------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file ASPARTOKINASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ASPARTOKINASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AK1H_ECOLI 820 AK1H_SERMA 819 AK1_BACSU 404 AK2H_ECOLI 809 AK2_BACSU 408 AK3_ECOLI 449 AKAB_CORFL 421 AKAB_CORGL 421 AKAB_MYCSM 421 AKH_DAUCA 921 AKH_HAEIN 815 AK_YEAST 527 Pratt run started at Thu Feb 6 18:54:00 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 29.1904 12( 12) V-x-G-x(4)-D-P-R-x-V-x(2)-A 2: 28.6904 12( 12) V-x-G-x(3,4)-D-P-R-x-V-x(2)-A 3: 28.6904 12( 12) V-x(0,1)-G-x(4)-D-P-R-x-V-x(2)-A 4: 28.1904 12( 12) V-x-G-x(4)-D-P-R-x(0,1)-V-x(2,3)-A 5: 28.1904 12( 12) V-x(0,1)-G-x(3,4)-D-P-R-x-V-x(2)-A 6: 25.0203 12( 12) G-x(4)-D-P-R-x-V-x(2)-A 7: 24.5203 12( 12) G-x(3,4)-D-P-R-x-V-x(2)-A 8: 24.0203 12( 12) G-x(4)-D-P-R-x(0,1)-V-x(2,3)-A 9: 20.8503 14( 12) G-x(5)-P-R-x-V-x(2)-A 10: 19.8503 12( 12) D-P-R-x(0,1)-V-x(2,3)-A 11: 19.8503 15( 12) G-x(1,2)-T-x(1,2)-D-P-R 12: 16.6802 14( 12) P-R-x-V-x(2)-A 13: 16.1802 15( 12) T-x(1,2)-D-P-R 14: 16.1802 13( 12) R-x(3)-D-x(2)-A-x(4,5)-A 15: 15.6802 14( 12) P-R-x(0,1)-V-x(2,3)-A 16: 15.6802 12( 12) D-x(3)-V-x(2)-A-x(0,2)-R 17: 15.6802 12( 12) I-x(2,3)-V-x(1,2)-G-x(5)-P 18: 15.6802 24( 12) A-x(0,1)-A-x(0,1)-L-x-A 19: 15.6802 13( 12) S-D-x(2,3)-A-x(4,5)-A 20: 15.6802 20( 12) G-x(1,2)-D-x(2)-A-x(0,1)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 83.9734 12( 12) G-[IV]-x-[ST]-[ACT]-D-P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV]-[DP] B 2: 81.0655 12( 12) G-[IV]-x-[ST]-[ACT]-D-P-R-x(0,1)-V-x(2,3)-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV]-[DP] C 3: 78.8396 12( 12) V-x-G-[IV]-x-[ST]-[ACT]-D-P-R-x(0,1)-V-x(2,3)-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV] D 4: 75.6147 12( 12) V-x-G-x(2)-[ST]-[ACT]-D-P-R-x(0,1)-V-x(2,3)-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV] E 5: 74.8872 12( 12) V-x(0,1)-G-x(3,4)-D-P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV] F 6: 74.3883 12( 12) G-x(3,4)-D-P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV]-[DP] G 7: 73.1311 12( 12) D-P-R-x(0,1)-V-x(2,3)-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV]-[DP]-x(2)-[ILV]-x-[CNS] H 8: 72.6624 12( 12) V-x-G-x(4)-D-P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV] I 9: 72.4393 12( 