------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file BETA_AMYLASE_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename BETA_AMYLASE_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AMYB_ARATH 498 AMYB_BACCE 544 AMYB_BACCI 575 AMYB_BACPO 1196 AMYB_HORVU 535 AMYB_IPOBA 498 AMYB_SECCE 222 AMYB_SOYBN 495 AMYB_THETU 551 Pratt run started at Thu Feb 6 18:59:07 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.8503 9( 9) F-T-x(2)-E-M-x-D 2: 19.8503 9( 9) G-x(2)-G-E-L-x(0,2)-P 3: 19.8503 9( 9) G-x(3,4)-L-R-x(1,2)-S-x(5)-G 4: 19.8503 9( 9) H-x(2)-E-x(1,2)-A-G-x(0,1)-Y 5: 19.3503 10( 9) G-x(0,1)-G-x(0,2)-G-E-L 6: 19.3503 10( 9) G-x(2)-G-x(0,1)-E-L-x(0,2)-P 7: 19.3503 14( 9) G-x(2,3)-G-E-L-x(0,2)-P 8: 19.3503 10( 9) G-x(0,1)-G-x(0,2)-G-E-x(3)-P 9: 18.8503 11( 9) G-x(0,2)-G-E-L-x(0,2)-P 10: 18.8503 11( 9) G-x(0,2)-G-x(0,2)-G-E-x(3)-P 11: 16.6802 9( 9) G-x-T-x-L-R 12: 16.6802 9( 9) E-N-A-L 13: 16.6802 9( 9) S-x-P-x(2)-L-V 14: 16.6802 9( 9) T-x(2)-E-M-x-D 15: 16.1802 9( 9) G-G-x-V-x(1,2)-D 16: 16.1802 9( 9) G-x(2)-G-E-x(3,4)-P 17: 16.1802 9( 9) G-x(2)-G-x(0,1)-E-x(3)-P 18: 16.1802 12( 9) G-x(3,4)-G-E-x(3)-P 19: 16.1802 9( 9) L-R-x(1,2)-S-x(5)-G 20: 16.1802 9( 9) A-E-x(2,3)-A-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 60.6902 9( 9) S-x-P-x-[ET]-L-V-x(2)-[IV]-x-[NST]-x-[AG]-x(2)-[EK]-x-[ILV]-x(2)-[AN]-[CG]-E-N-A-L-x(3)-[DGN] B 2: 48.5368 9( 9) G-[AIP]-[AGS]-G-x(0,1)-E-[LMV]-[ER]-x-P-[AS]-x(3)-[AGST]-x-[EG]-x(3)-[DP]-x(2)-G-x-[FLM]-x-[ACGV] C 3: 46.4356 10( 9) G-x(0,1)-G-x(0,2)-G-E-[LMV]-[ER]-x-P-[AS]-x(3)-[AGST]-x-[EG]-x(3)-[DP]-x(2)-G-x-[FLM]-x-[ACGV] D 4: 45.9356 11( 9) G-x(0,2)-G-x(0,2)-G-E-[LMV]-[ER]-x-P-[AS]-x(3)-[AGST]-x-[EG]-x(3)-[DP]-x(2)-G-x-[FLM]-x-[ACGV] E 5: 43.2656 10( 9) G-x(3,4)-G-E-[LMV]-[ER]-x-P-[AS]-x(3)-[AGST]-x-[EG]-x(3)-[DP]-x(2)-G-x-[FLM]-x-[ACGV] F 6: 37.7726 9( 9) F-T-[AC]-[AL]-E-M-x-D-x-[DEGN]-[ANQST]-x(2)-[DENQS]-x(3)-[AGPS]-x-[EPQT] G 7: 35.2110 9( 9) G-G-[EN]-V-x(1,2)-D-x-[CNTV]-x-[GIPV]-x-[GILP]-[GPS]-[EQS]-x-[ILPV]-x-[ADNQST] H 8: 34.4160 9( 9) G-x(3,4)-L-R-x(1,2)-S-x(5)-G-x(2)-[FY]-[PV]-x(4)-[FL]-x-[ACDV]-x(2)-[EHK] I 9: 33.6025 9( 9) T-[AC]-[AL]-E-M-x-D-x-[DEGN]-[ANQST]-x(2)-[DENQS]-x(3)-[AGPS]-x-[EPQT] J 10: 