------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file BACTERIAL_PQQ_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename BACTERIAL_PQQ_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DHET_ACEAC 742 DHET_ACEPO 738 DHGA_ACICA 801 DHG_ECOLI 796 DHG_GLUOX 808 DHM1_METEX 626 DHM1_METME 571 DHM1_METOR 626 DHM1_PARDE 631 Pratt run started at Thu Feb 6 18:57:33 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 37.0305 9( 9) G-x(4)-P-x-T-Y-x(3)-G-x-Q-Y-x(5)-G-x(0,1)-G 2: 36.5305 12( 9) G-x(3,4)-P-x-T-Y-x(3)-G-x-Q-Y-x(5)-G-x(0,1)-G 3: 32.8604 9( 9) P-x-T-Y-x(3)-G-x-Q-Y-x(5)-G-x(0,1)-G 4: 28.6904 9( 9) T-Y-x(3)-G-x-Q-Y-x(5)-G-x(0,1)-G 5: 27.1904 9( 9) W-x(4)-Y-D-x(2,4)-L-x(1,3)-Y-x(3)-G-x(3)-P 6: 24.5203 9( 9) Y-x(3)-G-x-Q-Y-x(5)-G-x(0,1)-G 7: 23.0203 9( 9) Y-D-x(2,4)-L-x(1,3)-Y-x(3)-G-x(3)-P 8: 20.8503 11( 9) A-x(4)-T-G-x-L-x-W 9: 20.8503 15( 9) A-x(2)-A-x-T-G-x(3)-W 10: 20.3503 9( 9) G-x-Q-Y-x(5)-G-x(0,1)-G 11: 20.3503 9( 9) A-x-D-x(3)-G-x(3)-W-x(3,4)-P 12: 20.3503 12( 9) I-x(0,1)-A-x(4)-T-G-x(3)-W 13: 19.8503 9( 9) G-x(1,2)-L-x(2)-F-x(3,4)-G-x(4)-P 14: 19.8503 11( 9) G-x(2,3)-A-x(1,2)-D-x-K-x(5)-W 15: 19.8503 9( 9) D-x(3,4)-A-x(5)-G-x(3)-W-x(4,5)-P 16: 19.8503 17( 9) G-x(2,3)-A-x(1,2)-D-x(2)-T-x(4)-W 17: 19.8503 14( 9) D-x(0,2)-T-G-x-L-x-W 18: 19.3503 9( 9) Y-x(1,3)-G-x(2)-Y-x(0,1)-V-x(4)-G 19: 19.3503 9( 9) G-x(2)-L-W-x(3,4)-P-x(1,3)-G 20: 19.3503 9( 9) G-x(2)-G-x(1,2)-E-x-G-x(0,2)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 51.0629 9( 9) G-[AGIV]-x-[AG]-x-P-[IMV]-T-Y-x(3)-G-x-Q-Y-[IV]-[AGV]-x(3)-G-x(0,1)-G B 2: 45.1505 12( 9) G-x(3,4)-P-[IMV]-T-Y-x(3)-G-x-Q-Y-[IV]-[AGV]-x(3)-G-x(0,1)-G C 3: 41.8951 9( 9) D-x(3,4)-A-x-[DN]-x(2)-[DNT]-G-[DEK]-x-[LV]-W-x(4,5)-P-[APS]-[DEG]-[AGV]-x-[AGL] D 4: 41.4805 9( 9) P-[IMV]-T-Y-x(3)-G-x-Q-Y-[IV]-[AGV]-x(3)-G-x(0,1)-G E 5: 40.8554 9( 9) W-x(3)-[ASV]-Y-D-x(2,4)-L-x(1,3)-Y-x-[AGP]-x-G-[NV]-[GPT]-[AST]-P F 6: 37.1781 9( 9) G-[DEK]-x-L-W-x(3,4)-P-x(1,3)-G-x(2)-[AG]-x(3)-[CT]-x(4)-[GN]-x-[GQ]-x-[AGIV] G 7: 34.7944 9( 9) G-[CDNS]-x-G-x(1,2)-E-x-G-x(0,2)-G-x(2)-[NSTV]-[ADN]-x-[DNQ]-x(2)-[STV]-[AG] H 8: 34.5142 9( 9) T-Y-x(3)-G-x-Q-Y-[IV]-[AGV]-x(3)-G-x(0,1)-G I 9: 34.0882 9( 9) Y-D-x(2,4)-L-x(1,3)-Y-x-[AGP]-x-G-[NV]-[GPT]-[AST]-P J 10: 32.3400 9( 