------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file BACT_MICROCOMP PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename BACT_MICROCOMP.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CCHA_SALTY 96 CCMK_SYNP7 102 CSOA_THINE 97 CSOB_THINE 110 CSOC_THINE 98 PDUA_SALTY 97 YRB1_SYNP6 122 YRB2_SYNP6 167 YRB2_SYNP7 275 Pratt run started at Thu Feb 6 18:58:48 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 32.3604 10( 9) A-x(3,4)-A-x(0,1)-D-x-M-x-K-x-A-x-V-x-L 2: 24.0203 10( 9) A-x(0,1)-M-x(1,2)-K-x-A-x-V-x-L 3: 24.0203 9( 9) D-x-M-x-K-x(0,1)-A-x(1,2)-V-x-L 4: 19.8503 10( 9) M-x-K-x(0,1)-A-x(1,2)-V-x-L 5: 19.8503 16( 9) A-x(0,1)-D-x-M-x-K-x(0,1)-A 6: 19.8503 10( 9) A-x-G-x(3)-T-x(4,5)-A-x(3,4)-A 7: 16.6802 10( 9) G-x-G-x(2)-T-x(4)-G 8: 16.6802 10( 9) K-x-A-x-V-x-L 9: 16.1802 14( 9) G-x(0,1)-G-x(2)-T-x(4)-G 10: 15.6802 13( 9) A-x(3,4)-A-x(0,1)-D-x(5)-A 11: 15.6802 11( 9) A-x(4,5)-D-x(3,4)-K-x-A 12: 15.6802 14( 9) G-x(0,1)-G-x(2,3)-T-x(4)-G 13: 15.6802 10( 9) K-x(0,1)-A-x(1,2)-V-x-L 14: 15.6802 11( 9) A-x(1,2)-E-A-x(2,3)-A 15: 15.6802 13( 9) G-x(2,3)-A-x(3,4)-A-x(2)-A 16: 15.6802 10( 9) G-x(3)-T-x(1,2)-G-x(2,3)-A 17: 15.1802 10( 9) G-x(3)-A-x(0,2)-R-x(1,2)-G 18: 15.1802 12( 9) A-x(2)-A-x(1,3)-A-x(1,2)-R 19: 15.1802 19( 9) A-x(2)-A-x(1,3)-A-x(0,1)-A 20: 15.1802 15( 9) A-x(2,3)-A-G-x(1,3)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 110.5522 10( 9) A-x(0,1)-M-x(1,2)-K-[AS]-A-[DENR]-V-x-L-[IV]-[CG]-x(4)-G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT] B 2: 105.8133 10( 9) A-x(3,4)-A-x(0,1)-D-x-M-x-K-[AS]-A-[DENR]-V-x-L-[IV]-[CG]-x(4)-G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST] C 3: 105.8092 10( 9) K-[AS]-A-[DENR]-V-x-L-[IV]-[CG]-x(4)-G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT]-x(2)-[ASV] D 4: 105.1976 9( 9) D-x-M-x-K-x(0,1)-A-x(1,2)-V-x-L-[IV]-[CG]-x(4)-G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT] E 5: 101.0275 10( 9) M-x-K-x(0,1)-A-x(1,2)-V-x-L-[IV]-[CG]-x(4)-G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT] F 6: 99.4546 10( 9) K-x(0,1)-A-x(1,2)-V-x-L-[IV]-[CG]-x(4)-G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT]-x(2)-[ASV] G 7: 97.9732 10( 9) A-x(4,5)-D-x(3)-K-[AS]-A-[DENR]-V-x-L-[IV]-[CG]-x(4)-G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST] H 8: 80.4148 10( 9) G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT]-x(2)-[ASV]-x(4)-[IP] I 9: 76.7343 14( 9) G-x(0,1)-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT]-x(2)-[ASV]-x(4)-[IP] J 10: 72.9899 14( 9) G-x(0,1)-G-x(2,3)-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT]-x(2)-[ASV]-x(4)-[IP] K 11: 65.3940 16( 9) A-x(0,1)-D-x-M-x-K-x(0,1)-A-[ADEN]-x(3)-[ILV]-[CGV]-x(4)-[GIV]-[GS]-[GS]-x(2)-[CTV]-[ATV]-x-[ILMV]-x(2)-[DEGT]-x-[AGSTV]-[ADGNS]-x(3)-A-x(2)-[ADS]-[AG]-x(2)-[ADT]-[ACS] L 12: 31.2031 10( 9) A-[ILV]-G-[LMV]-[IV]-x-T-x(4,5)-A-x(3,4)-A-[ADS] M 13: 29.3812 11( 9) G-x(2,3)-A-x(3,4)-A-x-[DER]-A-x-[ALV]-x-[AST]-[AC]-[ENR] N 14: 26.9345 10( 9) G-x(2)-[EK]-T-x(1,2)-G-x(2,3)-A-[ILV]-x(2)-[AG]-[ADGS] O 