33.2666 9( 9) G-[AIP]-[AGS]-G-E-x(3,4)-P-[ST]-x(3)-[AGST]-x-[EG]-x(3)-[AP] K 11: 32.1256 9( 9) G-[FLV]-T-x-L-R-x-[NQS]-[DN]-x-[LMV]-x-[ENQS]-x-[DGNQS] L 12: 30.7460 9( 9) L-R-x(1,2)-S-x(5)-G-x(2)-[FY]-[PV]-x(4)-[FL]-x-[ACDV]-x(2)-[EHK] M 13: 28.2557 9( 9) H-[AGS]-[AT]-E-x(1,2)-A-G-x(0,1)-Y-x-[DNV] N 14: 25.6227 9( 9) G-x-[AGS]-G-E-L-x(0,2)-P-[AS] O 15: 24.7879 9( 9) G-[AGIP]-x-G-x(0,1)-E-L-x(0,2)-P-[AS] P 16: 22.5294 14( 9) G-x(2,3)-G-E-L-x(0,2)-P-[AS] Q 17: 22.0294 11( 9) G-x(0,2)-G-E-L-x(0,2)-P-[AS] R 18: 21.9753 10( 9) G-x(0,1)-G-x(0,2)-G-E-L-x(2)-[APT] S 19: 19.3560 9( 9) E-N-A-L-x(3)-[DGN] T 20: 18.3941 9( 9) A-E-x(2,3)-A-G-x(2)-[DNQS] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 60.6902 9( 9) S-x-P-x-[ET]-L-V-x(2)-[IV]-x-[NST]-x-[AG]-x(2)-[EK]-x-[ILV]-x(2)-[AN]-[CG]-E-N-A-L-x(3)-[DGN] Occurences: 9(9) AMYB_ARATH : 360- 390: taeal SaPqELVqeVlSkAwkEgIevAGENALetyG akgyn AMYB_BACCE : 374- 404: sypey SmPkTLVqnIaTlAneKgIvlNGENALsigN eeeyk AMYB_BACCI : 372- 402: tapny SlPsTLVdtVsSiAnsKgVrlNGENALptgG sgfqk AMYB_BACPO : 371- 401: tapny SlPsTLVdtVsSiAnaKgVrlNGENALptgG sgfqk AMYB_HORVU : 355- 385: ssqam SaPeELVqqVlSaGwrEgLnvACENALpryD ptayn AMYB_IPOBA : 359- 389: paeak SaPqELVqqVlSsGwkEyIdvAGENALpryD atayn AMYB_SECCE : 51- 81: ssqam SaPeELVqqVwSaGwrEgLniACENALpryD ptayn AMYB_SOYBN : 357- 387: psdak SgPqELVqqVlSgGwrEdIrvAGENALpryD atayn AMYB_THETU : 369- 399: vspyy SaPmTLVhyVaNlAnnKgIvhNGENALaisN nnqay B 2: 48.5368 9( 9) G-[AIP]-[AGS]-G-x(0,1)-E-[LMV]-[ER]-x-P-[AS]-x(3)-[AGST]-x-[EG]-x(3)-[DP]-x(2)-G-x-[FLM]-x-[ACGV] Occurences: 9(9) AMYB_ARATH : 185- 211: ievgl GPAG-ELRyPSypqSqGwvfPgiGeFqC ydkyl AMYB_BACCE : 198- 224: iylsg GPAG-ELRyPSyttSdGtgyPsrGkFqA ytefa AMYB_BACCI : 195- 221: iylsg GPSG-ELRyPSyypAaGwsyParGkFqV yteta AMYB_BACPO : 194- 220: iylsg GPSG-ELRyPSyypAaGwsyPgrGkFqA yteta AMYB_HORVU : 180- 206: ievgl GPAG-EMRyPSypqShGwsfPgiGeFiC ydkyl AMYB_IPOBA : 183- 209: ievgc GAAG-ELRyPSypeTqGwvfPgiGeFqC ydkym AMYB_SECCE : 189- 216: vqclg GIGGgEVEcPAggiGgEvqqDptGgMgG elppa AMYB_SOYBN : 182- 208: ievgl GPAG-ELRyPSypqSqGwefPriGeFqC ydkyl AMYB_THETU : 191- 217: iyisg GPSG-ELRyPSynpShGwtyPgrGsLqC yskaa C 3: 46.4356 10( 