------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file BETA_LACTAMASE_D PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename BETA_LACTAMASE_D.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BLAD_KLEPN 279 BLL1_PSEAE 260 BLO1_ECOLI 276 BLO2_SALTY 275 BLO5_PSEAE 267 BLO7_ECOLI 266 BLOB_PSEAE 266 BLP2_PSEAE 266 Pratt run started at Thu Feb 6 18:59:43 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 29.1904 8( 8) W-x(4)-L-x-I-S-x(3)-Q-x(2)-F-L 2: 25.0203 8( 8) L-x-I-S-x(3)-Q-x(2)-F-L 3: 16.6802 8( 8) S-x(3)-Q-x(2)-F-L 4: 16.6802 8( 8) I-x(4)-Q-x(2)-F-L 5: 16.1802 9( 8) I-S-x(3)-Q-x(1,2)-F 6: 12.5102 8( 8) Q-x(2)-F-L 7: 12.5102 9( 8) L-x(3)-L-x-I 8: 12.5102 8( 8) Y-x(5)-Y-G 9: 12.5102 9( 8) S-x-F-K 10: 12.5102 9( 8) I-x(4)-Q-x(3)-L 11: 12.0102 9( 8) T-x(2,3)-A-x(3)-T 12: 12.0102 11( 8) E-x(4)-L-x(0,1)-R 13: 12.0102 13( 8) E-x(4,5)-L-R 14: 12.0102 9( 8) I-x(2,3)-E-x(3)-F 15: 12.0102 8( 8) A-x(3,4)-S-x-V 16: 12.0102 9( 8) L-x-S-x(4,5)-S 17: 12.0102 11( 8) L-x(1,2)-S-x(4)-S 18: 12.0102 11( 8) S-x(3)-Q-x(0,1)-I 19: 12.0102 8( 8) I-x(3)-E-x(1,2)-I 20: 12.0102 8( 8) P-x(2,3)-T-x-K Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 60.1996 8( 8) W-[IL]-x-[DGS]-[QS]-L-x-I-S-[AP]-x-[EN]-Q-[IV]-x-F-L-x(2)-[FILV]-x(4)-L-[PS]-x(3)-[AES] B 2: 51.8529 8( 8) S-[ST]-F-K-[ILV]-[ALP]-x-[AST]-[IL]-[FIM]-[AG]-[FL]-[DE]-[AEST]-[EG]-[AIV]-[ILV]-x-[DGNQS] C 3: 50.1476 8( 8) Y-[ILV]-x(3)-[DENS]-Y-G-x(4)-[GPS]-x-[DGNS]-x-[DEGT]-[DEKR]-x(2)-[GIL]-x-[DGT]-[EQS]-x(2)-[IL]-x-[AS]-x(3)-[IV]-x(3)-[ER]-x-[ILV] D 4: 46.8800 8( 8) L-x-I-S-[AP]-x-[EN]-Q-[IV]-x-F-L-x(2)-[FILV]-x(4)-L-[PS]-x(3)-[AES] E 5: 42.7099 8( 8) I-S-[AP]-x-[EN]-Q-[IV]-x-F-L-x(2)-[FILV]-x(4)-L-[PS]-x(3)-[AES] F 6: 38.9851 8( 8) I-S-[AP]-x-[EN]-Q-x(1,2)-F-L-x(2)-[FILV]-x(4)-L-[PS]-x(3)-[AES] G 7: 38.5399 8( 8) S-[AP]-x-[EN]-Q-[IV]-x-F-L-x(2)-[FILV]-x(4)-L-[PS]-x(3)-[AES] H 8: 38.0203 8( 8) P-x(2,3)-T-[FY]-K-x-[ALPV]-x-[APST]-[AIL]-[FILM]-x(2)-[DES]-[ADET]-[EGS]-[AIV]-[IV] I 9: 30.1139 8( 8) L-x(2)-[DGQS]-L-x-I-[ASV]-x(2)-[AEGN]-[QR]-x(2)-[FI]-L J 10: 27.9713 8( 8) Q-[IV]-x-F-L-x(2)-[FILV]-x(4)-L-[PS]-x(3)-[AES] K 11: 24.8490 8( 8) A-x(3,4)-S-[ACST]-V-x-[CSV]-x(4)-[AGT]-x-[EKR]-x-[CGT] L 12: 16.8933 8( 8) L-x(1,2)-S-x(4)-S-[CGPT]-x(4)-[EQS] M 13: 15.1876 10( 