15: 23.7031 11( 9) A-x(1,2)-E-A-x(2,3)-A-x(2)-[KR]-x(2)-[ENQR]-x(2)-[ALV] P 16: 21.5274 10( 9) A-x-[DE]-A-x(1,3)-A-x(0,1)-A-[ER] Q 17: 20.4402 15( 9) A-x(2,3)-A-G-x(1,3)-A-x-[EQR]-x(2)-[GQT] R 18: 19.8503 9( 9) D-x-M-x-K-x(0,1)-A-x(1,2)-V S 19: 17.7698 11( 9) A-x-[DER]-A-x(1,3)-A-x(1,2)-R T 20: 17.4023 10( 9) G-x(2)-[ANST]-A-x(0,2)-R-x(1,2)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 110.5522 10( 9) A-x(0,1)-M-x(1,2)-K-[AS]-A-[DENR]-V-x-L-[IV]-[CG]-x(4)-G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT] Occurences: 10(9) CCHA_SALTY : 21- 68: ieasd A-Mv-KAARVkLVGvkqiGGGlCTAMVRGDvAAckAAtDAGaaAAqRIGE lvsvh CCMK_SYNP7 : 22- 69: veaad A-Mv-KAARVtLVGyekiGSGrVTVIVRGDvSEvqASvSAGldSAkRVAG gevls CSOA_THINE : 25- 72: ieaad A-Mt-KAAEVrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGD glvaa CSOB_THINE : 26- 73: ieaad A-Mt-KAAEVrLVGrsfvGGGyVTVMVRGEtGAvnAAvRAGadACeRVGD glvaa CSOC_THINE : 26- 73: ieaad A-Mt-KAAEVrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGD glvaa PDUA_SALTY : 23- 70: ieaad A-Mv-KSANVmLVGyekiGSGlVTVIVRGDvGAvkAAtDAGaaAArNVGE vkavh YRB1_SYNP6 : 32- 81: avvgt AdMmlKSADVtLIGyektGSGfCTAIIRGGyADikLAlEAGvaTArQFET yvsst YRB2_SYNP6 : 29- 76: vgaad A-Ml-KSANVkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyAAeRIGQ lnaim YRB2_SYNP7 : 32- 80: avvgt AdMl-KSADVtLIGyektGSGfCTAIIRGGyADikLAlEAGvaTArQFEQ yvsst YRB2_SYNP7 : 137- 184: vgaad A-Ml-KSANVkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyAAeRIGQ lnaim B 2: 105.8133 10( 9) A-x(3,4)-A-x(0,1)-D-x-M-x-K-[AS]-A-[DENR]-V-x-L-[IV]-[CG]-x(4)-G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST] Occurences: 10(9) CCHA_SALTY : 14- 62: trglv Alie-AsDaMvKAARVkLVGvkqiGGGlCTAMVRGDvAAckAAtDAGaaA aqrig CCMK_SYNP7 : 15- 63: tlgfp AvveaA-DaMvKAARVtLVGyekiGSGrVTVIVRGDvSEvqASvSAGldS akrva CCMK_SYNP7 : 15- 63: tlgfp Avve-AaDaMvKAARVtLVGyekiGSGrVTVIVRGDvSEvqASvSAGldS akrva CSOA_THINE : 19- 66: rglvp Aiea-A-DaMtKAAEVrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadA cervg CSOB_THINE : 20- 67: rglvp Aiea-A-DaMtKAAEVrLVGrsfvGGGyVTVMVRGEtGAvnAAvRAGadA cervg CSOC_THINE : 20- 67: rglvp Aiea-A-DaMtKAAEVrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadA cervg PDUA_SALTY : 16- 64: tkglt AaieaA-DaMvKSANVmLVGyekiGSGlVTVIVRGDvGAvkAAtDAGaaA arnvg PDUA_SALTY : 16- 64: tkglt Aaie-AaDaMvKSANVmLVGyekiGSGlVTVIVRGDvGAvkAAtDAGaaA arnvg PDUA_SALTY : 17- 64: kglta Aiea-A-DaMvKSANVmLVGyekiGSGlVTVIVRGDvGAvkAAtDAGaaA arnvg YRB1_SYNP6 : 27- 75: trsfp AvvgtA-DmMlKSADVtLIGyektGSGfCTAIIRGGyADikLAlEAGvaT arqfe YRB2_SYNP6 : 22- 70: tngfp AlvgaA-DaMlKSANVkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyA aerig YRB2_SYNP6 : 22- 70: tngfp Alvg-AaDaMlKSANVkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyA aerig YRB2_SYNP7 : 130- 178: tngfp AlvgaA-DaMlKSANVkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyA aerig YRB2_SYNP7 : 130- 178: tngfp Alvg-AaDaMlKSANVkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyA aerig C 3: 105.8092 10( 