12) V-x-G-x(3)-[ACT]-D-P-R-x(0,1)-V-x(2,3)-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV] J 10: 72.1624 12( 12) V-x-G-x(3,4)-D-P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV] K 11: 72.1624 12( 12) V-x(0,1)-G-x(4)-D-P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV] L 12: 71.8690 12( 12) P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV]-[DP]-x(2)-[ILV]-x-[CNS] M 13: 71.7172 12( 12) G-x(4)-D-P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV] N 14: 69.7544 12( 12) V-x-G-x(4)-D-P-R-x(0,1)-V-x(2,3)-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV] O 15: 68.9611 12( 12) P-R-x(0,1)-V-x(2,3)-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV]-[DP]-x(2)-[ILV]-x-[CNS] P 16: 32.3703 12( 12) I-x(2,3)-V-x(1,2)-G-[FIV]-x-[GST]-x-[DV]-P-x(2)-[LV]-x-[ADENS]-[AG] Q 17: 30.7787 15( 12) G-x(1,2)-T-x(1,2)-D-P-R-x-[DV]-x-[ADENS]-[AG]-x(2)-[ILV] R 18: 27.1087 15( 12) T-x(1,2)-D-P-R-x-[DV]-x-[ADENS]-[AG]-x(2)-[ILV] S 19: 26.8804 12( 12) R-[DGN]-x-[ST]-D-x-[CST]-A-x(4,5)-A-x(3)-[ADSV] T 20: 20.9190 18( 12) G-x(1,2)-D-x-[CST]-A-x(0,1)-A-x(2)-[AGS] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 83.9734 12( 12) G-[IV]-x-[ST]-[ACT]-D-P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV]-[DP] Occurences: 12(12) AK1H_ECOLI : 231- 279: wtdvn GVyTCDPRqVpDArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqIP clikn AK1H_SERMA : 231- 279: wtdvd GVyTCDPRtVpDArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqIP clikn AK1_BACSU : 182- 230: ftdve GVmTADPRvVeNAkpLpvVtytEicNLAyqGAkVIsPrAVeiAmqakVP irvrs AK2H_ECOLI : 233- 281: wsdva GVySADPRkVkDAclLplLrldEasELArlAApVLhArTLqpVsgseID lqlrc AK2_BACSU : 177- 225: ytdvp GVfTTDPRyVkSArkLegIsydEmlELAnlGAgVLhPrAVefAknyqVP levrs AK3_ECOLI : 225- 273: wtdvp GIyTTDPRvVsAAkrIdeIafaEaaEMAtfGAkVLhPaTLlpAvrsdIP vfvgs AKAB_CORFL : 178- 226: ysdvd GVyTADPRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyArafnVP lrvrs AKAB_CORGL : 178- 226: ysdvd GVyTADPRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyArafnVP lrvrs AKAB_MYCSM : 178- 226: ytdvd GIfTADPRiVpNArhLdtVsfeEmlEMAacGAkVLmLrCVeyArrynVP ihvrs AKH_DAUCA : 321- 369: wtdvn GVySADPRkVsEAvvLktLsyqEawEMSyfGAnVLhPrTInpVmrydIP ivirn AKH_HAEIN : 231- 279: wtdvd GVyTCDPRlVpDArlLptLsyrEamELSyfGAkVIhPrTIgpLlpqnIP cvikn AK_YEAST : 257- 305: wkevd