------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file BACTERIOFERRITIN PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename BACTERIOFERRITIN.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BFR_AZOVI 156 BFR_ECOLI 158 BFR_MYCAV 159 BFR_MYCLE 159 BFR_MYCPA 42 BFR_NITWI 50 BFR_SYNY3 54 Pratt run started at Thu Feb 6 18:58:48 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 40.7005 7( 7) M-x-G-x(3)-V-x(2,3)-L-x(3,4)-L-x(3)-L-x-A-x(2)-Q-Y-x(2)-H 2: 36.5305 7( 7) G-x(3)-V-x(2,3)-L-x(3,4)-L-x(3)-L-x-A-x(2)-Q-Y-x(2)-H 3: 33.3604 7( 7) V-x(3)-L-x(3)-L-x(3)-L-x-A-x(2)-Q-Y-x(2)-H 4: 32.3604 7( 7) V-x(2,3)-L-x(3,4)-L-x(3)-L-x-A-x(2)-Q-Y-x(2)-H 5: 25.0203 7( 7) L-x(3)-L-x-A-x(2)-Q-Y-x(2)-H 6: 23.5203 8( 7) L-x(3)-L-x(2)-E-L-x(1,2)-A-x(0,2)-Q 7: 20.8503 7( 7) L-x-A-x(2)-Q-Y-x(2)-H 8: 19.8503 11( 7) L-x(3,4)-L-x(2)-E-L-x(1,2)-A 9: 19.3503 8( 7) L-x(2)-E-L-x(1,2)-A-x(0,2)-Q 10: 16.6802 7( 7) A-x(2)-Q-Y-x(2)-H 11: 15.1802 8( 7) E-L-x(1,2)-A-x(0,2)-Q 12: 12.5102 7( 7) W-G-x(3)-L 13: 12.5102 7( 7) Q-Y-x(2)-H 14: 12.0102 9( 7) E-L-x(0,1)-A 15: 12.0102 15( 7) L-x(2)-E-x(0,1)-L 16: 12.0102 15( 7) L-x(2,3)-L-x(3)-L 17: 12.0102 8( 7) G-x-P-x(4,5)-L 18: 11.5102 7( 7) G-x(3,4)-L-x(0,1)-A 19: 11.5102 19( 7) L-x(1,2)-E-x(0,1)-L 20: 11.5102 7( 7) L-x(1,3)-L-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 84.4171 7( 7) M-x-G-[DK]-x(2)-V-x(2,3)-L-x(3,4)-L-x(2)-[EQ]-L-x-A-x-[DN]-Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L B 2: 80.3540 7( 7) V-[IL]-x(2)-L-x-[EK]-x-L-x(2)-[EQ]-L-x-A-x-[DN]-Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L C 3: 80.2470 7( 7) G-[DK]-x(2)-V-x(2,3)-L-x(3,4)-L-x(2)-[EQ]-L-x-A-x-[DN]-Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L D 4: 72.8560 7( 7) V-x(2,3)-L-x(3,4)-L-x(2)-[EQ]-L-x-A-x-[DN]-Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L E 5: 65.5159 7( 7) L-x(2)-[EQ]-L-x-A-x-[DN]-Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L F 6: 58.1639 7( 7) L-x-A-x-[DN]-Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L G 7: 53.9939 7( 7) A-x-[DN]-Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L H 8: 46.6498 7( 7) Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L I 9: 29.3285 7( 7) L-x-[DEK]-x-L-x(2)-E-L-x(1,2)-A-x(0,2)-Q-x(3)-[HR] J 10: 25.1216 