8) S-x(2)-[EN]-Q-x(0,1)-I N 14: 12.5102 9( 8) I-x(4)-Q-x(3)-L O 15: 12.0102 9( 8) T-x(2,3)-A-x(3)-T P 16: 12.0102 11( 8) E-x(4)-L-x(0,1)-R Q 17: 12.0102 13( 8) E-x(4,5)-L-R R 18: 12.0102 9( 8) I-x(2,3)-E-x(3)-F S 19: 12.0102 9( 8) L-x-S-x(4,5)-S T 20: 12.0102 11( 8) S-x(3)-Q-x(0,1)-I Best patterns with alignements: fitness hits(seqs) Pattern A 1: 60.1996 8( 8) W-[IL]-x-[DGS]-[QS]-L-x-I-S-[AP]-x-[EN]-Q-[IV]-x-F-L-x(2)-[FILV]-x(4)-L-[PS]-x(3)-[AES] Occurences: 8(8) BLAD_KLEPN : 159- 188: gltqs WLmSSLtISPkEQIqFLlrFvahkLPvseA aydma BLL1_PSEAE : 150- 179: ngtef WLdGSLtISAeEQVaFLrqVverkLPfkaS sydsl BLO1_ECOLI : 163- 192: gltea WLeSSLkISPeEQIqFLrkIinhnLPvknS aient BLO2_SALTY : 159- 188: sngdy WIeGSLaISAqEQIaFLrkLyrneLPfrvE hqrlv BLO5_PSEAE : 154- 183: gidkf WLeGQLrISAfNQVkFLesLylnnLPaskA nqliv BLO7_ECOLI : 155- 184: gidkf WLeGQLrISAvNQVeFLesLflnkLSaskE nqliv BLOB_PSEAE : 154- 183: gidkf WLeDQLrISAvNQVeFLesLylnkLSaskE nqliv BLP2_PSEAE : 154- 183: gidkf WLeGQLrISAvNQVeFLesLylnkLSaskE nqliv B 2: 51.8529 8( 8) S-[ST]-F-K-[ILV]-[ALP]-x-[AST]-[IL]-[FIM]-[AG]-[FL]-[DE]-[AEST]-[EG]-[AIV]-[ILV]-x-[DGNQS] Occurences: 8(8) BLAD_KLEPN : 63- 81: rvspc SSFKLPlAIMGFDSGILqS pkspt BLL1_PSEAE : 63- 81: rypaa STFKVLnTLIALEEGAIsG enqif BLO1_ECOLI : 71- 89: qmapd STFKIAlSLMAFDAEIIdQ ktifk BLO2_SALTY : 72- 90: ryspa STFKIPhTLFALDAGAVrD efqif BLO5_PSEAE : 67- 85: ayipa STFKIPnALIGLETGAIkD erqvf BLO7_ECOLI : 68- 86: eylpa STFKIPnAIIGLETGVIkN ehqif BLOB_PSEAE : 67- 85: eylpa STFKIPnAIIGLETGVIkN ehqvf BLP2_PSEAE : 67- 85: eylpa STFKIPnAIIGLETGVIkN ehqvf C 3: 50.1476 8( 8) Y-[ILV]-x(3)-[DENS]-Y-G-x(4)-[GPS]-x-[DGNS]-x-[DEGT]-[DEKR]-x(2)-[GIL]-x-[DGT]-[EQS]-x(2)-[IL]-x-[AS]-x(3)-[IV]-x(3)-[ER]-x-[ILV] Occurences: 8(8) BLAD_KLEPN : 134- 172: drfte YVkkfEYGnqdvSgDsGKhnGlTQswLmSsltIspkEqI qfllr BLL1_PSEAE : 131- 169: lkypa YIqqtNYGhllePfNgTEfwLdGSltIsAeeqVaflRqV verkl BLO1_ECOLI : 138- 176: nkikn YLkdfDYGnqdfSgDkERnnGlTEawLeSslkIspeEqI qflrk BLO2_SALTY : 140- 178: dkarr YLkkiDYGnadpStSnGDywIeGSlaIsAqeqIaflRkL yrnel BLO5_PSEAE : 135- 173: irmqk YLnlfSYGnaniGgGiDKfwLeGQlrIsAfnqVkflEsL ylnnl BLO7_ECOLI : 136- 174: vrmqk YLkkfSYGnqniSgGiDKfwLeGQlrIsAvnqVeflEsL flnkl BLOB_PSEAE : 135- 173: vrmqk YLkkfSYGsqniSgGiDKfwLeDQlrIsAvnqVeflEsL ylnkl BLP2_PSEAE : 135- 173: vrmqk YLkkfSYGnqniSgGiDKfwLeGQlrIsAvnqVeflEsL ylnkl D 4: 46.8800 8( 8) L-x-I-S-[AP]-x-[EN]-Q-[IV]-x-F-L-x(2)-[FILV]-x(4)-L-[PS]-x(3)-[AES] Occurences: 8(8) BLAD_KLEPN : 164- 188: wlmss LtISPkEQIqFLlrFvahkLPvseA aydma BLL1_PSEAE : 155- 179: wldgs LtISAeEQVaFLrqVverkLPfkaS sydsl BLO1_ECOLI : 168- 192: wless LkISPeEQIqFLrkIinhnLPvknS aient BLO2_SALTY : 164- 188: wiegs LaISAqEQIaFLrkLyrneLPfrvE hqrlv BLO5_PSEAE : 159- 183: wlegq LrISAfNQVkFLesLylnnLPaskA nqliv BLO7_ECOLI : 160- 184: wlegq LrISAvNQVeFLesLflnkLSaskE nqliv BLOB_PSEAE : 159- 183: wledq LrISAvNQVeFLesLylnkLSaskE nqliv BLP2_PSEAE : 159- 183: wlegq LrISAvNQVeFLesLylnkLSaskE nqliv E 5: 42.7099 8( 8) I-S-[AP]-x-[EN]-Q-[IV]-x-F-L-x(2)-[FILV]-x(4)-L-[PS]-x(3)-[AES] Occurences: 8(8) BLAD_KLEPN : 166- 188: msslt ISPkEQIqFLlrFvahkLPvseA aydma BLL1_PSEAE : 157- 179: dgslt ISAeEQVaFLrqVverkLPfkaS sydsl BLO1_ECOLI : 170- 192: esslk ISPeEQIqFLrkIinhnLPvknS aient BLO2_SALTY : 166- 188: egsla ISAqEQIaFLrkLyrneLPfrvE hqrlv BLO5_PSEAE : 161- 183: egqlr ISAfNQVkFLesLylnnLPaskA nqliv BLO7_ECOLI : 162- 184: egqlr ISAvNQVeFLesLflnkLSaskE nqliv BLOB_PSEAE : 161- 183: edqlr ISAvNQVeFLesLylnkLSaskE nqliv BLP2_PSEAE : 161- 183: egqlr ISAvNQVeFLesLylnkLSaskE nqliv F 6: 38.9851 8( 8) I-S-[AP]-x-[EN]-Q-x(1,2)-F-L-x(2)-[FILV]-x(4)-L-[PS]-x(3)-[AES] Occurences: 8(8) BLAD_KLEPN : 166- 188: msslt ISPkEQiqFLlrFvahkLPvseA aydma BLL1_PSEAE : 157- 179: dgslt ISAeEQvaFLrqVverkLPfkaS sydsl BLO1_ECOLI : 170- 192: esslk ISPeEQiqFLrkIinhnLPvknS aient BLO2_SALTY : 166- 188: egsla ISAqEQiaFLrkLyrneLPfrvE hqrlv BLO5_PSEAE : 161- 183: egqlr ISAfNQvkFLesLylnnLPaskA nqliv BLO7_ECOLI : 162- 184: egqlr ISAvNQveFLesLflnkLSaskE nqliv BLOB_PSEAE : 161- 183: edqlr ISAvNQveFLesLylnkLSaskE nqliv BLP2_PSEAE : 161- 183: egqlr ISAvNQveFLesLylnkLSaskE nqliv G 7: 38.5399 8( 8) S-[AP]-x-[EN]-Q-[IV]-x-F-L-x(2)-[FILV]-x(4)-L-[PS]-x(3)-[AES] Occurences: 8(8) BLAD_KLEPN : 167- 188: sslti SPkEQIqFLlrFvahkLPvseA aydma BLL1_PSEAE : 158- 179: gslti SAeEQVaFLrqVverkLPfkaS sydsl BLO1_ECOLI : 171- 192: sslki SPeEQIqFLrkIinhnLPvknS aient BLO2_SALTY : 167- 188: gslai SAqEQIaFLrkLyrneLPfrvE hqrlv BLO5_PSEAE : 162- 183: gqlri SAfNQVkFLesLylnnLPaskA nqliv BLO7_ECOLI : 163- 184: gqlri SAvNQVeFLesLflnkLSaskE nqliv BLOB_PSEAE : 162- 183: dqlri