------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file BETA_LACTAMASE_C PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename BETA_LACTAMASE_C.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AMPC_CITFR 381 AMPC_ECOLI 377 AMPC_ENTCL 381 AMPC_PSEAE 397 AMPC_SERMA 376 AMPC_YEREN 388 PENA_BURCE 313 Pratt run started at Thu Feb 6 18:59:39 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 33.3604 7( 7) T-x(2)-T-L-F-E-x-G-S-x(2)-K 2: 29.1904 7( 7) T-L-F-E-x-G-S-x(2)-K 3: 25.0203 7( 7) L-F-E-x-G-S-x(2)-K 4: 24.0203 7( 7) L-x(1,2)-A-x(2)-T-x-G-x(2,3)-L-x(2)-P 5: 24.0203 7( 7) L-x(0,1)-A-x(2)-T-x-G-x(2,3)-L-x(2)-P 6: 20.8503 7( 7) F-E-x-G-S-x(2)-K 7: 20.3503 7( 7) A-x(2)-T-x-G-x(2,3)-L-x(2)-P 8: 19.3503 7( 7) A-x(2)-T-x-G-x(0,2)-P-x(2,3)-P 9: 19.3503 7( 7) L-x-T-x(1,3)-G-x(2,3)-L-x(2)-P 10: 19.3503 7( 7) L-x(1,3)-T-x-G-x(2,3)-L-x(2)-P 11: 19.3503 7( 7) L-x(1,3)-T-x(1,2)-G-x(2)-L-x(2)-P 12: 19.3503 7( 7) T-x(0,2)-G-x(0,1)-T-x-G-F 13: 19.3503 7( 7) L-x(0,1)-F-E-x(2)-S-x(1,3)-S 14: 18.8503 7( 7) A-x(2,4)-G-x(0,2)-P-x(3)-P-x(2)-V 15: 18.8503 7( 7) L-x-L-x(4)-A-x(3,5)-Q-x(2,4)-V 16: 16.6802 7( 7) E-x-G-S-x(2)-K 17: 16.1802 7( 7) L-x(5)-G-x(0,1)-L-x-L 18: 16.1802 7( 7) G-x(2)-L-x(1,2)-P-x(2)-V 19: 16.1802 7( 7) T-x(1,2)-G-x(2)-L-x(2)-P 20: 16.1802 7( 7) G-x(0,1)-T-x-G-F Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 78.3447 7( 7) T-[EPQ]-[ENQ]-T-L-F-E-[ILV]-G-S-[GILV]-[AS]-K-[ET]-x-[NT]-[AG]-x(2)-[AGV]-x(4)-[AQT]-x-[DGS]-x(3)-[FL]-x(4)-[PST]-x(3)-[LP]-x-[GLV]-x-[AGV] B 2: 68.9843 7( 7) T-L-F-E-[ILV]-G-S-[GILV]-[AS]-K-[ET]-x-[NT]-[AG]-x(2)-[AGV]-x(4)-[AQT]-x-[DGS]-x(3)-[FL]-x(4)-[PST]-x(3)-[LP]-x-[GLV]-x-[AGV] C 3: 64.8142 7( 7) L-F-E-[ILV]-G-S-[GILV]-[AS]-K-[ET]-x-[NT]-[AG]-x(2)-[AGV]-x(4)-[AQT]-x-[DGS]-x(3)-[FL]-x(4)-[PST]-x(3)-[LP]-x-[GLV]-x-[AGV] D 4: 60.6442 7( 7) F-E-[ILV]-G-S-[GILV]-[AS]-K-[ET]-x-[NT]-[AG]-x(2)-[AGV]-x(4)-[AQT]-x-[DGS]-x(3)-[FL]-x(4)-[PST]-x(3)-[LP]-x-[GLV]-x-[AGV] E 5: 56.4741 7( 7) E-[ILV]-G-S-[GILV]-[AS]-K-[ET]-x-[NT]-[AG]-x(2)-[AGV]-x(4)-[AQT]-x-[DGS]-x(3)-[FL]-x(4)-[PST]-x(3)-[LP]-x-[GLV]-x-[AGV] F 6: 41.0540 7( 7) L-x(0,1)-F-E-[ILPV]-[GP]-S-x(1,3)-S-x-[AT]-x-[NQT]-[AGT]-[STV]-[ALV]-[ADG] G 7: 37.2117 7( 7) L-x(1,2)-A-x(2)-T-[APS]-G-x(2,3)-L-x-[FILV]-P-[ADG]-[DERS]-[MV] H 8: 37.2117 