GIfTADPRkVpEArlLdsVtpeEasELTyyGSeVIhPfTMeqVirakIP irikn B 2: 81.0655 12( 12) G-[IV]-x-[ST]-[ACT]-D-P-R-x(0,1)-V-x(2,3)-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV]-[DP] Occurences: 12(12) AK1H_ECOLI : 231- 279: wtdvn GVyTCDPRqVpd-ArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqIP clikn AK1H_SERMA : 231- 279: wtdvd GVyTCDPRtVpd-ArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqIP clikn AK1_BACSU : 182- 230: ftdve GVmTADPRvVen-AkpLpvVtytEicNLAyqGAkVIsPrAVeiAmqakVP irvrs AK1_BACSU : 182- 230: ftdve GVmTADPR-VvenAkpLpvVtytEicNLAyqGAkVIsPrAVeiAmqakVP irvrs AK2H_ECOLI : 233- 281: wsdva GVySADPRkVkd-AclLplLrldEasELArlAApVLhArTLqpVsgseID lqlrc AK2_BACSU : 177- 225: ytdvp GVfTTDPRyVks-ArkLegIsydEmlELAnlGAgVLhPrAVefAknyqVP levrs AK3_ECOLI : 225- 273: wtdvp GIyTTDPRvVsa-AkrIdeIafaEaaEMAtfGAkVLhPaTLlpAvrsdIP vfvgs AK3_ECOLI : 225- 273: wtdvp GIyTTDPR-VvsaAkrIdeIafaEaaEMAtfGAkVLhPaTLlpAvrsdIP vfvgs AKAB_CORFL : 178- 226: ysdvd GVyTADPRiVpn-AqkLekLsfeEmlELAavGSkILvLrSVeyArafnVP lrvrs AKAB_CORGL : 178- 226: ysdvd GVyTADPRiVpn-AqkLekLsfeEmlELAavGSkILvLrSVeyArafnVP lrvrs AKAB_MYCSM : 178- 226: ytdvd GIfTADPRiVpn-ArhLdtVsfeEmlEMAacGAkVLmLrCVeyArrynVP ihvrs AKH_DAUCA : 321- 369: wtdvn GVySADPRkVse-AvvLktLsyqEawEMSyfGAnVLhPrTInpVmrydIP ivirn AKH_HAEIN : 231- 279: wtdvd GVyTCDPRlVpd-ArlLptLsyrEamELSyfGAkVIhPrTIgpLlpqnIP cvikn AK_YEAST : 257- 305: wkevd GIfTADPRkVpe-ArlLdsVtpeEasELTyyGSeVIhPfTMeqVirakIP irikn C 3: 78.8396 12( 12) V-x-G-[IV]-x-[ST]-[ACT]-D-P-R-x(0,1)-V-x(2,3)-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV] Occurences: 12(12) AK1H_ECOLI : 229- 273: eiwtd VnGVyTCDPRqVpd-ArlLksMsyqEamELSyfGAkVLhPrTItpI aqfqi AK1H_SERMA : 229- 273: eiwtd VdGVyTCDPRtVpd-ArlLksMsyqEamELSyfGAkVLhPrTItpI aqfqi AK1_BACSU : 180- 224: diftd VeGVmTADPRvVen-AkpLpvVtytEicNLAyqGAkVIsPrAVeiA mqakv AK1_BACSU : 180- 224: diftd VeGVmTADPR-VvenAkpLpvVtytEicNLAyqGAkVIsPrAVeiA mqakv AK2H_ECOLI : 231- 275: tiwsd VaGVySADPRkVkd-AclLplLrldEasELArlAApVLhArTLqpV sgsei AK2_BACSU : 175- 219: diytd VpGVfTTDPRyVks-ArkLegIsydEmlELAnlGAgVLhPrAVefA knyqv AK3_ECOLI : 223- 267: diwtd VpGIyTTDPRvVsa-AkrIdeIafaEaaEMAtfGAkVLhPaTLlpA vrsdi AK3_ECOLI : 223- 267: diwtd VpGIyTTDPR-VvsaAkrIdeIafaEaaEMAtfGAkVLhPaTLlpA vrsdi AKAB_CORFL : 176- 220: eiysd VdGVyTADPRiVpn-AqkLekLsfeEmlELAavGSkILvLrSVeyA rafnv AKAB_CORGL : 