------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file BETA_ELIM_LYASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename BETA_ELIM_LYASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: TNA1_SYMTH 453 TNA2_SYMTH 452 TNAA_ECOLI 471 TNAA_PROVU 467 TPL_CITFR 456 TPL_ERWHE 456 TPL_ESCIN 456 TPL_SYMTH 458 Pratt run started at Thu Feb 6 18:59:14 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 61.5508 8( 8) N-x-F-x-L-x-S-x(4)-I-D-L-L-T-D-S-G-T-x-A-x(1,3)-S 2: 60.5508 8( 8) F-x-L-x-S-x(4)-I-D-L-L-T-D-S-G-T-x-A-x(1,3)-S-x(0,2)-Q 3: 57.3807 8( 8) N-x-F-x(0,1)-L-x(2)-S-x(3,4)-I-D-L-L-T-D-S-G-T-x-A 4: 57.3807 8( 8) N-x(1,2)-F-L-x(2)-S-x(3,4)-I-D-L-L-T-D-S-G-T-x-A 5: 56.3807 8( 8) L-x-S-x(4)-I-D-L-L-T-D-S-G-T-x-A-x(1,3)-S-x(0,2)-Q 6: 52.2107 8( 8) S-x(4)-I-D-L-L-T-D-S-G-T-x-A-x(1,3)-S-x(0,2)-Q 7: 49.0406 10( 8) L-x(2,3)-S-x(3,4)-I-D-L-L-T-D-S-G-T-x-A 8: 48.5406 11( 8) S-x(3,4)-I-D-L-L-T-D-S-G-T-x-A-x(1,3)-S 9: 48.0406 8( 8) P-x(0,2)-A-x(3)-A-x(1,3)-Y-x(3)-G-x-R-x(2)-E-x-G-x(4)-G-R-x(3)-T-G 10: 48.0406 8( 8) I-D-L-L-T-D-S-G-T-x-A-x(1,3)-S-x(0,2)-Q 11: 45.3706 8( 8) I-x(3,4)-T-x-N-x-A-G-G-Q-P-V-S-x(2)-N 12: 44.8706 8( 8) I-x(4)-T-x(0,1)-N-x(1,2)-A-G-G-Q-P-V-S-x(2)-N 13: 44.3706 9( 8) A-x(3,4)-A-x(1,3)-Y-x(3)-G-x-R-x(2)-E-x-G-x(4)-G-R-x(3)-T-G 14: 44.3706 9( 8) A-x(2,3)-A-x(1,3)-Y-x(3)-G-x-R-x(2)-E-x-G-x(4)-G-R-x(3)-T-G 15: 43.8706 11( 8) V-x(0,2)-T-x(1,3)-N-x-A-G-G-Q-P-V-S-x(2)-N 16: 43.8706 8( 8) D-L-L-T-D-S-G-T-x-A-x(1,3)-S-x(0,2)-Q 17: 41.7005 8( 8) T-x-N-x-A-G-G-Q-P-V-S-x(2)-N 18: 40.7005 13( 8) A-x(1,3)-Y-x(3)-G-x-R-x(2)-E-x-G-x(4)-G-R-x(3)-T-G 19: 40.7005 10( 8) T-x(1,2)-N-x(1,2)-A-G-G-Q-P-V-S-x(2)-N 20: 40.7005 12( 8) T-x(1,3)-N-x-A-G-G-Q-P-V-S-x(2)-N Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 137.4971 8( 8) N-[PT]-F-x(0,1)-L-x-[DNRS]-S-x(3,4)-I-D-L-L-T-D-S-G-T-[GN]-A-[MV]-[ST]-[DQ]-x(3)-[AGS]-[AG]-[LM]-[IM]-x-G-D-E-[AS]-Y-[AS]-G-[AS]-[ERS]-[NS]-[FY]-[FY]-x-L-x-[DEKR] B 2: 132.1142 8( 8) N-x(1,2)-F-L-x(2)-S-x(3,4)-I-D-L-L-T-D-S-G-T-[GN]-A-[MV]-[ST]-[DQ]-x(3)-[AGS]-[AG]-[LM]-[IM]-x-G-D-E-[AS]-Y-[AS]-G-[AS]-[ERS]-[NS]-[FY]-[FY]-x-L-x-[DEKR] C 3: 129.9169 8( 8) T-[CNSV]-N-x-A-G-G-Q-P-V-S-[LM]-[AS]-N-[ILM]-[KR]-[AE]-x(3)-[ILMV]-[ACT]-x(2)-[HY]-[DG]-[IV]-x-[ILMV]-x(2)-D-[ASV]-[AT]-R-x-[ACV]-E-N-[AC]-[HY]-F-I-[KR]-x-[QR]-[DE]-x(2)-[FY] D 4: 129.8298 8( 8) I-[CNV]-x-[AT]-[ILV]-T-x(0,1)-N-x(1,2)-A-G-G-Q-P-V-S-[LM]-[AS]-N-[ILM]-[KR]-[AE]-x(3)-[ILMV]-[ACT]-x(2)-[HY]-[DG]-[IV]-x-[ILMV]-x(2)-D-[ASV]-[AT]-R-x-[ACV]-E-N-[AC]-[HY]-F-I-[KR] E 5: 126.9599 10( 8) L-x(2,3)-S-x(3,4)-I-D-L-L-T-D-S-G-T-[GN]-A-[MV]-[ST]-[DQ]-x(3)-[AGS]-[AG]-[LM]-[IM]-x-G-D-E-[AS]-Y-[AS]-G-[AS]-[ERS]-[NS]-[FY]-[FY]-x-L-x-[DEKR]-x-[AV] F 6: 124.0610 8( 8) I-x(3,4)-T-[CNSV]-N-x-A-G-G-Q-P-V-S-[LM]-[AS]-N-[ILM]-[KR]-[AE]-x(3)-[ILMV]-[ACT]-x(2)-[HY]-[DG]-[IV]-x-[ILMV]-x(2)-D-[ASV]-[AT]-R-x-[ACV]-E-N-[AC]-[HY]-F-I-[KR] G 7: 123.4978 10( 