9) K-[AS]-A-[DENR]-V-x-L-[IV]-[CG]-x(4)-G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT]-x(2)-[ASV] Occurences: 10(9) CCHA_SALTY : 24- 71: sdamv KAARVkLVGvkqiGGGlCTAMVRGDvAAckAAtDAGaaAAqRIGElvS vhvip CCMK_SYNP7 : 25- 72: adamv KAARVtLVGyekiGSGrVTVIVRGDvSEvqASvSAGldSAkRVAGgeV lshhi CSOA_THINE : 28- 75: adamt KAAEVrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGDglV aahii CSOB_THINE : 29- 76: adamt KAAEVrLVGrsfvGGGyVTVMVRGEtGAvnAAvRAGadACeRVGDglV aahii CSOC_THINE : 29- 76: adamt KAAEVrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGDglV aahii PDUA_SALTY : 26- 73: adamv KSANVmLVGyekiGSGlVTVIVRGDvGAvkAAtDAGaaAArNVGEvkA vhvip YRB1_SYNP6 : 37- 84: admml KSADVtLIGyektGSGfCTAIIRGGyADikLAlEAGvaTArQFETyvS stilp YRB2_SYNP6 : 32- 79: adaml KSANVkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyAAeRIGQlnA imvip YRB2_SYNP7 : 36- 83: tadml KSADVtLIGyektGSGfCTAIIRGGyADikLAlEAGvaTArQFEQyvS stilp YRB2_SYNP7 : 140- 187: adaml KSANVkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyAAeRIGQlnA imvip D 4: 105.1976 9( 9) D-x-M-x-K-x(0,1)-A-x(1,2)-V-x-L-[IV]-[CG]-x(4)-G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT] Occurences: 9(9) CCHA_SALTY : 20- 68: lieas DaMvKaAr-VkLVGvkqiGGGlCTAMVRGDvAAckAAtDAGaaAAqRIGE lvsvh CCHA_SALTY : 20- 68: lieas DaMvK-AarVkLVGvkqiGGGlCTAMVRGDvAAckAAtDAGaaAAqRIGE lvsvh CCMK_SYNP7 : 21- 69: vveaa DaMvKaAr-VtLVGyekiGSGrVTVIVRGDvSEvqASvSAGldSAkRVAG gevls CCMK_SYNP7 : 21- 69: vveaa DaMvK-AarVtLVGyekiGSGrVTVIVRGDvSEvqASvSAGldSAkRVAG gevls CSOA_THINE : 24- 72: aieaa DaMtKaAe-VrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGD glvaa CSOA_THINE : 24- 72: aieaa DaMtK-AaeVrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGD glvaa CSOB_THINE : 25- 73: aieaa DaMtKaAe-VrLVGrsfvGGGyVTVMVRGEtGAvnAAvRAGadACeRVGD glvaa CSOB_THINE : 25- 73: aieaa DaMtK-AaeVrLVGrsfvGGGyVTVMVRGEtGAvnAAvRAGadACeRVGD glvaa CSOC_THINE : 25- 73: aieaa DaMtKaAe-VrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGD glvaa CSOC_THINE : 25- 73: aieaa DaMtK-AaeVrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGD glvaa PDUA_SALTY : 22- 70: aieaa DaMvKsAn-VmLVGyekiGSGlVTVIVRGDvGAvkAAtDAGaaAArNVGE vkavh YRB1_SYNP6 : 33- 81: vvgta DmMlKsAd-VtLIGyektGSGfCTAIIRGGyADikLAlEAGvaTArQFET yvsst YRB2_SYNP6 : 28- 76: lvgaa DaMlKsAn-VkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyAAeRIGQ lnaim YRB2_SYNP7 : 136- 184: lvgaa DaMlKsAn-VkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyAAeRIGQ lnaim E 5: 101.0275 10( 9) M-x-K-x(0,1)-A-x(1,2)-V-x-L-[IV]-[CG]-x(4)-G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT] Occurences: 10(9) CCHA_SALTY : 22- 68: easda MvKaAr-VkLVGvkqiGGGlCTAMVRGDvAAckAAtDAGaaAAqRIGE lvsvh CCHA_SALTY : 22- 68: easda MvK-AarVkLVGvkqiGGGlCTAMVRGDvAAckAAtDAGaaAAqRIGE lvsvh CCMK_SYNP7 : 23- 69: eaada MvKaAr-VtLVGyekiGSGrVTVIVRGDvSEvqASvSAGldSAkRVAG gevls CCMK_SYNP7 : 23- 69: eaada MvK-AarVtLVGyekiGSGrVTVIVRGDvSEvqASvSAGldSAkRVAG gevls CSOA_THINE : 26- 72: eaada MtKaAe-VrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGD glvaa CSOA_THINE : 26- 72: eaada MtK-AaeVrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGD glvaa CSOB_THINE : 27- 73: eaada MtKaAe-VrLVGrsfvGGGyVTVMVRGEtGAvnAAvRAGadACeRVGD glvaa CSOB_THINE : 27- 73: eaada MtK-AaeVrLVGrsfvGGGyVTVMVRGEtGAvnAAvRAGadACeRVGD glvaa CSOC_THINE : 27- 73: eaada MtKaAe-VrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGD glvaa CSOC_THINE : 27- 73: eaada MtK-AaeVrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGD glvaa PDUA_SALTY : 24- 70: eaada MvKsAn-VmLVGyekiGSGlVTVIVRGDvGAvkAAtDAGaaAArNVGE vkavh YRB1_SYNP6 : 35- 81: gtadm MlKsAd-VtLIGyektGSGfCTAIIRGGyADikLAlEAGvaTArQFET yvsst YRB2_SYNP6 : 30- 76: gaada MlKsAn-VkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyAAeRIGQ lnaim YRB2_SYNP7 : 34- 80: vgtad MlKsAd-VtLIGyektGSGfCTAIIRGGyADikLAlEAGvaTArQFEQ yvsst YRB2_SYNP7 : 138- 184: gaada MlKsAn-VkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyAAeRIGQ lnaim F 6: 99.4546 10( 9) K-x(0,1)-A-x(1,2)-V-x-L-[IV]-[CG]-x(4)-G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT]-x(2)-[ASV] Occurences: 10(9) CCHA_SALTY : 24- 71: sdamv KaAr-VkLVGvkqiGGGlCTAMVRGDvAAckAAtDAGaaAAqRIGElvS vhvip CCHA_SALTY : 24- 71: sdamv K-AarVkLVGvkqiGGGlCTAMVRGDvAAckAAtDAGaaAAqRIGElvS vhvip CCMK_SYNP7 : 25- 72: adamv KaAr-VtLVGyekiGSGrVTVIVRGDvSEvqASvSAGldSAkRVAGgeV lshhi CCMK_SYNP7 : 25- 72: adamv K-AarVtLVGyekiGSGrVTVIVRGDvSEvqASvSAGldSAkRVAGgeV lshhi CSOA_THINE : 28- 75: adamt KaAe-VrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGDglV aahii CSOA_THINE : 28- 75: adamt K-AaeVrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGDglV aahii CSOB_THINE : 29- 76: adamt KaAe-VrLVGrsfvGGGyVTVMVRGEtGAvnAAvRAGadACeRVGDglV aahii CSOB_THINE : 29- 76: adamt K-AaeVrLVGrsfvGGGyVTVMVRGEtGAvnAAvRAGadACeRVGDglV aahii CSOC_THINE : 29- 76: adamt KaAe-VrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGDglV aahii CSOC_THINE : 29- 76: adamt K-AaeVrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadACeRVGDglV aahii PDUA_SALTY : 26- 73: adamv KsAn-VmLVGyekiGSGlVTVIVRGDvGAvkAAtDAGaaAArNVGEvkA vhvip YRB1_SYNP6 : 37- 84: admml KsAd-VtLIGyektGSGfCTAIIRGGyADikLAlEAGvaTArQFETyvS stilp YRB2_SYNP6 : 32- 79: adaml KsAn-VkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyAAeRIGQlnA imvip YRB2_SYNP7 : 36- 83: tadml KsAd-VtLIGyektGSGfCTAIIRGGyADikLAlEAGvaTArQFEQyvS stilp YRB2_SYNP7 : 140- 187: adaml KsAn-VkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyAAeRIGQlnA imvip G 7: 97.9732 10( 9) A-x(4,5)-D-x(3)-K-[AS]-A-[DENR]-V-x-L-[IV]-[CG]-x(4)-G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST] Occurences: 10(9) CCHA_SALTY : 14- 62: trglv AlieasDamvKAARVkLVGvkqiGGGlCTAMVRGDvAAckAAtDAGaaA aqrig CCMK_SYNP7 : 15- 63: tlgfp AvveaaDamvKAARVtLVGyekiGSGrVTVIVRGDvSEvqASvSAGldS akrva CSOA_THINE : 19- 66: rglvp Aieaa-DamtKAAEVrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadA cervg CSOB_THINE : 20- 67: rglvp Aieaa-DamtKAAEVrLVGrsfvGGGyVTVMVRGEtGAvnAAvRAGadA cervg CSOC_THINE : 20- 67: rglvp Aieaa-DamtKAAEVrLVGrqfvGGGyVTVLVRGEtGAvnAAvRAGadA