9) A-x-D-[AGNPS]-x-[DST]-G-x(3)-W-x(3,4)-P-x-[GLV]-x(2)-[DGN]-x-[AGPS] K 11: 32.0267 10( 9) G-x(2,3)-A-x(1,2)-D-[ALV]-[EK]-T-x(4)-W-x(4)-[CGSTV]-[DGPT]-x(3)-[DGNS] L 12: 31.8708 9( 9) A-[FILMV]-[DN]-A-x-T-G-[EK]-x(2)-W-x(2)-[DEQ] M 13: 30.3442 9( 9) Y-x(3)-G-x-Q-Y-[IV]-[AGV]-x(3)-G-x(0,1)-G N 14: 26.6554 11( 9) A-x-[DN]-x(2)-T-G-[DEK]-L-x-W O 15: 26.1741 9( 9) G-x-Q-Y-[IV]-[AGV]-x(3)-G-x(0,1)-G P 16: 25.6231 10( 9) G-x(2,3)-A-x(1,2)-D-[ALV]-K-[ST]-x(4)-W Q 17: 24.8419 9( 9) Y-x(1,3)-G-x(2)-Y-x(0,1)-V-x(4)-G-x-[GN]-x(3)-[DGPT] R 18: 22.9746 11( 9) I-x(0,1)-A-x(2)-[ALP]-x-T-G-x(3)-W S 19: 22.4815 14( 9) D-x(0,2)-T-G-[DEK]-L-x-W T 20: 22.4493 9( 9) G-x(1,2)-L-x(2)-F-x(3,4)-G-x(2)-[AGV]-x-P Best patterns with alignements: fitness hits(seqs) Pattern A 1: 51.0629 9( 9) G-[AGIV]-x-[AG]-x-P-[IMV]-T-Y-x(3)-G-x-Q-Y-[IV]-[AGV]-x(3)-G-x(0,1)-G Occurences: 9(9) DHET_ACEAC : 559- 582: fdaqs GIiApPMTYsvnGkQYVAvevGwG giypi DHET_ACEPO : 559- 582: faads GIiApPVTYlanGkQYVAvevGwG giypf DHGA_ACICA : 758- 780: arlpa GGqAtPMTYeinGkQYVVimaG-G hgsfg DHG_ECOLI : 752- 774: grlpa GGqAtPMTYevnGkQYVVisaG-G hgsfg DHG_GLUOX : 765- 787: drlpa GAqAtPITYainGkQYIVtyaG-G hnsfp DHM1_METEX : 542- 565: fkips GAiGyPMTYthkGtQYVAiyyGvG gwpgv DHM1_METME : 506- 529: fkmps GGiGsPMTYsfkGkQYIGsmyGvG gwpgv DHM1_METOR : 542- 565: fkips GAiGyPMTYthkGtQYVAiyyGvG gwpgv DHM1_PARDE : 546- 569: fklps GViGhPMTYkhdGrQYVAimyGvG gwpgv B 2: 45.1505 12( 9) G-x(3,4)-P-[IMV]-T-Y-x(3)-G-x-Q-Y-[IV]-[AGV]-x(3)-G-x(0,1)-G Occurences: 12(9) DHET_ACEAC : 559- 582: fdaqs GiiapPMTYsvnGkQYVAvevGwG giypi DHET_ACEPO : 559- 582: faads GiiapPVTYlanGkQYVAvevGwG giypf DHGA_ACICA : 758- 780: arlpa GgqatPMTYeinGkQYVVimaG-G hgsfg DHGA_ACICA : 759- 780: rlpag Gqat-PMTYeinGkQYVVimaG-G hgsfg DHG_ECOLI : 752- 774: grlpa GgqatPMTYevnGkQYVVisaG-G hgsfg DHG_ECOLI : 753- 774: rlpag Gqat-PMTYevnGkQYVVisaG-G hgsfg DHG_GLUOX : 765- 787: drlpa GaqatPITYainGkQYIVtyaG-G hnsfp DHM1_METEX : 542- 565: fkips GaigyPMTYthkGtQYVAiyyGvG gwpgv DHM1_METME : 506- 529: fkmps GgigsPMTYsfkGkQYIGsmyGvG gwpgv DHM1_METME : 507- 529: kmpsg Gigs-PMTYsfkGkQYIGsmyGvG gwpgv DHM1_METOR : 542- 565: fkips GaigyPMTYthkGtQYVAiyyGvG gwpgv DHM1_PARDE : 546- 569: fklps GvighPMTYkhdGrQYVAimyGvG gwpgv C 3: 41.8951 9( 9) D-x(3,4)-A-x-[DN]-x(2)-[DNT]-G-[DEK]-x-[LV]-W-x(4,5)-P-[APS]-[DEG]-[AGV]-x-[AGL] Occurences: 