8) T-x(1,2)-N-x(1,2)-A-G-G-Q-P-V-S-[LM]-[AS]-N-[ILM]-[KR]-[AE]-x(3)-[ILMV]-[ACT]-x(2)-[HY]-[DG]-[IV]-x-[ILMV]-x(2)-D-[ASV]-[AT]-R-x-[ACV]-E-N-[AC]-[HY]-F-I-[KR]-x-[QR]-[DE] H 8: 123.4978 12( 8) T-x(1,3)-N-x-A-G-G-Q-P-V-S-[LM]-[AS]-N-[ILM]-[KR]-[AE]-x(3)-[ILMV]-[ACT]-x(2)-[HY]-[DG]-[IV]-x-[ILMV]-x(2)-D-[ASV]-[AT]-R-x-[ACV]-E-N-[AC]-[HY]-F-I-[KR]-x-[QR]-[DE] I 9: 120.3264 11( 8) V-x(0,2)-T-x(1,3)-N-x-A-G-G-Q-P-V-S-[LM]-[AS]-N-[ILM]-[KR]-[AE]-x(3)-[ILMV]-[ACT]-x(2)-[HY]-[DG]-[IV]-x-[ILMV]-x(2)-D-[ASV]-[AT]-R-x-[ACV]-E-N-[AC]-[HY]-F-I-[KR] J 10: 110.7128 8( 8) F-[FL]-L-x-S-x-[AD]-[IV]-[FY]-I-D-L-L-T-D-S-G-T-[GN]-A-x(1,3)-S-x(0,2)-Q-x-[AGQS]-x-[LM]-x(2)-[DG]-[DE]-[AE]-x(2)-[AG]-[GS]-x-[ERS]-x-[FY]-x(2)-[AL]-[EK] K 11: 103.2747 8( 8) L-x-S-x-[AD]-[IV]-[FY]-I-D-L-L-T-D-S-G-T-[GN]-A-x(1,3)-S-x(0,2)-Q-x-[AGQS]-x-[LM]-x(2)-[DG]-[DE]-[AE]-x(2)-[AG]-[GS]-x-[ERS]-x-[FY]-x(2)-[AL]-[EK] L 12: 99.1046 8( 8) S-x-[AD]-[IV]-[FY]-I-D-L-L-T-D-S-G-T-[GN]-A-x(1,3)-S-x(0,2)-Q-x-[AGQS]-x-[LM]-x(2)-[DG]-[DE]-[AE]-x(2)-[AG]-[GS]-x-[ERS]-x-[FY]-x(2)-[AL]-[EK] M 13: 85.2890 8( 8) I-D-L-L-T-D-S-G-T-[GN]-A-x(1,3)-S-x(0,2)-Q-x-[AGQS]-x-[LM]-x(2)-[DG]-[DE]-[AE]-x(2)-[AG]-[GS]-x-[ERS]-x-[FY]-x(2)-[AL]-[EK] N 14: 81.1190 8( 8) D-L-L-T-D-S-G-T-[GN]-A-x(1,3)-S-x(0,2)-Q-x-[AGQS]-x-[LM]-x(2)-[DG]-[DE]-[AE]-x(2)-[AG]-[GS]-x-[ERS]-x-[FY]-x(2)-[AL]-[EK] O 15: 81.0200 8( 8) N-x-F-[FL]-L-x-S-x-[AD]-[IV]-[FY]-I-D-L-L-T-D-S-G-T-[GN]-A-x(1,3)-S-x(2)-[AQ] P 16: 67.6306 8( 8) P-x(0,2)-A-x(3)-A-x(1,3)-Y-x(2)-[AGST]-G-[IV]-R-[AST]-[MV]-E-x-G-x-[FILV]-x(2)-G-R-[DNS]-x(2)-T-G-[EK] Q 17: 63.9605 9( 8) A-x(3,4)-A-x(1,3)-Y-x(2)-[AGST]-G-[IV]-R-[AST]-[MV]-E-x-G-x-[FILV]-x(2)-G-R-[DNS]-x(2)-T-G-[EK] R 18: 63.9605 9( 8) A-x(2,3)-A-x(1,3)-Y-x(2)-[AGST]-G-[IV]-R-[AST]-[MV]-E-x-G-x-[FILV]-x(2)-G-R-[DNS]-x(2)-T-G-[EK] S 19: 58.1004 13( 8) A-x(1,3)-Y-x(3)-G-[IV]-R-[AST]-[MV]-E-x-G-x-[FILV]-x(2)-G-R-[DNS]-x(2)-T-G-[EK] T 20: 55.0963 11( 8) S-x(3,4)-I-D-L-L-T-D-S-G-T-[GN]-A-x(1,3)-S-x(2)-[AQ] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 137.4971 8( 8) N-[PT]-F-x(0,1)-L-x-[DNRS]-S-x(3,4)-I-D-L-L-T-D-S-G-T-[GN]-A-[MV]-[ST]-[DQ]-x(3)-[AGS]-[AG]-[LM]-[IM]-x-G-D-E-[AS]-Y-[AS]-G-[AS]-[ERS]-[NS]-[FY]-[FY]-x-L-x-[DEKR] Occurences: 8(8) TNA1_SYMTH : 33- 81: keahy NPFfLrSSdvy-IDLLTDSGTGAMSQfqwSAMMlGDESYAGASSYYrLkE tvtdi TNA2_SYMTH : 32- 80: kaahy NPFlLrSSdvy-IDLLTDSGTGAMSQfqwSAMMlGDESYAGASSYYrLkE avtdi TNA2_SYMTH : 32- 80: kaahy NPF-LlRSsdvyIDLLTDSGTGAMSQfqwSAMMlGDESYAGASSYYrLkE avtdi TNAA_ECOLI : 37- 85: iksgm NPF-LlDSedvfIDLLTDSGTGAVTQsmqAAMMrGDEAYSGSRSYYaLaE svkni TNAA_PROVU : 35- 83: keagy NPFlLpSSavy-IDLLTDSGTNAMSDhqwAAMItGDEAYAGSRNYYdLkD kakel TPL_CITFR : 34- 82: qeagy NTF-LlNSkdiyIDLLTDSGTNAMSDkqwAGMMmGDEAYAGSENFYhLeR tvqel TPL_ERWHE : 34- 82: qeagy NTF-LlNSkdiyIDLLTDSGTNAMSDkqwAGMMiGDEAYAGSENFYhLeK tvkel TPL_ESCIN : 34- 82: qeagy NTF-LlNSkdiyIDLLTDSGTNAMSDkqwAGMMmGDEAYAGSENFYhLeR tvqel