9) G-x(0,1)-G-x(0,2)-G-E-[LMV]-[ER]-x-P-[AS]-x(3)-[AGST]-x-[EG]-x(3)-[DP]-x(2)-G-x-[FLM]-x-[ACGV] Occurences: 10(9) AMYB_ARATH : 183- 211: vdiev GlGpaGELRyPSypqSqGwvfPgiGeFqC ydkyl AMYB_BACCE : 197- 224: kiyls G-GpaGELRyPSyttSdGtgyPsrGkFqA ytefa AMYB_BACCI : 194- 221: kiyls G-GpsGELRyPSyypAaGwsyParGkFqV yteta AMYB_BACPO : 193- 220: kiyls G-GpsGELRyPSyypAaGwsyPgrGkFqA yteta AMYB_HORVU : 178- 206: vdiev GlGpaGEMRyPSypqShGwsfPgiGeFiC ydkyl AMYB_IPOBA : 181- 209: vdiev GcGaaGELRyPSypeTqGwvfPgiGeFqC ydkym AMYB_SECCE : 189- 216: vqclg GiGg-GEVEcPAggiGgEvqqDptGgMgG elppa AMYB_SECCE : 191- 216: clggi G-G--GEVEcPAggiGgEvqqDptGgMgG elppa AMYB_SOYBN : 180- 208: idiev GlGpaGELRyPSypqSqGwefPriGeFqC ydkyl AMYB_THETU : 190- 217: kiyis G-GpsGELRyPSynpShGwtyPgrGsLqC yskaa D 4: 45.9356 11( 9) G-x(0,2)-G-x(0,2)-G-E-[LMV]-[ER]-x-P-[AS]-x(3)-[AGST]-x-[EG]-x(3)-[DP]-x(2)-G-x-[FLM]-x-[ACGV] Occurences: 11(9) AMYB_ARATH : 183- 211: vdiev Gl-GpaGELRyPSypqSqGwvfPgiGeFqC ydkyl AMYB_BACCE : 197- 224: kiyls G--GpaGELRyPSyttSdGtgyPsrGkFqA ytefa AMYB_BACCI : 194- 221: kiyls G--GpsGELRyPSyypAaGwsyParGkFqV yteta AMYB_BACPO : 193- 220: kiyls G--GpsGELRyPSyypAaGwsyPgrGkFqA yteta AMYB_HORVU : 178- 206: vdiev Gl-GpaGEMRyPSypqShGwsfPgiGeFiC ydkyl AMYB_IPOBA : 181- 209: vdiev Gc-GaaGELRyPSypeTqGwvfPgiGeFqC ydkym AMYB_SECCE : 188- 216: pvqcl GgiGg-GEVEcPAggiGgEvqqDptGgMgG elppa AMYB_SECCE : 189- 216: vqclg GigG--GEVEcPAggiGgEvqqDptGgMgG elppa AMYB_SECCE : 189- 216: vqclg Gi-Gg-GEVEcPAggiGgEvqqDptGgMgG elppa AMYB_SECCE : 191- 216: clggi G--G--GEVEcPAggiGgEvqqDptGgMgG elppa AMYB_SOYBN : 180- 208: idiev Gl-GpaGELRyPSypqSqGwefPriGeFqC ydkyl AMYB_THETU : 190- 217: kiyis G--GpsGELRyPSynpShGwtyPgrGsLqC yskaa E 5: 43.2656 10( 9) G-x(3,4)-G-E-[LMV]-[ER]-x-P-[AS]-x(3)-[AGST]-x-[EG]-x(3)-[DP]-x(2)-G-x-[FLM]-x-[ACGV] Occurences: 10(9) AMYB_ARATH : 183- 211: vdiev GlgpaGELRyPSypqSqGwvfPgiGeFqC ydkyl AMYB_BACCE : 197- 224: kiyls Ggpa-GELRyPSyttSdGtgyPsrGkFqA ytefa AMYB_BACCI : 194- 221: kiyls Ggps-GELRyPSyypAaGwsyParGkFqV yteta AMYB_BACPO : 193- 220: kiyls Ggps-GELRyPSyypAaGwsyPgrGkFqA yteta AMYB_HORVU : 178- 206: vdiev GlgpaGEMRyPSypqShGwsfPgiGeFiC ydkyl AMYB_IPOBA : 181- 209: vdiev GcgaaGELRyPSypeTqGwvfPgiGeFqC ydkym AMYB_SECCE : 188- 216: pvqcl GgiggGEVEcPAggiGgEvqqDptGgMgG