------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 17 sequences from file BCL2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 17 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename BCL2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BAXA_HUMAN 192 BAXA_MOUSE 192 BAXB_HUMAN 218 BC2A_HUMAN 239 BC2A_MOUSE 236 BC2B_HUMAN 205 BC2B_MOUSE 199 BCL2_CHICK 233 BCLX_CHICK 190 BCLX_HUMAN 233 CED9_CAEBR 271 CED9_CAEEL 280 EAR_ASFB7 179 EAR_ASFE4 179 EAR_ASFM2 179 HSA1_MOUSE 172 MCL1_HUMAN 350 Pratt run started at Thu Feb 6 18:59:00 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 18( 17) G-x(3,4)-G-x(2)-V 2: 11.5102 22( 17) G-x(3,5)-G-x-I 3: 11.5102 18( 17) I-x(1,3)-G-G 4: 11.5102 31( 17) F-x(1,2)-G-x(0,1)-V 5: 11.5102 18( 17) G-x(1,2)-V-x(2,3)-F 6: 11.5102 26( 17) E-x(0,2)-E-L 7: 11.0102 29( 17) L-x(1,3)-L-x(3,4)-G 8: 11.0102 18( 17) I-x(2,3)-G-x(0,2)-G 9: 11.0102 31( 17) F-x(0,2)-G-x(0,1)-V 10: 10.5102 22( 17) F-x(0,2)-V-x(2,4)-F 11: 10.5102 18( 17) E-x(1,3)-L-x(0,2)-V 12: 10.5102 36( 17) E-x(0,2)-E-x(0,2)-L 13: 8.3401 22( 17) L-F 14: 8.3401 26( 17) M-x(3)-L 15: 8.3401 21( 17) E-x(3)-L 16: 8.3401 35( 17) G-x-I 17: 8.3401 45( 17) L-x(3)-G 18: 8.3401 26( 17) L-x(4)-Q 19: 8.3401 23( 17) E-x(5)-L 20: 8.3401 35( 17) G-x(3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 20.2955 17( 17) G-x(3,4)-G-x-[FIMV]-V-x(4)-[FM]-[AEG] B 2: 12.3557 17( 17) L-x(3)-G-x(3)-[ADEGST]-x(2)-[FLMV] C 3: 12.2486 29( 17) L-x(1,3)-L-x(3,4)-G-x(3)-[ADEGNQST] D 4: 11.5102 22( 17) G-x(3,5)-G-x-I E 5: 11.5102 18( 17) I-x(1,3)-G-G F 6: 11.5102 31( 17) F-x(1,2)-G-x(0,1)-V G 7: 11.5102 18( 17) G-x(1,2)-V-x(2,3)-F H 8: 11.5102 26( 17) E-x(0,2)-E-L I 9: 11.0147 22( 17) G-x(3)-G-x-[AIL] J 10: 11.0102 18( 17) I-x(2,3)-G-x(0,2)-G K 11: 11.0102 31( 17) F-x(0,2)-G-x(0,1)-V L 12: 10.5102 22( 17) F-x(0,2)-V-x(2,4)-F M 13: 10.5102 18( 17) E-x(1,3)-L-x(0,2)-V N 14: 10.5102 36( 17) E-x(0,2)-E-x(0,2)-L O 15: 10.2421 21( 17) G-x-I-x-[ADEGT] P 16: 8.3401 22( 17) L-F Q 17: 8.3401 26( 17) M-x(3)-L R 18: 8.3401 21( 17) E-x(3)-L S 19: 8.3401 26( 17) L-x(4)-Q T 20: 8.3401 23( 17) E-x(5)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 20.2955 17( 17) G-x(3,4)-G-x-[FIMV]-V-x(4)-[FM]-[AEG] Occurences: 17(17) BAXA_HUMAN : 103- 117: dmfsd GnfnwGrVValfyFA sklvl BAXA_MOUSE : 103- 117: dmfad GnfnwGrVValfyFA sklvl BAXB_HUMAN : 103- 117: dmfsd GnfnwGrVValfyFA sklvl BC2A_HUMAN : 141- 154: elfrd Gvnw-GrIVaffeFG gvmcv BC2A_MOUSE : 138- 151: elfrd Gvnw-GrIVaffeFG gvmcv BC2B_HUMAN : 141- 154: elfrd Gvnw-GrIVaffeFG gvmcv BC2B_MOUSE : 138- 151: elfrd Gvnw-GrIVaffeFG gvmcv BCL2_CHICK : 135- 148: elfrd Gvnw-GrIVaffeFG gvmcv BCLX_CHICK : 130- 143: elfhd Gvnw-GrIVaffsFG galcv BCLX_HUMAN : 134- 147: elfrd Gvnw-GrIVaffsFG galcv CED9_CAEBR : 173- 187: ygrli GlisfGgMVaakmME saelq CED9_CAEEL : 173- 187: ygrli GlisfGgFVaakmME svelq EAR_ASFB7 : 85- 98: dlinw Gric-GfIVfsakMA kyckd EAR_ASFE4 : 85- 98: dlinw Gric-GfIVfsarMA kyckd EAR_ASFM2 : 85- 98: dlinw Gric-GfIVfsarMA kyckd HSA1_MOUSE : 82- 96: kefed GiinwGrIVtifaFG gvllk MCL1_HUMAN : 257- 271: hvfsd