TPL_SYMTH : 35- 83: reagy NTF-LlRSedvyIDLLTDSGTNAMSDrqwGALMmGDEAYAGARSFFrLeE avrei B 2: 132.1142 8( 8) N-x(1,2)-F-L-x(2)-S-x(3,4)-I-D-L-L-T-D-S-G-T-[GN]-A-[MV]-[ST]-[DQ]-x(3)-[AGS]-[AG]-[LM]-[IM]-x-G-D-E-[AS]-Y-[AS]-G-[AS]-[ERS]-[NS]-[FY]-[FY]-x-L-x-[DEKR] Occurences: 8(8) TNA1_SYMTH : 33- 81: keahy NpfFLrsSdvy-IDLLTDSGTGAMSQfqwSAMMlGDESYAGASSYYrLkE tvtdi TNA2_SYMTH : 32- 80: kaahy Np-FLlrSsdvyIDLLTDSGTGAMSQfqwSAMMlGDESYAGASSYYrLkE avtdi TNAA_ECOLI : 37- 85: iksgm Np-FLldSedvfIDLLTDSGTGAVTQsmqAAMMrGDEAYSGSRSYYaLaE svkni TNAA_PROVU : 35- 83: keagy Np-FLlpSsavyIDLLTDSGTNAMSDhqwAAMItGDEAYAGSRNYYdLkD kakel TPL_CITFR : 34- 82: qeagy Nt-FLlnSkdiyIDLLTDSGTNAMSDkqwAGMMmGDEAYAGSENFYhLeR tvqel TPL_ERWHE : 34- 82: qeagy Nt-FLlnSkdiyIDLLTDSGTNAMSDkqwAGMMiGDEAYAGSENFYhLeK tvkel TPL_ESCIN : 34- 82: qeagy Nt-FLlnSkdiyIDLLTDSGTNAMSDkqwAGMMmGDEAYAGSENFYhLeR tvqel TPL_SYMTH : 35- 83: reagy Nt-FLlrSedvyIDLLTDSGTNAMSDrqwGALMmGDEAYAGARSFFrLeE avrei C 3: 129.9169 8( 8) T-[CNSV]-N-x-A-G-G-Q-P-V-S-[LM]-[AS]-N-[ILM]-[KR]-[AE]-x(3)-[ILMV]-[ACT]-x(2)-[HY]-[DG]-[IV]-x-[ILMV]-x(2)-D-[ASV]-[AT]-R-x-[ACV]-E-N-[AC]-[HY]-F-I-[KR]-x-[QR]-[DE]-x(2)-[FY] Occurences: 8(8) TNA1_SYMTH : 180- 229: ivmtv TNNsAGGQPVSMANIREtyqIArkYGVlVlfDVARyAENCHFIRmREegY adkhp TNA2_SYMTH : 179- 228: ivmtv TNNsAGGQPVSMANIREtsrIArkYGIlLlfDVARyAENCHFIRmREegY adkap TNAA_ECOLI : 196- 245: ivati TSNsAGGQPVSLANLKAmysIAkkYDIpVvmDSARfAENAYFIKqREaeY kdwti TNAA_PROVU : 192- 241: ivstv TCNsAGGQPVSMSNLKEvyeIAkqHGIfVvmDSARfCENAYFIKaRDpkY knati TPL_CITFR : 183- 232: iclav TVNlAGGQPVSMANMRAvreLTeaHGIkVfyDATRcVENAYFIKeQEqgF enksi TPL_ERWHE : 183- 232: iclav TVNlAGGQPVSMANMRAvheMAstYGIkIyyDATRcVENAYFIKeQEagY envsi TPL_ESCIN : 183- 232: iclav TVNlAGGQPVSMANMRAvreLTaaHGIkVfyDATRcVENAYFIKeQEqgF enksi TPL_SYMTH : 184- 233: inval TVNmAGGQPVSMANLREvrkVCdrHGIrMwsDATRaVENAYFIKeREegY qdkpv D 4: 129.8298 8( 8) I-[CNV]-x-[AT]-[ILV]-T-x(0,1)-N-x(1,2)-A-G-G-Q-P-V-S-[LM]-[AS]-N-[ILM]-[KR]-[AE]-x(3)-[ILMV]-[ACT]-x(2)-[HY]-[DG]-[IV]-x-[ILMV]-x(2)-D-[ASV]-[AT]-R-x-[ACV]-E-N-[AC]-[HY]-F-I-[KR] Occurences: 8(8) TNA1_SYMTH : 175- 223: eniac IVmTVTnNs-AGGQPVSMANIREtyqIArkYGVlVlfDVARyAENCHFIR mreeg TNA1_SYMTH : 175- 223: eniac IVmTVT-NnsAGGQPVSMANIREtyqIArkYGVlVlfDVARyAENCHFIR mreeg TNA2_SYMTH : 174- 222: eniac IVmTVTnNs-AGGQPVSMANIREtsrIArkYGIlLlfDVARyAENCHFIR mreeg TNA2_SYMTH : 174- 222: eniac IVmTVT-NnsAGGQPVSMANIREtsrIArkYGIlLlfDVARyAENCHFIR mreeg TNAA_ECOLI : 191- 239: nnvpy IVaTITsNs-AGGQPVSLANLKAmysIAkkYDIpVvmDSARfAENAYFIK qreae TNAA_PROVU : 187- 235: dniva IVsTVTcNs-AGGQPVSMSNLKEvyeIAkqHGIfVvmDSARfCENAYFIK ardpk TPL_CITFR : 178- 226: eniay IClAVTvNl-AGGQPVSMANMRAvreLTeaHGIkVfyDATRcVENAYFIK eqeqg TPL_ERWHE : 178- 226: eniay IClAVTvNl-AGGQPVSMANMRAvheMAstYGIkIyyDATRcVENAYFIK eqeag TPL_ESCIN : 178- 226: eniay IClAVTvNl-AGGQPVSMANMRAvreLTaaHGIkVfyDATRcVENAYFIK eqeqg TPL_SYMTH : 179- 227: dkipy INvALTvNm-AGGQPVSMANLREvrkVCdrHGIrMwsDATRaVENAYFIK