176- 220: eiysd VdGVyTADPRiVpn-AqkLekLsfeEmlELAavGSkILvLrSVeyA rafnv AKAB_MYCSM : 176- 220: eiytd VdGIfTADPRiVpn-ArhLdtVsfeEmlEMAacGAkVLmLrCVeyA rrynv AKH_DAUCA : 319- 363: tiwtd VnGVySADPRkVse-AvvLktLsyqEawEMSyfGAnVLhPrTInpV mrydi AKH_HAEIN : 229- 273: eiwtd VdGVyTCDPRlVpd-ArlLptLsyrEamELSyfGAkVIhPrTIgpL lpqni AK_YEAST : 255- 299: qvwke VdGIfTADPRkVpe-ArlLdsVtpeEasELTyyGSeVIhPfTMeqV iraki D 4: 75.6147 12( 12) V-x-G-x(2)-[ST]-[ACT]-D-P-R-x(0,1)-V-x(2,3)-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV] Occurences: 12(12) AK1H_ECOLI : 229- 273: eiwtd VnGvyTCDPRqVpd-ArlLksMsyqEamELSyfGAkVLhPrTItpI aqfqi AK1H_SERMA : 229- 273: eiwtd VdGvyTCDPRtVpd-ArlLksMsyqEamELSyfGAkVLhPrTItpI aqfqi AK1_BACSU : 180- 224: diftd VeGvmTADPRvVen-AkpLpvVtytEicNLAyqGAkVIsPrAVeiA mqakv AK1_BACSU : 180- 224: diftd VeGvmTADPR-VvenAkpLpvVtytEicNLAyqGAkVIsPrAVeiA mqakv AK2H_ECOLI : 231- 275: tiwsd VaGvySADPRkVkd-AclLplLrldEasELArlAApVLhArTLqpV sgsei AK2_BACSU : 175- 219: diytd VpGvfTTDPRyVks-ArkLegIsydEmlELAnlGAgVLhPrAVefA knyqv AK3_ECOLI : 223- 267: diwtd VpGiyTTDPRvVsa-AkrIdeIafaEaaEMAtfGAkVLhPaTLlpA vrsdi AK3_ECOLI : 223- 267: diwtd VpGiyTTDPR-VvsaAkrIdeIafaEaaEMAtfGAkVLhPaTLlpA vrsdi AKAB_CORFL : 176- 220: eiysd VdGvyTADPRiVpn-AqkLekLsfeEmlELAavGSkILvLrSVeyA rafnv AKAB_CORGL : 176- 220: eiysd VdGvyTADPRiVpn-AqkLekLsfeEmlELAavGSkILvLrSVeyA rafnv AKAB_MYCSM : 176- 220: eiytd VdGifTADPRiVpn-ArhLdtVsfeEmlEMAacGAkVLmLrCVeyA rrynv AKH_DAUCA : 319- 363: tiwtd VnGvySADPRkVse-AvvLktLsyqEawEMSyfGAnVLhPrTInpV mrydi AKH_HAEIN : 229- 273: eiwtd VdGvyTCDPRlVpd-ArlLptLsyrEamELSyfGAkVIhPrTIgpL lpqni AK_YEAST : 255- 299: qvwke VdGifTADPRkVpe-ArlLdsVtpeEasELTyyGSeVIhPfTMeqV iraki E 5: 74.8872 12( 12) V-x(0,1)-G-x(3,4)-D-P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV] Occurences: 12(12) AK1H_ECOLI : 229- 278: eiwtd VnGvytcDPRqVpDArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqI pclik AK1H_SERMA : 229- 278: eiwtd VdGvytcDPRtVpDArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqI pclik AK1_BACSU : 180- 229: diftd VeGvmtaDPRvVeNAkpLpvVtytEicNLAyqGAkVIsPrAVeiAmqakV pirvr AK2H_ECOLI : 231- 280: tiwsd VaGvysaDPRkVkDAclLplLrldEasELArlAApVLhArTLqpVsgseI dlqlr AK2_BACSU : 175- 224: diytd VpGvfttDPRyVkSArkLegIsydEmlELAnlGAgVLhPrAVefAknyqV plevr AK3_ECOLI : 223- 272: diwtd