9(9) DHET_ACEAC : 163- 189: fwgtf DgrlvAaDakTGKkVWavntiPADAsL gkqrs DHET_ACEPO : 164- 190: yfgtf DgrliAlDakTGKlVWsvntiPPEAeL gkqrs DHGA_ACICA : 736- 761: vgatq DnylrAfNvtNGKkLWearl-PAGGqA tpmty DHG_ECOLI : 730- 755: iaata DnylrAyNmsNGEkLWqgrl-PAGGqA tpmty DHG_GLUOX : 743- 768: ltasm DyyirAyNltTGKvLWqdrl-PAGAqA tpity DHM1_METEX : 520- 545: fygtl DgylkArDsdTGDlLWkfki-PSGAiG ypmty DHM1_METME : 484- 509: wyatl DgylkAlDnkDGKeLWnfkm-PSGGiG spmty DHM1_METOR : 520- 545: fygtl DgylkArDsdTGDlLWkfki-PSGAiG ypmty DHM1_PARDE : 524- 549: fyvtl DgfikArDsdTGDlLWkfkl-PSGViG hpmty D 4: 41.4805 9( 9) P-[IMV]-T-Y-x(3)-G-x-Q-Y-[IV]-[AGV]-x(3)-G-x(0,1)-G Occurences: 9(9) DHET_ACEAC : 564- 582: giiap PMTYsvnGkQYVAvevGwG giypi DHET_ACEPO : 564- 582: giiap PVTYlanGkQYVAvevGwG giypf DHGA_ACICA : 763- 780: ggqat PMTYeinGkQYVVimaG-G hgsfg DHG_ECOLI : 757- 774: ggqat PMTYevnGkQYVVisaG-G hgsfg DHG_GLUOX : 770- 787: gaqat PITYainGkQYIVtyaG-G hnsfp DHM1_METEX : 547- 565: gaigy PMTYthkGtQYVAiyyGvG gwpgv DHM1_METME : 511- 529: ggigs PMTYsfkGkQYIGsmyGvG gwpgv DHM1_METOR : 547- 565: gaigy PMTYthkGtQYVAiyyGvG gwpgv DHM1_PARDE : 551- 569: gvigh PMTYkhdGrQYVAimyGvG gwpgv E 5: 40.8554 9( 9) W-x(3)-[ASV]-Y-D-x(2,4)-L-x(1,3)-Y-x-[AGP]-x-G-[NV]-[GPT]-[AST]-P Occurences: 9(9) DHET_ACEAC : 280- 301: gggtv WdslVYDpvsdLi--YlAvGNGSP wnyky DHET_ACEPO : 280- 301: gggtv WdsiVYDpvadLv--YlGvGNGSP wnyky DHGA_ACICA : 409- 430: nspna WaplAYDak--LdivYvPtGVGTP diwgg DHG_ECOLI : 404- 425: nspns WapaAYDakldLv--YlPmGVTTP diwgg DHG_ECOLI : 404- 425: nspns WapaAYDak--LdlvYlPmGVTTP diwgg DHG_GLUOX : 408- 429: nspns WivsSYDanlnLv--YiPmGVGTP dqwgg DHG_GLUOX : 408- 429: nspns WivsSYDan--LnlvYiPmGVGTP dqwgg DHM1_METEX : 270- 291: gggtn WgwyAYDpgtnLi--YfGtGNPAP wnetm DHM1_METME : 237- 258: gggtn WgwyAYDpklnLf--YyGsGNPAP wnetm DHM1_METME : 237- 258: gggtn WgwyAYDpk--LnlfYyGsGNPAP wnetm DHM1_METOR : 270- 291: gggtn WgwyAYDpgtnLi--YfGtGNPAP wnetm DHM1_PARDE : 275- 296: gggtn WgwyAYDpevdLf--YyGsGNPAP wnetm F 6: 37.1781 9( 9) G-[DEK]-x-L-W-x(3,4)-P-x(1,3)-G-x(2)-[AG]-x(3)-[CT]-x(4)-[GN]-x-[GQ]-x-[AGIV] Occurences: 9(9) DHET_ACEAC : 123- 151: ldaat GKlLWqyd-PkvpGniAdkgCcdtvNrGaG ywngk DHET_ACEPO : 124- 152: vdaat GKlLWsyd-PrvpGniAdkgCcdtvNrGaA ywngk