GvtnwGrIVtlisFG afvak B 2: 12.3557 17( 17) L-x(3)-G-x(3)-[ADEGST]-x(2)-[FLMV] Occurences: 17(17) BAXA_HUMAN : 63- 74: klsec LkriGdelDsnM elqrm BAXA_MOUSE : 63- 74: klsec LrriGdelDsnM elqrm BAXB_HUMAN : 63- 74: klsec LkriGdelDsnM elqrm BC2A_HUMAN : 137- 148: tvvee LfrdGvnwGriV affef BC2A_MOUSE : 134- 145: tvvee LfrdGvnwGriV affef BC2B_HUMAN : 137- 148: tvvee LfrdGvnwGriV affef BC2B_MOUSE : 134- 145: tvvee LfrdGvnwGriV affef BCL2_CHICK : 131- 142: avvee LfrdGvnwGriV affef BCLX_CHICK : 126- 137: qvvne LfhdGvnwGriV affsf BCLX_HUMAN : 130- 141: qvvne LfrdGvnwGriV affsf CED9_CAEBR : 174- 185: grlig LisfGgmvAakM mesae CED9_CAEEL : 174- 185: grlig LisfGgfvAakM mesve EAR_ASFB7 : 81- 92: elfkd LinwGricGfiV fsakm EAR_ASFE4 : 81- 92: elfrd LinwGricGfiV fsarm EAR_ASFM2 : 81- 92: elfkd LinwGricGfiV fsarm HSA1_MOUSE : 158- 169: gwltf LqmtGqiwEmlF llk MCL1_HUMAN : 267- 278: grivt LisfGafvAkhL ktinq C 3: 12.2486 29( 17) L-x(1,3)-L-x(3,4)-G-x(3)-[ADEGNQST] Occurences: 29(17) BAXA_HUMAN : 59- 71: astkk LsecLkri-GdelD snmel BAXA_MOUSE : 59- 71: astkk LsecLrri-GdelD snmel BAXB_HUMAN : 59- 71: astkk LsecLkri-GdelD snmel BC2A_HUMAN : 95- 105: ppvvh Lt--Lrqa-GddfS rryrr BC2A_HUMAN : 220- 231: lslkt Lls-Lalv-GaciT lgayl BC2A_HUMAN : 221- 231: slktl Ls--Lalv-GaciT lgayl BC2A_MOUSE : 72- 84: artsp Lrp-LvataGpalS pvppc BC2A_MOUSE : 92- 102: ppcvh Lt--Lrra-GddfS rryrr BC2A_MOUSE : 217- 228: lslkt Lls-Lalv-GaciT lgayl BC2A_MOUSE : 218- 228: slktl Ls--Lalv-GaciT lgayl BC2B_HUMAN : 95- 105: ppvvh Lt--Lrqa-GddfS rryrr BC2B_MOUSE : 72- 84: artsp Lrp-LvataGpalS pvppc BC2B_MOUSE : 92- 102: ppcvh Lt--Lrra-GddfS rryrr BCL2_CHICK : 89- 99: ppgvh La--Lrqa-GdefS rryqr BCL2_CHICK : 215- 225: slkti Ls--Lvlv-GaciT lgayl BCLX_CHICK : 104- 117: rafsd LtsqLhitpGtayQ sfeqv BCLX_HUMAN : 13- 25: lvvdf LsykLsqk-GyswS qfsdv BCLX_HUMAN : 108- 121: rafsd LtsqLhitpGtayQ sfeqv CED9_CAEBR : 171- 182: msygr Lig-Lisf-GgmvA akmme CED9_CAEBR : 171- 183: msygr Lig-LisfgGmvaA kmmes CED9_CAEEL : 171- 182: msygr Lig-Lisf-GgfvA akmme CED9_CAEEL : 171- 183: msygr Lig-LisfgGfvaA kmmes EAR_ASFB7 : 77- 89: gvvte LfkdLinw-GricG fivfs EAR_ASFE4 : 77- 89: gvvte LfrdLinw-GricG fivfs EAR_ASFM2 : 77- 89: gvvte LfkdLinw-GricG fivfs HSA1_MOUSE : 155- 166: pksgw Ltf-Lqmt-GqiwE mlfll MCL1_HUMAN : 12- 22: navig Ln--Lycg-GaglG agsgg MCL1_HUMAN : 141- 152: krpav Lpl-Lelv-GesgN ntstd MCL1_HUMAN : 141- 152: krpav Lp--LlelvGesgN ntstd MCL1_HUMAN : 143- 155: pavlp Lle-LvgesGnntS tdgsl MCL1_HUMAN : 144- 155: avlpl Le--LvgesGnntS tdgsl MCL1_HUMAN : 210- 221: tsrka Let-Lrrv-GdgvQ rnhet D 4: 11.5102 22( 17) G-x(3,5)-G-x-I Occurences: 22(17) BAXA_HUMAN : 23- 31: qimkt GalllqGfI qdrag BAXA_MOUSE : 23- 31: qimkt GafllqGfI qdrag BAXB_HUMAN : 23- 31: qimkt GalllqGfI qdrag BC2A_HUMAN : 141- 147: elfrd Gvnw--GrI vaffe BC2A_MOUSE : 138- 144: elfrd Gvnw--GrI vaffe BC2B_HUMAN : 141- 147: elfrd Gvnw--GrI vaffe BC2B_MOUSE : 138- 144: elfrd Gvnw--GrI vaffe BCL2_CHICK : 135- 141: elfrd Gvnw--GrI vaffe BCLX_CHICK : 130- 136: elfhd Gvnw--GrI vaffs BCLX_HUMAN : 134- 140: elfrd Gvnw--GrI vaffs CED9_CAEBR : 169- 175: cpmsy Grli--GlI sfggm CED9_CAEEL : 63- 70: rrmsi Gesid-GkI ndwee CED9_CAEEL : 169- 175: cpmsy Grli--GlI sfggf CED9_CAEEL : 256- 264: rwsmi GagvtaGaI givgv CED9_CAEEL : 258- 264: smiga Gvta--GaI givgv EAR_ASFB7 : 85- 91: dlinw Gric--GfI vfsak EAR_ASFE4 : 85- 91: dlinw Gric--GfI vfsar EAR_ASFM2 : 85- 91: dlinw Gric--GfI vfsar HSA1_MOUSE : 82- 89: kefed Giinw-GrI vtifa HSA1_MOUSE : 138- 145: wirqn Ggwed-GfI kkfep HSA1_MOUSE : 139- 145: irqng Gwed--GfI kkfep MCL1_HUMAN : 257- 264: hvfsd Gvtnw-GrI vtlis E 5: 11.5102 18( 17) I-x(1,3)-G-G Occurences: 18(17) BAXA_HUMAN : 152- 157: rllgw IqdqGG wdgll BAXA_MOUSE : 152- 157: rllvw IqdqGG wegll BAXB_HUMAN : 152- 157: rllgw IqdqGG wvrll BC2A_HUMAN : 189- 194: hlhtw IqdnGG wdafv BC2A_MOUSE : 186- 191: hlhtw IqdnGG wdafv BC2B_HUMAN : 189- 194: hlhtw IqdnGG wvgas BC2B_MOUSE : 186- 191: hlhtw IqdnGG wvgac BCL2_CHICK : 183- 188: hlhnw IqdnGG wdafv BCLX_CHICK : 178- 183: hldpw IqenGG wvrta BCLX_HUMAN : 182- 187: hlepw IqenGG wdtfv CED9_CAEBR : 175- 179: rligl Isf-GG mvaak CED9_CAEEL : 175- 179: rligl Isf-GG fvaak EAR_ASFB7 : 129- 133: llpwm Ish-GG qeefl EAR_ASFE4 : 129- 133: llpwm Ish-GG qeefl EAR_ASFM2 : 129- 133: llpwm Ish-GG qeefl HSA1_MOUSE : 92- 97: grivt IfafGG vllkk HSA1_MOUSE : 134- 139: ntgew IrqnGG wedgf MCL1_HUMAN : 48- 51: sarre Ig--GG eagav F 6: 11.5102 31( 17) F-x(1,2)-G-x(0,1)-V Occurences: 31(17) BAXA_HUMAN : 105- 110: fsdgn FnwGrV valfy BAXA_HUMAN : 176- 180: qtvti FvaG-V ltasl BAXA_MOUSE : 105- 110: fadgn FnwGrV valfy BAXA_MOUSE : 176- 180: qtvti FvaG-V ltasl BAXB_HUMAN : 105- 110: fsdgn FnwGrV valfy BC2A_HUMAN : 138- 142: vveel FrdG-V nwgri BC2A_HUMAN : 151- 156: rivaf FefGgV mcves BC2A_HUMAN : 153- 156: vaffe Fg-G-V mcves BC2A_MOUSE : 135- 139: vveel FrdG-V nwgri BC2A_MOUSE : 148- 153: rivaf FefGgV mcves BC2A_MOUSE : 150- 153: vaffe Fg-G-V mcves BC2B_HUMAN : 138- 142: vveel FrdG-V nwgri BC2B_HUMAN : 151- 156: rivaf FefGgV mcves BC2B_HUMAN : 153- 156: vaffe Fg-G-V mcves BC2B_MOUSE : 135- 139: vveel FrdG-V nwgri BC2B_MOUSE : 148- 153: rivaf FefGgV mcves BC2B_MOUSE : 150- 153: vaffe Fg-G-V mcves BCL2_CHICK : 132- 136: vveel FrdG-V nwgri BCL2_CHICK : 145- 150: rivaf FefGgV mcves BCL2_CHICK : 147- 150: vaffe Fg-G-V mcves BCLX_CHICK : 127- 131: vvnel FhdG-V nwgri BCLX_HUMAN : 131- 135: vvnel FrdG-V nwgri CED9_CAEBR : 177- 181: iglis Fg-GmV aakmm CED9_CAEEL : 177- 181: iglis Fg-GfV aakmm EAR_ASFB7 : 70- 73: eiktq Ft-G-V vtelf EAR_ASFB7 : 70- 74: eiktq Ft-GvV telfk EAR_ASFE4 : 70- 73: eiktq Ft-G-V vtelf EAR_ASFE4 : 70- 74: eiktq Ft-GvV telfr EAR_ASFM2 : 70- 73: eiktq Ft-G-V vtelf EAR_ASFM2 : 70- 74: eiktq Ft-GvV telfk HSA1_MOUSE : 93- 98: rivti FafGgV llkkl HSA1_MOUSE : 95- 98: vtifa Fg-G-V llkkl MCL1_HUMAN : 254- 258: vmihv FsdG-V tnwgr MCL1_HUMAN : 335- 338: nvlla Fa-G-V agvga G 7: 11.5102 18( 17) G-x(1,2)-V-x(2,3)-F Occurences: 18(17) BAXA_HUMAN : 108- 114: gnfnw GrvVal-F yfask BAXA_HUMAN : 108- 114: gnfnw Gr-VvalF yfask BAXA_MOUSE : 108- 114: gnfnw GrvVal-F yfask BAXA_MOUSE : 108- 114: gnfnw Gr-VvalF yfask BAXB_HUMAN : 108- 114: gnfnw GrvVal-F yfask BAXB_HUMAN : 108- 114: gnfnw Gr-VvalF yfask BC2A_HUMAN : 145- 151: dgvnw GriVaf-F efggv BC2A_MOUSE : 142- 148: dgvnw GriVaf-F efggv BC2B_HUMAN : 145- 151: dgvnw GriVaf-F efggv BC2B_MOUSE : 142- 148: dgvnw GriVaf-F efggv BCL2_CHICK : 139- 145: dgvnw GriVaf-F efggv BCLX_CHICK : 134- 140: dgvnw GriVaf-F sfgga BCLX_HUMAN : 138- 144: dgvnw GriVaf-F sfgga CED9_CAEBR : 82- 88: rfniq GfvVdy-F tyria CED9_CAEBR : 82- 88: rfniq Gf-VvdyF tyria CED9_CAEEL : 82- 88: rldie GfvVdy-F thrir CED9_CAEEL : 82- 88: rldie Gf-VvdyF thrir CED9_CAEEL : 193- 199: svelq Gq-VrnlF vytsl EAR_ASFB7 : 72- 78: ktqft Gv-VtelF kdlin EAR_ASFE4 : 72- 78: ktqft Gv-VtelF rdlin EAR_ASFM2 : 72- 78: ktqft Gv-VtelF kdlin HSA1_MOUSE : 87- 93: giinw GriVti-F afggv MCL1_HUMAN : 314- 319: qrgwd Gf-Vef-F hvedl H 8: 11.5102 26( 17) E-x(0,2)-E-L Occurences: 26(17) BAXA_HUMAN : 41- 45: grmgg EapEL aldpv BAXA_MOUSE : 41- 45: grmag EtpEL tleqp BAXB_HUMAN : 41- 45: grmgg EapEL aldpv BC2A_HUMAN : 135- 137: fatvv E--EL frdgv BC2A_MOUSE : 132- 134: fatvv E--EL frdgv BC2B_HUMAN : 135- 137: fatvv E--EL frdgv BC2B_MOUSE : 132- 134: fatvv E--EL frdgv BCL2_CHICK : 129- 131: fvavv E--EL frdgv BCLX_CHICK : 92- 95: rdagd Ef-EL ryrra BCLX_HUMAN : 96- 99: reagd Ef-EL ryrra CED9_CAEBR : 187- 191: aakmm EsaEL qgqvr CED9_CAEEL : 187- 191: aakmm EsvEL qgqvr EAR_ASFB7 : 2- 6: m EgeEL iyhni EAR_ASFB7 : 4- 6: meg E--EL iyhni EAR_ASFB7 : 29- 32: indis Eh-EL spyqq EAR_ASFE4 : 2- 6: m EgeEL iyhni EAR_ASFE4 : 4- 6: meg E--EL iyhni EAR_ASFE4 : 29- 32: indis Eh-EL spyqq EAR_ASFM2 : 2- 6: m EgeEL iyhni EAR_ASFM2 : 4- 6: meg E--EL iyhni EAR_ASFM2 : 29- 32: mndis Eh-EL spyqq HSA1_MOUSE : 3- 6: ma Es-EL mhihs MCL1_HUMAN : 123- 126: aimsp Ee-EL dgyep MCL1_HUMAN : 124- 126: imspe E--EL dgyep MCL1_HUMAN : 170- 174: ppaee EedEL yrqsl MCL1_HUMAN : 171- 174: paeee Ed-EL yrqsl I 9: 11.0147 22( 17) G-x(3)-G-x-[AIL] Occurences: 22(17) BAXA_HUMAN : 36- 42: iqdra GrmgGeA pelal BAXA_HUMAN : 156- 162: wiqdq GgwdGlL syfgt BAXA_MOUSE : 156- 162: wiqdq GgweGlL syfgt BAXB_HUMAN : 36- 42: iqdra GrmgGeA pelal BC2A_HUMAN : 79- 85: tpaap GaaaGpA lspvp BC2A_HUMAN : 141- 147: elfrd GvnwGrI vaffe BC2A_MOUSE : 138- 144: elfrd GvnwGrI vaffe BC2B_HUMAN : 79- 85: tpaap GaaaGpA lspvp BC2B_HUMAN : 141- 147: elfrd GvnwGrI vaffe BC2B_MOUSE : 138- 144: elfrd GvnwGrI vaffe BCL2_CHICK : 135- 141: elfrd GvnwGrI vaffe BCLX_CHICK : 130- 136: elfhd GvnwGrI vaffs BCLX_HUMAN : 134- 140: elfrd GvnwGrI vaffs CED9_CAEBR : 169- 175: cpmsy GrliGlI sfggm CED9_CAEEL : 169- 175: cpmsy GrliGlI sfggf CED9_CAEEL : 258- 264: smiga GvtaGaI givgv EAR_ASFB7 : 85- 91: dlinw GricGfI vfsak EAR_ASFE4 : 85- 91: dlinw GricGfI vfsar EAR_ASFM2 : 85- 91: dlinw GricGfI vfsar HSA1_MOUSE : 139- 145: irqng GwedGfI kkfep MCL1_HUMAN : 22- 28: ggagl GagsGgA trpgg MCL1_HUMAN : 340- 346: fagva GvgaGlA ylir J 10: 11.0102 18( 17) I-x(2,3)-G-x(0,2)-G Occurences: 18(17) BAXA_HUMAN : 152- 157: rllgw IqdqG--G wdgll BAXA_MOUSE : 152- 157: rllvw IqdqG--G wegll BAXB_HUMAN : 152- 157: rllgw IqdqG--G wvrll BC2A_HUMAN : 189- 194: hlhtw IqdnG--G