------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file BACTERIAL_OPSIN_RET PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename BACTERIAL_OPSIN_RET.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BAC1_HALS1 260 BAC2_HALS2 259 BACH_HALHM 206 BACH_HALSP 274 BACH_HALSS 284 BACH_NATPH 291 BACR_HALHA 262 BACR_HALHM 204 BACR_HALHP 211 BACR_HALHS 209 BACS_HALHA 239 BACS_HALSS 247 BACT_NATPH 239 Pratt run started at Thu Feb 6 18:57:30 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 25.0203 13( 13) W-x(2)-Y-P-x(2)-W-x(2)-G-x(2)-G 2: 24.0203 18( 13) L-x(1,3)-Y-P-x(2)-W-x(2)-G-x(2)-G 3: 20.8503 13( 13) Y-P-x(2)-W-x(2)-G-x(2)-G 4: 19.8503 15( 13) R-Y-x(2)-W-x(3)-T-x(1,3)-L 5: 19.8503 13( 13) R-Y-x(2)-W-x(2,3)-T-x(0,1)-P 6: 16.6802 13( 13) P-x(2)-W-x(2)-G-x(2)-G 7: 15.6802 15( 13) Y-x(2)-W-x(3)-T-x(1,3)-L 8: 15.6802 16( 13) R-Y-x(1,2)-W-x(3,4)-T 9: 15.6802 13( 13) W-x(3)-T-P-x(0,2)-L 10: 15.6802 13( 13) Y-x(2)-W-x(2,3)-T-x(0,1)-P 11: 14.6802 17( 13) L-x(3,5)-V-x(0,2)-L-x(3)-A 12: 14.6802 26( 13) L-x(4)-L-x(0,2)-L-x(0,2)-A 13: 12.5102 13( 13) W-x(2)-G-x(2)-G 14: 12.0102 21( 13) V-x(3)-G-x(4,5)-A 15: 12.0102 17( 13) A-x(1,2)-V-x(2)-L 16: 12.0102 22( 13) A-x(2,3)-V-x-L 17: 12.0102 16( 13) G-x(3,4)-G-L 18: 12.0102 24( 13) G-x(2,3)-A-G 19: 12.0102 18( 13) V-x(2,3)-W-x(2)-Y 20: 12.0102 16( 13) A-L-x(2,3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 84.9940 13( 13) R-Y-x-[DT]-W-x(2,3)-T-x(0,1)-P-[ILM]-[IL]-[LV]-x(2)-[ILV]-[AG]-x-[ALV]-[AV]-x(2)-[DNS]-x(3)-[FIL]-x(2)-[ALV]-[IMV]-x(2)-[DN]-x-[AGILV]-[MV]-x-[AGILV]-x-G-x-[AGIV]-[AG]-[ATV]-[LMV]-[STV]-x-[GSTV] B 2: 82.3151 13( 13) R-Y-x(1,2)-W-x(3)-T-P-[ILM]-[IL]-[LV]-x(2)-[ILV]-[AG]-x-[ALV]-[AV]-x(2)-[DNS]-x(3)-[FIL]-x(2)-[ALV]-[IMV]-x(2)-[DN]-x-[AGILV]-[MV]-x-[AGILV]-x-G-x-[AGIV]-[AG]-[ATV]-[LMV]-[STV]-x-[GSTV] C 3: 80.8240 13( 13) Y-x-[DT]-W-x(2,3)-T-x(0,1)-P-[ILM]-[IL]-[LV]-x(2)-[ILV]-[AG]-x-[ALV]-[AV]-x(2)-[DNS]-x(3)-[FIL]-x(2)-[ALV]-[IMV]-x(2)-[DN]-x-[AGILV]-[MV]-x-[AGILV]-x-G-x-[AGIV]-[AG]-[ATV]-[LMV]-[STV]-x-[GSTV] D 4: 46.4013 13( 13) W-x-[AGIV]-Y-P-[FILV]-x-W-[AIL]-[FILMV]-G-x(2)-G-[AILV]-[AG]-x(4)-[AGNTV]-[GIV]-x-[ASTV] E 5: 43.7379 13( 13) R-Y-x-[DT]-W-[AIL]-[FLV]-[ST]-T-x(1,3)-L-[ILV]-[AGLV]-x(2)-[AGL]-x-[ALV]-x-[AGSV] F 6: 43.1590 18( 13) L-x(1,3)-Y-P-[FILV]-x-W-[AIL]-[FILMV]-G-x(2)-G-[AILV]-[AG]-x(4)-[AGNTV]-[GIV]-x-[ASTV] G 7: 39.9889 13( 13) Y-P-[FILV]-x-W-[AIL]-[FILMV]-G-x(2)-G-[AILV]-[AG]-x(4)-[AGNTV]-[GIV]-x-[ASTV] H 8: 39.5678 13( 13) Y-x-[DT]-W-[AIL]-[FLV]-[ST]-T-x(1,3)-L-[ILV]-[AGLV]-x(2)-[AGL]-x-[ALV]-x-[AGSV] I 9: 36.3889 13( 13) W-[AIL]-[FLV]-[ST]-T-P-x(0,2)-L-[ILV]-[AGLV]-x(2)-[AGL]-x-[ALV]-x-[AGSV] J 10: 35.8189 13( 13) P-[FILV]-x-W-[AIL]-[FILMV]-G-x(2)-G-[AILV]-[AG]-x(4)-[AGNTV]-[GIV]-x-[ASTV] K 11: 29.3923 13( 13) W-[AIL]-[FILMV]-G-x(2)-G-[AILV]-[AG]-x(4)-[AGNTV]-[GIV]-x-[ASTV] L 12: 27.3894 13( 13) V-x(2,3)-W-x-[AGILV]-Y-x(4)-[AGIL]-x-[GP]-x(2)-[GS]-[AILV]-[AGL] M 13: 16.0998 24( 13) L-x(4)-L-x(0,2)-L-x(0,2)-A-x(2)-[ADGNPST] N 14: 14.6802 17( 13) L-x(3,5)-V-x(0,2)-L-x(3)-A O 15: 12.0102 21( 13) V-x(3)-G-x(4,5)-A P 16: 12.0102 17( 13) A-x(1,2)-V-x(2)-L Q 17: 12.0102 22( 