------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file BETA_LACTAMASE_B_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename BETA_LACTAMASE_B_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BLA2_BACCE 257 BLA2_BACSP 257 BLAB_AERHY 254 BLAB_BACCE 256 BLAB_BACFR 249 Pratt run started at Thu Feb 6 18:59:37 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 44.8706 5( 5) G-x(2)-H-x(0,1)-T-x(0,1)-D-x-I-x-V-x(2)-P-x(4)-L-x-G-x-C-x(2)-K 2: 44.8706 5( 5) Y-x(4)-H-x(0,1)-T-x(0,1)-D-x-I-x-V-x(2)-P-x(4)-L-x-G-x-C-x(2)-K 3: 40.7005 5( 5) H-x(0,1)-T-x(0,1)-D-x-I-x-V-x(2)-P-x(4)-L-x-G-x-C-x(2)-K 4: 40.7005 6( 5) G-x(2,3)-T-x(0,1)-D-x-I-x-V-x(2)-P-x(4)-L-x-G-x-C-x(2)-K 5: 40.7005 6( 5) G-x(3,4)-T-x(0,1)-D-x-I-x-V-x(2)-P-x(4)-L-x-G-x-C-x(2)-K 6: 32.3604 5( 5) I-x-V-x(2)-P-x(4)-L-x-G-x-C-x(0,1)-L-x(0,1)-K 7: 32.3604 5( 5) D-x-I-x(0,1)-V-x(2,3)-P-x(4)-L-x-G-x-C-x(2)-K 8: 28.1904 5( 5) V-x(2)-P-x(4)-L-x-G-x-C-x(0,1)-L-x(0,1)-K 9: 28.1904 5( 5) I-x(0,1)-V-x(2,3)-P-x(4)-L-x-G-x-C-x(2)-K 10: 28.1904 5( 5) T-x(4,5)-V-x(2)-P-x(4)-L-x-G-x-C-x(0,1)-L 11: 25.0203 5( 5) V-x(3)-I-x(4)-H-x-D-x(2)-G-G 12: 24.5203 5( 5) V-x(2,3)-I-x(4)-H-x-D-x(2)-G-G 13: 24.5203 5( 5) K-x(4,5)-I-x(4)-H-x-D-x(2)-G-G 14: 24.0203 5( 5) P-x(4)-L-x-G-x-C-x(0,1)-L-x(0,1)-K 15: 23.5203 5( 5) V-x(2)-G-H-x(3,5)-G-x(2,3)-L-x(2)-H 16: 20.8503 5( 5) I-x(4)-H-x-D-x(2)-G-G 17: 19.8503 5( 5) L-x-G-x-C-x(0,1)-L-x(0,1)-K 18: 19.8503 5( 5) G-x(3)-T-x(0,1)-D-x-I-x(0,1)-V 19: 19.3503 5( 5) L-x(4)-I-L-x(2,4)-G-x(1,2)-L 20: 19.3503 5( 5) V-x(0,1)-L-x(4)-I-L-x(2,4)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 115.7629 5( 5) Y-[ALP]-G-x-[AG]-H-x(0,1)-T-x(0,1)-D-[GN]-I-[FV]-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS] B 2: 111.6154 5( 5) G-x-[AG]-H-x(0,1)-T-x(0,1)-D-[GN]-I-[FV]-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] C 3: 104.2753 5( 5) H-x(0,1)-T-x(0,1)-D-[GN]-I-[FV]-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] D 4: 104.2753 6( 5) G-x(2,3)-T-x(0,1)-D-[GN]-I-[FV]-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] E 5: 104.2753 6( 5) G-x(3,4)-T-x(0,1)-D-[GN]-I-[FV]-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] F 6: 101.0637 5( 5) G-x(3)-T-x(0,1)-D-[GN]-I-x(0,1)-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] G 7: 86.5894 5( 5) I-[FV]-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-x(0,1)-L-x(0,1)-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] H 8: 