10( 7) L-x(3,4)-L-x(2)-E-L-x(1,2)-A-x-[CDN]-x(3)-[ILP] K 11: 23.0712 7( 7) M-x-G-[DK]-x(2)-V-x(2,3)-L-x(3,4)-L L 12: 22.5272 8( 7) L-x(2)-E-L-x(1,2)-A-x(0,2)-Q-x(3)-[HR] M 13: 21.9498 8( 7) L-x(2,3)-L-x(2)-E-L-x-[AS]-x-[DNQ] N 14: 21.0101 7( 7) G-x-P-x(4,5)-L-x-[EK]-x(4)-[EQ]-x-[ATV] O 15: 19.0387 9( 7) L-x(2)-E-x(0,1)-L-[APTV]-[ANST]-x(2)-[EQT] P 16: 18.9011 7( 7) G-[DK]-x(2)-V-x(2,3)-L-x(3,4)-L Q 17: 18.3572 8( 7) E-L-x(1,2)-A-x(0,2)-Q-x(3)-[HR] R 18: 18.2212 12( 7) L-x(1,2)-E-x(0,1)-L-[AGPTV]-[ANST]-x(2)-[EQT] S 19: 17.4330 7( 7) W-G-[FIL]-x-[DEKR]-L T 20: 15.2121 8( 7) E-L-x(0,1)-A-x(2)-[QT] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 84.4171 7( 7) M-x-G-[DK]-x(2)-V-x(2,3)-L-x(3,4)-L-x(2)-[EQ]-L-x-A-x-[DN]-Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L Occurences: 7(7) BFR_AZOVI : 1- 40: MkGDkiViqhLnki-LgnELiAiNQYFLHaRMyeDWGLeKL gkhey BFR_ECOLI : 1- 40: MkGDtkVinyLnkl-LgnELvAiNQYFLHaRMfkNWGLkRL ndvey BFR_MYCAV : 1- 40: MqGDpeVlrlLneq-LttQLtAiNQYFLHsKMqdNWGFtEL aehtr BFR_MYCAV : 1- 40: MqGDpeVlr-LlneqLttQLtAiNQYFLHsKMqdNWGFtEL aehtr BFR_MYCLE : 1- 40: MqGDpdVlrlLneq-LtsELtAiNQYFLHsKMqeNWGFtEL aertr BFR_MYCLE : 1- 40: MqGDpdVlr-LlneqLtsELtAiNQYFLHsKMqeNWGFtEL aertr BFR_MYCPA : 1- 40: MqGDpeVlrlLneq-LtsELtAiNQYFLHsKMqdNWGFtEL ae BFR_MYCPA : 1- 40: MqGDpeVlr-LlneqLtsELtAiNQYFLHsKMqdNWGFtEL ae BFR_NITWI : 1- 40: MkGDpkVidyLnka-LrhELtAiNQYWLHyRLldNWGIkDL akkwr BFR_SYNY3 : 1- 40: MkGKpaVlaqLhkl-LrgELaArDQYFIHsRMyqDWGLeKL ysrid B 2: 80.3540 7( 7) V-[IL]-x(2)-L-x-[EK]-x-L-x(2)-[EQ]-L-x-A-x-[DN]-Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L Occurences: 7(7) BFR_AZOVI : 7- 40: kgdki VIqhLnKiLgnELiAiNQYFLHaRMyeDWGLeKL gkhey BFR_ECOLI : 7- 40: kgdtk VInyLnKlLgnELvAiNQYFLHaRMfkNWGLkRL ndvey BFR_MYCAV : 7- 40: qgdpe VLrlLnEqLttQLtAiNQYFLHsKMqdNWGFtEL aehtr BFR_MYCLE : 7- 40: qgdpd VLrlLnEqLtsELtAiNQYFLHsKMqeNWGFtEL aertr BFR_MYCPA : 7- 40: qgdpe VLrlLnEqLtsELtAiNQYFLHsKMqdNWGFtEL ae BFR_NITWI : 7- 40: kgdpk VIdyLnKaLrhELtAiNQYWLHyRLldNWGIkDL akkwr BFR_SYNY3 : 7- 40: kgkpa VLaqLhKlLrgELaArDQYFIHsRMyqDWGLeKL ysrid C 3: 80.2470 7( 7) G-[DK]-x(2)-V-x(2,3)-L-x(3,4)-L-x(2)-[EQ]-L-x-A-x-[DN]-Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L Occurences: 7(7) BFR_AZOVI : 3- 40: mk GDkiViqhLnki-LgnELiAiNQYFLHaRMyeDWGLeKL