wdafv BC2A_MOUSE : 186- 191: hlhtw IqdnG--G wdafv BC2B_HUMAN : 189- 194: hlhtw IqdnG--G wvgas BC2B_MOUSE : 186- 191: hlhtw IqdnG--G wvgac BCL2_CHICK : 183- 188: hlhnw IqdnG--G wdafv BCLX_CHICK : 178- 183: hldpw IqenG--G wvrta BCLX_HUMAN : 182- 187: hlepw IqenG--G wdtfv CED9_CAEBR : 175- 179: rligl Isf-G--G mvaak CED9_CAEEL : 175- 179: rligl Isf-G--G fvaak EAR_ASFB7 : 129- 133: llpwm Ish-G--G qeefl EAR_ASFE4 : 129- 133: llpwm Ish-G--G qeefl EAR_ASFM2 : 129- 133: llpwm Ish-G--G qeefl HSA1_MOUSE : 92- 97: grivt IfafG--G vllkk HSA1_MOUSE : 134- 139: ntgew IrqnG--G wedgf MCL1_HUMAN : 48- 54: sarre Igg-GeaG avigg K 11: 11.0102 31( 17) F-x(0,2)-G-x(0,1)-V Occurences: 31(17) BAXA_HUMAN : 105- 110: fsdgn FnwGrV valfy BAXA_HUMAN : 176- 180: qtvti FvaG-V ltasl BAXA_MOUSE : 105- 110: fadgn FnwGrV valfy BAXA_MOUSE : 176- 180: qtvti FvaG-V ltasl BAXB_HUMAN : 105- 110: fsdgn FnwGrV valfy BC2A_HUMAN : 138- 142: vveel FrdG-V nwgri BC2A_HUMAN : 151- 156: rivaf FefGgV mcves BC2A_HUMAN : 153- 156: vaffe Fg-G-V mcves BC2A_HUMAN : 153- 156: vaffe F--GgV mcves BC2A_MOUSE : 135- 139: vveel FrdG-V nwgri BC2A_MOUSE : 148- 153: rivaf FefGgV mcves BC2A_MOUSE : 150- 153: vaffe Fg-G-V mcves BC2A_MOUSE : 150- 153: vaffe F--GgV mcves BC2B_HUMAN : 138- 142: vveel FrdG-V nwgri BC2B_HUMAN : 151- 156: rivaf FefGgV mcves BC2B_HUMAN : 153- 156: vaffe Fg-G-V mcves BC2B_HUMAN : 153- 156: vaffe F--GgV mcves BC2B_MOUSE : 135- 139: vveel FrdG-V nwgri BC2B_MOUSE : 148- 153: rivaf FefGgV mcves BC2B_MOUSE : 150- 153: vaffe Fg-G-V mcves BC2B_MOUSE : 150- 153: vaffe F--GgV mcves BCL2_CHICK : 132- 136: vveel FrdG-V nwgri BCL2_CHICK : 145- 150: rivaf FefGgV mcves BCL2_CHICK : 147- 150: vaffe Fg-G-V mcves BCL2_CHICK : 147- 150: vaffe F--GgV mcves BCLX_CHICK : 127- 131: vvnel FhdG-V nwgri BCLX_HUMAN : 131- 135: vvnel FrdG-V nwgri CED9_CAEBR : 177- 181: iglis Fg-GmV aakmm CED9_CAEEL : 177- 181: iglis Fg-GfV aakmm EAR_ASFB7 : 70- 73: eiktq Ft-G-V vtelf EAR_ASFB7 : 70- 74: eiktq Ft-GvV telfk EAR_ASFE4 : 70- 73: eiktq Ft-G-V vtelf EAR_ASFE4 : 70- 74: eiktq Ft-GvV telfr EAR_ASFM2 : 70- 73: eiktq Ft-G-V vtelf EAR_ASFM2 : 70- 74: eiktq Ft-GvV telfk HSA1_MOUSE : 93- 98: rivti FafGgV llkkl HSA1_MOUSE : 95- 98: vtifa Fg-G-V llkkl HSA1_MOUSE : 95- 98: vtifa F--GgV llkkl MCL1_HUMAN : 254- 258: vmihv FsdG-V tnwgr MCL1_HUMAN : 335- 338: nvlla Fa-G-V agvga L 12: 10.5102 22( 17) F-x(0,2)-V-x(2,4)-F Occurences: 22(17) BAXA_HUMAN : 92- 100: sprev FfrVaadmF sdgnf BAXA_HUMAN : 93- 100: prevf Fr-VaadmF sdgnf BAXA_MOUSE : 92- 100: sprev FfrVaadmF adgnf BAXA_MOUSE : 93- 100: prevf Fr-VaadmF adgnf BAXB_HUMAN : 92- 100: sprev FfrVaadmF sdgnf BAXB_HUMAN : 93- 100: prevf Fr-VaadmF sdgnf BC2A_HUMAN : 130- 138: targr FatVveelF rdgvn BC2A_MOUSE : 127- 135: targr FatVveelF rdgvn BC2B_HUMAN : 130- 138: targr FatVveelF rdgvn BC2B_MOUSE : 127- 135: targr FatVveelF rdgvn BCL2_CHICK : 124- 132: tahgr FvaVveelF rdgvn BCLX_CHICK : 119- 127: tayqs FeqVvnelF hdgvn BCLX_HUMAN : 123- 131: tayqs FeqVvnelF rdgvn CED9_CAEBR : 83- 88: fniqg Fv-Vdy--F tyria CED9_CAEBR : 83- 88: fniqg F--Vvdy-F