13) A-x(2,3)-V-x-L R 18: 12.0102 16( 13) G-x(3,4)-G-L S 19: 12.0102 24( 13) G-x(2,3)-A-G T 20: 12.0102 16( 13) A-L-x(2,3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 84.9940 13( 13) R-Y-x-[DT]-W-x(2,3)-T-x(0,1)-P-[ILM]-[IL]-[LV]-x(2)-[ILV]-[AG]-x-[ALV]-[AV]-x(2)-[DNS]-x(3)-[FIL]-x(2)-[ALV]-[IMV]-x(2)-[DN]-x-[AGILV]-[MV]-x-[AGILV]-x-G-x-[AGIV]-[AG]-[ATV]-[LMV]-[STV]-x-[GSTV] Occurences: 13(13) BAC1_HALS1 : 94- 142: diyya RYaDWlftT-PLLLldLAlLAkvDrvsIgtLVgvDaLMiVtGlVGALShT plary BAC1_HALS1 : 94- 142: diyya RYaDWlf-TtPLLLldLAlLAkvDrvsIgtLVgvDaLMiVtGlVGALShT plary BAC2_HALS2 : 93- 141: diyya RYaDWlftT-PLLLldLAlLAkvDrvtIgtLIgvDaLMiVtGlIGALSkT plary BAC2_HALS2 : 93- 141: diyya RYaDWlf-TtPLLLldLAlLAkvDrvtIgtLIgvDaLMiVtGlIGALSkT plary BACH_HALHM : 78- 126: ftpwg RYlTWafsT-PMILiaLGlLAgsNmskLftAVvaDvGMcItGlAAALTtS syllr BACH_HALSP : 108- 156: rsqwg RYlTWalsT-PMILlaLGlLAdvDlgsLftVIaaDiGMcVtGlAAAMTtS allfr BACH_HALSS : 113- 161: ltpwg RYlTWalsT-PMILiaVGlLAgsNttkLftAVvaDiGMcVtGlAAALTtS syllr BACH_NATPH : 123- 171: vtmwg RYlTWalsT-PMILlaLGlLAgsNatkLftAItfDiAMcVtGlAAALTtS shlmr BACR_HALHA : 95- 143: piywa RYaDWlftT-PLLLldLAlLVdaDqgtIlaLVgaDgIMiGtGlVGALTkV ysyrf BACR_HALHA : 95- 143: piywa RYaDWlf-TtPLLLldLAlLVdaDqgtIlaLVgaDgIMiGtGlVGALTkV ysyrf BACR_HALHM : 71- 119: eiyya RYaDWlftT-PLLLldLAlLAnaDrttIgtLIgvDaLMiVtGlIGALShT plary BACR_HALHM : 71- 119: eiyya RYaDWlf-TtPLLLldLAlLAnaDrttIgtLIgvDaLMiVtGlIGALShT plary BACR_HALHP : 72- 120: piywa RYsDWlftT-PLLLydLGlLAgaDrntItsLVslDvLMiGtGlVATLSaG sgvls BACR_HALHP : 72- 120: piywa RYsDWlf-TtPLLLydLGlLAgaDrntItsLVslDvLMiGtGlVATLSaG sgvls BACR_HALHS : 70- 118: piywa RYtDWlftT-PLLLydLGlLAgaDrntIysLVslDvLMiGtGvVATLSaG sgvls BACR_HALHS : 70- 118: piywa RYtDWlf-TtPLLLydLGlLAgaDrntIysLVslDvLMiGtGvVATLSaG sgvls BACS_HALHA : 73- 121: qivgl RYiDWlvtT-PILVgyVGyAAgaSrrsIigVMvaDaLMiAvGaGAVVTdG tlkwa BACS_HALHA : 73- 121: qivgl RYiDWlv-TtPILVgyVGyAAgaSrrsIigVMvaDaLMiAvGaGAVVTdG tlkwa BACS_HALSS : 74- 122: elvgl RYvDWivtT-PLLVgfIGyVAgaSrraIagVMlaDaLMiAfGaGAVVTgG tlkwv BACS_HALSS : 74- 122: elvgl RYvDWiv-TtPLLVgfIGyVAgaSrraIagVMlaDaLMiAfGaGAVVTgG tlkwv BACT_NATPH : 72- 120: tvfap RYiDWiltT-PLIVyfLGlLAglDsreFgiVItlNtVVmLaGfAGAMVpG ierya BACT_NATPH : 72- 120: tvfap RYiDWil-TtPLIVyfLGlLAglDsreFgiVItlNtVVmLaGfAGAMVpG ierya B 2: 82.3151 13( 13) R-Y-x(1,2)-W-x(3)-T-P-[ILM]-[IL]-[LV]-x(2)-[ILV]-[AG]-x-[ALV]-[AV]-x(2)-[DNS]-x(3)-[FIL]-x(2)-[ALV]-[IMV]-x(2)-[DN]-x-[AGILV]-[MV]-x-[AGILV]-x-G-x-[AGIV]-[AG]-[ATV]-[LMV]-[STV]-x-[GSTV] Occurences: 13(13) BAC1_HALS1 : 94- 142: diyya RYadWlftTPLLLldLAlLAkvDrvsIgtLVgvDaLMiVtGlVGALShT plary BAC2_HALS2 : 93- 141: diyya RYadWlftTPLLLldLAlLAkvDrvtIgtLIgvDaLMiVtGlIGALSkT plary BACH_HALHM : 78- 126: ftpwg RYltWafsTPMILiaLGlLAgsNmskLftAVvaDvGMcItGlAAALTtS syllr BACH_HALSP : 108- 156: rsqwg RYltWalsTPMILlaLGlLAdvDlgsLftVIaaDiGMcVtGlAAAMTtS allfr BACH_HALSS : 113- 161: ltpwg RYltWalsTPMILiaVGlLAgsNttkLftAVvaDiGMcVtGlAAALTtS syllr BACH_NATPH : 123- 171: vtmwg RYltWalsTPMILlaLGlLAgsNatkLftAItfDiAMcVtGlAAALTtS shlmr BACR_HALHA : 95- 143: piywa RYadWlftTPLLLldLAlLVdaDqgtIlaLVgaDgIMiGtGlVGALTkV ysyrf BACR_HALHM : 71- 119: eiyya RYadWlftTPLLLldLAlLAnaDrttIgtLIgvDaLMiVtGlIGALShT plary BACR_HALHP : 72- 120: piywa RYsdWlftTPLLLydLGlLAgaDrntItsLVslDvLMiGtGlVATLSaG sgvls BACR_HALHS : 70- 118: piywa RYtdWlftTPLLLydLGlLAgaDrntIysLVslDvLMiGtGvVATLSaG sgvls BACS_HALHA : 73- 121: qivgl RYidWlvtTPILVgyVGyAAgaSrrsIigVMvaDaLMiAvGaGAVVTdG tlkwa BACS_HALSS : 74- 122: elvgl RYvdWivtTPLLVgfIGyVAgaSrraIagVMlaDaLMiAfGaGAVVTgG tlkwv BACT_NATPH : 72- 120: tvfap RYidWiltTPLIVyfLGlLAglDsreFgiVItlNtVVmLaGfAGAMVpG ierya C 3: 80.8240 13( 13) Y-x-[DT]-W-x(2,3)-T-x(0,1)-P-[ILM]-[IL]-[LV]-x(2)-[ILV]-[AG]-x-[ALV]-[AV]-x(2)-[DNS]-x(3)-[FIL]-x(2)-[ALV]-[IMV]-x(2)-[DN]-x-[AGILV]-[MV]-x-[AGILV]-x-G-x-[AGIV]-[AG]-[ATV]-[LMV]-[STV]-x-[GSTV] Occurences: 13(13) BAC1_HALS1 : 95- 142: iyyar YaDWlftT-PLLLldLAlLAkvDrvsIgtLVgvDaLMiVtGlVGALShT plary BAC1_HALS1 : 95- 142: iyyar YaDWlf-TtPLLLldLAlLAkvDrvsIgtLVgvDaLMiVtGlVGALShT plary BAC2_HALS2 : 94- 141: iyyar YaDWlftT-PLLLldLAlLAkvDrvtIgtLIgvDaLMiVtGlIGALSkT plary BAC2_HALS2 : 94- 141: iyyar YaDWlf-TtPLLLldLAlLAkvDrvtIgtLIgvDaLMiVtGlIGALSkT plary BACH_HALHM : 79- 126: tpwgr YlTWafsT-PMILiaLGlLAgsNmskLftAVvaDvGMcItGlAAALTtS syllr BACH_HALSP : 109- 156: sqwgr YlTWalsT-PMILlaLGlLAdvDlgsLftVIaaDiGMcVtGlAAAMTtS allfr BACH_HALSS : 114- 161: tpwgr YlTWalsT-PMILiaVGlLAgsNttkLftAVvaDiGMcVtGlAAALTtS syllr BACH_NATPH : 124- 171: tmwgr YlTWalsT-PMILlaLGlLAgsNatkLftAItfDiAMcVtGlAAALTtS shlmr BACR_HALHA : 96- 143: iywar YaDWlftT-PLLLldLAlLVdaDqgtIlaLVgaDgIMiGtGlVGALTkV ysyrf BACR_HALHA : 96- 143: iywar YaDWlf-TtPLLLldLAlLVdaDqgtIlaLVgaDgIMiGtGlVGALTkV ysyrf BACR_HALHM : 72- 119: iyyar YaDWlftT-PLLLldLAlLAnaDrttIgtLIgvDaLMiVtGlIGALShT plary BACR_HALHM : 72- 119: iyyar YaDWlf-TtPLLLldLAlLAnaDrttIgtLIgvDaLMiVtGlIGALShT plary BACR_HALHP : 73- 120: iywar YsDWlftT-PLLLydLGlLAgaDrntItsLVslDvLMiGtGlVATLSaG sgvls BACR_HALHP : 73- 120: iywar YsDWlf-TtPLLLydLGlLAgaDrntItsLVslDvLMiGtGlVATLSaG sgvls BACR_HALHS : 71- 118: iywar YtDWlftT-PLLLydLGlLAgaDrntIysLVslDvLMiGtGvVATLSaG sgvls BACR_HALHS : 71- 118: iywar YtDWlf-TtPLLLydLGlLAgaDrntIysLVslDvLMiGtGvVATLSaG sgvls BACS_HALHA : 74- 121: ivglr YiDWlvtT-PILVgyVGyAAgaSrrsIigVMvaDaLMiAvGaGAVVTdG tlkwa BACS_HALHA : 74- 121: ivglr YiDWlv-TtPILVgyVGyAAgaSrrsIigVMvaDaLMiAvGaGAVVTdG tlkwa BACS_HALSS : 75- 122: lvglr YvDWivtT-PLLVgfIGyVAgaSrraIagVMlaDaLMiAfGaGAVVTgG tlkwv BACS_HALSS : 75- 122: lvglr YvDWiv-TtPLLVgfIGyVAgaSrraIagVMlaDaLMiAfGaGAVVTgG tlkwv BACT_NATPH : 73- 120: vfapr YiDWiltT-PLIVyfLGlLAglDsreFgiVItlNtVVmLaGfAGAMVpG ierya BACT_NATPH : 73- 120: vfapr YiDWil-TtPLIVyfLGlLAglDsreFgiVItlNtVVmLaGfAGAMVpG ierya D 4: 46.4013 13( 13) W-x-[AGIV]-Y-P-[FILV]-x-W-[AIL]-[FILMV]-G-x(2)-G-[AILV]-[AG]-x(4)-[AGNTV]-[GIV]-x-[ASTV] Occurences: 13(13) BAC1_HALS1 : 194- 217: lvlvl WtAYPIlWIIGteGAGvvglGIeT llfmv BAC2_HALS2 : 193- 216: lvavl WtAYPIlWIVGteGAGvvglGIeT lafmv BACH_HALHM : 177- 200: ltvvl WlGYPIfWALGaeGLAvldiAItS waysg BACH_HALSP : 207- 230: ltvvl WlGYPIvWAVGveGLAlvqsVGvT sways BACH_HALSS : 212- 235: ltvvl WlGYPIfWALGaeGLAvldvAItS waysg BACH_NATPH : 222- 245: ltvvm WlGYPIvWALGveGIAvlpvGVtS wgysf BACR_HALHA : 195- 218: vtvvl WsAYPVvWLIGseGAGivplNIeT llfmv