7( 7) L-x(0,1)-A-x(2)-T-[APS]-G-x(2,3)-L-x-[FILV]-P-[ADG]-[DERS]-[MV] I 9: 36.3644 7( 7) L-x(1,3)-T-x(1,2)-G-[FL]-[PT]-L-x-[FILV]-P-[ADG]-[DERS]-[MV] J 10: 33.5417 7( 7) A-x(2)-T-[APS]-G-x(2,3)-L-x-[FILV]-P-[ADG]-[DERS]-[MV] K 11: 33.1944 7( 7) T-x(1,2)-G-[FL]-[PT]-L-x-[FILV]-P-[ADG]-[DERS]-[MV] L 12: 33.0927 7( 7) L-[AG]-T-x(1,3)-G-x(2,3)-L-x-[FILV]-P-[ADG]-[DERS]-[MV] M 13: 32.5417 7( 7) L-x(1,3)-T-[APS]-G-x(2,3)-L-x-[FILV]-P-[ADG]-[DERS]-[MV] N 14: 31.2001 7( 7) L-[AL]-[ST]-x(3)-G-x(0,1)-L-[CP]-L-x-[FILV]-[LP] O 15: 29.4840 7( 7) T-x(0,2)-G-x(0,1)-T-[GNP]-G-F-[GST]-x(2)-[AILV]-[APV] P 16: 26.3139 7( 7) G-x(0,1)-T-[GNP]-G-F-[GST]-x(2)-[AILV]-[APV] Q 17: 24.6712 7( 7) L-x-L-[APS]-[QT]-x(2)-A-x(3,5)-Q-x(2,4)-V R 18: 24.2928 7( 7) G-[LP]-x-L-x(1,2)-P-[DG]-x-V-x(4)-[ADEGQS] S 19: 23.7454 7( 7) A-x(2,4)-G-x(0,2)-P-x(3)-P-[DG]-x-V-x(4)-[ADEGQS] T 20: 22.4693 7( 7) L-x(1,2)-A-x(2)-T-[APS]-G-x(2,3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 78.3447 7( 7) T-[EPQ]-[ENQ]-T-L-F-E-[ILV]-G-S-[GILV]-[AS]-K-[ET]-x-[NT]-[AG]-x(2)-[AGV]-x(4)-[AQT]-x-[DGS]-x(3)-[FL]-x(4)-[PST]-x(3)-[LP]-x-[GLV]-x-[AGV] Occurences: 7(7) AMPC_CITFR : 75- 118: nnhpv TQQTLFELGSVSKTfNGvlGgdriArGeikLsdpvTkywPeLtG kqwrg AMPC_ECOLI : 71- 114: kkqpv TQQTLFELGSVSKTfTGvlGgdaiArGeikLsdptTkywPeLtA kqwng AMPC_ENTCL : 75- 118: ankpv TPQTLFELGSISKTfTGvlGgdaiArGeisLddavTrywPqLtG kqwqg AMPC_PSEAE : 81- 124: dgrrv TPETLFEIGSVSKTfTAtlAgyalTqDkmrLddraSqhwPaLqG srfdg AMPC_SERMA : 70- 113: tgkpi TEQTLFEVGSLSKTfTAtlAvyaqQqSklsFkdpaShylPdVrG safdg AMPC_YEREN : 80- 123: agrpv TENTLFELGSVSKTfTGvaGeyamQtGimnLndpvTeyaPeLtG sqwkd PENA_BURCE : 181- 224: nnhpa TQQTLFELGSGAKErNAinVsyltAlGtpgFtlmlParmLcGiV sdnnf B 2: 68.9843 7( 7) T-L-F-E-[ILV]-G-S-[GILV]-[AS]-K-[ET]-x-[NT]-[AG]-x(2)-[AGV]-x(4)-[AQT]-x-[DGS]-x(3)-[FL]-x(4)-[PST]-x(3)-[LP]-x-[GLV]-x-[AGV] Occurences: 7(7) AMPC_CITFR : 78- 118: pvtqq TLFELGSVSKTfNGvlGgdriArGeikLsdpvTkywPeLtG kqwrg AMPC_ECOLI : 74- 114: pvtqq TLFELGSVSKTfTGvlGgdaiArGeikLsdptTkywPeLtA kqwng AMPC_ENTCL : 78- 118: pvtpq TLFELGSISKTfTGvlGgdaiArGeisLddavTrywPqLtG kqwqg AMPC_PSEAE : 84- 124: rvtpe TLFEIGSVSKTfTAtlAgyalTqDkmrLddraSqhwPaLqG srfdg AMPC_SERMA : 73- 113: piteq TLFEVGSLSKTfTAtlAvyaqQqSklsFkdpaShylPdVrG safdg AMPC_YEREN : 83- 123: pvten