cervg PDUA_SALTY : 16- 64: tkglt AaieaaDamvKSANVmLVGyekiGSGlVTVIVRGDvGAvkAAtDAGaaA arnvg PDUA_SALTY : 17- 64: kglta Aieaa-DamvKSANVmLVGyekiGSGlVTVIVRGDvGAvkAAtDAGaaA arnvg YRB1_SYNP6 : 27- 75: trsfp AvvgtaDmmlKSADVtLIGyektGSGfCTAIIRGGyADikLAlEAGvaT arqfe YRB2_SYNP6 : 22- 70: tngfp AlvgaaDamlKSANVkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyA aerig YRB2_SYNP7 : 130- 178: tngfp AlvgaaDamlKSANVkLICyektGSGlCTAIVQGTvSNvtVAvEAGmyA aerig H 8: 80.4148 10( 9) G-[GS]-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT]-x(2)-[ASV]-x(4)-[IP] Occurences: 10(9) CCHA_SALTY : 37- 76: gvkqi GGGlCTAMVRGDvAAckAAtDAGaaAAqRIGElvSvhviP rphgd CCMK_SYNP7 : 38- 77: gyeki GSGrVTVIVRGDvSEvqASvSAGldSAkRVAGgeVlshhI iarph CSOA_THINE : 41- 80: grqfv GGGyVTVLVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOB_THINE : 42- 81: grsfv GGGyVTVMVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOC_THINE : 42- 81: grqfv GGGyVTVLVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs PDUA_SALTY : 39- 78: gyeki GSGlVTVIVRGDvGAvkAAtDAGaaAArNVGEvkAvhviP rphtd YRB1_SYNP6 : 50- 89: gyekt GSGfCTAIIRGGyADikLAlEAGvaTArQFETyvSstilP rpqgn YRB2_SYNP6 : 45- 84: cyekt GSGlCTAIVQGTvSNvtVAvEAGmyAAeRIGQlnAimviP rpldd YRB2_SYNP7 : 49- 88: gyekt GSGfCTAIIRGGyADikLAlEAGvaTArQFEQyvSstilP rpqgn YRB2_SYNP7 : 153- 192: cyekt GSGlCTAIVQGTvSNvtVAvEAGmyAAeRIGQlnAimviP rpldd I 9: 76.7343 14( 9) G-x(0,1)-G-x-[CV]-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT]-x(2)-[ASV]-x(4)-[IP] Occurences: 14(9) CCHA_SALTY : 37- 76: gvkqi GgGlCTAMVRGDvAAckAAtDAGaaAAqRIGElvSvhviP rphgd CCHA_SALTY : 38- 76: vkqig G-GlCTAMVRGDvAAckAAtDAGaaAAqRIGElvSvhviP rphgd CCMK_SYNP7 : 38- 77: gyeki GsGrVTVIVRGDvSEvqASvSAGldSAkRVAGgeVlshhI iarph CSOA_THINE : 41- 80: grqfv GgGyVTVLVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOA_THINE : 42- 80: rqfvg G-GyVTVLVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOB_THINE : 42- 81: grsfv GgGyVTVMVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOB_THINE : 43- 81: rsfvg G-GyVTVMVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOC_THINE : 42- 81: grqfv GgGyVTVLVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOC_THINE : 43- 81: rqfvg G-GyVTVLVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs PDUA_SALTY : 39- 78: gyeki GsGlVTVIVRGDvGAvkAAtDAGaaAArNVGEvkAvhviP rphtd YRB1_SYNP6 : 50- 89: gyekt GsGfCTAIIRGGyADikLAlEAGvaTArQFETyvSstilP rpqgn YRB2_SYNP6 : 45- 84: cyekt GsGlCTAIVQGTvSNvtVAvEAGmyAAeRIGQlnAimviP rpldd YRB2_SYNP7 : 49- 88: gyekt GsGfCTAIIRGGyADikLAlEAGvaTArQFEQyvSstilP rpqgn YRB2_SYNP7 : 153- 192: cyekt GsGlCTAIVQGTvSNvtVAvEAGmyAAeRIGQlnAimviP rpldd J 10: 72.9899 14( 9) G-x(0,1)-G-x(2,3)-T-[AV]-[ILM]-[IV]-[QR]-G-[DEGT]-x-[AGS]-[ADEN]-x(2)-[ALV]-[AS]-x-[DERS]-A-G-x(2)-[AST]-[AC]-x-[NQR]-[FIV]-[AEG]-[DEGQT]-x(2)-[ASV]-x(4)-[IP] Occurences: 14(9) CCHA_SALTY : 37- 76: gvkqi GgGlc-TAMVRGDvAAckAAtDAGaaAAqRIGElvSvhviP rphgd CCHA_SALTY : 37- 76: gvkqi G-GglcTAMVRGDvAAckAAtDAGaaAAqRIGElvSvhviP rphgd CCHA_SALTY : 38- 76: vkqig G-Glc-TAMVRGDvAAckAAtDAGaaAAqRIGElvSvhviP rphgd CCMK_SYNP7 : 38- 77: gyeki GsGrv-TVIVRGDvSEvqASvSAGldSAkRVAGgeVlshhI iarph CSOA_THINE : 41- 80: grqfv GgGyv-TVLVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOA_THINE : 41- 80: grqfv G-GgyvTVLVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOA_THINE : 42- 80: rqfvg G-Gyv-TVLVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOB_THINE : 42- 81: grsfv GgGyv-TVMVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOB_THINE : 42- 81: grsfv G-GgyvTVMVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOB_THINE : 43- 81: rsfvg G-Gyv-TVMVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOC_THINE : 42- 81: grqfv GgGyv-TVLVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOC_THINE : 42- 81: grqfv G-GgyvTVLVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs CSOC_THINE : 43- 81: rqfvg G-Gyv-TVLVRGEtGAvnAAvRAGadACeRVGDglVaahiI arvhs PDUA_SALTY : 39- 78: gyeki GsGlv-TVIVRGDvGAvkAAtDAGaaAArNVGEvkAvhviP rphtd YRB1_SYNP6 : 50- 89: gyekt GsGfc-TAIIRGGyADikLAlEAGvaTArQFETyvSstilP rpqgn YRB2_SYNP6 : 45- 84: cyekt GsGlc-TAIVQGTvSNvtVAvEAGmyAAeRIGQlnAimviP rpldd YRB2_SYNP7 : 49- 88: gyekt GsGfc-TAIIRGGyADikLAlEAGvaTArQFEQyvSstilP rpqgn YRB2_SYNP7 : 153- 192: cyekt GsGlc-TAIVQGTvSNvtVAvEAGmyAAeRIGQlnAimviP rpldd K 11: 65.3940 16( 9) A-x(0,1)-D-x-M-x-K-x(0,1)-A-[ADEN]-x(3)-[ILV]-[CGV]-x(4)-[GIV]-[GS]-[GS]-x(2)-[CTV]-[ATV]-x-[ILMV]-x(2)-[DEGT]-x-[AGSTV]-[ADGNS]-x(3)-A-x(2)-[ADS]-[AG]-x(2)-[ADT]-[ACS] Occurences: 16(9) CCHA_SALTY : 18- 62: valie AsDaMvK-AArvkLVgvkqIGGglCTaMvrGdVAackAatDAgaAA aqrig CCMK_SYNP7 : 19- 63: pavve AaDaMvK-AArvtLVgyekIGSgrVTvIvrGdVSevqAsvSAglDS akrva CCMK_SYNP7 : 20- 63: avvea A-DaMvK-AArvtLVgyekIGSgrVTvIvrGdVSevqAsvSAglDS akrva CSOA_THINE : 22- 67: vpaie AaDaMtKaAEvrlVGrqfvGGGyvTVlVrgEtGAvnaAvrAGadAC ervgd CSOA_THINE : 23- 67: paiea A-DaMtKaAEvrlVGrqfvGGGyvTVlVrgEtGAvnaAvrAGadAC ervgd CSOB_THINE : 23- 68: vpaie AaDaMtKaAEvrlVGrsfvGGGyvTVmVrgEtGAvnaAvrAGadAC ervgd CSOB_THINE : 24- 68: paiea A-DaMtKaAEvrlVGrsfvGGGyvTVmVrgEtGAvnaAvrAGadAC ervgd CSOC_THINE : 23- 68: vpaie AaDaMtKaAEvrlVGrqfvGGGyvTVlVrgEtGAvnaAvrAGadAC ervgd CSOC_THINE : 24- 68: paiea A-DaMtKaAEvrlVGrqfvGGGyvTVlVrgEtGAvnaAvrAGadAC ervgd PDUA_SALTY : 20- 65: taaie AaDaMvKsANvmlVGyekiGSGlvTViVrgDvGAvkaAtdAGaaAA rnvge PDUA_SALTY : 21- 65: aaiea A-DaMvKsANvmlVGyekiGSGlvTViVrgDvGAvkaAtdAGaaAA rnvge YRB1_SYNP6 : 32- 76: avvgt A-DmMlKsADvtlIGyektGSGfcTAiIrgGyADiklAleAGvaTA rqfet YRB2_SYNP6 : 26- 71: palvg AaDaMlKsANvklICyektGSGlcTAiVqgTvSNvtvAveAGmyAA erigq YRB2_SYNP6 : 27- 71: alvga A-DaMlKsANvklICyektGSGlcTAiVqgTvSNvtvAveAGmyAA erigq YRB2_SYNP7 : 134- 179: palvg AaDaMlKsANvklICyektGSGlcTAiVqgTvSNvtvAveAGmyAA erigq YRB2_SYNP7 : 135- 179: alvga A-DaMlKsANvklICyektGSGlcTAiVqgTvSNvtvAveAGmyAA erigq L 12: 31.2031 10( 9) A-[ILV]-G-[LMV]-[IV]-x-T-x(4,5)-A-x(3,4)-A-[ADS] Occurences: 10(9) CCHA_SALTY : 3- 19: me ALGMIeTrglv-Alie-AS damvk CCMK_SYNP7 : 4- 20: mpi AVGMIeTlgfp-Avve-AA damvk CCMK_SYNP7 : 4- 21: mpi