tyria CED9_CAEEL : 83- 88: ldieg Fv-Vdy--F thrir CED9_CAEEL : 83- 88: ldieg F--Vvdy-F thrir CED9_CAEEL : 199- 205: qvrnl F--VytslF iktri EAR_ASFB7 : 70- 78: eiktq FtgVvtelF kdlin EAR_ASFE4 : 70- 78: eiktq FtgVvtelF rdlin EAR_ASFM2 : 70- 78: eiktq FtgVvtelF kdlin HSA1_MOUSE : 71- 79: tarii FnqVmekeF edgii HSA1_MOUSE : 121- 125: kqvss F--Vae--F imnnt MCL1_HUMAN : 315- 319: rgwdg F--Vef--F hvedl M 13: 10.5102 18( 17) E-x(1,3)-L-x(0,2)-V Occurences: 18(17) BAXA_HUMAN : 44- 50: ggeap Ela-LdpV pqdas BAXA_MOUSE : 146- 150: ldflr Erl-L--V wiqdq BAXA_MOUSE : 146- 150: ldflr Er--Ll-V wiqdq BAXB_HUMAN : 44- 50: ggeap Ela-LdpV pqdas BC2A_HUMAN : 165- 170: esvnr EmspL--V dnial BC2A_MOUSE : 162- 167: esvnr EmspL--V dnial BC2B_HUMAN : 165- 170: esvnr EmspL--V dnial BC2B_MOUSE : 162- 167: esvnr EmspL--V dnial BCL2_CHICK : 159- 164: esvnr EmspL--V dniat BCLX_CHICK : 154- 159: esvdk EmrvL--V grivs BCLX_HUMAN : 158- 163: esvdk EmqvL--V sriaa CED9_CAEBR : 136- 141: fenfs Eql-La-V pkisf CED9_CAEBR : 136- 141: fenfs Eq--LlaV pkisf CED9_CAEEL : 136- 141: fetfc Eql-La-V prisf CED9_CAEEL : 136- 141: fetfc Eq--LlaV prisf EAR_ASFB7 : 14- 17: hniin Ei--L--V gyiky EAR_ASFE4 : 14- 17: hniin Ei--L--V gyiky EAR_ASFM2 : 14- 17: hniin Ei--L--V gyiky HSA1_MOUSE : 14- 20: ihsla Ehy-LqyV lqvpa HSA1_MOUSE : 106- 112: kklpq EqiaLd-V caykq MCL1_HUMAN : 211- 216: srkal Et--LrrV gdgvq N 14: 10.5102 36( 17) E-x(0,2)-E-x(0,2)-L Occurences: 36(17) BAXA_HUMAN : 41- 45: grmgg EapE--L aldpv BAXA_HUMAN : 41- 47: grmgg EapElaL dpvpq BAXA_MOUSE : 41- 45: grmag EtpE--L tleqp BAXA_MOUSE : 41- 47: grmag EtpEltL eqppq BAXB_HUMAN : 41- 45: grmgg EapE--L aldpv BAXB_HUMAN : 41- 47: grmgg EapElaL dpvpq BC2A_HUMAN : 135- 137: fatvv E--E--L frdgv BC2A_MOUSE : 132- 134: fatvv E--E--L frdgv BC2B_HUMAN : 135- 137: fatvv E--E--L frdgv BC2B_MOUSE : 132- 134: fatvv E--E--L frdgv BCL2_CHICK : 129- 131: fvavv E--E--L frdgv BCLX_CHICK : 92- 95: rdagd Ef-E--L ryrra BCLX_HUMAN : 96- 99: reagd Ef-E--L ryrra CED9_CAEBR : 29- 34: tmats EmrEf-L stkda CED9_CAEBR : 187- 191: aakmm EsaE--L qgqvr CED9_CAEEL : 24- 29: tmatg EmkEf-L gikgt CED9_CAEEL : 74- 78: kindw E--EprL diegf CED9_CAEEL : 187- 191: aakmm EsvE--L qgqvr EAR_ASFB7 : 2- 6: m EgeE--L iyhni EAR_ASFB7 : 2- 6: m Eg-Ee-L iyhni EAR_ASFB7 : 4- 6: meg E--E--L iyhni EAR_ASFB7 : 29- 32: indis Eh-E--L spyqq EAR_ASFB7 : 135- 138: shggq E--Ef-L afslh EAR_ASFE4 : 2- 6: m EgeE--L iyhni EAR_ASFE4 : 2- 6: m Eg-Ee-L iyhni EAR_ASFE4 : 4- 6: meg E--E--L iyhni EAR_ASFE4 : 29- 32: indis Eh-E--L spyqq EAR_ASFE4 : 135- 138: shggq E--Ef-L afslh EAR_ASFM2 : 2- 6: m EgeE--L iyhni EAR_ASFM2 : 2- 6: m Eg-Ee-L iyhni EAR_ASFM2 : 4- 6: meg E--E--L iyhni EAR_ASFM2 : 29- 32: mndis Eh-E--L spyqq EAR_ASFM2 : 135- 138: shggq E--Ef-L afslh HSA1_MOUSE : 3- 6: ma Es-E--L mhihs HSA1_MOUSE : 47- 52: fsvqk Ev-EknL ksyld MCL1_HUMAN : 123- 126: aimsp Ee-E--L dgyep MCL1_HUMAN : 123- 126: aimsp E--Ee-L dgyep MCL1_HUMAN : 124- 126: imspe E--E--L dgyep MCL1_HUMAN : 130- 134: eldgy Ep-Ep-L gkrpa MCL1_HUMAN : 168- 174: tpppa EeeEdeL yrqsl MCL1_HUMAN : 169- 