TLFELGSVSKTfTGvaGeyamQtGimnLndpvTeyaPeLtG sqwkd PENA_BURCE : 184- 224: patqq TLFELGSGAKErNAinVsyltAlGtpgFtlmlParmLcGiV sdnnf C 3: 64.8142 7( 7) L-F-E-[ILV]-G-S-[GILV]-[AS]-K-[ET]-x-[NT]-[AG]-x(2)-[AGV]-x(4)-[AQT]-x-[DGS]-x(3)-[FL]-x(4)-[PST]-x(3)-[LP]-x-[GLV]-x-[AGV] Occurences: 7(7) AMPC_CITFR : 79- 118: vtqqt LFELGSVSKTfNGvlGgdriArGeikLsdpvTkywPeLtG kqwrg AMPC_ECOLI : 75- 114: vtqqt LFELGSVSKTfTGvlGgdaiArGeikLsdptTkywPeLtA kqwng AMPC_ENTCL : 79- 118: vtpqt LFELGSISKTfTGvlGgdaiArGeisLddavTrywPqLtG kqwqg AMPC_PSEAE : 85- 124: vtpet LFEIGSVSKTfTAtlAgyalTqDkmrLddraSqhwPaLqG srfdg AMPC_SERMA : 74- 113: iteqt LFEVGSLSKTfTAtlAvyaqQqSklsFkdpaShylPdVrG safdg AMPC_YEREN : 84- 123: vtent LFELGSVSKTfTGvaGeyamQtGimnLndpvTeyaPeLtG sqwkd PENA_BURCE : 185- 224: atqqt LFELGSGAKErNAinVsyltAlGtpgFtlmlParmLcGiV sdnnf D 4: 60.6442 7( 7) F-E-[ILV]-G-S-[GILV]-[AS]-K-[ET]-x-[NT]-[AG]-x(2)-[AGV]-x(4)-[AQT]-x-[DGS]-x(3)-[FL]-x(4)-[PST]-x(3)-[LP]-x-[GLV]-x-[AGV] Occurences: 7(7) AMPC_CITFR : 80- 118: tqqtl FELGSVSKTfNGvlGgdriArGeikLsdpvTkywPeLtG kqwrg AMPC_ECOLI : 76- 114: tqqtl FELGSVSKTfTGvlGgdaiArGeikLsdptTkywPeLtA kqwng AMPC_ENTCL : 80- 118: tpqtl FELGSISKTfTGvlGgdaiArGeisLddavTrywPqLtG kqwqg AMPC_PSEAE : 86- 124: tpetl FEIGSVSKTfTAtlAgyalTqDkmrLddraSqhwPaLqG srfdg AMPC_SERMA : 75- 113: teqtl FEVGSLSKTfTAtlAvyaqQqSklsFkdpaShylPdVrG safdg AMPC_YEREN : 85- 123: tentl FELGSVSKTfTGvaGeyamQtGimnLndpvTeyaPeLtG sqwkd PENA_BURCE : 186- 224: tqqtl FELGSGAKErNAinVsyltAlGtpgFtlmlParmLcGiV sdnnf E 5: 56.4741 7( 7) E-[ILV]-G-S-[GILV]-[AS]-K-[ET]-x-[NT]-[AG]-x(2)-[AGV]-x(4)-[AQT]-x-[DGS]-x(3)-[FL]-x(4)-[PST]-x(3)-[LP]-x-[GLV]-x-[AGV] Occurences: 7(7) AMPC_CITFR : 81- 118: qqtlf ELGSVSKTfNGvlGgdriArGeikLsdpvTkywPeLtG kqwrg AMPC_ECOLI : 77- 114: qqtlf ELGSVSKTfTGvlGgdaiArGeikLsdptTkywPeLtA kqwng AMPC_ENTCL : 81- 118: pqtlf ELGSISKTfTGvlGgdaiArGeisLddavTrywPqLtG kqwqg AMPC_PSEAE : 87- 124: petlf EIGSVSKTfTAtlAgyalTqDkmrLddraSqhwPaLqG srfdg AMPC_SERMA : 76- 113: eqtlf EVGSLSKTfTAtlAvyaqQqSklsFkdpaShylPdVrG safdg AMPC_YEREN : 86- 123: entlf ELGSVSKTfTGvaGeyamQtGimnLndpvTeyaPeLtG sqwkd PENA_BURCE : 187- 224: qqtlf ELGSGAKErNAinVsyltAlGtpgFtlmlParmLcGiV sdnnf F 6: 41.0540 7( 7) L-x(0,1)-F-E-[ILPV]-[GP]-S-x(1,3)-S-x-[AT]-x-[NQT]-[AGT]-[STV]-[ALV]-[ADG] Occurences: 