gkhey BFR_ECOLI : 3- 40: mk GDtkVinyLnkl-LgnELvAiNQYFLHaRMfkNWGLkRL ndvey BFR_MYCAV : 3- 40: mq GDpeVlrlLneq-LttQLtAiNQYFLHsKMqdNWGFtEL aehtr BFR_MYCAV : 3- 40: mq GDpeVlr-LlneqLttQLtAiNQYFLHsKMqdNWGFtEL aehtr BFR_MYCLE : 3- 40: mq GDpdVlrlLneq-LtsELtAiNQYFLHsKMqeNWGFtEL aertr BFR_MYCLE : 3- 40: mq GDpdVlr-LlneqLtsELtAiNQYFLHsKMqeNWGFtEL aertr BFR_MYCPA : 3- 40: mq GDpeVlrlLneq-LtsELtAiNQYFLHsKMqdNWGFtEL ae BFR_MYCPA : 3- 40: mq GDpeVlr-LlneqLtsELtAiNQYFLHsKMqdNWGFtEL ae BFR_NITWI : 3- 40: mk GDpkVidyLnka-LrhELtAiNQYWLHyRLldNWGIkDL akkwr BFR_SYNY3 : 3- 40: mk GKpaVlaqLhkl-LrgELaArDQYFIHsRMyqDWGLeKL ysrid D 4: 72.8560 7( 7) V-x(2,3)-L-x(3,4)-L-x(2)-[EQ]-L-x-A-x-[DN]-Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L Occurences: 7(7) BFR_AZOVI : 7- 40: kgdki ViqhLnki-LgnELiAiNQYFLHaRMyeDWGLeKL gkhey BFR_ECOLI : 7- 40: kgdtk VinyLnkl-LgnELvAiNQYFLHaRMfkNWGLkRL ndvey BFR_MYCAV : 7- 40: qgdpe VlrlLneq-LttQLtAiNQYFLHsKMqdNWGFtEL aehtr BFR_MYCAV : 7- 40: qgdpe Vlr-LlneqLttQLtAiNQYFLHsKMqdNWGFtEL aehtr BFR_MYCLE : 7- 40: qgdpd VlrlLneq-LtsELtAiNQYFLHsKMqeNWGFtEL aertr BFR_MYCLE : 7- 40: qgdpd Vlr-LlneqLtsELtAiNQYFLHsKMqeNWGFtEL aertr BFR_MYCPA : 7- 40: qgdpe VlrlLneq-LtsELtAiNQYFLHsKMqdNWGFtEL ae BFR_MYCPA : 7- 40: qgdpe Vlr-LlneqLtsELtAiNQYFLHsKMqdNWGFtEL ae BFR_NITWI : 7- 40: kgdpk VidyLnka-LrhELtAiNQYWLHyRLldNWGIkDL akkwr BFR_SYNY3 : 7- 40: kgkpa VlaqLhkl-LrgELaArDQYFIHsRMyqDWGLeKL ysrid E 5: 65.5159 7( 7) L-x(2)-[EQ]-L-x-A-x-[DN]-Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L Occurences: 7(7) BFR_AZOVI : 15- 40: hlnki LgnELiAiNQYFLHaRMyeDWGLeKL gkhey BFR_ECOLI : 15- 40: ylnkl LgnELvAiNQYFLHaRMfkNWGLkRL ndvey BFR_MYCAV : 15- 40: llneq LttQLtAiNQYFLHsKMqdNWGFtEL aehtr BFR_MYCLE : 15- 40: llneq LtsELtAiNQYFLHsKMqeNWGFtEL aertr BFR_MYCPA : 15- 40: llneq LtsELtAiNQYFLHsKMqdNWGFtEL ae BFR_NITWI : 15- 40: ylnka LrhELtAiNQYWLHyRLldNWGIkDL akkwr BFR_SYNY3 : 15- 40: qlhkl LrgELaArDQYFIHsRMyqDWGLeKL ysrid F 6: 58.1639 7( 7) L-x-A-x-[DN]-Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L Occurences: 7(7) BFR_AZOVI : 19- 40: ilgne LiAiNQYFLHaRMyeDWGLeKL gkhey BFR_ECOLI : 19- 40: llgne LvAiNQYFLHaRMfkNWGLkRL ndvey BFR_MYCAV : 19- 40: qlttq LtAiNQYFLHsKMqdNWGFtEL aehtr BFR_MYCLE : 19- 40: qltse