elppa AMYB_SECCE : 189- 216: vqclg Gigg-GEVEcPAggiGgEvqqDptGgMgG elppa AMYB_SOYBN : 180- 208: idiev GlgpaGELRyPSypqSqGwefPriGeFqC ydkyl AMYB_THETU : 190- 217: kiyis Ggps-GELRyPSynpShGwtyPgrGsLqC yskaa F 6: 37.7726 9( 9) F-T-[AC]-[AL]-E-M-x-D-x-[DEGN]-[ANQST]-x(2)-[DENQS]-x(3)-[AGPS]-x-[EPQT] Occurences: 9(9) AMYB_ARATH : 344- 363: ygiln FTCLEMkDtDNtaEalsApQ elvqe AMYB_BACCE : 359- 378: kldvt FTCLEMtDkGSypEysmPkT lvqni AMYB_BACCI : 357- 376: dldlt FTALEMyDsGTapNyslPsT lvdtv AMYB_BACPO : 356- 375: dldlt FTCLEMsDsGTapNyslPsT lvdtv AMYB_HORVU : 339- 358: rasin FTCAEMrDlEQssQamsApE elvqq AMYB_IPOBA : 343- 362: hatln FTCLEMrDsEQpaEaksApQ elvqq AMYB_SECCE : 35- 54: hasln FTCAEMrDsEQssQamsApE elvqq AMYB_SOYBN : 341- 360: hailn FTCLEMrDsEQpsDaksGpQ elvqq AMYB_THETU : 352- 371: nlamt FTCLEMdDsNAyvSpyySaP mtlvh G 7: 35.2110 9( 9) G-G-[EN]-V-x(1,2)-D-x-[CNTV]-x-[GIPV]-x-[GILP]-[GPS]-[EQS]-x-[ILPV]-x-[ADNQST] Occurences: 9(9) AMYB_ARATH : 99- 116: sfhqc GGNVg-DiVtIpIPQwVrD vgdnd AMYB_BACCE : 122- 139: sthqc GGNVg-DdCnVpIPSwVwN qksdd AMYB_BACCI : 120- 137: sthrc GGNVg-DdCnIpLPSwLwS kgsad AMYB_BACPO : 119- 136: sthkc GGNVg-DdCnIpLPSwLsS kgsad AMYB_HORVU : 94- 111: sfhqc GGNVg-DaVnIpIPQwVrD vgtrd AMYB_IPOBA : 97- 114: sfhqc GGNVg-DaVfIpIPQwIlQ igdkn AMYB_SECCE : 203- 221: paggi GGEVqqDpTgGmGGElPpA v AMYB_SOYBN : 96- 113: sfhqc GGNVg-DiVnIpIPQwVlD igesn AMYB_THETU : 116- 133: sthac GGNVg-DtVnIpIPSwVwT kdtqd H 8: 34.4160 9( 9) G-x(3,4)-L-R-x(1,2)-S-x(5)-G-x(2)-[FY]-[PV]-x(4)-[FL]-x-[ACDV]-x(2)-[EHK] Occurences: 9(9) AMYB_ARATH : 185- 214: ievgl GpageLRypSypqsqGwvFPgigeFqCydK ylkkd AMYB_BACCE : 198- 227: iylsg GpageLRypSyttsdGtgYPsrgkFqAytE faksk AMYB_BACCI : 195- 224: iylsg GpsgeLRypSyypaaGwsYPargkFqVytE taksa AMYB_BACPO : 194- 223: iylsg GpsgeLRypSyypaaGwsYPgrgkFqAytE takna AMYB_HORVU : 413- 440: ehklf Gfty-LRl-SnqlveGqnYVnfktFvDrmH anlpr AMYB_IPOBA : 183- 212: ievgc GaageLRypSypetqGwvFPgigeFqCydK ymvad AMYB_SECCE : 109- 136: ehklf Gfty-LRl-SnqlleGqnYVnfktFvDrmH anlph AMYB_SOYBN : 182- 211: ievgl GpageLRypSypqsqGweFPrigeFqCydK ylkad AMYB_THETU : 191- 220: iyisg GpsgeLRypSynpshGwtYPgrgsLqCysK aaits I 9: 33.6025 9( 9) T-[AC]-[AL]-E-M-x-D-x-[DEGN]-[ANQST]-x(2)-[DENQS]-x(3)-[AGPS]-x-[EPQT] Occurences: 