7(7) AMPC_CITFR : 79- 94: vtqqt L-FELGSv--SkTfNGVLG gdria AMPC_ECOLI : 75- 90: vtqqt L-FELGSv--SkTfTGVLG gdaia AMPC_ENTCL : 79- 94: vtpqt L-FELGSi--SkTfTGVLG gdaia AMPC_PSEAE : 85- 100: vtpet L-FEIGSv--SkTfTATLA gyalt AMPC_SERMA : 74- 89: iteqt L-FEVGSl--SkTfTATLA vyaqq AMPC_YEREN : 84- 99: vtent L-FELGSv--SkTfTGVAG eyamq PENA_BURCE : 116- 134: fdykd LrFEPPSnriSpAgQTSVD rllql G 7: 37.2117 7( 7) L-x(1,2)-A-x(2)-T-[APS]-G-x(2,3)-L-x-[FILV]-P-[ADG]-[DERS]-[MV] Occurences: 7(7) AMPC_CITFR : 127- 145: rgisl LhlAtyTAGglpLqIPGDV tdkae AMPC_ECOLI : 123- 141: ngitl LhlAtyTAGglpLqVPDEV ksssd AMPC_ENTCL : 127- 145: qgirm LdlAtyTAGglpLqVPDEV tdnas AMPC_PSEAE : 133- 151: dgisl LdlAtyTAGglpLqFPDSV qkdqa AMPC_SERMA : 122- 139: dgvsl LnlAthTSGlp-LfVPDDV tnnaq AMPC_YEREN : 132- 150: kdvkm LhlAtyTAGglpLqLPDSV tdqks PENA_BURCE : 203- 219: invsy Lt-AlgTPGft-LmLPARM lcgiv H 8: 37.2117 7( 7) L-x(0,1)-A-x(2)-T-[APS]-G-x(2,3)-L-x-[FILV]-P-[ADG]-[DERS]-[MV] Occurences: 7(7) AMPC_CITFR : 129- 145: isllh L-AtyTAGglpLqIPGDV tdkae AMPC_ECOLI : 125- 141: itllh L-AtyTAGglpLqVPDEV ksssd AMPC_ENTCL : 129- 145: irmld L-AtyTAGglpLqVPDEV tdnas AMPC_PSEAE : 135- 151: islld L-AtyTAGglpLqFPDSV qkdqa AMPC_SERMA : 124- 139: vslln L-AthTSGlp-LfVPDDV tnnaq AMPC_YEREN : 134- 150: vkmlh L-AtyTAGglpLqLPDSV tdqks PENA_BURCE : 203- 219: invsy LtAlgTPGft-LmLPARM lcgiv I 9: 36.3644 7( 7) L-x(1,3)-T-x(1,2)-G-[FL]-[PT]-L-x-[FILV]-P-[ADG]-[DERS]-[MV] Occurences: 7(7) AMPC_CITFR : 129- 145: isllh LatyTagGLPLqIPGDV tdkae AMPC_ECOLI : 125- 141: itllh LatyTagGLPLqVPDEV ksssd AMPC_ENTCL : 129- 145: irmld LatyTagGLPLqVPDEV tdnas AMPC_PSEAE : 135- 151: islld LatyTagGLPLqFPDSV qkdqa AMPC_SERMA : 124- 139: vslln LathTs-GLPLfVPDDV tnnaq AMPC_YEREN : 134- 150: vkmlh LatyTagGLPLqLPDSV tdqks PENA_BURCE : 206- 219: sylta Lg--Tp-GFTLmLPARM lcgiv J 10: 33.5417 7( 7) A-x(2)-T-[APS]-G-x(2,3)-L-x-[FILV]-P-[ADG]-[DERS]-[MV] Occurences: 7(7) AMPC_CITFR : 130- 145: sllhl AtyTAGglpLqIPGDV tdkae AMPC_ECOLI : 126- 141: tllhl AtyTAGglpLqVPDEV ksssd AMPC_ENTCL : 130- 145: rmldl AtyTAGglpLqVPDEV tdnas AMPC_PSEAE : 136- 151: slldl AtyTAGglpLqFPDSV qkdqa AMPC_SERMA : 125- 139: sllnl AthTSGlp-LfVPDDV tnnaq AMPC_YEREN : 135- 150: kmlhl AtyTAGglpLqLPDSV tdqks PENA_BURCE : 205- 219: vsylt AlgTPGft-LmLPARM lcgiv