BACR_HALHM : 171- 194: lvavl WtAYPIlWIIGteGAGvvglGVeT lafmv BACR_HALHP : 178- 201: lvtvv WlVYPVwWLIGteGIGlvgiGIeT agfmv BACR_HALHS : 176- 199: lvtvv WlVYPVwWLVGseGLGlvgiGIeT agfmv BACS_HALHA : 171- 194: higll WlAYPLvWLFGpaGIGeataAGvA ltyvf BACS_HALSS : 172- 195: hvgll WlAYPFvWLMGpaGIGfttgVGaA ltyaf BACT_NATPH : 171- 194: ltvil WaIYPFiWLLGppGVAlltpTVdV alivy E 5: 43.7379 13( 13) R-Y-x-[DT]-W-[AIL]-[FLV]-[ST]-T-x(1,3)-L-[ILV]-[AGLV]-x(2)-[AGL]-x-[ALV]-x-[AGSV] Occurences: 13(13) BAC1_HALS1 : 94- 113: diyya RYaDWLFTTp--LLLldLaLlA kvdrv BAC2_HALS2 : 93- 112: diyya RYaDWLFTTp--LLLldLaLlA kvdrv BACH_HALHM : 78- 99: ftpwg RYlTWAFSTpmiLIAlgLlAgS nmskl BACH_HALSP : 108- 129: rsqwg RYlTWALSTpmiLLAlgLlAdV dlgsl BACH_HALSS : 113- 134: ltpwg RYlTWALSTpmiLIAvgLlAgS nttkl BACH_NATPH : 123- 144: vtmwg RYlTWALSTpmiLLAlgLlAgS natkl BACR_HALHA : 95- 114: piywa RYaDWLFTTp--LLLldLaLlV dadqg BACR_HALHM : 71- 90: eiyya RYaDWLFTTp--LLLldLaLlA nadrt BACR_HALHP : 72- 91: piywa RYsDWLFTTp--LLLydLgLlA gadrn BACR_HALHS : 70- 89: piywa RYtDWLFTTp--LLLydLgLlA gadrn BACS_HALHA : 73- 93: qivgl RYiDWLVTTpi-LVGyvGyAaG asrrs BACS_HALSS : 74- 94: elvgl RYvDWIVTTpl-LVGfiGyVaG asrra BACT_NATPH : 72- 91: tvfap RYiDWILTTp--LIVyfLgLlA gldsr F 6: 43.1590 18( 13) L-x(1,3)-Y-P-[FILV]-x-W-[AIL]-[FILMV]-G-x(2)-G-[AILV]-[AG]-x(4)-[AGNTV]-[GIV]-x-[ASTV] Occurences: 18(13) BAC1_HALS1 : 193- 217: alvlv LwtaYPIlWIIGteGAGvvglGIeT llfmv BAC2_HALS2 : 192- 216: alvav LwtaYPIlWIVGteGAGvvglGIeT lafmv BACH_HALHM : 176- 200: vltvv LwlgYPIfWALGaeGLAvldiAItS waysg BACH_HALHM : 178- 200: tvvlw Lg--YPIfWALGaeGLAvldiAItS waysg BACH_HALSP : 206- 230: vltvv LwlgYPIvWAVGveGLAlvqsVGvT sways BACH_HALSP : 208- 230: tvvlw Lg--YPIvWAVGveGLAlvqsVGvT sways BACH_HALSS : 211- 235: vltvv LwlgYPIfWALGaeGLAvldvAItS waysg BACH_HALSS : 213- 235: tvvlw Lg--YPIfWALGaeGLAvldvAItS waysg BACH_NATPH : 223- 245: tvvmw Lg--YPIvWALGveGIAvlpvGVtS wgysf BACR_HALHA : 194- 218: nvtvv LwsaYPVvWLIGseGAGivplNIeT llfmv BACR_HALHM : 170- 194: alvav LwtaYPIlWIIGteGAGvvglGVeT lafmv BACR_HALHP : 179- 201: vtvvw Lv--YPVwWLIGteGIGlvgiGIeT agfmv BACR_HALHS : 177- 199: vtvvw Lv--YPVwWLVGseGLGlvgiGIeT agfmv BACS_HALHA : 170- 194: nhigl LwlaYPLvWLFGpaGIGeataAGvA ltyvf BACS_HALHA : 172- 194: igllw La--YPLvWLFGpaGIGeataAGvA ltyvf BACS_HALSS : 171- 195: nhvgl LwlaYPFvWLMGpaGIGfttgVGaA ltyaf BACS_HALSS : 173- 195: vgllw La--YPFvWLMGpaGIGfttgVGaA ltyaf BACT_NATPH : 170- 194: nltvi LwaiYPFiWLLGppGVAlltpTVdV alivy G 7: 39.9889 13( 13) Y-P-[FILV]-x-W-[AIL]-[FILMV]-G-x(2)-G-[AILV]-[AG]-x(4)-[AGNTV]-[GIV]-x-[ASTV] Occurences: 13(13) BAC1_HALS1 : 197- 217: vlwta YPIlWIIGteGAGvvglGIeT llfmv BAC2_HALS2 : 196- 216: vlwta YPIlWIVGteGAGvvglGIeT lafmv BACH_HALHM : 180- 200: vlwlg YPIfWALGaeGLAvldiAItS waysg BACH_HALSP : 210- 230: vlwlg YPIvWAVGveGLAlvqsVGvT sways BACH_HALSS : 215- 235: vlwlg YPIfWALGaeGLAvldvAItS waysg BACH_NATPH : 225- 245: vmwlg YPIvWALGveGIAvlpvGVtS wgysf BACR_HALHA : 198- 218: vlwsa YPVvWLIGseGAGivplNIeT llfmv BACR_HALHM : 174- 194: vlwta YPIlWIIGteGAGvvglGVeT lafmv BACR_HALHP : 181- 201: vvwlv YPVwWLIGteGIGlvgiGIeT agfmv BACR_HALHS : 179- 199: vvwlv YPVwWLVGseGLGlvgiGIeT