9(9) AMYB_ARATH : 345- 363: gilnf TCLEMkDtDNtaEalsApQ elvqe AMYB_BACCE : 360- 378: ldvtf TCLEMtDkGSypEysmPkT lvqni AMYB_BACCI : 358- 376: ldltf TALEMyDsGTapNyslPsT lvdtv AMYB_BACPO : 357- 375: ldltf TCLEMsDsGTapNyslPsT lvdtv AMYB_HORVU : 340- 358: asinf TCAEMrDlEQssQamsApE elvqq AMYB_IPOBA : 344- 362: atlnf TCLEMrDsEQpaEaksApQ elvqq AMYB_SECCE : 36- 54: aslnf TCAEMrDsEQssQamsApE elvqq AMYB_SOYBN : 342- 360: ailnf TCLEMrDsEQpsDaksGpQ elvqq AMYB_THETU : 353- 371: lamtf TCLEMdDsNAyvSpyySaP mtlvh J 10: 33.2666 9( 9) G-[AIP]-[AGS]-G-E-x(3,4)-P-[ST]-x(3)-[AGST]-x-[EG]-x(3)-[AP] Occurences: 9(9) AMYB_ARATH : 185- 204: ievgl GPAGElry-PSypqSqGwvfP gigef AMYB_BACCE : 198- 217: iylsg GPAGElry-PSyttSdGtgyP srgkf AMYB_BACCI : 195- 214: iylsg GPSGElry-PSyypAaGwsyP argkf AMYB_BACPO : 194- 213: iylsg GPSGElry-PSyypAaGwsyP grgkf AMYB_HORVU : 180- 199: ievgl GPAGEmry-PSypqShGwsfP gigef AMYB_IPOBA : 183- 202: ievgc GAAGElry-PSypeTqGwvfP gigef AMYB_SECCE : 201- 221: ecpag GIGGEvqqdPTggmGgElppA v AMYB_SOYBN : 182- 201: ievgl GPAGElry-PSypqSqGwefP rigef AMYB_THETU : 191- 210: iyisg GPSGElry-PSynpShGwtyP grgsl K 11: 32.1256 9( 9) G-[FLV]-T-x-L-R-x-[NQS]-[DN]-x-[LMV]-x-[ENQS]-x-[DGNQS] Occurences: 9(9) AMYB_ARATH : 418- 432: klrmy GFTyLRlSDtVfQeN nfelf AMYB_BACCE : 422- 436: nynfs GFTlLRyQDvMyNnS lmgkf AMYB_BACCI : 419- 433: rfgyn GFTlLRiNNiVnSdG sptae AMYB_BACPO : 418- 432: kfgyh GFTlLRiNNlVnNdG sptge AMYB_HORVU : 413- 427: ehklf GFTyLRlSNqLvEgQ nyvnf AMYB_IPOBA : 417- 431: klkms GLTyLRlSDdLlQtD nfelf AMYB_SECCE : 109- 123: ehklf GFTyLRlSNqLlEgQ nyvnf AMYB_SOYBN : 415- 429: klsmf GVTyLRlSDdLlQkS nfnif AMYB_THETU : 418- 432: gynfs GFTlLRlSNiVnSdG svtse L 12: 30.7460 9( 9) L-R-x(1,2)-S-x(5)-G-x(2)-[FY]-[PV]-x(4)-[FL]-x-[ACDV]-x(2)-[EHK] Occurences: 9(9) AMYB_ARATH : 190- 214: gpage LRypSypqsqGwvFPgigeFqCydK ylkkd AMYB_BACCE : 203- 227: gpage LRypSyttsdGtgYPsrgkFqAytE faksk AMYB_BACCI : 200- 224: gpsge LRypSyypaaGwsYPargkFqVytE taksa AMYB_BACPO : 199- 223: gpsge LRypSyypaaGwsYPgrgkFqAytE takna AMYB_HORVU : 417- 440: fgfty LRl-SnqlveGqnYVnfktFvDrmH anlpr AMYB_IPOBA : 188- 212: gaage LRypSypetqGwvFPgigeFqCydK ymvad AMYB_SECCE : 113- 136: fgfty LRl-SnqlleGqnYVnfktFvDrmH