DHGA_ACICA : 747- 774: fnvtn GKkLWearlPa--GgqAtpmTyeinGkQyV vimag DHG_ECOLI : 741- 768: ynmsn GEkLWqgrlPa--GgqAtpmTyevnGkQyV visag DHG_GLUOX : 754- 781: ynltt GKvLWqdrlPa--GaqAtpiTyainGkQyI vtyag DHM1_METEX : 531- 558: rdsdt GDlLWkfkiPs--GaiGypmTythkGtQyV aiyyg DHM1_METME : 495- 522: ldnkd GKeLWnfkmPs--GgiGspmTysfkGkQyI gsmyg DHM1_METOR : 531- 558: rdsdt GDlLWkfkiPs--GaiGypmTythkGtQyV aiyyg DHM1_PARDE : 535- 562: rdsdt GDlLWkfklPs--GviGhpmTykhdGrQyV aimyg G 7: 34.7944 9( 9) G-[CDNS]-x-G-x(1,2)-E-x-G-x(0,2)-G-x(2)-[NSTV]-[ADN]-x-[DNQ]-x(2)-[STV]-[AG] Occurences: 9(9) DHET_ACEAC : 211- 231: glvli GNgGa-EfGarGfvSAfDaeTG klkwr DHET_ACEPO : 212- 232: grvii GNgGs-EfGarGfvSAfDaeTG kvdwr DHGA_ACICA : 596- 615: tlvfp GNlGvfEwG--GmsVNpDrqVA vmnpi DHG_ECOLI : 585- 604: tlvfp GNlGmfEwG--GisVDpNreVA ianpm DHG_GLUOX : 590- 609: slifp GDlGmfEwG--GlaVDpQrqVA fanpi DHM1_METEX : 199- 219: dkvii GSsGa-ElGvrGylTAyDvkTG eqvwr DHM1_METME : 166- 186: dtvlm GCsGa-ElGvrGavNAfDlkTG elkwr DHM1_METOR : 199- 219: dkvii GSsGa-ElGvrGylTAyDvkTG gqvwr DHM1_PARDE : 204- 224: dlvlv GSsGa-ElGvrGyvTAyDvkSG emrwr H 8: 34.5142 9( 9) T-Y-x(3)-G-x-Q-Y-[IV]-[AGV]-x(3)-G-x(0,1)-G Occurences: 9(9) DHET_ACEAC : 566- 582: iappm TYsvnGkQYVAvevGwG giypi DHET_ACEPO : 566- 582: iappv TYlanGkQYVAvevGwG giypf DHGA_ACICA : 765- 780: qatpm TYeinGkQYVVimaG-G hgsfg DHG_ECOLI : 759- 774: qatpm TYevnGkQYVVisaG-G hgsfg DHG_GLUOX : 772- 787: qatpi TYainGkQYIVtyaG-G hnsfp DHM1_METEX : 549- 565: igypm TYthkGtQYVAiyyGvG gwpgv DHM1_METME : 513- 529: igspm TYsfkGkQYIGsmyGvG gwpgv DHM1_METOR : 549- 565: igypm TYthkGtQYVAiyyGvG gwpgv DHM1_PARDE : 553- 569: ighpm TYkhdGrQYVAimyGvG gwpgv I 9: 34.0882 9( 9) Y-D-x(2,4)-L-x(1,3)-Y-x-[AGP]-x-G-[NV]-[GPT]-[AST]-P Occurences: 9(9) DHET_ACEAC : 285- 301: wdslv YDpvsdLi--YlAvGNGSP wnyky DHET_ACEPO : 285- 301: wdsiv YDpvadLv--YlGvGNGSP wnyky DHGA_ACICA : 414- 430: wapla YDak--LdivYvPtGVGTP diwgg DHG_ECOLI : 409- 425: wapaa YDakldLv--YlPmGVTTP diwgg DHG_ECOLI : 409- 425: wapaa YDak--LdlvYlPmGVTTP diwgg DHG_GLUOX : 413- 429: wivss YDanlnLv--YiPmGVGTP dqwgg DHG_GLUOX : 413- 429: wivss YDan--LnlvYiPmGVGTP dqwgg DHM1_METEX : 275- 291: wgwya YDpgtnLi--YfGtGNPAP wnetm DHM1_METME : 242- 258: wgwya YDpklnLf--YyGsGNPAP wnetm DHM1_METME : 242- 258: wgwya