ereeg E 5: 126.9599 10( 8) L-x(2,3)-S-x(3,4)-I-D-L-L-T-D-S-G-T-[GN]-A-[MV]-[ST]-[DQ]-x(3)-[AGS]-[AG]-[LM]-[IM]-x-G-D-E-[AS]-Y-[AS]-G-[AS]-[ERS]-[NS]-[FY]-[FY]-x-L-x-[DEKR]-x-[AV] Occurences: 10(8) TNA1_SYMTH : 37- 83: ynpff Lrs-Sdvy-IDLLTDSGTGAMSQfqwSAMMlGDESYAGASSYYrLkEtV tditg TNA2_SYMTH : 35- 82: hynpf LlrsSdvy-IDLLTDSGTGAMSQfqwSAMMlGDESYAGASSYYrLkEaV tditg TNA2_SYMTH : 35- 82: hynpf Llr-SsdvyIDLLTDSGTGAMSQfqwSAMMlGDESYAGASSYYrLkEaV tditg TNA2_SYMTH : 36- 82: ynpfl Lrs-Sdvy-IDLLTDSGTGAMSQfqwSAMMlGDESYAGASSYYrLkEaV tditg TNAA_ECOLI : 40- 87: gmnpf Lld-SedvfIDLLTDSGTGAVTQsmqAAMMrGDEAYSGSRSYYaLaEsV knifg TNAA_PROVU : 38- 85: gynpf LlpsSavy-IDLLTDSGTNAMSDhqwAAMItGDEAYAGSRNYYdLkDkA kelfn TNAA_PROVU : 38- 85: gynpf Llp-SsavyIDLLTDSGTNAMSDhqwAAMItGDEAYAGSRNYYdLkDkA kelfn TNAA_PROVU : 39- 85: ynpfl Lps-Savy-IDLLTDSGTNAMSDhqwAAMItGDEAYAGSRNYYdLkDkA kelfn TPL_CITFR : 37- 84: gyntf Lln-SkdiyIDLLTDSGTNAMSDkqwAGMMmGDEAYAGSENFYhLeRtV qelfg TPL_ERWHE : 37- 84: gyntf Lln-SkdiyIDLLTDSGTNAMSDkqwAGMMiGDEAYAGSENFYhLeKtV kelfg TPL_ESCIN : 37- 84: gyntf Lln-SkdiyIDLLTDSGTNAMSDkqwAGMMmGDEAYAGSENFYhLeRtV qelfg TPL_SYMTH : 38- 85: gyntf Llr-SedvyIDLLTDSGTNAMSDrqwGALMmGDEAYAGARSFFrLeEaV reiyg F 6: 124.0610 8( 8) I-x(3,4)-T-[CNSV]-N-x-A-G-G-Q-P-V-S-[LM]-[AS]-N-[ILM]-[KR]-[AE]-x(3)-[ILMV]-[ACT]-x(2)-[HY]-[DG]-[IV]-x-[ILMV]-x(2)-D-[ASV]-[AT]-R-x-[ACV]-E-N-[AC]-[HY]-F-I-[KR] Occurences: 8(8) TNA1_SYMTH : 175- 223: eniac IvmtvTNNsAGGQPVSMANIREtyqIArkYGVlVlfDVARyAENCHFIR mreeg TNA2_SYMTH : 174- 222: eniac IvmtvTNNsAGGQPVSMANIREtsrIArkYGIlLlfDVARyAENCHFIR mreeg TNAA_ECOLI : 191- 239: nnvpy IvatiTSNsAGGQPVSLANLKAmysIAkkYDIpVvmDSARfAENAYFIK qreae TNAA_PROVU : 187- 235: dniva IvstvTCNsAGGQPVSMSNLKEvyeIAkqHGIfVvmDSARfCENAYFIK ardpk TPL_CITFR : 178- 226: eniay IclavTVNlAGGQPVSMANMRAvreLTeaHGIkVfyDATRcVENAYFIK eqeqg TPL_ERWHE : 178- 226: eniay IclavTVNlAGGQPVSMANMRAvheMAstYGIkIyyDATRcVENAYFIK eqeag TPL_ESCIN : 178- 226: eniay IclavTVNlAGGQPVSMANMRAvreLTaaHGIkVfyDATRcVENAYFIK eqeqg TPL_SYMTH : 179- 227: dkipy InvalTVNmAGGQPVSMANLREvrkVCdrHGIrMwsDATRaVENAYFIK ereeg G 7: 123.4978 10( 8) T-x(1,2)-N-x(1,2)-A-G-G-Q-P-V-S-[LM]-[AS]-N-[ILM]-[KR]-[AE]-x(3)-[ILMV]-[ACT]-x(2)-[HY]-[DG]-[IV]-x-[ILMV]-x(2)-D-[ASV]-[AT]-R-x-[ACV]-E-N-[AC]-[HY]-F-I-[KR]-x-[QR]-[DE] Occurences: 10(8) TNA1_SYMTH : 178- 226: acivm TvtNnsAGGQPVSMANIREtyqIArkYGVlVlfDVARyAENCHFIRmRE egyad TNA1_SYMTH : 180- 226: ivmtv Tn-Ns-AGGQPVSMANIREtyqIArkYGVlVlfDVARyAENCHFIRmRE egyad TNA2_SYMTH : 177- 225: acivm TvtNnsAGGQPVSMANIREtsrIArkYGIlLlfDVARyAENCHFIRmRE egyad TNA2_SYMTH : 179- 225: ivmtv Tn-Ns-AGGQPVSMANIREtsrIArkYGIlLlfDVARyAENCHFIRmRE egyad TNAA_ECOLI : 196- 242: ivati Ts-Ns-AGGQPVSLANLKAmysIAkkYDIpVvmDSARfAENAYFIKqRE aeykd TNAA_PROVU : 192- 238: ivstv Tc-Ns-AGGQPVSMSNLKEvyeIAkqHGIfVvmDSARfCENAYFIKaRD pkykn TPL_CITFR : 183- 229: iclav Tv-Nl-AGGQPVSMANMRAvreLTeaHGIkVfyDATRcVENAYFIKeQE