LtAiNQYFLHsKMqeNWGFtEL aertr BFR_MYCPA : 19- 40: qltse LtAiNQYFLHsKMqdNWGFtEL ae BFR_NITWI : 19- 40: alrhe LtAiNQYWLHyRLldNWGIkDL akkwr BFR_SYNY3 : 19- 40: llrge LaArDQYFIHsRMyqDWGLeKL ysrid G 7: 53.9939 7( 7) A-x-[DN]-Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L Occurences: 7(7) BFR_AZOVI : 21- 40: gneli AiNQYFLHaRMyeDWGLeKL gkhey BFR_ECOLI : 21- 40: gnelv AiNQYFLHaRMfkNWGLkRL ndvey BFR_MYCAV : 21- 40: ttqlt AiNQYFLHsKMqdNWGFtEL aehtr BFR_MYCLE : 21- 40: tselt AiNQYFLHsKMqeNWGFtEL aertr BFR_MYCPA : 21- 40: tselt AiNQYFLHsKMqdNWGFtEL ae BFR_NITWI : 21- 40: rhelt AiNQYWLHyRLldNWGIkDL akkwr BFR_SYNY3 : 21- 40: rgela ArDQYFIHsRMyqDWGLeKL ysrid H 8: 46.6498 7( 7) Q-Y-[FW]-[IL]-H-x-[KR]-[LM]-x(2)-[DN]-W-G-[FIL]-x-[DEKR]-L Occurences: 7(7) BFR_AZOVI : 24- 40: liain QYFLHaRMyeDWGLeKL gkhey BFR_ECOLI : 24- 40: lvain QYFLHaRMfkNWGLkRL ndvey BFR_MYCAV : 24- 40: ltain QYFLHsKMqdNWGFtEL aehtr BFR_MYCLE : 24- 40: ltain QYFLHsKMqeNWGFtEL aertr BFR_MYCPA : 24- 40: ltain QYFLHsKMqdNWGFtEL ae BFR_NITWI : 24- 40: ltain QYWLHyRLldNWGIkDL akkwr BFR_SYNY3 : 24- 40: laard QYFIHsRMyqDWGLeKL ysrid I 9: 29.3285 7( 7) L-x-[DEK]-x-L-x(2)-E-L-x(1,2)-A-x(0,2)-Q-x(3)-[HR] Occurences: 7(7) BFR_AZOVI : 11- 28: iviqh LnKiLgnELi-AinQyflH armye BFR_ECOLI : 11- 28: kviny LnKlLgnELv-AinQyflH armfk BFR_MYCAV : 140- 156: etqle LmDkLgvELysA--QcvsR pps BFR_MYCLE : 11- 28: dvlrl LnEqLtsELt-AinQyflH skmqe BFR_MYCPA : 11- 28: evlrl LnEqLtsELt-AinQyflH skmqd BFR_NITWI : 11- 28: kvidy LnKaLrhELt-AinQywlH yrlld BFR_SYNY3 : 11- 28: avlaq LhKlLrgELa-ArdQyfiH srmyq J 10: 25.1216 10( 7) L-x(3,4)-L-x(2)-E-L-x(1,2)-A-x-[CDN]-x(3)-[ILP] Occurences: 10(7) BFR_AZOVI : 11- 27: iviqh Lnki-LgnELi-AiNqyfL harmy BFR_ECOLI : 11- 27: kviny Lnkl-LgnELv-AiNqyfL harmf BFR_MYCAV : 140- 157: etqle Lmdk-LgvELysAqCvsrP ps BFR_MYCLE : 10- 27: pdvlr LlneqLtsELt-AiNqyfL hskmq BFR_MYCLE : 11- 27: dvlrl Lneq-LtsELt-AiNqyfL hskmq BFR_MYCLE : 140- 157: etqla Lmgq-LgeELysAqCvsrP ps BFR_MYCPA : 10- 27: pevlr LlneqLtsELt-AiNqyfL hskmq BFR_MYCPA : 11- 27: evlrl Lneq-LtsELt-AiNqyfL hskmq BFR_NITWI : 11- 27: kvidy Lnka-LrhELt-AiNqywL hyrll BFR_SYNY3 : 11- 27: avlaq Lhkl-LrgELa-ArDqyfI hsrmy K 11: 23.0712 7( 7) M-x-G-[DK]-x(2)-V-x(2,3)-L-x(3,4)-L Occurences: 7(7) BFR_AZOVI : 1- 15: MkGDkiViqhLnki-L