VpGiyttDPRvVsAAkrIdeIafaEaaEMAtfGAkVLhPaTLlpAvrsdI pvfvg AKAB_CORFL : 176- 225: eiysd VdGvytaDPRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyArafnV plrvr AKAB_CORGL : 176- 225: eiysd VdGvytaDPRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyArafnV plrvr AKAB_MYCSM : 176- 225: eiytd VdGiftaDPRiVpNArhLdtVsfeEmlEMAacGAkVLmLrCVeyArrynV pihvr AKH_DAUCA : 319- 368: tiwtd VnGvysaDPRkVsEAvvLktLsyqEawEMSyfGAnVLhPrTInpVmrydI pivir AKH_HAEIN : 229- 278: eiwtd VdGvytcDPRlVpDArlLptLsyrEamELSyfGAkVIhPrTIgpLlpqnI pcvik AK_YEAST : 255- 304: qvwke VdGiftaDPRkVpEArlLdsVtpeEasELTyyGSeVIhPfTMeqVirakI pirik F 6: 74.3883 12( 12) G-x(3,4)-D-P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV]-[DP] Occurences: 12(12) AK1H_ECOLI : 231- 279: wtdvn GvytcDPRqVpDArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqIP clikn AK1H_SERMA : 231- 279: wtdvd GvytcDPRtVpDArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqIP clikn AK1_BACSU : 182- 230: ftdve GvmtaDPRvVeNAkpLpvVtytEicNLAyqGAkVIsPrAVeiAmqakVP irvrs AK2H_ECOLI : 233- 281: wsdva GvysaDPRkVkDAclLplLrldEasELArlAApVLhArTLqpVsgseID lqlrc AK2_BACSU : 177- 225: ytdvp GvfttDPRyVkSArkLegIsydEmlELAnlGAgVLhPrAVefAknyqVP levrs AK3_ECOLI : 225- 273: wtdvp GiyttDPRvVsAAkrIdeIafaEaaEMAtfGAkVLhPaTLlpAvrsdIP vfvgs AKAB_CORFL : 178- 226: ysdvd GvytaDPRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyArafnVP lrvrs AKAB_CORGL : 178- 226: ysdvd GvytaDPRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyArafnVP lrvrs AKAB_MYCSM : 178- 226: ytdvd GiftaDPRiVpNArhLdtVsfeEmlEMAacGAkVLmLrCVeyArrynVP ihvrs AKH_DAUCA : 321- 369: wtdvn GvysaDPRkVsEAvvLktLsyqEawEMSyfGAnVLhPrTInpVmrydIP ivirn AKH_HAEIN : 231- 279: wtdvd GvytcDPRlVpDArlLptLsyrEamELSyfGAkVIhPrTIgpLlpqnIP cvikn AK_YEAST : 257- 305: wkevd GiftaDPRkVpEArlLdsVtpeEasELTyyGSeVIhPfTMeqVirakIP irikn G 7: 73.1311 12( 12) D-P-R-x(0,1)-V-x(2,3)-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV]-[DP]-x(2)-[ILV]-x-[CNS] Occurences: 12(12) AK1H_ECOLI : 236- 284: gvytc DPRqVpd-ArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqIPclIkN tgnpq AK1H_SERMA : 236- 284: gvytc DPRtVpd-ArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqIPclIkN tsnpq AK1_BACSU : 187- 235: gvmta DPRvVen-AkpLpvVtytEicNLAyqGAkVIsPrAVeiAmqakVPirVrS tysnd AK1_BACSU : 187- 235: gvmta DPR-VvenAkpLpvVtytEicNLAyqGAkVIsPrAVeiAmqakVPirVrS