anlph AMYB_SOYBN : 187- 211: gpage LRypSypqsqGweFPrigeFqCydK ylkad AMYB_THETU : 196- 220: gpsge LRypSynpshGwtYPgrgsLqCysK aaits M 13: 28.2557 9( 9) H-[AGS]-[AT]-E-x(1,2)-A-G-x(0,1)-Y-x-[DNV] Occurences: 9(9) AMYB_ARATH : 311- 321: ynhhs HAAEltAG-YyN lfkrd AMYB_BACCE : 332- 342: nptip HGAEkpAG-YnD yshll AMYB_BACCI : 330- 340: npsmp HSAEh-AGgYyD ynrli AMYB_BACPO : 329- 339: npamp HGTEq-AGgYyD ynrli AMYB_HORVU : 306- 316: ykvps HAAEltAG-YyN lhdrd AMYB_IPOBA : 310- 321: ynhvs HAAEltAGfYnV agrdg AMYB_SECCE : 2- 12: s HAAEvtAG-YyN lhdrd AMYB_SOYBN : 308- 318: ykven HAAEltAG-YyN lndrd AMYB_THETU : 325- 335: sptmp HAAEycAG-YyN ystll N 14: 25.6227 9( 9) G-x-[AGS]-G-E-L-x(0,2)-P-[AS] Occurences: 9(9) AMYB_ARATH : 185- 194: ievgl GpAGELryPS ypqsq AMYB_BACCE : 198- 207: iylsg GpAGELryPS yttsd AMYB_BACCI : 195- 204: iylsg GpSGELryPS yypaa AMYB_BACPO : 194- 203: iylsg GpSGELryPS yypaa AMYB_HORVU : 526- 533: edpts GiGGEL--PA tm AMYB_IPOBA : 183- 192: ievgc GaAGELryPS ypetq AMYB_SECCE : 213- 221: qdptg GmGGELp-PA v AMYB_SOYBN : 182- 191: ievgl GpAGELryPS ypqsq AMYB_THETU : 191- 200: iyisg GpSGELryPS ynpsh O 15: 24.7879 9( 9) G-[AGIP]-x-G-x(0,1)-E-L-x(0,2)-P-[AS] Occurences: 9(9) AMYB_ARATH : 185- 194: ievgl GPaG-ELryPS ypqsq AMYB_BACCE : 198- 207: iylsg GPaG-ELryPS yttsd AMYB_BACCI : 195- 204: iylsg GPsG-ELryPS yypaa AMYB_BACPO : 194- 203: iylsg GPsG-ELryPS yypaa AMYB_HORVU : 526- 533: edpts GIgG-EL--PA tm AMYB_IPOBA : 183- 192: ievgc GAaG-ELryPS ypetq AMYB_SECCE : 212- 221: qqdpt GGmGgELp-PA v AMYB_SOYBN : 182- 191: ievgl GPaG-ELryPS ypqsq AMYB_THETU : 191- 200: iyisg GPsG-ELryPS ynpsh P 16: 22.5294 14( 9) G-x(2,3)-G-E-L-x(0,2)-P-[AS] Occurences: 14(9) AMYB_ARATH : 185- 194: ievgl Gpa-GELryPS ypqsq AMYB_BACCE : 197- 207: kiyls GgpaGELryPS yttsd AMYB_BACCE : 198- 207: iylsg Gpa-GELryPS yttsd AMYB_BACCI : 194- 204: kiyls GgpsGELryPS yypaa AMYB_BACCI : 195- 204: iylsg Gps-GELryPS yypaa AMYB_BACPO : 193- 203: kiyls GgpsGELryPS yypaa AMYB_BACPO : 194- 203: iylsg Gps-GELryPS yypaa AMYB_HORVU : 526- 533: edpts Gig-GEL--PA tm AMYB_IPOBA : 183- 192: ievgc Gaa-GELryPS ypetq AMYB_SECCE : 212- 221: qqdpt GgmgGELp-PA v AMYB_SECCE : 213- 221: qdptg Gmg-GELp-PA v AMYB_SOYBN : 182- 191: ievgl Gpa-GELryPS ypqsq AMYB_THETU : 190- 200: kiyis GgpsGELryPS ynpsh AMYB_THETU : 191- 200: iyisg Gps-GELryPS ynpsh Q 17: 22.0294 11( 9) G-x(0,2)-G-E-L-x(0,2)-P-[AS] Occurences: 11(9) AMYB_ARATH : 185- 194: ievgl GpaGELryPS ypqsq AMYB_BACCE : 198- 207: iylsg GpaGELryPS yttsd AMYB_BACCI : 195- 204: iylsg GpsGELryPS yypaa AMYB_BACPO : 194- 203: iylsg GpsGELryPS yypaa AMYB_HORVU : 526- 533: edpts GigGEL--PA tm AMYB_HORVU : 528- 533: ptsgi G--GEL--PA tm AMYB_IPOBA : 183- 192: ievgc GaaGELryPS ypetq AMYB_SECCE : 213- 221: qdptg GmgGELp-PA v AMYB_SECCE : 215- 221: ptggm G--GELp-PA v AMYB_SOYBN : 182- 191: ievgl GpaGELryPS ypqsq AMYB_THETU : 191- 200: iyisg GpsGELryPS ynpsh R 18: 21.9753 10( 9) G-x(0,1)-G-x(0,2)-G-E-L-x(2)-[APT] Occurences: 10(9) AMYB_ARATH : 183- 193: vdiev GlGpaGELryP sypqs AMYB_BACCE : 197- 206: kiyls G-GpaGELryP sytts AMYB_BACCI : 194- 203: kiyls G-GpsGELryP syypa AMYB_BACPO : 193- 202: kiyls G-GpsGELryP syypa AMYB_HORVU : 526- 534: edpts GiG--GELpaT m AMYB_IPOBA : 181- 191: vdiev GcGaaGELryP sypet AMYB_SECCE : 212- 221: qqdpt G-GmgGELppA v AMYB_SECCE : 213- 221: qdptg GmG--GELppA v AMYB_SOYBN : 180- 190: idiev GlGpaGELryP sypqs AMYB_THETU : 190- 199: kiyis G-GpsGELryP synps S 19: 19.3560 9( 9) E-N-A-L-x(3)-[DGN] Occurences: 9(9) AMYB_ARATH : 383- 390: ievag ENALetyG akgyn AMYB_BACCE : 397- 404: ivlng ENALsigN eeeyk AMYB_BACCI : 395- 402: vrlng ENALptgG sgfqk AMYB_BACPO : 394- 401: vrlng ENALptgG sgfqk AMYB_HORVU : 378- 385: lnvac ENALpryD ptayn AMYB_IPOBA : 382- 389: idvag ENALpryD atayn AMYB_SECCE : 74- 81: lniac ENALpryD ptayn AMYB_SOYBN : 380- 387: irvag ENALpryD atayn AMYB_THETU : 392- 399: ivhng ENALaisN nnqay T 20: 18.3941 9( 9) A-E-x(2,3)-A-G-x(2)-[DNQS] Occurences: 9(9) AMYB_ARATH : 313- 321: hhsha AElt-AGyyN lfkrd AMYB_BACCE : 334- 342: tiphg AEkp-AGynD yshll AMYB_BACCI : 34- 43: sfgsk AEaavAGdfQ vsvmg AMYB_BACPO : 176- 184: lyasf AEnf-AGykS iipki AMYB_HORVU : 308- 316: vpsha AElt-AGyyN lhdrd AMYB_IPOBA : 312- 320: hvsha AElt-AGfyN vagrd AMYB_SECCE : 4- 12: sha AEvt-AGyyN lhdrd AMYB_SOYBN : 310- 318: venha AElt-AGyyN lndrd AMYB_THETU : 327- 335: tmpha AEyc-AGyyN ystll Number of patterns evaluated by Pratt:6762 Total running time: 7 seconds