gneli BFR_ECOLI : 1- 15: MkGDtkVinyLnkl-L gnelv BFR_MYCAV : 1- 15: MqGDpeVlrlLneq-L ttqlt BFR_MYCAV : 1- 15: MqGDpeVlr-LlneqL ttqlt BFR_MYCLE : 1- 15: MqGDpdVlrlLneq-L tselt BFR_MYCLE : 1- 15: MqGDpdVlr-LlneqL tselt BFR_MYCPA : 1- 15: MqGDpeVlrlLneq-L tselt BFR_MYCPA : 1- 15: MqGDpeVlr-LlneqL tselt BFR_NITWI : 1- 15: MkGDpkVidyLnka-L rhelt BFR_SYNY3 : 1- 15: MkGKpaVlaqLhkl-L rgela L 12: 22.5272 8( 7) L-x(2)-E-L-x(1,2)-A-x(0,2)-Q-x(3)-[HR] Occurences: 8(7) BFR_AZOVI : 15- 28: hlnki LgnELi-AinQyflH armye BFR_ECOLI : 15- 28: ylnkl LgnELv-AinQyflH armfk BFR_MYCAV : 144- 156: elmdk LgvELysA--QcvsR pps BFR_MYCLE : 15- 28: llneq LtsELt-AinQyflH skmqe BFR_MYCLE : 144- 156: almgq LgeELysA--QcvsR pps BFR_MYCPA : 15- 28: llneq LtsELt-AinQyflH skmqd BFR_NITWI : 15- 28: ylnka LrhELt-AinQywlH yrlld BFR_SYNY3 : 15- 28: qlhkl LrgELa-ArdQyfiH srmyq M 13: 21.9498 8( 7) L-x(2,3)-L-x(2)-E-L-x-[AS]-x-[DNQ] Occurences: 8(7) BFR_AZOVI : 11- 23: iviqh LnkiLgnELiAiN qyflh BFR_ECOLI : 11- 23: kviny LnklLgnELvAiN qyflh BFR_MYCAV : 140- 152: etqle LmdkLgvELySaQ cvsrp BFR_MYCLE : 11- 23: dvlrl LneqLtsELtAiN qyflh BFR_MYCLE : 140- 152: etqla LmgqLgeELySaQ cvsrp BFR_MYCPA : 11- 23: evlrl LneqLtsELtAiN qyflh BFR_NITWI : 11- 23: kvidy LnkaLrhELtAiN qywlh BFR_SYNY3 : 11- 23: avlaq LhklLrgELaArD qyfih N 14: 21.0101 7( 7) G-x-P-x(4,5)-L-x-[EK]-x(4)-[EQ]-x-[ATV] Occurences: 7(7) BFR_AZOVI : 67- 83: ilfle GlPnlqe-LgKlligEhT kemle BFR_ECOLI : 67- 83: ilfle GlPnlqd-LgKlnigEdV eemlr BFR_MYCAV : 3- 20: mq GdPevlrlLnEqlttQlT ainqy BFR_MYCLE : 3- 20: mq GdPdvlrlLnEqltsElT ainqy BFR_MYCPA : 3- 20: mq GdPevlrlLnEqltsElT ainqy BFR_NITWI : 3- 20: mk GdPkvidyLnKalrhElT ainqy BFR_SYNY3 : 3- 20: mk GkPavlaqLhKllrgElA ardqy O 15: 19.0387 9( 7) L-x(2)-E-x(0,1)-L-[APTV]-[ANST]-x(2)-[EQT] Occurences: 9(7) BFR_AZOVI : 63- 73: likri LflEgLPNlqE lgkll BFR_ECOLI : 15- 24: ylnkl LgnE-LVAinQ yflha BFR_MYCAV : 10- 20: pevlr LlnEqLTTqlT ainqy BFR_MYCLE : 10- 20: pdvlr LlnEqLTSelT ainqy BFR_MYCLE : 15- 24: llneq LtsE-LTAinQ yflhs BFR_MYCPA : 10- 20: pevlr LlnEqLTSelT ainqy BFR_MYCPA : 15- 24: llneq LtsE-LTAinQ yflhs BFR_NITWI : 15- 24: ylnka LrhE-LTAinQ ywlhy BFR_SYNY3 : 15- 24: qlhkl LrgE-LAArdQ yfihs P 16: 18.9011 7( 7) G-[DK]-x(2)-V-x(2,3)-L-x(3,4)-L Occurences: 