86.1116 5( 5) D-[GN]-I-x(0,1)-V-x(2,3)-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] I 9: 79.2078 5( 5) V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-x(0,1)-L-x(0,1)-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] J 10: 78.6685 5( 5) I-x(0,1)-V-x(2,3)-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] K 11: 68.4258 5( 5) P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-x(0,1)-L-x(0,1)-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] L 12: 65.8593 5( 5) T-x(4,5)-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-x(0,1)-L-x-[DEK]-x(2)-[AEGS]-[ANST]-x(3)-[AGN]-x-[SV]-x-[AD]-x(3)-[ANT] M 13: 60.7783 5( 5) V-x(0,1)-L-x-[GQT]-x(2)-I-L-x(2,4)-G-[CN]-[LM]-x(2)-[ADS]-[ADNT]-x(4)-[ILP]-[GQ]-[NT]-[ILV]-[AES]-[DR]-[AL]-x-[AV]-x(3)-[PS] N 14: 55.2535 5( 5) L-x-G-[GN]-C-x(0,1)-L-x(0,1)-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] O 15: 41.8841 5( 5) V-[IV]-[GP]-G-H-x(3,5)-G-x(2,3)-L-[IL]-x-H-x(2)-[ADQ]-[IL]-[ILV] P 16: 37.4889 5( 5) L-x-[GQT]-x(2)-I-L-x(2,4)-G-x(1,2)-L-x(2)-[ANS]-[ADQT]-x(4)-[GLP]-[GNQ]-x(2)-[ADE]-x(3)-[ATV] Q 17: 34.1154 5( 5) V-x(3)-I-x-[NT]-x(2)-H-[AGT]-D-x-[AI]-G-G R 18: 33.6154 5( 5) V-x(2,3)-I-x-[NT]-x(2)-H-[AGT]-D-x-[AI]-G-G S 19: 33.6154 5( 5) K-x(4,5)-I-x-[NT]-x(2)-H-[AGT]-D-x-[AI]-G-G T 20: 29.9454 5( 5) I-x-[NT]-x(2)-H-[AGT]-D-x-[AI]-G-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 115.7629 5( 5) Y-[ALP]-G-x-[AG]-H-x(0,1)-T-x(0,1)-D-[GN]-I-[FV]-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS] Occurences: 5(5) BLA2_BACCE : 174- 220: kvetf YPGkGH-TeDNIVVWLPQyNILvGGCLVKStsAkdlgNvADAyVNEwS tsien BLA2_BACSP : 174- 220: kvetf YPGkGH-TeDNIVVWLPQyQILaGGCLVKSaeAknlgNvADAyVNEwS tsien BLAB_AERHY : 169- 215: kvraf YAGpAH-TpDGIFVYFPDeQVLyGNCILKEklGnlsfAdVKAyPQTlE rlkam BLAB_BACCE : 173- 219: kvetf YPGkGH-TeDNIVVWLPQyQILaGGCLVKSasSkdlgNvADAyVNEwS tsien BLAB_BACFR : 157- 203: plqcy YLGgGHaT-DNIVVWLPTeNILfGGCMLKDnqAtsigNiSDAdVTAwP ktldk B 2: 111.6154 5( 5) G-x-[AG]-H-x(0,1)-T-x(0,1)-D-[GN]-I-[FV]-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] Occurences: 5(5) BLA2_BACCE : 176- 224: etfyp GkGH-TeDNIVVWLPQyNILvGGCLVKStsAkdlgNvADAyVNEwStsiE nvlkr BLA2_BACSP : 176- 224: etfyp GkGH-TeDNIVVWLPQyQILaGGCLVKSaeAknlgNvADAyVNEwStsiE nmlkr BLAB_AERHY : 171- 219: rafya GpAH-TpDGIFVYFPDeQVLyGNCILKEklGnlsfAdVKAyPQTlErlkA mklpi BLAB_BACCE : 175- 223: etfyp GkGH-TeDNIVVWLPQyQILaGGCLVKSasSkdlgNvADAyVNEwStsiE nvlkr