agfmv BACS_HALHA : 174- 194: llwla YPLvWLFGpaGIGeataAGvA ltyvf BACS_HALSS : 175- 195: llwla YPFvWLMGpaGIGfttgVGaA ltyaf BACT_NATPH : 174- 194: ilwai YPFiWLLGppGVAlltpTVdV alivy H 8: 39.5678 13( 13) Y-x-[DT]-W-[AIL]-[FLV]-[ST]-T-x(1,3)-L-[ILV]-[AGLV]-x(2)-[AGL]-x-[ALV]-x-[AGSV] Occurences: 13(13) BAC1_HALS1 : 95- 113: iyyar YaDWLFTTp--LLLldLaLlA kvdrv BAC2_HALS2 : 94- 112: iyyar YaDWLFTTp--LLLldLaLlA kvdrv BACH_HALHM : 79- 99: tpwgr YlTWAFSTpmiLIAlgLlAgS nmskl BACH_HALSP : 109- 129: sqwgr YlTWALSTpmiLLAlgLlAdV dlgsl BACH_HALSS : 114- 134: tpwgr YlTWALSTpmiLIAvgLlAgS nttkl BACH_NATPH : 124- 144: tmwgr YlTWALSTpmiLLAlgLlAgS natkl BACR_HALHA : 96- 114: iywar YaDWLFTTp--LLLldLaLlV dadqg BACR_HALHM : 72- 90: iyyar YaDWLFTTp--LLLldLaLlA nadrt BACR_HALHP : 73- 91: iywar YsDWLFTTp--LLLydLgLlA gadrn BACR_HALHS : 71- 89: iywar YtDWLFTTp--LLLydLgLlA gadrn BACS_HALHA : 74- 93: ivglr YiDWLVTTpi-LVGyvGyAaG asrrs BACS_HALSS : 75- 94: lvglr YvDWIVTTpl-LVGfiGyVaG asrra BACT_NATPH : 73- 91: vfapr YiDWILTTp--LIVyfLgLlA gldsr I 9: 36.3889 13( 13) W-[AIL]-[FLV]-[ST]-T-P-x(0,2)-L-[ILV]-[AGLV]-x(2)-[AGL]-x-[ALV]-x-[AGSV] Occurences: 13(13) BAC1_HALS1 : 98- 113: aryad WLFTTP--LLLldLaLlA kvdrv BAC2_HALS2 : 97- 112: aryad WLFTTP--LLLldLaLlA kvdrv BACH_HALHM : 82- 99: grylt WAFSTPmiLIAlgLlAgS nmskl BACH_HALSP : 112- 129: grylt WALSTPmiLLAlgLlAdV dlgsl BACH_HALSS : 117- 134: grylt WALSTPmiLIAvgLlAgS nttkl BACH_NATPH : 127- 144: grylt WALSTPmiLLAlgLlAgS natkl BACR_HALHA : 99- 114: aryad WLFTTP--LLLldLaLlV dadqg BACR_HALHM : 75- 90: aryad WLFTTP--LLLldLaLlA nadrt BACR_HALHP : 76- 91: arysd WLFTTP--LLLydLgLlA gadrn BACR_HALHS : 74- 89: arytd WLFTTP--LLLydLgLlA gadrn BACS_HALHA : 77- 93: lryid WLVTTPi-LVGyvGyAaG asrrs BACS_HALSS : 78- 94: lryvd WIVTTPl-LVGfiGyVaG asrra BACT_NATPH : 76- 91: pryid WILTTP--LIVyfLgLlA gldsr J 10: 35.8189 13( 13) P-[FILV]-x-W-[AIL]-[FILMV]-G-x(2)-G-[AILV]-[AG]-x(4)-[AGNTV]-[GIV]-x-[ASTV] Occurences: 13(13) BAC1_HALS1 : 198- 217: lwtay PIlWIIGteGAGvvglGIeT llfmv BAC2_HALS2 : 197- 216: lwtay PIlWIVGteGAGvvglGIeT lafmv BACH_HALHM : 181- 200: lwlgy PIfWALGaeGLAvldiAItS waysg BACH_HALSP : 211- 230: lwlgy PIvWAVGveGLAlvqsVGvT sways BACH_HALSS : 216- 235: lwlgy PIfWALGaeGLAvldvAItS waysg BACH_NATPH : 226- 245: mwlgy PIvWALGveGIAvlpvGVtS wgysf BACR_HALHA : 199- 218: lwsay PVvWLIGseGAGivplNIeT llfmv BACR_HALHM : 175- 194: lwtay PIlWIIGteGAGvvglGVeT lafmv BACR_HALHP : 182- 201: vwlvy PVwWLIGteGIGlvgiGIeT agfmv BACR_HALHS : 180- 199: vwlvy PVwWLVGseGLGlvgiGIeT agfmv BACS_HALHA : 175- 194: lwlay PLvWLFGpaGIGeataAGvA ltyvf BACS_HALSS : 176- 195: lwlay PFvWLMGpaGIGfttgVGaA ltyaf BACT_NATPH : 175- 194: lwaiy PFiWLLGppGVAlltpTVdV alivy K 11: 29.3923 13( 13) W-[AIL]-[FILMV]-G-x(2)-G-[AILV]-[AG]-x(4)-[AGNTV]-[GIV]-x-[ASTV] Occurences: 13(13) BAC1_HALS1 : 201- 217: aypil WIIGteGAGvvglGIeT llfmv BAC2_HALS2 : 200- 216: aypil WIVGteGAGvvglGIeT lafmv BACH_HALHM : 184- 200: gypif WALGaeGLAvldiAItS waysg BACH_HALSP : 214- 230: gypiv WAVGveGLAlvqsVGvT sways BACH_HALSS : 219- 235: gypif WALGaeGLAvldvAItS waysg BACH_NATPH : 229- 245: gypiv WALGveGIAvlpvGVtS wgysf BACR_HALHA : 202- 