7(7) BFR_AZOVI : 3- 15: mk GDkiViqhLnki-L gneli BFR_ECOLI : 3- 15: mk GDtkVinyLnkl-L gnelv BFR_MYCAV : 3- 15: mq GDpeVlrlLneq-L ttqlt BFR_MYCAV : 3- 15: mq GDpeVlr-LlneqL ttqlt BFR_MYCLE : 3- 15: mq GDpdVlrlLneq-L tselt BFR_MYCLE : 3- 15: mq GDpdVlr-LlneqL tselt BFR_MYCPA : 3- 15: mq GDpeVlrlLneq-L tselt BFR_MYCPA : 3- 15: mq GDpeVlr-LlneqL tselt BFR_NITWI : 3- 15: mk GDpkVidyLnka-L rhelt BFR_SYNY3 : 3- 15: mk GKpaVlaqLhkl-L rgela Q 17: 18.3572 8( 7) E-L-x(1,2)-A-x(0,2)-Q-x(3)-[HR] Occurences: 8(7) BFR_AZOVI : 18- 28: kilgn ELi-AinQyflH armye BFR_ECOLI : 18- 28: kllgn ELv-AinQyflH armfk BFR_MYCAV : 147- 156: dklgv ELysA--QcvsR pps BFR_MYCLE : 18- 28: eqlts ELt-AinQyflH skmqe BFR_MYCLE : 147- 156: gqlge ELysA--QcvsR pps BFR_MYCPA : 18- 28: eqlts ELt-AinQyflH skmqd BFR_NITWI : 18- 28: kalrh ELt-AinQywlH yrlld BFR_SYNY3 : 18- 28: kllrg ELa-ArdQyfiH srmyq R 18: 18.2212 12( 7) L-x(1,2)-E-x(0,1)-L-[AGPTV]-[ANST]-x(2)-[EQT] Occurences: 12(7) BFR_AZOVI : 63- 73: likri LflEgLPNlqE lgkll BFR_ECOLI : 15- 24: ylnkl LgnE-LVAinQ yflha BFR_MYCAV : 10- 20: pevlr LlnEqLTTqlT ainqy BFR_MYCAV : 11- 20: evlrl Ln-EqLTTqlT ainqy BFR_MYCLE : 10- 20: pdvlr LlnEqLTSelT ainqy BFR_MYCLE : 11- 20: dvlrl Ln-EqLTSelT ainqy BFR_MYCLE : 15- 24: llneq LtsE-LTAinQ yflhs BFR_MYCPA : 10- 20: pevlr LlnEqLTSelT ainqy BFR_MYCPA : 11- 20: evlrl Ln-EqLTSelT ainqy BFR_MYCPA : 15- 24: llneq LtsE-LTAinQ yflhs BFR_NITWI : 15- 24: ylnka LrhE-LTAinQ ywlhy BFR_SYNY3 : 15- 24: qlhkl LrgE-LAArdQ yfihs S 19: 17.4330 7( 7) W-G-[FIL]-x-[DEKR]-L Occurences: 7(7) BFR_AZOVI : 35- 40: rmyed WGLeKL gkhey BFR_ECOLI : 35- 40: rmfkn WGLkRL ndvey BFR_MYCAV : 35- 40: kmqdn WGFtEL aehtr BFR_MYCLE : 35- 40: kmqen WGFtEL aertr BFR_MYCPA : 35- 40: kmqdn WGFtEL ae BFR_NITWI : 35- 40: rlldn WGIkDL akkwr BFR_SYNY3 : 35- 40: rmyqd WGLeKL ysrid T 20: 15.2121 8( 7) E-L-x(0,1)-A-x(2)-[QT] Occurences: 8(7) BFR_AZOVI : 18- 24: kilgn ELiAinQ yflha BFR_ECOLI : 18- 24: kllgn ELvAinQ yflha BFR_MYCAV : 39- 44: nwgft EL-AehT raesf BFR_MYCLE : 18- 24: eqlts ELtAinQ yflhs BFR_MYCLE : 39- 44: nwgft EL-AerT rvesf BFR_MYCPA : 18- 24: eqlts ELtAinQ yflhs BFR_NITWI : 18- 24: kalrh ELtAinQ ywlhy BFR_SYNY3 : 18- 24: kllrg ELaArdQ yfihs Number of patterns evaluated by Pratt:244 Total running time: 0 seconds