174: pppae Ee-EdeL yrqsl MCL1_HUMAN : 170- 174: ppaee EedE--L yrqsl MCL1_HUMAN : 170- 174: ppaee E--EdeL yrqsl MCL1_HUMAN : 171- 174: paeee Ed-E--L yrqsl O 15: 10.2421 21( 17) G-x-I-x-[ADEGT] Occurences: 21(17) BAXA_HUMAN : 29- 33: alllq GfIqD ragrm BAXA_HUMAN : 150- 154: rerll GwIqD qggwd BAXA_MOUSE : 29- 33: afllq GfIqD ragrm BAXB_HUMAN : 29- 33: alllq GfIqD ragrm BAXB_HUMAN : 150- 154: rerll GwIqD qggwv BC2A_HUMAN : 145- 149: dgvnw GrIvA ffefg BC2A_MOUSE : 142- 146: dgvnw GrIvA ffefg BC2B_HUMAN : 145- 149: dgvnw GrIvA ffefg BC2B_MOUSE : 142- 146: dgvnw GrIvA ffefg BCL2_CHICK : 139- 143: dgvnw GrIvA ffefg BCLX_CHICK : 134- 138: dgvnw GrIvA ffsfg BCLX_HUMAN : 138- 142: dgvnw GrIvA ffsfg CED9_CAEBR : 120- 124: mmrsl GtIfE krhme CED9_CAEEL : 68- 72: gesid GkInD weepr CED9_CAEEL : 120- 124: mmrvm GtIfE kkhae EAR_ASFB7 : 85- 89: dlinw GrIcG fivfs EAR_ASFE4 : 85- 89: dlinw GrIcG fivfs EAR_ASFM2 : 85- 89: dlinw GrIcG fivfs HSA1_MOUSE : 87- 91: giinw GrIvT ifafg HSA1_MOUSE : 162- 166: flqmt GqIwE mlfll MCL1_HUMAN : 262- 266: gvtnw GrIvT lisfg P 16: 8.3401 22( 17) L-F Occurences: 22(17) BAXA_HUMAN : 113- 114: grvva LF yfask BAXA_MOUSE : 113- 114: grvva LF yfask BAXB_HUMAN : 113- 114: grvva LF yfask BC2A_HUMAN : 137- 138: tvvee LF rdgvn BC2A_HUMAN : 209- 210: psmrp LF dfswl BC2A_MOUSE : 134- 135: tvvee LF rdgvn BC2A_MOUSE : 206- 207: psmrp LF dfswl BC2B_HUMAN : 137- 138: tvvee LF rdgvn BC2B_MOUSE : 134- 135: tvvee LF rdgvn BCL2_CHICK : 131- 132: avvee LF rdgvn BCL2_CHICK : 203- 204: nsmrp LF dfswi BCLX_CHICK : 126- 127: qvvne LF hdgvn BCLX_HUMAN : 130- 131: qvvne LF rdgvn BCLX_HUMAN : 229- 230: vllgs LF srk CED9_CAEBR : 204- 205: lmyts LF iktri CED9_CAEEL : 198- 199: gqvrn LF vytsl CED9_CAEEL : 204- 205: fvyts LF iktri EAR_ASFB7 : 77- 78: gvvte LF kdlin EAR_ASFE4 : 77- 78: gvvte LF rdlin EAR_ASFM2 : 77- 78: gvvte LF kdlin HSA1_MOUSE : 168- 169: qiwem LF llk MCL1_HUMAN : 97- 98: tparl LF faptr Q 17: 8.3401 26( 17) M-x(3)-L Occurences: 26(17) BAXA_HUMAN : 137- 141: lirti MgwtL dflre BAXA_MOUSE : 137- 141: lirti MgwtL dflre BAXB_HUMAN : 137- 141: lirti MgwtL dflre BC2A_HUMAN : 115- 119: rdfae MssqL hltpf BC2A_HUMAN : 177- 181: nialw MteyL nrhlh BC2A_MOUSE : 112- 116: rdfae MssqL hltpf BC2A_MOUSE : 174- 178: nialw MteyL nrhlh BC2B_HUMAN : 115- 119: rdfae MssqL hltpf BC2B_HUMAN : 177- 181: nialw MteyL nrhlh BC2B_MOUSE : 112- 116: rdfae MssqL hltpf BC2B_MOUSE : 174- 178: nialw MteyL nrhlh BCL2_CHICK : 109- 113: rdfaq MsgqL hltpf BCL2_CHICK : 171- 175: niatw MteyL nrhlh BCLX_CHICK : 43- 47: aaeae MdsvL ngsps BCLX_CHICK : 166- 170: rivsw MttyL tdhld BCLX_HUMAN : 170- 174: riaaw MatyL ndhle CED9_CAEBR : 30- 34: matse MrefL stkda CED9_CAEBR : 115- 119: qkehe MmrsL gtife CED9_CAEBR : 200- 204: vrnll MytsL fiktr CED9_CAEEL : 25- 29: matge MkefL gikgt CED9_CAEEL : 275- 279: vvcgr MmfsL k EAR_ASFB7 : 120- 124: taynf MkhnL lpwmi EAR_ASFE4 : 120- 124: taynf MkhnL lpwmi EAR_ASFM2 : 120- 124: taynf MkhnL lpwmi HSA1_MOUSE : 167- 171: gqiwe MlflL k MCL1_HUMAN : 231- 235: tvfqg MlrkL dikne R 18: 8.3401 21( 17) E-x(3)-L