BLAB_BACFR : 159- 207: qcyyl GgGHaT-DNIVVWLPTeNILfGGCMLKDnqAtsigNiSDAdVTAwPktlD kvkak C 3: 104.2753 5( 5) H-x(0,1)-T-x(0,1)-D-[GN]-I-[FV]-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] Occurences: 5(5) BLA2_BACCE : 179- 224: ypgkg H-TeDNIVVWLPQyNILvGGCLVKStsAkdlgNvADAyVNEwStsiE nvlkr BLA2_BACSP : 179- 224: ypgkg H-TeDNIVVWLPQyQILaGGCLVKSaeAknlgNvADAyVNEwStsiE nmlkr BLAB_AERHY : 174- 219: yagpa H-TpDGIFVYFPDeQVLyGNCILKEklGnlsfAdVKAyPQTlErlkA mklpi BLAB_BACCE : 178- 223: ypgkg H-TeDNIVVWLPQyQILaGGCLVKSasSkdlgNvADAyVNEwStsiE nvlkr BLAB_BACFR : 162- 207: ylggg HaT-DNIVVWLPTeNILfGGCMLKDnqAtsigNiSDAdVTAwPktlD kvkak D 4: 104.2753 6( 5) G-x(2,3)-T-x(0,1)-D-[GN]-I-[FV]-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] Occurences: 6(5) BLA2_BACCE : 176- 224: etfyp GkghTeDNIVVWLPQyNILvGGCLVKStsAkdlgNvADAyVNEwStsiE nvlkr BLA2_BACSP : 176- 224: etfyp GkghTeDNIVVWLPQyQILaGGCLVKSaeAknlgNvADAyVNEwStsiE nmlkr BLAB_AERHY : 171- 219: rafya GpahTpDGIFVYFPDeQVLyGNCILKEklGnlsfAdVKAyPQTlErlkA mklpi BLAB_BACCE : 175- 223: etfyp GkghTeDNIVVWLPQyQILaGGCLVKSasSkdlgNvADAyVNEwStsiE nvlkr BLAB_BACFR : 160- 207: cyylg GghaT-DNIVVWLPTeNILfGGCMLKDnqAtsigNiSDAdVTAwPktlD kvkak BLAB_BACFR : 161- 207: yylgg Gha-T-DNIVVWLPTeNILfGGCMLKDnqAtsigNiSDAdVTAwPktlD kvkak E 5: 104.2753 6( 5) G-x(3,4)-T-x(0,1)-D-[GN]-I-[FV]-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] Occurences: 6(5) BLA2_BACCE : 176- 224: etfyp Gkgh-TeDNIVVWLPQyNILvGGCLVKStsAkdlgNvADAyVNEwStsiE nvlkr BLA2_BACSP : 176- 224: etfyp Gkgh-TeDNIVVWLPQyQILaGGCLVKSaeAknlgNvADAyVNEwStsiE nmlkr BLAB_AERHY : 171- 219: rafya Gpah-TpDGIFVYFPDeQVLyGNCILKEklGnlsfAdVKAyPQTlErlkA mklpi BLAB_BACCE : 175- 223: etfyp Gkgh-TeDNIVVWLPQyQILaGGCLVKSasSkdlgNvADAyVNEwStsiE nvlkr BLAB_BACFR : 159- 207: qcyyl GgghaT-DNIVVWLPTeNILfGGCMLKDnqAtsigNiSDAdVTAwPktlD kvkak BLAB_BACFR : 160- 207: cyylg Ggha-T-DNIVVWLPTeNILfGGCMLKDnqAtsigNiSDAdVTAwPktlD kvkak F 6: 101.0637 5( 5) G-x(3)-T-x(0,1)-D-[GN]-I-x(0,1)-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] Occurences: 5(5) BLA2_BACCE : 176- 224: etfyp GkghTeDNIvVWLPQyNILvGGCLVKStsAkdlgNvADAyVNEwStsiE nvlkr BLA2_BACSP : 176- 224: etfyp GkghTeDNIvVWLPQyQILaGGCLVKSaeAknlgNvADAyVNEwStsiE nmlkr BLAB_AERHY : 171- 219: rafya GpahTpDGIfVYFPDeQVLyGNCILKEklGnlsfAdVKAyPQTlErlkA mklpi BLAB_BACCE : 175- 223: etfyp GkghTeDNIvVWLPQyQILaGGCLVKSasSkdlgNvADAyVNEwStsiE nvlkr BLAB_BACFR : 160- 207: cyylg GghaT-DNIvVWLPTeNILfGGCMLKDnqAtsigNiSDAdVTAwPktlD