218: aypvv WLIGseGAGivplNIeT llfmv BACR_HALHM : 178- 194: aypil WIIGteGAGvvglGVeT lafmv BACR_HALHP : 185- 201: vypvw WLIGteGIGlvgiGIeT agfmv BACR_HALHS : 183- 199: vypvw WLVGseGLGlvgiGIeT agfmv BACS_HALHA : 178- 194: ayplv WLFGpaGIGeataAGvA ltyvf BACS_HALSS : 179- 195: aypfv WLMGpaGIGfttgVGaA ltyaf BACT_NATPH : 178- 194: iypfi WLLGppGVAlltpTVdV alivy L 12: 27.3894 13( 13) V-x(2,3)-W-x-[AGILV]-Y-x(4)-[AGIL]-x-[GP]-x(2)-[GS]-[AILV]-[AGL] Occurences: 13(13) BAC1_HALS1 : 190- 209: tltal VlvlWtAYpilwIiGteGAG vvglg BAC2_HALS2 : 189- 208: tltal VavlWtAYpilwIvGteGAG vvglg BACH_HALHM : 174- 192: lkvlt Vvl-WlGYpifwAlGaeGLA vldia BACH_HALSP : 204- 222: lrvlt Vvl-WlGYpivwAvGveGLA lvqsv BACH_HALSS : 209- 227: lkvlt Vvl-WlGYpifwAlGaeGLA vldva BACH_NATPH : 219- 237: lkllt Vvm-WlGYpivwAlGveGIA vlpvg BACR_HALHA : 192- 210: lrnvt Vvl-WsAYpvvwLiGseGAG ivpln BACR_HALHM : 167- 186: tltal VavlWtAYpilwIiGteGAG vvglg BACR_HALHP : 174- 193: tlrnl VtvvWlVYpvwwLiGteGIG lvgig BACR_HALHS : 172- 191: tlrnl VtvvWlVYpvwwLvGseGLG lvgig BACS_HALHA : 19- 38: alivg VafvWlLYrsldGsPhqSAL aplai BACS_HALSS : 168- 187: llknh VgllWlAYpfvwLmGpaGIG fttgv BACT_NATPH : 168- 186: lrnlt Vil-WaIYpfiwLlGppGVA lltpt M 13: 16.0998 24( 13) L-x(4)-L-x(0,2)-L-x(0,2)-A-x(2)-[ADGNPST] Occurences: 24(13) BAC1_HALS1 : 99- 113: ryadw LfttpLllLdlAllA kvdrv BAC1_HALS1 : 104- 116: lfttp LllldLalL--AkvD rvsig BAC1_HALS1 : 104- 116: lfttp LllldLa-Ll-AkvD rvsig BAC1_HALS1 : 106- 116: ttpll LldlaL--L--AkvD rvsig BAC2_HALS2 : 98- 112: ryadw LfttpLllLdlAllA kvdrv BAC2_HALS2 : 103- 115: lfttp LllldLalL--AkvD rvtig BAC2_HALS2 : 103- 115: lfttp LllldLa-Ll-AkvD rvtig BAC2_HALS2 : 105- 115: ttpll LldlaL--L--AkvD rvtig BACH_HALHM : 90- 100: stpmi LialgL--L--AgsN msklf BACH_HALHM : 186- 200: pifwa LgaegLavLdiAitS waysg BACH_HALSP : 120- 130: stpmi LlalgL--L--AdvD lgslf BACH_HALSS : 125- 135: stpmi LiavgL--L--AgsN ttklf BACH_HALSS : 221- 235: pifwa LgaegLavLdvAitS waysg BACH_NATPH : 135- 145: stpmi LlalgL--L--AgsN atklf BACR_HALHA : 105- 119: lfttp LllldLalLvdAdqG tilal BACR_HALHA : 107- 119: ttpll LldlaL--LvdAdqG tilal BACR_HALHM : 76- 90: ryadw LfttpLllLdlAllA nadrt BACR_HALHM : 81- 93: lfttp LllldLalL--AnaD rttig BACR_HALHM : 81- 93: lfttp LllldLa-Ll-AnaD rttig BACR_HALHM : 81- 95: lfttp LllldLalLanAdrT tigtl BACR_HALHM : 83- 93: ttpll LldlaL--L--AnaD rttig BACR_HALHM : 83- 95: ttpll LldlaL--LanAdrT tigtl BACR_HALHP : 82- 94: lfttp LllydLglL--AgaD rntit BACR_HALHP : 82- 94: lfttp LllydLg-Ll-AgaD rntit BACR_HALHP : 82- 96: lfttp LllydLglLagAdrN titsl BACR_HALHP : 84- 94: ttpll LydlgL--L--AgaD rntit BACR_HALHP : 84- 96: ttpll LydlgL--LagAdrN titsl BACR_HALHS : 80- 92: lfttp LllydLglL--AgaD rntiy BACR_HALHS : 80- 92: lfttp LllydLg-Ll-AgaD rntiy BACR_HALHS : 80- 94: lfttp LllydLglLagAdrN tiysl BACR_HALHS : 82- 92: ttpll LydlgL--L--AgaD rntiy BACR_HALHS : 82- 94: ttpll LydlgL--LagAdrN tiysl BACS_HALHA : 195- 207: aagva LtyvfLdvL--AkvP yvyff BACS_HALSS : 196- 208: gvgaa LtyafLdvL--AkvP yvyff BACT_NATPH : 82- 94: ilttp LivyfLglL--AglD srefg BACT_NATPH : 82- 94: ilttp LivyfLg-Ll-AglD srefg N 14: 14.6802 17( 13) L-x(3,5)-V-x(0,2)-L-x(3)-A