Occurences: 21(17) BAXA_HUMAN : 41- 45: grmgg EapeL aldpv BAXA_MOUSE : 41- 45: grmag EtpeL tleqp BAXB_HUMAN : 41- 45: grmgg EapeL aldpv BC2A_HUMAN : 165- 169: esvnr EmspL vdnia BC2A_MOUSE : 162- 166: esvnr EmspL vdnia BC2B_HUMAN : 165- 169: esvnr EmspL vdnia BC2B_MOUSE : 162- 166: esvnr EmspL vdnia BCL2_CHICK : 159- 163: esvnr EmspL vdnia BCLX_CHICK : 154- 158: esvdk EmrvL vgriv BCLX_HUMAN : 158- 162: esvdk EmqvL vsria CED9_CAEBR : 187- 191: aakmm EsaeL qgqvr CED9_CAEBR : 243- 247: ekdae EgkrL kswsi CED9_CAEEL : 74- 78: kindw EeprL diegf CED9_CAEEL : 187- 191: aakmm EsveL qgqvr EAR_ASFB7 : 2- 6: m EgeeL iyhni EAR_ASFE4 : 2- 6: m EgeeL iyhni EAR_ASFM2 : 2- 6: m EgeeL iyhni HSA1_MOUSE : 106- 110: kklpq EqiaL dvcay HSA1_MOUSE : 166- 170: tgqiw EmlfL lk MCL1_HUMAN : 130- 134: eldgy EpepL gkrpa MCL1_HUMAN : 170- 174: ppaee EedeL yrqsl S 19: 8.3401 26( 17) L-x(4)-Q Occurences: 26(17) BAXA_HUMAN : 27- 32: tgall LqgfiQ dragr BAXA_HUMAN : 47- 52: apela LdpvpQ dastk BAXA_HUMAN : 148- 153: flrer LlgwiQ dqggw BAXA_MOUSE : 27- 32: tgafl LqgfiQ dragr BAXA_MOUSE : 47- 52: tpelt LeqppQ dastk BAXA_MOUSE : 148- 153: flrer LlvwiQ dqggw BAXB_HUMAN : 27- 32: tgall LqgfiQ dragr BAXB_HUMAN : 47- 52: apela LdpvpQ dastk BAXB_HUMAN : 148- 153: flrer LlgwiQ dqggw BC2A_HUMAN : 185- 190: ylnrh LhtwiQ dnggw BC2A_MOUSE : 182- 187: ylnrh LhtwiQ dnggw BC2B_HUMAN : 185- 190: ylnrh LhtwiQ dnggw BC2B_MOUSE : 182- 187: ylnrh LhtwiQ dnggw BCL2_CHICK : 179- 184: ylnrh LhnwiQ dnggw BCLX_CHICK : 174- 179: yltdh LdpwiQ enggw BCLX_HUMAN : 178- 183: ylndh LepwiQ enggw CED9_CAEBR : 105- 110: ydapa LpdgvQ kehem CED9_CAEEL : 105- 110: fgapg LpcgvQ pehem EAR_ASFB7 : 32- 37: isehe LspyqQ qikki EAR_ASFE4 : 32- 37: isehe LspyqQ qikki EAR_ASFM2 : 32- 37: isehe LspyqQ qikki EAR_ASFM2 : 166- 171: cnhmf LrscvQ llrnc HSA1_MOUSE : 17- 22: laehy LqyvlQ vpafe HSA1_MOUSE : 100- 105: fggvl LkklpQ eqial HSA1_MOUSE : 158- 163: gwltf LqmtgQ iweml MCL1_HUMAN : 278- 283: fvakh LktinQ escie T 20: 8.3401 23( 17) E-x(5)-L Occurences: 23(17) BAXA_HUMAN : 41- 47: grmgg EapelaL dpvpq BAXA_MOUSE : 41- 47: grmag EtpeltL eqppq BAXB_HUMAN : 41- 47: grmgg EapelaL dpvpq BC2A_HUMAN : 179- 185: alwmt EylnrhL htwiq BC2A_MOUSE : 176- 182: alwmt EylnrhL htwiq BC2B_HUMAN : 179- 185: alwmt EylnrhL htwiq BC2B_MOUSE : 176- 182: alwmt EylnrhL htwiq BCL2_CHICK : 173- 179: atwmt EylnrhL hnwiq BCLX_CHICK : 120- 126: ayqsf EqvvneL fhdgv BCLX_HUMAN : 7- 13: sqsnr ElvvdfL sykls BCLX_HUMAN : 124- 130: ayqsf EqvvneL frdgv CED9_CAEBR : 132- 138: hmemf EnfseqL lavpk CED9_CAEEL : 132- 138: haenf EtfceqL lavpr EAR_ASFB7 : 136- 142: hggqe EflafsL hsdmy EAR_ASFE4 : 136- 142: hggqe EflafsL hsdmy EAR_ASFM2 : 136- 142: hggqe EflafsL hsdiy HSA1_MOUSE : 149- 155: fikkf EpksgwL tflqm MCL1_HUMAN : 168- 174: tpppa EeeedeL yrqsl MCL1_HUMAN : 173- 179: eeeed ElyrqsL eiisr MCL1_HUMAN : 180- 186: yrqsl EiisryL reqat MCL1_HUMAN : 240- 246: ldikn EddvksL srvmi MCL1_HUMAN : 284- 290: ktinq EsciepL aesit MCL1_HUMAN : 292- 298: iepla EsitdvL vrtkr Number of patterns evaluated by Pratt:631 Total running time: 1 seconds