kvkak G 7: 86.5894 5( 5) I-[FV]-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-x(0,1)-L-x(0,1)-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] Occurences: 5(5) BLA2_BACCE : 184- 224: htedn IVVWLPQyNILvGGC-LvKStsAkdlgNvADAyVNEwStsiE nvlkr BLA2_BACSP : 184- 224: htedn IVVWLPQyQILaGGC-LvKSaeAknlgNvADAyVNEwStsiE nmlkr BLAB_AERHY : 179- 219: htpdg IFVYFPDeQVLyGNCiL-KEklGnlsfAdVKAyPQTlErlkA mklpi BLAB_BACCE : 183- 223: htedn IVVWLPQyQILaGGC-LvKSasSkdlgNvADAyVNEwStsiE nvlkr BLAB_BACFR : 167- 207: hatdn IVVWLPTeNILfGGCmL-KDnqAtsigNiSDAdVTAwPktlD kvkak H 8: 86.1116 5( 5) D-[GN]-I-x(0,1)-V-x(2,3)-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] Occurences: 5(5) BLA2_BACCE : 182- 224: kghte DNIvVwl-PQyNILvGGCLVKStsAkdlgNvADAyVNEwStsiE nvlkr BLA2_BACCE : 182- 224: kghte DNI-VvwlPQyNILvGGCLVKStsAkdlgNvADAyVNEwStsiE nvlkr BLA2_BACSP : 182- 224: kghte DNIvVwl-PQyQILaGGCLVKSaeAknlgNvADAyVNEwStsiE nmlkr BLA2_BACSP : 182- 224: kghte DNI-VvwlPQyQILaGGCLVKSaeAknlgNvADAyVNEwStsiE nmlkr BLAB_AERHY : 177- 219: pahtp DGIfVyf-PDeQVLyGNCILKEklGnlsfAdVKAyPQTlErlkA mklpi BLAB_BACCE : 181- 223: kghte DNIvVwl-PQyQILaGGCLVKSasSkdlgNvADAyVNEwStsiE nvlkr BLAB_BACCE : 181- 223: kghte DNI-VvwlPQyQILaGGCLVKSasSkdlgNvADAyVNEwStsiE nvlkr BLAB_BACFR : 165- 207: gghat DNIvVwl-PTeNILfGGCMLKDnqAtsigNiSDAdVTAwPktlD kvkak BLAB_BACFR : 165- 207: gghat DNI-VvwlPTeNILfGGCMLKDnqAtsigNiSDAdVTAwPktlD kvkak I 9: 79.2078 5( 5) V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-x(0,1)-L-x(0,1)-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] Occurences: 5(5) BLA2_BACCE : 186- 224: edniv VWLPQyNILvGGC-LvKStsAkdlgNvADAyVNEwStsiE nvlkr BLA2_BACSP : 186- 224: edniv VWLPQyQILaGGC-LvKSaeAknlgNvADAyVNEwStsiE nmlkr BLAB_AERHY : 181- 219: pdgif VYFPDeQVLyGNCiL-KEklGnlsfAdVKAyPQTlErlkA mklpi BLAB_BACCE : 185- 223: edniv VWLPQyQILaGGC-LvKSasSkdlgNvADAyVNEwStsiE nvlkr BLAB_BACFR : 169- 207: tdniv VWLPTeNILfGGCmL-KDnqAtsigNiSDAdVTAwPktlD kvkak J 10: 78.6685 5( 5) I-x(0,1)-V-x(2,3)-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-[ILM]-[LV]-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] Occurences: 5(5) BLA2_BACCE : 184- 224: htedn IvVwl-PQyNILvGGCLVKStsAkdlgNvADAyVNEwStsiE nvlkr BLA2_BACCE : 184- 224: htedn I-VvwlPQyNILvGGCLVKStsAkdlgNvADAyVNEwStsiE nvlkr BLA2_BACSP : 184- 224: htedn IvVwl-PQyQILaGGCLVKSaeAknlgNvADAyVNEwStsiE nmlkr BLA2_BACSP : 184- 224: htedn