qgfen TPL_ERWHE : 183- 229: iclav Tv-Nl-AGGQPVSMANMRAvheMAstYGIkIyyDATRcVENAYFIKeQE agyen TPL_ESCIN : 183- 229: iclav Tv-Nl-AGGQPVSMANMRAvreLTaaHGIkVfyDATRcVENAYFIKeQE qgfen TPL_SYMTH : 184- 230: inval Tv-Nm-AGGQPVSMANLREvrkVCdrHGIrMwsDATRaVENAYFIKeRE egyqd H 8: 123.4978 12( 8) T-x(1,3)-N-x-A-G-G-Q-P-V-S-[LM]-[AS]-N-[ILM]-[KR]-[AE]-x(3)-[ILMV]-[ACT]-x(2)-[HY]-[DG]-[IV]-x-[ILMV]-x(2)-D-[ASV]-[AT]-R-x-[ACV]-E-N-[AC]-[HY]-F-I-[KR]-x-[QR]-[DE] Occurences: 12(8) TNA1_SYMTH : 178- 226: acivm TvtnNsAGGQPVSMANIREtyqIArkYGVlVlfDVARyAENCHFIRmRE egyad TNA1_SYMTH : 180- 226: ivmtv Tn--NsAGGQPVSMANIREtyqIArkYGVlVlfDVARyAENCHFIRmRE egyad TNA2_SYMTH : 177- 225: acivm TvtnNsAGGQPVSMANIREtsrIArkYGIlLlfDVARyAENCHFIRmRE egyad TNA2_SYMTH : 179- 225: ivmtv Tn--NsAGGQPVSMANIREtsrIArkYGIlLlfDVARyAENCHFIRmRE egyad TNAA_ECOLI : 194- 242: pyiva TitsNsAGGQPVSLANLKAmysIAkkYDIpVvmDSARfAENAYFIKqRE aeykd TNAA_ECOLI : 196- 242: ivati Ts--NsAGGQPVSLANLKAmysIAkkYDIpVvmDSARfAENAYFIKqRE aeykd TNAA_PROVU : 190- 238: vaivs TvtcNsAGGQPVSMSNLKEvyeIAkqHGIfVvmDSARfCENAYFIKaRD pkykn TNAA_PROVU : 192- 238: ivstv Tc--NsAGGQPVSMSNLKEvyeIAkqHGIfVvmDSARfCENAYFIKaRD pkykn TPL_CITFR : 183- 229: iclav Tv--NlAGGQPVSMANMRAvreLTeaHGIkVfyDATRcVENAYFIKeQE qgfen TPL_ERWHE : 183- 229: iclav Tv--NlAGGQPVSMANMRAvheMAstYGIkIyyDATRcVENAYFIKeQE agyen TPL_ESCIN : 183- 229: iclav Tv--NlAGGQPVSMANMRAvreLTaaHGIkVfyDATRcVENAYFIKeQE qgfen TPL_SYMTH : 184- 230: inval Tv--NmAGGQPVSMANLREvrkVCdrHGIrMwsDATRaVENAYFIKeRE egyqd I 9: 120.3264 11( 8) V-x(0,2)-T-x(1,3)-N-x-A-G-G-Q-P-V-S-[LM]-[AS]-N-[ILM]-[KR]-[AE]-x(3)-[ILMV]-[ACT]-x(2)-[HY]-[DG]-[IV]-x-[ILMV]-x(2)-D-[ASV]-[AT]-R-x-[ACV]-E-N-[AC]-[HY]-F-I-[KR] Occurences: 11(8) TNA1_SYMTH : 176- 223: niaci Vm-TvtnNsAGGQPVSMANIREtyqIArkYGVlVlfDVARyAENCHFIR mreeg TNA1_SYMTH : 179- 223: civmt V--Tn--NsAGGQPVSMANIREtyqIArkYGVlVlfDVARyAENCHFIR mreeg TNA2_SYMTH : 175- 222: niaci Vm-TvtnNsAGGQPVSMANIREtsrIArkYGIlLlfDVARyAENCHFIR mreeg TNA2_SYMTH : 178- 222: civmt V--Tn--NsAGGQPVSMANIREtsrIArkYGIlLlfDVARyAENCHFIR mreeg TNAA_ECOLI : 192- 239: nvpyi Va-TitsNsAGGQPVSLANLKAmysIAkkYDIpVvmDSARfAENAYFIK qreae TNAA_PROVU : 188- 235: nivai Vs-TvtcNsAGGQPVSMSNLKEvyeIAkqHGIfVvmDSARfCENAYFIK ardpk TNAA_PROVU : 191- 235: aivst V--Tc--NsAGGQPVSMSNLKEvyeIAkqHGIfVvmDSARfCENAYFIK ardpk TPL_CITFR : 182- 226: yicla V--Tv--NlAGGQPVSMANMRAvreLTeaHGIkVfyDATRcVENAYFIK eqeqg TPL_ERWHE : 182- 226: yicla V--Tv--NlAGGQPVSMANMRAvheMAstYGIkIyyDATRcVENAYFIK eqeag TPL_ESCIN : 182- 226: yicla V--Tv--NlAGGQPVSMANMRAvreLTaaHGIkVfyDATRcVENAYFIK eqeqg TPL_SYMTH : 181- 227: ipyin ValTv--NmAGGQPVSMANLREvrkVCdrHGIrMwsDATRaVENAYFIK ereeg J 10: 110.7128 8( 8) F-[FL]-L-x-S-x-[AD]-[IV]-[FY]-I-D-L-L-T-D-S-G-T-[GN]-A-x(1,3)-S-x(0,2)-Q-x-[AGQS]-x-[LM]-x(2)-[DG]-[DE]-[AE]-x(2)-[AG]-[GS]-x-[ERS]-x-[FY]-x(2)-[AL]-[EK] Occurences: 8(8) TNA1_SYMTH : 35- 80: ahynp FFLrSsDVYIDLLTDSGTGAm--SqfQwSaMmlGDEsyAGaSsYyrLK