AVGMIeTlgfp-AvveaAD amvka CSOA_THINE : 7- 24: dvtgi ALGMIeTrglvpAiea-AD amtka CSOB_THINE : 8- 25: tthgi ALGMIeTrglvpAiea-AD amtka CSOC_THINE : 8- 25: avtgi ALGMIeTrglvpAiea-AD amtka PDUA_SALTY : 5- 21: mqqe ALGMVeTkglt-Aaie-AA damvk PDUA_SALTY : 5- 22: mqqe ALGMVeTkgltaAiea-AD amvks PDUA_SALTY : 5- 22: mqqe ALGMVeTkglt-AaieaAD amvks YRB1_SYNP6 : 16- 33: prnag ALGVIcTrsfp-AvvgtAD mmlks YRB2_SYNP6 : 11- 27: hqnvg AIGLIeTngfp-Alvg-AA damlk YRB2_SYNP6 : 11- 28: hqnvg AIGLIeTngfp-AlvgaAD amlks YRB2_SYNP7 : 16- 33: prnag ALGVIcTrsfp-AvvgtAD mlksa YRB2_SYNP7 : 119- 135: hqnvg AIGLIeTngfp-Alvg-AA damlk YRB2_SYNP7 : 119- 136: hqnvg AIGLIeTngfp-AlvgaAD amlks M 13: 29.3812 11( 9) G-x(2,3)-A-x(3,4)-A-x-[DER]-A-x-[ALV]-x-[AST]-[AC]-[ENR] Occurences: 11(9) CCHA_SALTY : 11- 27: mietr Glv-Alie-AsDAmVkAAR vklvg CCMK_SYNP7 : 12- 28: mietl Gfp-Avve-AaDAmVkAAR vtlvg CSOA_THINE : 51- 68: tvlvr GetgAvna-AvRAgAdACE rvgdg CSOB_THINE : 52- 69: tvmvr GetgAvna-AvRAgAdACE rvgdg CSOC_THINE : 52- 69: tvlvr GetgAvna-AvRAgAdACE rvgdg PDUA_SALTY : 13- 29: mvetk Glt-Aaie-AaDAmVkSAN vmlvg PDUA_SALTY : 49- 66: tvivr GdvgAvka-AtDAgAaAAR nvgev YRB1_SYNP6 : 60- 77: taiir Ggy-AdiklAlEAgVaTAR qfety YRB2_SYNP6 : 19- 35: lietn Gfp-Alvg-AaDAmLkSAN vklic YRB2_SYNP7 : 59- 76: taiir Ggy-AdiklAlEAgVaTAR qfeqy YRB2_SYNP7 : 127- 143: lietn Gfp-Alvg-AaDAmLkSAN vklic N 14: 26.9345 10( 9) G-x(2)-[EK]-T-x(1,2)-G-x(2,3)-A-[ILV]-x(2)-[AG]-[ADGS] Occurences: 10(9) CCHA_SALTY : 5- 19: meal GmiETr-Glv-ALieAS damvk CCMK_SYNP7 : 6- 20: mpiav GmiETl-Gfp-AVveAA damvk CSOA_THINE : 9- 24: tgial GmiETr-GlvpAIeaAD amtka CSOB_THINE : 10- 25: hgial GmiETr-GlvpAIeaAD amtka CSOC_THINE : 10- 25: tgial GmiETr-GlvpAIeaAD amtka PDUA_SALTY : 7- 22: qqeal GmvETk-GltaAIeaAD amvks YRB1_SYNP6 : 45- 61: dvtli GyeKTgsGfctAIirGG yadik YRB2_SYNP6 : 13- 27: nvgai GliETn-Gfp-ALvgAA damlk YRB2_SYNP7 : 44- 60: dvtli GyeKTgsGfctAIirGG yadik YRB2_SYNP7 : 121- 135: nvgai GliETn-Gfp-ALvgAA damlk O 15: 23.7031 11( 9) A-x(1,2)-E-A-x(2,3)-A-x(2)-[KR]-x(2)-[ENQR]-x(2)-[ALV] Occurences: 11(9) CCHA_SALTY : 14- 30: trglv AliEAsd-AmvKaaRvkL vgvkq CCMK_SYNP7 : 15- 31: tlgfp AvvEAad-AmvKaaRvtL vgyek CSOA_THINE : 19- 34: rglvp Ai-EAad-AmtKaaEvrL vgrqf CSOB_THINE : 20- 35: rglvp Ai-EAad-AmtKaaEvrL vgrsf CSOC_THINE : 20- 35: rglvp Ai-EAad-AmtKaaEvrL vgrqf PDUA_SALTY : 16- 32: tkglt AaiEAad-AmvKsaNvmL vgyek PDUA_SALTY : 17- 32: kglta Ai-EAad-AmvKsaNvmL vgyek YRB1_SYNP6 : 68- 83: adikl Al-EAgv-AtaRqfEtyV sstil YRB2_SYNP6 : 63- 79: snvtv Av-EAgmyAaeRigQlnA imvip YRB2_SYNP7 : 67- 82: adikl Al-EAgv-AtaRqfEqyV sstil YRB2_SYNP7 : 171- 187: snvtv Av-EAgmyAaeRigQlnA imvip P 16: 21.5274 10( 9) A-x-[DE]-A-x(1,3)-A-x(0,1)-A-[ER] Occurences: 10(9) CCHA_SALTY : 18- 27: valie AsDAmvkA-AR vklvg CCMK_SYNP7 : 19- 28: pavve AaDAmvkA-AR vtlvg CSOA_THINE : 22- 31: vpaie AaDAmtkA-AE vrlvg CSOB_THINE : 23- 32: vpaie AaDAmtkA-AE vrlvg CSOC_THINE : 23- 32: vpaie AaDAmtkA-AE vrlvg PDUA_SALTY : 57- 66: gavka AtDAgaaA-AR nvgev PDUA_SALTY : 57- 66: gavka AtDAga-AaAR