SAvNQVeFLesLylnkLSaskE nqliv BLP2_PSEAE : 162- 183: gqlri SAvNQVeFLesLylnkLSaskE nqliv H 8: 38.0203 8( 8) P-x(2,3)-T-[FY]-K-x-[ALPV]-x-[APST]-[AIL]-[FILM]-x(2)-[DES]-[ADET]-[EGS]-[AIV]-[IV] Occurences: 8(8) BLAD_KLEPN : 97- 116: eynps PrdrTYKqVyPALwqSDSVV wfsqq BLL1_PSEAE : 60- 79: aqqry PaasTFKvLnTLIalEEGAI sgenq BLO1_ECOLI : 69- 87: atqma Pds-TFKiAlSLMafDAEII dqkti BLO2_SALTY : 70- 88: kkrys Pas-TFKiPhTLFalDAGAV rdefq BLO5_PSEAE : 65- 83: stayi Pas-TFKiPnALIglETGAI kderq BLO7_ECOLI : 66- 84: skeyl Pas-TFKiPnAIIglETGVI knehq BLOB_PSEAE : 65- 83: skeyl Pas-TFKiPnAIIglETGVI knehq BLP2_PSEAE : 65- 83: skeyl Pas-TFKiPnAIIglETGVI knehq I 9: 30.1139 8( 8) L-x(2)-[DGQS]-L-x-I-[ASV]-x(2)-[AEGN]-[QR]-x(2)-[FI]-L Occurences: 8(8) BLAD_KLEPN : 160- 175: ltqsw LmsSLtISpkEQiqFL lrfva BLL1_PSEAE : 151- 166: gtefw LdgSLtISaeEQvaFL rqvve BLO1_ECOLI : 164- 179: lteaw LesSLkISpeEQiqFL rkiin BLO2_SALTY : 192- 207: vehqr LvkDLmIVeaGRnwIL raktg BLO5_PSEAE : 155- 170: idkfw LegQLrISafNQvkFL eslyl BLO7_ECOLI : 156- 171: idkfw LegQLrISavNQveFL eslfl BLOB_PSEAE : 155- 170: idkfw LedQLrISavNQveFL eslyl BLP2_PSEAE : 155- 170: idkfw LegQLrISavNQveFL eslyl J 10: 27.9713 8( 8) Q-[IV]-x-F-L-x(2)-[FILV]-x(4)-L-[PS]-x(3)-[AES] Occurences: 8(8) BLAD_KLEPN : 171- 188: ispke QIqFLlrFvahkLPvseA aydma BLL1_PSEAE : 162- 179: isaee QVaFLrqVverkLPfkaS sydsl BLO1_ECOLI : 175- 192: ispee QIqFLrkIinhnLPvknS aient BLO2_SALTY : 171- 188: isaqe QIaFLrkLyrneLPfrvE hqrlv BLO5_PSEAE : 166- 183: isafn QVkFLesLylnnLPaskA nqliv BLO7_ECOLI : 167- 184: isavn QVeFLesLflnkLSaskE nqliv BLOB_PSEAE : 166- 183: isavn QVeFLesLylnkLSaskE nqliv BLP2_PSEAE : 166- 183: isavn QVeFLesLylnkLSaskE nqliv K 11: 24.8490 8( 8) A-x(3,4)-S-[ACST]-V-x-[CSV]-x(4)-[AGT]-x-[EKR]-x-[CGT] Occurences: 8(8) BLAD_KLEPN : 20- 38: lvfvs AtlpiSSVaSdeveTlKcT iiada BLL1_PSEAE : 107- 124: qtlds Afkv-SCVwCyqqiAlRvG alkyp BLO1_ECOLI : 25- 43: yssas AstdiSTVaSplfeGtEgC fllyd BLO2_SALTY : 116- 133: qdlrs Amrn-STVwVyelfAkEiG ddkar BLO5_PSEAE : 111- 128: lklrg Aiqv-SAVpVfqqiArEvG eirmq BLO7_ECOLI : 112- 129: lslrg Aiqv-SAVpVfqqiArEvG evrmq BLOB_PSEAE : 111- 128: ltlrg Aiqv-SAVpVfqqiArEvG evrmq BLP2_PSEAE : 111- 128: ltlrg Aiqv-SAVpVfqqiArEvG evrmq L 12: 16.8933 8( 8) L-x(1,2)-S-x(4)-S-[CGPT]-x(4)-[EQS] Occurences: 