etvtd TNA2_SYMTH : 34- 79: ahynp FLLrSsDVYIDLLTDSGTGAm--SqfQwSaMmlGDEsyAGaSsYyrLK eavtd TNAA_ECOLI : 39- 85: sgmnp FLLdSeDVFIDLLTDSGTGAvtqSm-QaAmMrgDEAysGSrSyYalAE svkni TNAA_PROVU : 37- 82: agynp FLLpSsAVYIDLLTDSGTNAm--SdhQwAaMitGDEayAGsRnYydLK dkake TPL_CITFR : 36- 81: agynt FLLnSkDIYIDLLTDSGTNAm--SdkQwAgMmmGDEayAGsEnFyhLE rtvqe TPL_ERWHE : 36- 81: agynt FLLnSkDIYIDLLTDSGTNAm--SdkQwAgMmiGDEayAGsEnFyhLE ktvke TPL_ESCIN : 36- 81: agynt FLLnSkDIYIDLLTDSGTNAm--SdkQwAgMmmGDEayAGsEnFyhLE rtvqe TPL_SYMTH : 37- 82: agynt FLLrSeDVYIDLLTDSGTNAm--SdrQwGaLmmGDEayAGaRsFfrLE eavre K 11: 103.2747 8( 8) L-x-S-x-[AD]-[IV]-[FY]-I-D-L-L-T-D-S-G-T-[GN]-A-x(1,3)-S-x(0,2)-Q-x-[AGQS]-x-[LM]-x(2)-[DG]-[DE]-[AE]-x(2)-[AG]-[GS]-x-[ERS]-x-[FY]-x(2)-[AL]-[EK] Occurences: 8(8) TNA1_SYMTH : 37- 80: ynpff LrSsDVYIDLLTDSGTGAm--SqfQwSaMmlGDEsyAGaSsYyrLK etvtd TNA2_SYMTH : 36- 79: ynpfl LrSsDVYIDLLTDSGTGAm--SqfQwSaMmlGDEsyAGaSsYyrLK eavtd TNAA_ECOLI : 41- 85: mnpfl LdSeDVFIDLLTDSGTGAvtqSm-QaAmMrgDEAysGSrSyYalAE svkni TNAA_PROVU : 39- 82: ynpfl LpSsAVYIDLLTDSGTNAm--SdhQwAaMitGDEayAGsRnYydLK dkake TPL_CITFR : 38- 81: yntfl LnSkDIYIDLLTDSGTNAm--SdkQwAgMmmGDEayAGsEnFyhLE rtvqe TPL_ERWHE : 38- 81: yntfl LnSkDIYIDLLTDSGTNAm--SdkQwAgMmiGDEayAGsEnFyhLE ktvke TPL_ESCIN : 38- 81: yntfl LnSkDIYIDLLTDSGTNAm--SdkQwAgMmmGDEayAGsEnFyhLE rtvqe TPL_SYMTH : 39- 82: yntfl LrSeDVYIDLLTDSGTNAm--SdrQwGaLmmGDEayAGaRsFfrLE eavre L 12: 99.1046 8( 8) S-x-[AD]-[IV]-[FY]-I-D-L-L-T-D-S-G-T-[GN]-A-x(1,3)-S-x(0,2)-Q-x-[AGQS]-x-[LM]-x(2)-[DG]-[DE]-[AE]-x(2)-[AG]-[GS]-x-[ERS]-x-[FY]-x(2)-[AL]-[EK] Occurences: 8(8) TNA1_SYMTH : 39- 80: pfflr SsDVYIDLLTDSGTGAm--SqfQwSaMmlGDEsyAGaSsYyrLK etvtd TNA2_SYMTH : 38- 79: pfllr SsDVYIDLLTDSGTGAm--SqfQwSaMmlGDEsyAGaSsYyrLK eavtd TNAA_ECOLI : 43- 85: pflld SeDVFIDLLTDSGTGAvtqSm-QaAmMrgDEAysGSrSyYalAE svkni TNAA_PROVU : 41- 82: pfllp SsAVYIDLLTDSGTNAm--SdhQwAaMitGDEayAGsRnYydLK dkake TPL_CITFR : 40- 81: tflln SkDIYIDLLTDSGTNAm--SdkQwAgMmmGDEayAGsEnFyhLE rtvqe TPL_ERWHE : 40- 81: tflln SkDIYIDLLTDSGTNAm--SdkQwAgMmiGDEayAGsEnFyhLE ktvke TPL_ESCIN : 40- 81: tflln SkDIYIDLLTDSGTNAm--SdkQwAgMmmGDEayAGsEnFyhLE rtvqe TPL_SYMTH : 41- 82: tfllr SeDVYIDLLTDSGTNAm--SdrQwGaLmmGDEayAGaRsFfrLE eavre M 13: 85.2890 8( 8) I-D-L-L-T-D-S-G-T-[GN]-A-x(1,3)-S-x(0,2)-Q-x-[AGQS]-x-[LM]-x(2)-[DG]-[DE]-[AE]-x(2)-[AG]-[GS]-x-[ERS]-x-[FY]-x(2)-[AL]-[EK] Occurences: 8(8) TNA1_SYMTH : 44- 80: ssdvy IDLLTDSGTGAm--SqfQwSaMmlGDEsyAGaSsYyrLK etvtd TNA2_SYMTH : 43- 79: ssdvy IDLLTDSGTGAm--SqfQwSaMmlGDEsyAGaSsYyrLK eavtd TNAA_ECOLI : 48- 85: sedvf IDLLTDSGTGAvtqSm-QaAmMrgDEAysGSrSyYalAE svkni TNAA_PROVU : 46- 82: ssavy IDLLTDSGTNAm--SdhQwAaMitGDEayAGsRnYydLK dkake TPL_CITFR : 45- 81: skdiy IDLLTDSGTNAm--SdkQwAgMmmGDEayAGsEnFyhLE rtvqe TPL_ERWHE : 45- 81: skdiy IDLLTDSGTNAm--SdkQwAgMmiGDEayAGsEnFyhLE ktvke TPL_ESCIN : 45- 81: skdiy IDLLTDSGTNAm--SdkQwAgMmmGDEayAGsEnFyhLE rtvqe