nvgev YRB1_SYNP6 : 68- 77: adikl AlEAgv-AtAR qfety YRB2_SYNP6 : 63- 72: snvtv AvEAgmyA-AE rigql YRB2_SYNP7 : 67- 76: adikl AlEAgv-AtAR qfeqy YRB2_SYNP7 : 171- 180: snvtv AvEAgmyA-AE rigql Q 17: 20.4402 15( 9) A-x(2,3)-A-G-x(1,3)-A-x-[EQR]-x(2)-[GQT] Occurences: 15(9) CCHA_SALTY : 54- 67: vaack AatdAGaa-AaQriG elvsv CCHA_SALTY : 55- 67: aacka Atd-AGaa-AaQriG elvsv CCMK_SYNP7 : 55- 69: vsevq AsvsAGldsAkRvaG gevls CSOA_THINE : 58- 71: tgavn AavrAGad-AcErvG dglva CSOA_THINE : 59- 71: gavna Avr-AGad-AcErvG dglva CSOB_THINE : 59- 72: tgavn AavrAGad-AcErvG dglva CSOB_THINE : 60- 72: gavna Avr-AGad-AcErvG dglva CSOC_THINE : 59- 72: tgavn AavrAGad-AcErvG dglva CSOC_THINE : 60- 72: gavna Avr-AGad-AcErvG dglva PDUA_SALTY : 56- 69: vgavk AatdAGaa-AaRnvG evkav PDUA_SALTY : 57- 69: gavka Atd-AGaa-AaRnvG evkav YRB1_SYNP6 : 68- 81: adikl Ale-AGvatArQfeT yvsst YRB2_SYNP6 : 63- 75: snvtv Ave-AGmy-AaEriG qlnai YRB2_SYNP6 : 63- 76: snvtv Ave-AGmyaAeRigQ lnaim YRB2_SYNP7 : 67- 80: adikl Ale-AGvatArQfeQ yvsst YRB2_SYNP7 : 171- 183: snvtv Ave-AGmy-AaEriG qlnai YRB2_SYNP7 : 171- 184: snvtv Ave-AGmyaAeRigQ lnaim R 18: 19.8503 9( 9) D-x-M-x-K-x(0,1)-A-x(1,2)-V Occurences: 9(9) CCHA_SALTY : 20- 28: lieas DaMvKaAr-V klvgv CCHA_SALTY : 20- 28: lieas DaMvK-AarV klvgv CCMK_SYNP7 : 21- 29: vveaa DaMvKaAr-V tlvgy CCMK_SYNP7 : 21- 29: vveaa DaMvK-AarV tlvgy CSOA_THINE : 24- 32: aieaa DaMtKaAe-V rlvgr CSOA_THINE : 24- 32: aieaa DaMtK-AaeV rlvgr CSOB_THINE : 25- 33: aieaa DaMtKaAe-V rlvgr CSOB_THINE : 25- 33: aieaa DaMtK-AaeV rlvgr CSOC_THINE : 25- 33: aieaa DaMtKaAe-V rlvgr CSOC_THINE : 25- 33: aieaa DaMtK-AaeV rlvgr PDUA_SALTY : 22- 30: aieaa DaMvKsAn-V mlvgy YRB1_SYNP6 : 33- 41: vvgta DmMlKsAd-V tligy YRB2_SYNP6 : 28- 36: lvgaa DaMlKsAn-V klicy YRB2_SYNP7 : 136- 144: lvgaa DaMlKsAn-V klicy S 19: 17.7698 11( 9) A-x-[DER]-A-x(1,3)-A-x(1,2)-R Occurences: 11(9) CCHA_SALTY : 18- 27: valie AsDAmvkAa-R vklvg CCHA_SALTY : 55- 65: aacka AtDAgaaAaqR igelv CCMK_SYNP7 : 19- 28: pavve AaDAmvkAa-R vtlvg CSOA_THINE : 59- 69: gavna AvRAgadAceR vgdgl CSOB_THINE : 60- 70: gavna AvRAgadAceR vgdgl CSOC_THINE : 60- 70: gavna AvRAgadAceR vgdgl PDUA_SALTY : 57- 66: gavka AtDAgaaAa-R nvgev PDUA_SALTY : 57- 66: gavka AtDAga-AaaR nvgev YRB1_SYNP6 : 68- 77: adikl AlEAgv-AtaR qfety YRB2_SYNP6 : 63- 73: snvtv AvEAgmyAaeR igqln YRB2_SYNP7 : 67- 76: adikl AlEAgv-AtaR qfeqy YRB2_SYNP7 : 171- 181: snvtv AvEAgmyAaeR igqln T 20: 17.4023 10( 9) G-x(2)-[ANST]-A-x(0,2)-R-x(1,2)-G Occurences: 10(9) CCHA_SALTY : 59- 67: aatda GaaAAq-Ri-G elvsv CCMK_SYNP7 : 60- 69: asvsa GldSAk-RvaG gevls CSOA_THINE : 54- 63: vrget GavNAavRa-G adace CSOB_THINE : 55- 64: vrget GavNAavRa-G adace CSOC_THINE : 55- 64: vrget GavNAavRa-G adace PDUA_SALTY : 61- 69: aatda GaaAA--RnvG evkav YRB1_SYNP6 : 52- 61: ektgs GfcTAiiRg-G yadik YRB2_SYNP6 : 67- 75: vavea GmyAAe-Ri-G qlnai YRB2_SYNP7 : 51- 60: ektgs GfcTAiiRg-G yadik YRB2_SYNP7 : 175- 183: vavea GmyAAe-Ri-G qlnai Number of patterns evaluated by Pratt:988 Total running time: 1 seconds