K 11: 33.1944 7( 7) T-x(1,2)-G-[FL]-[PT]-L-x-[FILV]-P-[ADG]-[DERS]-[MV] Occurences: 7(7) AMPC_CITFR : 133- 145: hlaty TagGLPLqIPGDV tdkae AMPC_ECOLI : 129- 141: hlaty TagGLPLqVPDEV ksssd AMPC_ENTCL : 133- 145: dlaty TagGLPLqVPDEV tdnas AMPC_PSEAE : 139- 151: dlaty TagGLPLqFPDSV qkdqa AMPC_SERMA : 128- 139: nlath Ts-GLPLfVPDDV tnnaq AMPC_YEREN : 138- 150: hlaty TagGLPLqLPDSV tdqks PENA_BURCE : 208- 219: ltalg Tp-GFTLmLPARM lcgiv L 12: 33.0927 7( 7) L-[AG]-T-x(1,3)-G-x(2,3)-L-x-[FILV]-P-[ADG]-[DERS]-[MV] Occurences: 7(7) AMPC_CITFR : 129- 145: isllh LATytaGglpLqIPGDV tdkae AMPC_ECOLI : 125- 141: itllh LATytaGglpLqVPDEV ksssd AMPC_ENTCL : 129- 145: irmld LATytaGglpLqVPDEV tdnas AMPC_PSEAE : 135- 151: islld LATytaGglpLqFPDSV qkdqa AMPC_SERMA : 124- 139: vslln LAThtsGlp-LfVPDDV tnnaq AMPC_YEREN : 134- 150: vkmlh LATytaGglpLqLPDSV tdqks PENA_BURCE : 206- 219: sylta LGTp--Gft-LmLPARM lcgiv M 13: 32.5417 7( 7) L-x(1,3)-T-[APS]-G-x(2,3)-L-x-[FILV]-P-[ADG]-[DERS]-[MV] Occurences: 7(7) AMPC_CITFR : 129- 145: isllh LatyTAGglpLqIPGDV tdkae AMPC_ECOLI : 125- 141: itllh LatyTAGglpLqVPDEV ksssd AMPC_ENTCL : 129- 145: irmld LatyTAGglpLqVPDEV tdnas AMPC_PSEAE : 135- 151: islld LatyTAGglpLqFPDSV qkdqa AMPC_SERMA : 124- 139: vslln LathTSGlp-LfVPDDV tnnaq AMPC_YEREN : 134- 150: vkmlh LatyTAGglpLqLPDSV tdqks PENA_BURCE : 206- 219: sylta Lg--TPGft-LmLPARM lcgiv N 14: 31.2001 7( 7) L-[AL]-[ST]-x(3)-G-x(0,1)-L-[CP]-L-x-[FILV]-[LP] Occurences: 7(7) AMPC_CITFR : 129- 142: isllh LATytaGgLPLqIP gdvtd AMPC_ECOLI : 125- 138: itllh LATytaGgLPLqVP devks AMPC_ENTCL : 129- 142: irmld LATytaGgLPLqVP devtd AMPC_PSEAE : 135- 148: islld LATytaGgLPLqFP dsvqk AMPC_SERMA : 124- 136: vslln LAThtsG-LPLfVP ddvtn AMPC_YEREN : 134- 147: vkmlh LATytaGgLPLqLP dsvtd PENA_BURCE : 271- 283: lrtgk LLSslrG-LCLtVL rfqpt O 15: 29.4840 7( 7) T-x(0,2)-G-x(0,1)-T-[GNP]-G-F-[GST]-x(2)-[AILV]-[APV] Occurences: 7(7) AMPC_CITFR : 336- 347: swvhk T--GsTGGFGsyVA fvpek AMPC_ECOLI : 332- 343: swvhk T--GaTGGFGsyVA fipek AMPC_ENTCL : 336- 347: swvhk T--GsTGGFGsyVA fipek AMPC_PSEAE : 343- 354: rllnk T--GsTNGFGayVA fvpgr AMPC_SERMA : 329- 340: gwynk T--GsTGGFStyAV fipak AMPC_YEREN : 343- 354: swvhk T--GaTNGFGayIV fipee PENA_BURCE : 204- 216: nvsyl TalG-TPGFTlmLP armlc P 16: 26.3139 7( 