Occurences: 17(13) BAC1_HALS1 : 218- 227: lgiet Llfm--V--LdvtA kvgfg BAC2_HALS2 : 217- 226: lgiet Lafm--V--LdvtA kvgfg BACH_HALHM : 44- 57: ssytg LvsgltVgfLempA ghala BACH_HALSP : 33- 43: llsss Lwvn--Va-LagiA ilvfv BACH_HALSS : 85- 98: ssytg LvsgltVsfLempA ghala BACH_NATPH : 89- 98: glasg Ltis--V--LempA ghfae BACR_HALHA : 219- 228: lniet Llfm--V--LdvsA kvgfg BACR_HALHM : 138- 149: aflfv LyylltV--LrsaA aelse BACR_HALHM : 195- 204: lgvet Lafm--V--LdvtA BACR_HALHP : 117- 128: glvat LsagsgV--LsagA erlvw BACR_HALHS : 115- 126: gvvat LsagsgV--LsagA erlvw BACS_HALHA : 172- 183: igllw Laypl-Vw-LfgpA gigea BACS_HALSS : 163- 174: rglfs Llknh-Vg-LlwlA ypfvw BACS_HALSS : 164- 174: glfsl Lknh--Vg-LlwlA ypfvw BACS_HALSS : 173- 184: vgllw Laypf-Vw-LmgpA gigft BACT_NATPH : 78- 91: yidwi LttpliVyfLgllA gldsr BACT_NATPH : 104- 114: givit Lntv--Vm-LagfA gamvp O 15: 12.0102 21( 13) V-x(3)-G-x(4,5)-A Occurences: 21(13) BAC1_HALS1 : 41- 51: tfyfi VkgwGvtdkeA reyys BAC2_HALS2 : 209- 218: tegag VvglGietl-A fmvld BACH_HALHM : 175- 185: kvltv VlwlGypifwA lgaeg BACH_HALSP : 205- 215: rvltv VlwlGypivwA vgveg BACH_HALSP : 213- 222: lgypi VwavGvegl-A lvqsv BACH_HALSP : 224- 233: eglal VqsvGvtsw-A ysvld BACH_HALSS : 210- 220: kvltv VlwlGypifwA lgaeg BACH_NATPH : 118- 128: evdgv VtmwGryltwA lstpm BACH_NATPH : 220- 230: klltv VmwlGypivwA lgveg BACH_NATPH : 228- 237: lgypi VwalGvegi-A vlpvg BACR_HALHA : 42- 52: tlyfl VkgmGvsdpdA kkfya BACR_HALHA : 164- 173: lyily VlffGftsk-A esmrp BACR_HALHM : 187- 196: tegag VvglGvetl-A fmvld BACR_HALHP : 106- 115: lvsld VlmiGtglv-A tlsag BACR_HALHS : 104- 113: lvsld VlmiGtgvv-A tlsag BACS_HALHA : 85- 94: ttpil VgyvGyaag-A srrsi BACS_HALHA : 117- 126: vgaga VvtdGtlkw-A lfgvs BACS_HALSS : 86- 95: ttpll VgfiGyvag-A srrai BACT_NATPH : 38- 47: erryy VtlvGisgi-A avayv BACT_NATPH : 38- 48: erryy VtlvGisgiaA vayvv BACT_NATPH : 41- 50: yyvtl VgisGiaav-A yvvma BACT_NATPH : 203- 212: vyldl VtkvGfgfi-A ldaaa P 16: 12.0102 17( 13) A-x(1,2)-V-x(2)-L Occurences: 17(13) BAC1_HALS1 : 188- 193: fntlt Al-VlvL wtayp BAC1_HALS1 : 208- 213: igteg Ag-VvgL gietl BAC2_HALS2 : 187- 192: fntlt Al-VavL wtayp BAC2_HALS2 : 207- 212: vgteg Ag-VvgL gietl BACH_HALHM : 140- 146: ygisc AffVvvL yilla BACH_HALSP : 170- 176: yaisc AffVvvL salvt BACH_HALSP : 215- 221: ypivw AvgVegL alvqs BACH_HALSS : 175- 181: yaisc AffVvvL yilla BACH_NATPH : 158- 164: itfdi AmcVtgL aaalt BACR_HALHA : 197- 203: vvlws AypVvwL igseg BACR_HALHM : 165- 170: fntlt Al-VavL wtayp BACR_HALHM : 185- 190: igteg Ag-VvgL gvetl BACR_HALHP : 43- 48: litai Af-VnyL amalg BACR_HALHS : 41- 46: litai Af-VnyL amalg BACS_HALHA : 20- 25: livgv Af-VwlL yrsld BACS_HALSS : 12- 17: aaywi Aa-VafL vglgi BACT_NATPH : 50- 56: giaav AyvVmaL gvgwv Q 17: 12.0102 22( 13) A-x(2,3)-V-x-L Occurences: 22(13) BAC1_HALS1 : 208- 213: igteg Agv-VgL gietl BAC2_HALS2 : 207- 212: vgteg Agv-VgL gietl BACH_HALHM : 29- 35: qlifv AtlmVpL vsiss BACH_HALHM : 140- 146: ygisc AffvVvL yilla BACH_HALSP : 170- 176: yaisc AffvVvL salvt BACH_HALSS : 11- 17: aadil AggmVpL emtqt BACH_HALSS : 70- 76: qlifv AtlmVpL vsiss BACH_HALSS : 175- 181: yaisc AffvVvL yilla BACH_NATPH : 