I-VvwlPQyQILaGGCLVKSaeAknlgNvADAyVNEwStsiE nmlkr BLAB_AERHY : 179- 219: htpdg IfVyf-PDeQVLyGNCILKEklGnlsfAdVKAyPQTlErlkA mklpi BLAB_BACCE : 183- 223: htedn IvVwl-PQyQILaGGCLVKSasSkdlgNvADAyVNEwStsiE nvlkr BLAB_BACCE : 183- 223: htedn I-VvwlPQyQILaGGCLVKSasSkdlgNvADAyVNEwStsiE nvlkr BLAB_BACFR : 167- 207: hatdn IvVwl-PTeNILfGGCMLKDnqAtsigNiSDAdVTAwPktlD kvkak BLAB_BACFR : 167- 207: hatdn I-VvwlPTeNILfGGCMLKDnqAtsigNiSDAdVTAwPktlD kvkak K 11: 68.4258 5( 5) P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-x(0,1)-L-x(0,1)-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] Occurences: 5(5) BLA2_BACCE : 189- 224: ivvwl PQyNILvGGC-LvKStsAkdlgNvADAyVNEwStsiE nvlkr BLA2_BACSP : 189- 224: ivvwl PQyQILaGGC-LvKSaeAknlgNvADAyVNEwStsiE nmlkr BLAB_AERHY : 184- 219: ifvyf PDeQVLyGNCiL-KEklGnlsfAdVKAyPQTlErlkA mklpi BLAB_BACCE : 188- 223: ivvwl PQyQILaGGC-LvKSasSkdlgNvADAyVNEwStsiE nvlkr BLAB_BACFR : 172- 207: ivvwl PTeNILfGGCmL-KDnqAtsigNiSDAdVTAwPktlD kvkak L 12: 65.8593 5( 5) T-x(4,5)-V-[WY]-[FL]-P-[DQT]-x-[NQ]-[IV]-L-x-G-[GN]-C-x(0,1)-L-x-[DEK]-x(2)-[AEGS]-[ANST]-x(3)-[AGN]-x-[SV]-x-[AD]-x(3)-[ANT] Occurences: 5(5) BLA2_BACCE : 180- 217: pgkgh TednivVWLPQyNILvGGC-LvKstSAkdlGnVaDayvN ewsts BLA2_BACSP : 180- 217: pgkgh TednivVWLPQyQILaGGC-LvKsaEAknlGnVaDayvN ewsts BLAB_AERHY : 175- 213: agpah TpdgifVYFPDeQVLyGNCiLkEklGNlsfAdVkAypqT lerlk BLAB_BACCE : 179- 216: pgkgh TednivVWLPQyQILaGGC-LvKsaSSkdlGnVaDayvN ewsts BLAB_BACFR : 164- 201: gggha Tdniv-VWLPTeNILfGGCmLkDnqATsigNiSdAdvtA wpktl M 13: 60.7783 5( 5) V-x(0,1)-L-x-[GQT]-x(2)-I-L-x(2,4)-G-[CN]-[LM]-x(2)-[ADS]-[ADNT]-x(4)-[ILP]-[GQ]-[NT]-[ILV]-[AES]-[DR]-[AL]-x-[AV]-x(3)-[PS] Occurences: 5(5) BLA2_BACCE : 186- 220: edniv VwLpQynILvg--GCLvkSTsakdLGNVADAyVnewS tsien BLA2_BACSP : 186- 220: edniv VwLpQyqILag--GCLvkSAeaknLGNVADAyVnewS tsien BLAB_AERHY : 188- 223: fpdeq V-LyGncILkeklGNLsfADvkayPQTLERLkAmklP iktvi BLAB_BACCE : 185- 219: edniv VwLpQyqILag--GCLvkSAsskdLGNVADAyVnewS tsien BLAB_BACFR : 169- 203: tdniv VwLpTenILfg--GCMlkDNqatsIGNISDAdVtawP ktldk N 14: 55.2535 5( 5) L-x-G-[GN]-C-x(0,1)-L-x(0,1)-K-[DES]-x(2)-[AGS]-x(4)-[AN]-x-[ASV]-[DK]-A-x-[PV]-[NQT]-[AET]-x-[EPS]-x(3)-[ADE] Occurences: 5(5) BLA2_BACCE : 194- 224: pqyni LvGGC-LvKStsAkdlgNvADAyVNEwStsiE nvlkr BLA2_BACSP : 194- 224: pqyqi LaGGC-LvKSaeAknlgNvADAyVNEwStsiE nmlkr BLAB_AERHY : 189- 219: pdeqv LyGNCiL-KEklGnlsfAdVKAyPQTlErlkA mklpi BLAB_BACCE : 193- 223: pqyqi