk-KrK aekhr RNG3_HUMAN : 671- 678: kpyti Kkpvg-KtK eelal SNF2_YEAST : 646- 653: erdeq Kraek-KaK erlqa SNF2_YEAST : 1006- 1014: kelpd KvekvvKcK msalq SPT7_YEAST : 286- 293: nisis Ketls-KlK tnnve SPT7_YEAST : 329- 337: leesd KmiekgKkK rsrsd SPT7_YEAST : 1068- 1076: fgkkt KklqdiKqK lesfl SPT7_YEAST : 1069- 1076: gkktk Klqdi-KqK lesfl SPT7_YEAST : 1248- 1256: lpptg KisttyKkK piasa STH1_YEAST : 709- 717: kdlpd KvekviKcK lsglq STH1_YEAST : 1201- 1209: eskkk KpkltvKiK lnktt STH1_YEAST : 1235- 1243: skspa KktaakKtK tksks STH1_YEAST : 1236- 1243: kspak Ktaak-KtK tksks STH1_YEAST : 1240- 1247: kktaa Kktkt-KsK slgif YKY8_YEAST : 201- 208: gassp Knldd-KvK lsepf YNJ1_CAEEL : 1377- 1384: ggdsg Kkkss-KnK knnlk YNJ1_CAEEL : 1390- 1398: knnlk KnakmnKkK agsit S 19: 12.0102 22( 12) K-x(3,4)-L-E Occurences: 22(12) BDF1_YEAST : 480- 485: elqql Kkqe-LE kirke BRM_DROME : 499- 504: tekle Kqqk-LE aerkr CBP_MOUSE : 659- 665: aekiy KiqkeLE ekrrt CCG1_HUMAN : 943- 949: fiaam KgkclLE vtgva CCG1_HUMAN : 1487- 1492: keked Klar-LE kainp CCG1_HUMAN : 1622- 1627: dicta Keaa-LE eaele FSH_DROME : 142- 148: iesmp KeeleLE pvtak FSH_DROME : 1037- 1042: eqmae Kkqe-LE krlqd GCN5_YEAST : 22- 27: tdpev Krvk-LE nnvee GCN5_YEAST : 415- 421: ntsyy KyanrLE kffnn RNG3_HUMAN : 678- 684: pvgkt KeelaLE kkrel RNG3_HUMAN : 685- 690: elale Kkre-LE krlqd SNF2_YEAST : 1314- 1319: eelgv Ksrl-LE kselp SNF2_YEAST : 1453- 1458: prgrp Kkvk-LE gsens SPT7_YEAST : 320- 325: ketmi Krlk-LE esdkm SPT7_YEAST : 786- 792: lfley KeqkaLE syrqk STH1_YEAST : 70- 75: iqnhp Kenk-LE ikaie STH1_YEAST : 170- 175: fnaka Kslg-LE skfsn STH1_YEAST : 1212- 1217: kikln Kttv-LE nndgk YKY8_YEAST : 410- 415: tsdie Ktns-LE sehlk YNJ1_CAEEL : 908- 914: yheii KrpmdLE tvhkk YNJ1_CAEEL : 1122- 1128: klphn KlstfLE drvng T 20: 12.0102 21( 12) K-x(5)-E-x(0,1)-K Occurences: 21(12) BDF1_YEAST : 300- 308: hppks KdiypyEsK kpksk BRM_DROME : 558- 565: ereqk KeqeriE-K ermrr CBP_MOUSE : 659- 667: aekiy KiqkelEeK rrtrl CBP_MOUSE : 1053- 1061: eveek KpevkvEaK eeeen CBP_MOUSE : 1621- 1628: ndlsq KlyatmE-K hkevf CCG1_HUMAN : 899- 906: aeqrl KdagygE-K sffap CCG1_HUMAN : 1235- 1242: qlrrl KrnqekE-K lkgpp CCG1_HUMAN : 1242- 1249: nqeke KlkgppE-K kpkkm CCG1_HUMAN : 1242- 1250: nqeke KlkgppEkK pkkmk FSH_DROME : 950- 957: eedta KpmsydE-K rqlsl FSH_DROME : 1030- 1037: psgks KdeqmaE-K kqele FSH_DROME : 1030- 1038: psgks KdeqmaEkK qelek FSH_DROME : 1688- 1695: erdrl KlleaaE-K ekknq GCN5_YEAST : 415- 422: ntsyy KyanrlE-K ffnnk RNG3_HUMAN : 497- 504: qgpis KpkrkrE-K kekkk RNG3_HUMAN : 497- 505: qgpis KpkrkrEkK ekkkk RNG3_HUMAN : 508- 515: ekkek KkkrkaE-K hrgra RNG3_HUMAN : 678- 685: pvgkt KeelalE-K krele RNG3_HUMAN : 678- 686: pvgkt KeelalEkK relek SNF2_YEAST : 1386- 1394: dkqar KqrtkkEdK seaid SPT7_YEAST : 559- 566: radle KeiedmE-K dkdye STH1_YEAST : 238- 246: rmdtf KikalvElK slkll YKY8_YEAST : 25- 32: kylpg KhpknqE-K tphvd YKY8_YEAST : 181- 188: lhyln KlvdatE-K kinqa YKY8_YEAST : 181- 189: lhyln KlvdatEkK inqal YNJ1_CAEEL : 1410- 1417: nevad KlysqfE-K hkevf Number of patterns evaluated by Pratt:16934 Total running time: 49 seconds