185- 191: yaisc AcflVvL yillv BACR_HALHA : 197- 203: vvlws AypvVwL igseg BACR_HALHA : 209- 214: igseg Agi-VpL nietl BACR_HALHM : 185- 190: igteg Agv-VgL gvetl BACR_HALHP : 139- 145: wgist AfllVlL yflfs BACR_HALHS : 137- 143: wgist AfllVlL yflfs BACS_HALHA : 173- 179: gllwl AyplVwL fgpag BACS_HALHA : 190- 195: igeat Aag-VaL tyvfl BACS_HALHA : 194- 200: taagv AltyVfL dvlak BACS_HALSS : 15- 20: wiaav Afl-VgL gitaa BACS_HALSS : 68- 73: vtvng Ael-VgL ryvdw BACS_HALSS : 99- 105: gasrr AiagVmL adalm BACS_HALSS : 174- 180: gllwl AypfVwL mgpag BACT_NATPH : 195- 200: ptvdv Ali-VyL dlvtk R 18: 12.0102 16( 13) G-x(3,4)-G-L Occurences: 16(13) BAC1_HALS1 : 207- 213: iigte GagvvGL gietl BAC2_HALS2 : 206- 212: ivgte GagvvGL gietl BACH_HALHM : 43- 48: issyt Glvs-GL tvgfl BACH_HALHM : 113- 119: vvadv GmcitGL aaalt BACH_HALSP : 79- 84: issyl Glls-GL tvgmi BACH_HALSP : 143- 149: iaadi GmcvtGL aaamt BACH_HALSS : 84- 89: issyt Glvs-GL tvsfl BACH_HALSS : 148- 154: vvadi GmcvtGL aaalt BACH_NATPH : 84- 89: iasyt Glas-GL tisvl BACR_HALHA : 29- 35: iwlal GtalmGL gtlyf BACR_HALHM : 184- 190: iigte GagvvGL gvetl BACR_HALHP : 188- 194: vwwli GtegiGL vgigi BACR_HALHS : 186- 192: vwwlv GseglGL vgigi BACS_HALHA : 66- 72: tvivn GnqivGL ryidw BACS_HALSS : 67- 73: tvtvn GaelvGL ryvdw BACT_NATPH : 88- 93: ivyfl Glla-GL dsref S 19: 12.0102 24( 13) G-x(2,3)-A-G Occurences: 24(13) BAC1_HALS1 : 204- 209: ilwii GtegAG vvglg BAC2_HALS2 : 203- 208: ilwiv GtegAG vvglg BACH_HALHM : 58- 63: lempa GhalAG mgagp BACH_HALHM : 63- 67: ghala Gmg-AG peggv BACH_HALHM : 94- 98: ilial Gll-AG snmsk BACH_HALSP : 8- 13: itsvp GvvdAG vlgaq BACH_HALSP : 94- 99: iempa GhalAG emvrs BACH_HALSS : 99- 104: lempa GhalAG qevlt BACH_HALSS : 129- 133: iliav Gll-AG snttk BACH_NATPH : 139- 143: illal Gll-AG snatk BACR_HALHA : 205- 210: vvwli GsegAG ivpln BACR_HALHM : 181- 186: ilwii GtegAG vvglg BACR_HALHP : 88- 92: llydl Gll-AG adrnt BACR_HALHP : 122- 127: lsags GvlsAG aerlv BACR_HALHP : 198- 203: glvgi GietAG fmvid BACR_HALHS : 86- 90: llydl Gll-AG adrnt BACR_HALHS : 120- 125: lsags GvlsAG aerlv BACR_HALHS : 196- 201: glvgi GietAG fmvid BACS_HALHA : 89- 93: lvgyv Gya-AG asrrs BACS_HALSS : 50- 55: ipgfa GlayAG malgi BACS_HALSS : 90- 94: lvgfi Gyv-AG asrra BACT_NATPH : 26- 30: afawa Grd-AG sgerr BACT_NATPH : 88- 92: ivyfl Gll-AG ldsre BACT_NATPH : 224- 229: lraeh GeslAG vdtda T 20: 12.0102 16( 13) A-L-x(2,3)-L Occurences: 16(13) BAC1_HALS1 : 188- 193: fntlt ALvlvL wtayp BAC2_HALS2 : 187- 192: fntlt ALvavL wtayp BACH_HALHM : 2- 6: i ALag-L sillf BACH_HALHM : 92- 96: pmili ALgl-L agsnm BACH_HALSP : 122- 126: pmill ALgl-L advdl BACH_HALSS : 43- 47: lwini ALag-L sillf BACH_NATPH : 43- 47: lyini ALag-L sillf BACH_NATPH : 137- 141: pmill ALgl-L agsna BACR_HALHA : 27- 32: ewiwl ALgtaL mglgt BACR_HALHA : 31- 35: lalgt ALmg-L gtlyf BACR_HALHM : 165- 170: fntlt ALvavL wtayp BACR_HALHP : 51- 56: nylam ALgfgL tivef BACR_HALHS : 49- 54: nylam ALgfgL tfief BACS_HALHA : 37- 41: sphqs ALap-L aiipv BACS_HALSS : 25- 30: lgita ALyakL gesed BACT_NATPH : 195- 200: ptvdv ALivyL dlvtk Number of patterns evaluated by Pratt:3559 Total running time: 3 seconds