TPL_SYMTH : 46- 82: sedvy IDLLTDSGTNAm--SdrQwGaLmmGDEayAGaRsFfrLE eavre N 14: 81.1190 8( 8) D-L-L-T-D-S-G-T-[GN]-A-x(1,3)-S-x(0,2)-Q-x-[AGQS]-x-[LM]-x(2)-[DG]-[DE]-[AE]-x(2)-[AG]-[GS]-x-[ERS]-x-[FY]-x(2)-[AL]-[EK] Occurences: 8(8) TNA1_SYMTH : 45- 80: sdvyi DLLTDSGTGAm--SqfQwSaMmlGDEsyAGaSsYyrLK etvtd TNA2_SYMTH : 44- 79: sdvyi DLLTDSGTGAm--SqfQwSaMmlGDEsyAGaSsYyrLK eavtd TNAA_ECOLI : 49- 85: edvfi DLLTDSGTGAvtqSm-QaAmMrgDEAysGSrSyYalAE svkni TNAA_PROVU : 47- 82: savyi DLLTDSGTNAm--SdhQwAaMitGDEayAGsRnYydLK dkake TPL_CITFR : 46- 81: kdiyi DLLTDSGTNAm--SdkQwAgMmmGDEayAGsEnFyhLE rtvqe TPL_ERWHE : 46- 81: kdiyi DLLTDSGTNAm--SdkQwAgMmiGDEayAGsEnFyhLE ktvke TPL_ESCIN : 46- 81: kdiyi DLLTDSGTNAm--SdkQwAgMmmGDEayAGsEnFyhLE rtvqe TPL_SYMTH : 47- 82: edvyi DLLTDSGTNAm--SdrQwGaLmmGDEayAGaRsFfrLE eavre O 15: 81.0200 8( 8) N-x-F-[FL]-L-x-S-x-[AD]-[IV]-[FY]-I-D-L-L-T-D-S-G-T-[GN]-A-x(1,3)-S-x(2)-[AQ] Occurences: 8(8) TNA1_SYMTH : 33- 59: keahy NpFFLrSsDVYIDLLTDSGTGAm--SqfQ wsamm TNA2_SYMTH : 32- 58: kaahy NpFLLrSsDVYIDLLTDSGTGAm--SqfQ wsamm TNAA_ECOLI : 37- 65: iksgm NpFLLdSeDVFIDLLTDSGTGAvtqSmqA ammrg TNAA_PROVU : 35- 61: keagy NpFLLpSsAVYIDLLTDSGTNAm--SdhQ waami TPL_CITFR : 34- 60: qeagy NtFLLnSkDIYIDLLTDSGTNAm--SdkQ wagmm TPL_ERWHE : 34- 60: qeagy NtFLLnSkDIYIDLLTDSGTNAm--SdkQ wagmm TPL_ESCIN : 34- 60: qeagy NtFLLnSkDIYIDLLTDSGTNAm--SdkQ wagmm TPL_SYMTH : 35- 61: reagy NtFLLrSeDVYIDLLTDSGTNAm--SdrQ wgalm P 16: 67.6306 8( 8) P-x(0,2)-A-x(3)-A-x(1,3)-Y-x(2)-[AGST]-G-[IV]-R-[AST]-[MV]-E-x-G-x-[FILV]-x(2)-G-R-[DNS]-x(2)-T-G-[EK] Occurences: 8(8) TNA1_SYMTH : 359- 391: pwdqf PghAltlAl--YleGGVRTVEvGsLmiGRDpeTGE nvrgp TNA2_SYMTH : 358- 390: pwdqf PghAltvAl--YqeGGVRTVEvGsLvmGRDpeTGE nvrsp TNAA_ECOLI : 377- 409: padqf P--AqalAcelYkvAGIRAVEiGsFllGRDpkTGK qlpcp TNAA_PROVU : 372- 404: pgdqf PaqAvinAl--YleSGVRAVEiGsFllGRDpaTGE qkhad TPL_CITFR : 362- 394: tqdef P--AqslAasiYveTGVRSMErGiIsaGRNnvTGE hhrpk TPL_ERWHE : 362- 394: tqdqf P--AqslAasiYmeTGVRSMErGiVsaGRSkeTGE nhspk TPL_ESCIN : 362- 394: tqdef P--AqslAasiYveTGVRSMErGiIsaGRNnvTGE hhrpk TPL_SYMTH : 363- 395: pqdqf PaqAlaaAl--YvhSGVRAMErGiVsaGRNpqTGE hnypk TPL_SYMTH : 363- 395: pqdqf P--AqalAaalYvhSGVRAMErGiVsaGRNpqTGE hnypk Q 17: 63.9605 9( 8) A-x(3,4)-A-x(1,3)-Y-x(2)-[AGST]-G-[IV]-R-[AST]-[MV]-E-x-G-x-[FILV]-x(2)-G-R-[DNS]-x(2)-T-G-[EK] Occurences: 9(8) TNA1_SYMTH : 362- 391: qfpgh Altl-Al--YleGGVRTVEvGsLmiGRDpeTGE nvrgp TNA2_SYMTH : 361- 390: qfpgh Altv-Al--YqeGGVRTVEvGsLvmGRDpeTGE nvrsp TNAA_ECOLI : 378- 409: adqfp Aqal-AcelYkvAGIRAVEiGsFllGRDpkTGK qlpcp TNAA_PROVU : 375- 404: qfpaq Avin-Al--YleSGVRAVEiGsFllGRDpaTGE qkhad TPL_CITFR : 363- 394: qdefp AqslaAsi-YveTGVRSMErGiIsaGRNnvTGE hhrpk TPL_CITFR : 363- 394: qdefp Aqsl-AasiYveTGVRSMErGiIsaGRNnvTGE hhrpk TPL_ERWHE : 363- 394: qdqfp AqslaAsi-YmeTGVRSMErGiVsaGRSkeTGE nhspk TPL_ERWHE : 363- 394: qdqfp Aqsl-AasiYmeTGVRSMErGiVsaGRSkeTGE nhspk