8(8) BLAD_KLEPN : 160- 173: ltqsw Lm-SsltiSPkeqiQ fllrf BLL1_PSEAE : 104- 117: nqdqt Ld-SafkvSCvwcyQ qialr BLO1_ECOLI : 164- 177: lteaw Le-SslkiSPeeqiQ flrki BLO2_SALTY : 113- 126: nqdqd Lr-SamrnSTvwvyE lfake BLO5_PSEAE : 247- 260: dnesk Lp-SrksiSTkimaS egiii BLO7_ECOLI : 201- 215: eapey LvhSktgfSGvgteS npgva BLOB_PSEAE : 201- 215: aapey LvhSktgfSGvgteS npgva BLP2_PSEAE : 201- 215: aapey LvhSktgfSGvgteS npgva M 13: 15.1876 10( 8) S-x(2)-[EN]-Q-x(0,1)-I Occurences: 10(8) BLAD_KLEPN : 167- 172: sslti SpkEQ-I qfllr BLL1_PSEAE : 80- 85: eegai SgeNQ-I fhwng BLO1_ECOLI : 171- 176: sslki SpeEQ-I qflrk BLO2_SALTY : 167- 172: gslai SaqEQ-I aflrk BLO5_PSEAE : 181- 187: nnlpa SkaNQlI vkeai BLO7_ECOLI : 141- 147: ylkkf SygNQnI sggid BLO7_ECOLI : 182- 188: nklsa SkeNQlI vkeal BLOB_PSEAE : 181- 187: nklsa SkeNQlI vkeal BLP2_PSEAE : 140- 146: ylkkf SygNQnI sggid BLP2_PSEAE : 181- 187: nklsa SkeNQlI vkeal N 14: 12.5102 9( 8) I-x(4)-Q-x(3)-L Occurences: 9(8) BLAD_KLEPN : 166- 175: msslt IspkeQiqfL lrfva BLL1_PSEAE : 95- 104: gtqys IanwnQdqtL dsafk BLL1_PSEAE : 157- 166: dgslt IsaeeQvafL rqvve BLO1_ECOLI : 170- 179: esslk IspeeQiqfL rkiin BLO2_SALTY : 166- 175: egsla IsaqeQiafL rklyr BLO5_PSEAE : 161- 170: egqlr IsafnQvkfL eslyl BLO7_ECOLI : 162- 171: egqlr IsavnQvefL eslfl BLOB_PSEAE : 161- 170: edqlr IsavnQvefL eslyl BLP2_PSEAE : 161- 170: egqlr IsavnQvefL eslyl O 15: 12.0102 9( 8) T-x(2,3)-A-x(3)-T Occurences: 9(8) BLAD_KLEPN : 38- 45: etlkc Tii-AdaiT gntly BLL1_PSEAE : 202- 209: rlyak Tgw-AtrmT psvgw BLO1_ECOLI : 65- 72: kakca Tqm-ApdsT fkial BLO2_SALTY : 17- 25: ifsla TfahAqegT lersd BLO5_PSEAE : 53- 61: snsct TnnaArasT ayipa BLO7_ECOLI : 3- 10: mk Tfa-AyviT aclss BLO7_ECOLI : 16- 23: aclss Tal-AssiT entfw BLOB_PSEAE : 16- 23: aclss Tal-AgsiT entsw BLP2_PSEAE : 16- 23: aclss Tal-AgsiT entsw P 16: 12.0102 11( 8) E-x(4)-L-x(0,1)-R Occurences: 11(8) BLAD_KLEPN : 170- 177: tispk EqiqfLlR fvahk BLL1_PSEAE : 161- 167: tisae EqvafL-R qvver BLO1_ECOLI : 174- 180: kispe EqiqfL-R kiinh BLO2_SALTY : 170- 176: aisaq EqiafL-R klyrn BLO5_PSEAE : 103- 109: amkqw EkdlkL-R gaiqv BLO7_ECOLI : 104- 110: amkqw ErdlsL-R gaiqv BLO7_ECOLI : 244- 250: mdidn EnklpL-R ksipt BLOB_PSEAE : 103- 109: amkqw ErdltL-R gaiqv BLOB_PSEAE : 244- 250: mdidn EsklpL-R