YDpk--LnlfYyGsGNPAP wnetm DHM1_METOR : 275- 291: wgwya YDpgtnLi--YfGtGNPAP wnetm DHM1_PARDE : 280- 296: wgwya YDpevdLf--YyGsGNPAP wnetm J 10: 32.3400 9( 9) A-x-D-[AGNPS]-x-[DST]-G-x(3)-W-x(3,4)-P-x-[GLV]-x(2)-[DGN]-x-[AGPS] Occurences: 9(9) DHET_ACEAC : 117- 138: wskme AlDAaTGkllWqyd-PkVpgNiA dkgcc DHET_ACEPO : 118- 139: wsmmk AvDAaTGkllWsyd-PrVpgNiA dkgcc DHGA_ACICA : 236- 257: hqqli AiDPaTGkekWrfd-PkLktDkS fqhlt DHG_ECOLI : 238- 259: hqrlf AlDAaSGkekWhyd-PeLktNeS fqhvt DHG_GLUOX : 237- 258: hqklf AvDGaTGnvkWvyd-PkLqiNpG fqhlt DHM1_METEX : 525- 547: dgylk ArDSdTGdllWkfkiPsGaiGyP mtyth DHM1_METME : 489- 511: dgylk AlDNkDGkelWnfkmPsGgiGsP mtysf DHM1_METOR : 525- 547: dgylk ArDSdTGdllWkfkiPsGaiGyP mtyth DHM1_PARDE : 529- 551: dgfik ArDSdTGdllWkfklPsGviGhP mtykh K 11: 32.0267 10( 9) G-x(2,3)-A-x(1,2)-D-[ALV]-[EK]-T-x(4)-W-x(4)-[CGSTV]-[DGPT]-x(3)-[DGNS] Occurences: 10(9) DHET_ACEAC : 221- 245: efgar GfvsAf-DAETgklkWrfytVPnnkN epdha DHET_ACEPO : 222- 246: efgar GfvsAf-DAETgkvdWrfftVPnpkN epdaa DHGA_ACICA : 677- 701: kqpaw Gyv-AgvDLKThevvWkkriGTirdS lpnlf DHG_ECOLI : 670- 694: kqpaw GyisAl-DLKTnevvWkkriGTpqdS mpfpm DHG_GLUOX : 681- 705: rtppw Gyv-AgiDLKTnkvvWqhrnGTlrdS mygss DHM1_METEX : 209- 233: elgvr GyltAy-DVKTgeqvWrayaTGpdkD lllas DHM1_METME : 125- 149: kkqan GhllAl-DAKTgkinWevevCDpkvG stltq DHM1_METME : 176- 200: elgvr GavnAf-DLKTgelkWrafaTGsddS vrlak DHM1_METOR : 209- 233: elgvr GyltAy-DVKTggqvWrayaTGpdkD lllad DHM1_PARDE : 163- 187: rtqld GhivAm-DAETgetrWimenSDikvG stlti L 12: 31.8708 9( 9) A-[FILMV]-[DN]-A-x-T-G-[EK]-x(2)-W-x(2)-[DEQ] Occurences: 9(9) DHET_ACEAC : 117- 130: wskme ALDAaTGKllWqyD pkvpg DHET_ACEPO : 118- 131: wsmmk AVDAaTGKllWsyD prvpg DHGA_ACICA : 450- 463: ansml AINAsTGKlvWnfQ tthhd DHG_ECOLI : 445- 458: assil ALNAtTGKlaWsyQ tvhhd DHG_GLUOX : 449- 462: apgiv ALNAdTGKlaWfyQ tvhhd DHM1_METEX : 162- 175: dgnva ALNAeTGEtvWkvE nsdik DHM1_METME : 129- 142: nghll ALDAkTGKinWevE vcdpk DHM1_METOR : 162- 175: drhvv ALNAeTGEtvWkvE nsdik DHM1_PARDE : 167- 180: dghiv AMDAeTGEtrWimE nsdik M 13: 30.3442 9( 9) Y-x(3)-G-x-Q-Y-[IV]-[AGV]-x(3)-G-x(0,1)-G Occurences: 9(9) DHET_ACEAC : 567- 582: appmt YsvnGkQYVAvevGwG giypi DHET_ACEPO : 567- 582: appvt YlanGkQYVAvevGwG giypf DHGA_ACICA : 766- 780: atpmt YeinGkQYVVimaG-G hgsfg