7) G-x(0,1)-T-[GNP]-G-F-[GST]-x(2)-[AILV]-[APV] Occurences: 7(7) AMPC_CITFR : 337- 347: wvhkt GsTGGFGsyVA fvpek AMPC_ECOLI : 333- 343: wvhkt GaTGGFGsyVA fipek AMPC_ENTCL : 337- 347: wvhkt GsTGGFGsyVA fipek AMPC_PSEAE : 344- 354: llnkt GsTNGFGayVA fvpgr AMPC_SERMA : 330- 340: wynkt GsTGGFStyAV fipak AMPC_YEREN : 344- 354: wvhkt GaTNGFGayIV fipee PENA_BURCE : 207- 216: yltal G-TPGFTlmLP armlc Q 17: 24.6712 7( 7) L-x-L-[APS]-[QT]-x(2)-A-x(3,5)-Q-x(2,4)-V Occurences: 7(7) AMPC_CITFR : 127- 145: rgisl LhLATytAgglplQipgdV tdkae AMPC_ECOLI : 123- 141: ngitl LhLATytAgglplQvpdeV ksssd AMPC_ENTCL : 127- 145: qgirm LdLATytAgglplQvpdeV tdnas AMPC_PSEAE : 133- 151: dgisl LdLATytAgglplQfpdsV qkdqa AMPC_SERMA : 14- 30: aliaa LiLPTahAaqq--QdidaV iqplm AMPC_YEREN : 132- 150: kdvkm LhLATytAgglplQlpdsV tdqks PENA_BURCE : 137- 151: svdrl LqLSQgqAveg--Qsa--V arltg R 18: 24.2928 7( 7) G-[LP]-x-L-x(1,2)-P-[DG]-x-V-x(4)-[ADEGQS] Occurences: 7(7) AMPC_CITFR : 136- 150: tytag GLpLqiPGdVtdkaE llrfy AMPC_ECOLI : 132- 146: tytag GLpLqvPDeVksssD llrfy AMPC_ENTCL : 136- 150: tytag GLpLqvPDeVtdnaS llrfy AMPC_PSEAE : 142- 156: tytag GLpLqfPDsVqkdqA qirdy AMPC_SERMA : 130- 144: athts GLpLfvPDdVtnnaQ lmayy AMPC_YEREN : 141- 155: tytag GLpLqlPDsVtdqkS lwqyy PENA_BURCE : 252- 265: epakr GPwLe-PGlVirkdG lrtgk S 19: 23.7454 7( 7) A-x(2,4)-G-x(0,2)-P-x(3)-P-[DG]-x-V-x(4)-[ADEGQS] Occurences: 7(7) AMPC_CITFR : 130- 150: sllhl AtytaGglPlqiPGdVtdkaE llrfy AMPC_ECOLI : 126- 146: tllhl AtytaGglPlqvPDeVksssD llrfy AMPC_ENTCL : 130- 150: rmldl AtytaGglPlqvPDeVtdnaS llrfy AMPC_PSEAE : 136- 156: slldl AtytaGglPlqfPDsVqkdqA qirdy AMPC_SERMA : 125- 144: sllnl AthtsGl-PlfvPDdVtnnaQ lmayy AMPC_YEREN : 135- 155: kmlhl AtytaGglPlqlPDsVtdqkS lwqyy PENA_BURCE : 249- 265: gpaep Akr--G--PwlePGlVirkdG lrtgk T 20: 22.4693 7( 7) L-x(1,2)-A-x(2)-T-[APS]-G-x(2,3)-L Occurences: 7(7) AMPC_CITFR : 127- 139: rgisl LhlAtyTAGglpL qipgd AMPC_ECOLI : 123- 135: ngitl LhlAtyTAGglpL qvpde AMPC_ENTCL : 127- 139: qgirm LdlAtyTAGglpL qvpde AMPC_PSEAE : 133- 145: dgisl LdlAtyTAGglpL qfpds AMPC_SERMA : 122- 133: dgvsl LnlAthTSGlp-L fvpdd AMPC_YEREN : 132- 144: kdvkm LhlAtyTAGglpL qlpds PENA_BURCE : 203- 213: invsy Lt-AlgTPGft-L mlpar Number of patterns evaluated by Pratt:8316 Total running time: 4 seconds