ksipt BLP2_PSEAE : 103- 109: amkqw ErdltL-R gaiqv BLP2_PSEAE : 244- 250: mdidn EsklpL-R ksipt Q 17: 12.0102 13( 8) E-x(4,5)-L-R Occurences: 13(8) BLAD_KLEPN : 170- 177: tispk EqiqflLR fvahk BLL1_PSEAE : 160- 167: ltisa EeqvafLR qvver BLL1_PSEAE : 161- 167: tisae Eqvaf-LR qvver BLO1_ECOLI : 173- 180: lkisp EeqiqfLR kiinh BLO1_ECOLI : 174- 180: kispe Eqiqf-LR kiinh BLO2_SALTY : 170- 176: aisaq Eqiaf-LR klyrn BLO5_PSEAE : 103- 109: amkqw Ekdlk-LR gaiqv BLO7_ECOLI : 104- 110: amkqw Erdls-LR gaiqv BLO7_ECOLI : 244- 250: mdidn Enklp-LR ksipt BLOB_PSEAE : 103- 109: amkqw Erdlt-LR gaiqv BLOB_PSEAE : 244- 250: mdidn Esklp-LR ksipt BLP2_PSEAE : 103- 109: amkqw Erdlt-LR gaiqv BLP2_PSEAE : 244- 250: mdidn Esklp-LR ksipt R 18: 12.0102 9( 8) I-x(2,3)-E-x(3)-F Occurences: 9(8) BLAD_KLEPN : 166- 174: msslt IspkEqiqF llrfv BLL1_PSEAE : 79- 86: leega Isg-EnqiF hwngt BLL1_PSEAE : 157- 165: dgslt IsaeEqvaF lrqvv BLO1_ECOLI : 170- 178: esslk IspeEqiqF lrkii BLO2_SALTY : 166- 174: egsla IsaqEqiaF lrkly BLO5_PSEAE : 83- 90: letga Ikd-ErqvF kwdgk BLO7_ECOLI : 84- 91: letgv Ikn-EhqiF kwdgk BLOB_PSEAE : 83- 90: letgv Ikn-EhqvF kwdgk BLP2_PSEAE : 83- 90: letgv Ikn-EhqvF kwdgk S 19: 12.0102 9( 8) L-x-S-x(4,5)-S Occurences: 9(8) BLAD_KLEPN : 160- 167: ltqsw LmSslti-S pkeqi BLL1_PSEAE : 104- 111: nqdqt LdSafkv-S cvwcy BLO1_ECOLI : 164- 171: lteaw LeSslki-S peeqi BLO1_ECOLI : 253- 260: altgn LgSnlts-S ikakk BLO2_SALTY : 113- 120: nqdqd LrSamrn-S tvwvy BLO5_PSEAE : 247- 254: dnesk LpSrksi-S tkima BLO7_ECOLI : 13- 20: vitac LsStala-S siten BLO7_ECOLI : 13- 21: vitac LsStalasS itent BLOB_PSEAE : 13- 21: viiac LsStalagS itent BLP2_PSEAE : 13- 21: viiac LsStalagS itent T 20: 12.0102 11( 8) S-x(3)-Q-x(0,1)-I Occurences: 11(8) BLAD_KLEPN : 167- 172: sslti SpkeQ-I qfllr BLL1_PSEAE : 80- 85: eegai SgenQ-I fhwng BLO1_ECOLI : 171- 176: sslki SpeeQ-I qflrk BLO2_SALTY : 167- 172: gslai SaqeQ-I aflrk BLO5_PSEAE : 181- 187: nnlpa SkanQlI vkeai BLO7_ECOLI : 141- 147: ylkkf SygnQnI sggid BLO7_ECOLI : 182- 188: nklsa SkenQlI vkeal BLOB_PSEAE : 140- 146: ylkkf SygsQnI sggid BLOB_PSEAE : 181- 187: nklsa SkenQlI vkeal BLP2_PSEAE : 140- 146: ylkkf SygnQnI sggid BLP2_PSEAE : 181- 187: nklsa SkenQlI vkeal Number of patterns evaluated by Pratt:3594 Total running time: 2 seconds