DHG_ECOLI : 760- 774: atpmt YevnGkQYVVisaG-G hgsfg DHG_GLUOX : 773- 787: atpit YainGkQYIVtyaG-G hnsfp DHM1_METEX : 550- 565: gypmt YthkGtQYVAiyyGvG gwpgv DHM1_METME : 514- 529: gspmt YsfkGkQYIGsmyGvG gwpgv DHM1_METOR : 550- 565: gypmt YthkGtQYVAiyyGvG gwpgv DHM1_PARDE : 554- 569: ghpmt YkhdGrQYVAimyGvG gwpgv N 14: 26.6554 11( 9) A-x-[DN]-x(2)-T-G-[DEK]-L-x-W Occurences: 11(9) DHET_ACEAC : 117- 127: wskme AlDaaTGKLlW qydpk DHET_ACEAC : 225- 235: rgfvs AfDaeTGKLkW rfytv DHET_ACEPO : 118- 128: wsmmk AvDaaTGKLlW sydpr DHET_ACEPO : 169- 179: dgrli AlDakTGKLvW svnti DHGA_ACICA : 450- 460: ansml AiNasTGKLvW nfqtt DHG_ECOLI : 445- 455: assil AlNatTGKLaW syqtv DHG_GLUOX : 449- 459: apgiv AlNadTGKLaW fyqtv DHM1_METEX : 525- 535: dgylk ArDsdTGDLlW kfkip DHM1_METME : 180- 190: rgavn AfDlkTGELkW rafat DHM1_METOR : 525- 535: dgylk ArDsdTGDLlW kfkip DHM1_PARDE : 529- 539: dgfik ArDsdTGDLlW kfklp O 15: 26.1741 9( 9) G-x-Q-Y-[IV]-[AGV]-x(3)-G-x(0,1)-G Occurences: 9(9) DHET_ACEAC : 571- 582: tysvn GkQYVAvevGwG giypi DHET_ACEPO : 571- 582: tylan GkQYVAvevGwG giypf DHGA_ACICA : 770- 780: tyein GkQYVVimaG-G hgsfg DHG_ECOLI : 764- 774: tyevn GkQYVVisaG-G hgsfg DHG_GLUOX : 777- 787: tyain GkQYIVtyaG-G hnsfp DHM1_METEX : 554- 565: tythk GtQYVAiyyGvG gwpgv DHM1_METME : 518- 529: tysfk GkQYIGsmyGvG gwpgv DHM1_METOR : 554- 565: tythk GtQYVAiyyGvG gwpgv DHM1_PARDE : 558- 569: tykhd GrQYVAimyGvG gwpgv P 16: 25.6231 10( 9) G-x(2,3)-A-x(1,2)-D-[ALV]-K-[ST]-x(4)-W Occurences: 10(9) DHET_ACEAC : 164- 178: wgtfd GrlvAa-DAKTgkkvW avnti DHET_ACEPO : 165- 179: fgtfd GrliAl-DAKTgklvW svnti DHGA_ACICA : 677- 691: kqpaw Gyv-AgvDLKThevvW kkrig DHG_ECOLI : 670- 684: kqpaw GyisAl-DLKTnevvW kkrig DHG_GLUOX : 681- 695: rtppw Gyv-AgiDLKTnkvvW qhrng DHM1_METEX : 209- 223: elgvr GyltAy-DVKTgeqvW rayat DHM1_METME : 125- 139: kkqan GhllAl-DAKTgkinW evevc DHM1_METME : 176- 190: elgvr GavnAf-DLKTgelkW rafat DHM1_METOR : 209- 223: elgvr GyltAy-DVKTggqvW rayat DHM1_PARDE : 214- 228: elgvr GyvtAy-DVKSgemrW rafat Q 17: 24.8419 9( 9) Y-x(1,3)-G-x(2)-Y-x(0,1)-V-x(4)-G-x-[GN]-x(3)-[DGPT] Occurences: 9(9) DHET_ACEAC : 567- 586: appmt YsvnGkqY-VavevGwGgiyP ismgg DHET_ACEPO : 567- 586: appvt YlanGkqY-VavevGwGgiyP fflgg DHGA_ACICA : 766- 786: atpmt YeinGkqYvVimagGhGsfgT kmgdy DHG_ECOLI : 760- 780: atpmt YevnGkqYvVisagGhGsfgT kmgdy DHG_GLUOX : 773- 793: atpit YainGkqYiVtyagGhNsfpT rmgdd DHM1_METEX : 550- 569: gypmt YthkGtqY-VaiyyGvGgwpG vglvf DHM1_METME : 521- 539: fkgkq Yi--GsmYgVggwpGvGlvfD ltdps DHM1_METOR : 550- 569: gypmt YthkGtqY-VaiyyGvGgwpG vglvf DHM1_PARDE : 554- 573: ghpmt YkhdGrqY-VaimyGvGgwpG vglvf R 18: 22.9746 11( 9) I-x(0,1)-A-x(2)-[ALP]-x-T-G-x(3)-W Occurences: 11(9) DHET_ACEAC : 320- 332: lflgs IvAlkPeTGeyvW hfqat DHET_ACEPO : 168- 179: fdgrl I-AldAkTGklvW svnti DHET_ACEPO : 320- 332: lflgs IvAlkPeTGeyvW hfqet DHGA_ACICA : 235- 246: ahqql I-AidPaTGkekW rfdpk DHG_ECOLI : 443- 455: ryass IlAlnAtTGklaW syqtv DHG_GLUOX : 447- 459: rfapg IvAlnAdTGklaW fyqtv DHG_GLUOX : 746- 758: smdyy IrAynLtTGkvlW qdrlp DHM1_METEX : 482- 494: eglgq IkAynAiTGdykW ekmer DHM1_METME : 446- 458: kemgq IrAfdLtTGkakW tkwek DHM1_METOR : 482- 494: eglgq IkAynAiTGsykW ekmer DHM1_PARDE : 165- 177: qldgh IvAmdAeTGetrW imens S 19: 22.4815 14( 9) D-x(0,2)-T-G-[DEK]-L-x-W Occurences: 14(9) DHET_ACEAC : 119- 127: kmeal DaaTGKLlW qydpk DHET_ACEAC : 227- 235: fvsaf DaeTGKLkW rfytv DHET_ACEPO : 120- 128: mmkav DaaTGKLlW sydpr DHET_ACEPO : 171- 179: rlial DakTGKLvW svnti DHGA_ACICA : 374- 382: virgy DvnTGKLlW vfdtg DHG_ECOLI : 369- 377: virgf DvnTGELlW afdpg DHG_GLUOX : 453- 459: valna D--TGKLaW fyqtv DHM1_METEX : 527- 535: ylkar DsdTGDLlW kfkip DHM1_METEX : 529- 535: kards D--TGDLlW kfkip DHM1_METME : 182- 190: avnaf DlkTGELkW rafat DHM1_METOR : 527- 535: ylkar DsdTGDLlW kfkip DHM1_METOR : 529- 535: kards D--TGDLlW kfkip DHM1_PARDE : 531- 539: fikar DsdTGDLlW kfklp DHM1_PARDE : 533- 539: kards D--TGDLlW kfklp T 20: 22.4493 9( 9) G-x(1,2)-L-x(2)-F-x(3,4)-G-x(2)-[AGV]-x-P Occurences: 9(9) DHET_ACEAC : 548- 564: ydatn GsdLykFdaqsGiiApP mtysv DHET_ACEPO : 548- 564: ydatn GsdLfhFaadsGiiApP vtyla DHGA_ACICA : 596- 610: tlvfp Gn-LgvFewg-GmsVnP drqva DHG_ECOLI : 585- 599: tlvfp Gn-LgmFewg-GisVdP nreva DHG_GLUOX : 590- 604: slifp Gd-LgmFewg-GlaVdP qrqva DHM1_METEX : 531- 547: rdsdt GdlLwkFkipsGaiGyP mtyth DHM1_METME : 495- 511: ldnkd GkeLwnFkmpsGgiGsP mtysf DHM1_METOR : 531- 547: rdsdt GdlLwkFkipsGaiGyP mtyth DHM1_PARDE : 535- 551: rdsdt GdlLwkFklpsGviGhP mtykh Number of patterns evaluated by Pratt:33823 Total running time: 37 seconds