LaGGC-LvKSasSkdlgNvADAyVNEwStsiE nvlkr BLAB_BACFR : 177- 207: pteni LfGGCmL-KDnqAtsigNiSDAdVTAwPktlD kvkak O 15: 41.8841 5( 5) V-[IV]-[GP]-G-H-x(3,5)-G-x(2,3)-L-[IL]-x-H-x(2)-[ADQ]-[IL]-[ILV] Occurences: 5(5) BLA2_BACCE : 236- 256: rnina VVPGHgev--GdkgLLlHtlDLL k BLA2_BACSP : 236- 256: rninl VVPGHgkv--GdkgLLlHtlDLL k BLAB_AERHY : 227- 248: lpikt VIGGHdsplhGpe-LIdHyeALI kaapq BLAB_BACCE : 235- 255: gninl VVPGHgev--GdrgLLlHtlDLL k BLAB_BACFR : 219- 239: psary VVPGHgdyg-Gte-LIeHtkQIV nqyie BLAB_BACFR : 219- 239: psary VVPGHgdy--GgteLIeHtkQIV nqyie P 16: 37.4889 5( 5) L-x-[GQT]-x(2)-I-L-x(2,4)-G-x(1,2)-L-x(2)-[ANS]-[ADQT]-x(4)-[GLP]-[GNQ]-x(2)-[ADE]-x(3)-[ATV] Occurences: 5(5) BLA2_BACCE : 188- 216: nivvw LpQynILvg--Gc-LvkSTsakdLGnvAdayV newst BLA2_BACSP : 188- 216: nivvw LpQyqILag--Gc-LvkSAeaknLGnvAdayV newst BLAB_AERHY : 189- 219: pdeqv LyGncILkeklGn-LsfADvkayPQtlErlkA mklpi BLAB_BACCE : 187- 215: nivvw LpQyqILag--Gc-LvkSAsskdLGnvAdayV newst BLAB_BACFR : 171- 200: nivvw LpTenILfg--GcmLkdNQatsiGNisDadvT awpkt Q 17: 34.1154 5( 5) V-x(3)-I-x-[NT]-x(2)-H-[AGT]-D-x-[AI]-G-G Occurences: 5(5) BLA2_BACCE : 109- 124: kfqkr VtdvIiThaHADrIGG iktlk BLA2_BACSP : 109- 124: kfqkr VtdvIiThaHADrIGG italk BLAB_AERHY : 88- 103: vsrkp VlevInTnyHTDrAGG naywk BLAB_BACCE : 108- 123: kfkkr VtdvIiThaHADrIGG mktlk BLAB_BACFR : 92- 107: slhak VttfIpNhwHGDcIGG lgylq R 18: 33.6154 5( 5) V-x(2,3)-I-x-[NT]-x(2)-H-[AGT]-D-x-[AI]-G-G Occurences: 5(5) BLA2_BACCE : 109- 124: kfqkr VtdvIiThaHADrIGG iktlk BLA2_BACSP : 109- 124: kfqkr VtdvIiThaHADrIGG italk BLAB_AERHY : 88- 103: vsrkp VlevInTnyHTDrAGG naywk BLAB_BACCE : 108- 123: kfkkr VtdvIiThaHADrIGG mktlk BLAB_BACFR : 92- 107: slhak VttfIpNhwHGDcIGG lgylq S 19: 33.6154 5( 5) K-x(4,5)-I-x-[NT]-x(2)-H-[AGT]-D-x-[AI]-G-G Occurences: 5(5) BLA2_BACCE : 107- 124: ekkfq KrvtdvIiThaHADrIGG iktlk BLA2_BACSP : 107- 124: ekkfq KrvtdvIiThaHADrIGG italk BLAB_AERHY : 86- 103: krvsr KpvlevInTnyHTDrAGG naywk BLAB_BACCE : 106- 123: ekkfk KrvtdvIiThaHADrIGG mktlk BLAB_BACFR : 91- 107: dslha Kvttf-IpNhwHGDcIGG lgylq T 20: 29.9454 5( 5) I-x-[NT]-x(2)-H-[AGT]-D-x-[AI]-G-G Occurences: 5(5) BLA2_BACCE : 113- 124: rvtdv IiThaHADrIGG iktlk BLA2_BACSP : 113- 124: rvtdv IiThaHADrIGG italk BLAB_AERHY : 92- 103: pvlev InTnyHTDrAGG naywk BLAB_BACCE : 112- 123: rvtdv IiThaHADrIGG mktlk BLAB_BACFR : 96- 107: kvttf IpNhwHGDcIGG lgylq Number of patterns evaluated by Pratt:6227 Total running time: 2 seconds