TPL_ESCIN : 363- 394: qdefp AqslaAsi-YveTGVRSMErGiIsaGRNnvTGE hhrpk TPL_ESCIN : 363- 394: qdefp Aqsl-AasiYveTGVRSMErGiIsaGRNnvTGE hhrpk TPL_SYMTH : 364- 395: qdqfp AqalaAal-YvhSGVRAMErGiVsaGRNpqTGE hnypk TPL_SYMTH : 364- 395: qdqfp Aqal-AaalYvhSGVRAMErGiVsaGRNpqTGE hnypk TPL_SYMTH : 366- 395: qfpaq Alaa-Al--YvhSGVRAMErGiVsaGRNpqTGE hnypk R 18: 63.9605 9( 8) A-x(2,3)-A-x(1,3)-Y-x(2)-[AGST]-G-[IV]-R-[AST]-[MV]-E-x-G-x-[FILV]-x(2)-G-R-[DNS]-x(2)-T-G-[EK] Occurences: 9(8) TNA1_SYMTH : 362- 391: qfpgh AltlAl--YleGGVRTVEvGsLmiGRDpeTGE nvrgp TNA2_SYMTH : 361- 390: qfpgh AltvAl--YqeGGVRTVEvGsLvmGRDpeTGE nvrsp TNAA_ECOLI : 378- 409: adqfp AqalAcelYkvAGIRAVEiGsFllGRDpkTGK qlpcp TNAA_PROVU : 375- 404: qfpaq AvinAl--YleSGVRAVEiGsFllGRDpaTGE qkhad TPL_CITFR : 363- 394: qdefp AqslAasiYveTGVRSMErGiIsaGRNnvTGE hhrpk TPL_ERWHE : 363- 394: qdqfp AqslAasiYmeTGVRSMErGiVsaGRSkeTGE nhspk TPL_ESCIN : 363- 394: qdefp AqslAasiYveTGVRSMErGiIsaGRNnvTGE hhrpk TPL_SYMTH : 364- 395: qdqfp AqalAaalYvhSGVRAMErGiVsaGRNpqTGE hnypk TPL_SYMTH : 366- 395: qfpaq AlaaAl--YvhSGVRAMErGiVsaGRNpqTGE hnypk TPL_SYMTH : 366- 395: qfpaq Ala-Aal-YvhSGVRAMErGiVsaGRNpqTGE hnypk S 19: 58.1004 13( 8) A-x(1,3)-Y-x(3)-G-[IV]-R-[AST]-[MV]-E-x-G-x-[FILV]-x(2)-G-R-[DNS]-x(2)-T-G-[EK] Occurences: 13(8) TNA1_SYMTH : 366- 391: haltl Al--YlegGVRTVEvGsLmiGRDpeTGE nvrgp TNA2_SYMTH : 365- 390: haltv Al--YqegGVRTVEvGsLvmGRDpeTGE nvrsp TNAA_ECOLI : 382- 409: paqal AcelYkvaGIRAVEiGsFllGRDpkTGK qlpcp TNAA_PROVU : 379- 404: qavin Al--YlesGVRAVEiGsFllGRDpaTGE qkhad TPL_CITFR : 367- 394: paqsl AasiYvetGVRSMErGiIsaGRNnvTGE hhrpk TPL_CITFR : 368- 394: aqsla Asi-YvetGVRSMErGiIsaGRNnvTGE hhrpk TPL_ERWHE : 367- 394: paqsl AasiYmetGVRSMErGiVsaGRSkeTGE nhspk TPL_ERWHE : 368- 394: aqsla Asi-YmetGVRSMErGiVsaGRSkeTGE nhspk TPL_ESCIN : 367- 394: paqsl AasiYvetGVRSMErGiIsaGRNnvTGE hhrpk TPL_ESCIN : 368- 394: aqsla Asi-YvetGVRSMErGiIsaGRNnvTGE hhrpk TPL_SYMTH : 368- 395: paqal AaalYvhsGVRAMErGiVsaGRNpqTGE hnypk TPL_SYMTH : 369- 395: aqala Aal-YvhsGVRAMErGiVsaGRNpqTGE hnypk TPL_SYMTH : 370- 395: qalaa Al--YvhsGVRAMErGiVsaGRNpqTGE hnypk T 20: 55.0963 11( 8) S-x(3,4)-I-D-L-L-T-D-S-G-T-[GN]-A-x(1,3)-S-x(2)-[AQ] Occurences: 11(8) TNA1_SYMTH : 39- 59: pfflr SsdvyIDLLTDSGTGAm--SqfQ wsamm TNA1_SYMTH : 40- 59: fflrs Sdvy-IDLLTDSGTGAm--SqfQ wsamm TNA2_SYMTH : 38- 58: pfllr SsdvyIDLLTDSGTGAm--SqfQ wsamm TNA2_SYMTH : 39- 58: fllrs Sdvy-IDLLTDSGTGAm--SqfQ wsamm TNAA_ECOLI : 43- 65: pflld SedvfIDLLTDSGTGAvtqSmqA ammrg TNAA_PROVU : 41- 61: pfllp SsavyIDLLTDSGTNAm--SdhQ waami TNAA_PROVU : 42- 61: fllps Savy-IDLLTDSGTNAm--SdhQ waami TPL_CITFR : 40- 60: tflln SkdiyIDLLTDSGTNAm--SdkQ wagmm TPL_ERWHE : 40- 60: tflln SkdiyIDLLTDSGTNAm--SdkQ wagmm TPL_ESCIN : 40- 60: tflln SkdiyIDLLTDSGTNAm--SdkQ wagmm TPL_SYMTH : 41- 61: tfllr SedvyIDLLTDSGTNAm--SdrQ wgalm Number of patterns evaluated by Pratt:27314 Total running time: 15 seconds