tysnd AK2H_ECOLI : 238- 286: gvysa DPRkVkd-AclLplLrldEasELArlAApVLhArTLqpVsgseIDlqLrC sytpd AK2_BACSU : 182- 230: gvftt DPRyVks-ArkLegIsydEmlELAnlGAgVLhPrAVefAknyqVPleVrS stete AK3_ECOLI : 230- 278: giytt DPRvVsa-AkrIdeIafaEaaEMAtfGAkVLhPaTLlpAvrsdIPvfVgS skdpr AK3_ECOLI : 230- 278: giytt DPR-VvsaAkrIdeIafaEaaEMAtfGAkVLhPaTLlpAvrsdIPvfVgS skdpr AKAB_CORFL : 183- 231: gvyta DPRiVpn-AqkLekLsfeEmlELAavGSkILvLrSVeyArafnVPlrVrS sysnd AKAB_CORGL : 183- 231: gvyta DPRiVpn-AqkLekLsfeEmlELAavGSkILvLrSVeyArafnVPlrVrS sysnd AKAB_MYCSM : 183- 231: gifta DPRiVpn-ArhLdtVsfeEmlEMAacGAkVLmLrCVeyArrynVPihVrS sysdk AKH_DAUCA : 326- 374: gvysa DPRkVse-AvvLktLsyqEawEMSyfGAnVLhPrTInpVmrydIPivIrN ifnls AKH_HAEIN : 236- 284: gvytc DPRlVpd-ArlLptLsyrEamELSyfGAkVIhPrTIgpLlpqnIPcvIkN tgnps AK_YEAST : 262- 310: gifta DPRkVpe-ArlLdsVtpeEasELTyyGSeVIhPfTMeqVirakIPirIkN vqnpl H 8: 72.6624 12( 12) V-x-G-x(4)-D-P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV] Occurences: 12(12) AK1H_ECOLI : 229- 273: eiwtd VnGvytcDPRqVpDArlLksMsyqEamELSyfGAkVLhPrTItpI aqfqi AK1H_SERMA : 229- 273: eiwtd VdGvytcDPRtVpDArlLksMsyqEamELSyfGAkVLhPrTItpI aqfqi AK1_BACSU : 180- 224: diftd VeGvmtaDPRvVeNAkpLpvVtytEicNLAyqGAkVIsPrAVeiA mqakv AK2H_ECOLI : 231- 275: tiwsd VaGvysaDPRkVkDAclLplLrldEasELArlAApVLhArTLqpV sgsei AK2_BACSU : 175- 219: diytd VpGvfttDPRyVkSArkLegIsydEmlELAnlGAgVLhPrAVefA knyqv AK3_ECOLI : 223- 267: diwtd VpGiyttDPRvVsAAkrIdeIafaEaaEMAtfGAkVLhPaTLlpA vrsdi AKAB_CORFL : 176- 220: eiysd VdGvytaDPRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyA rafnv AKAB_CORGL : 176- 220: eiysd VdGvytaDPRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyA rafnv AKAB_MYCSM : 176- 220: eiytd VdGiftaDPRiVpNArhLdtVsfeEmlEMAacGAkVLmLrCVeyA rrynv AKH_DAUCA : 319- 363: tiwtd VnGvysaDPRkVsEAvvLktLsyqEawEMSyfGAnVLhPrTInpV mrydi AKH_HAEIN : 229- 273: eiwtd VdGvytcDPRlVpDArlLptLsyrEamELSyfGAkVIhPrTIgpL lpqni AK_YEAST : 255- 299: qvwke VdGiftaDPRkVpEArlLdsVtpeEasELTyyGSeVIhPfTMeqV iraki I 9: 72.4393 12( 12) V-x-G-x(3)-[ACT]-D-P-R-x(0,1)-V-x(2,3)-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV] Occurences: 12(12) AK1H_ECOLI : 229- 273: eiwtd VnGvytCDPRqVpd-ArlLksMsyqEamELSyfGAkVLhPrTItpI aqfqi AK1H_SERMA : 229- 273: eiwtd VdGvytCDPRtVpd-ArlLksMsyqEamELSyfGAkVLhPrTItpI aqfqi AK1_BACSU : 180- 224: diftd VeGvmtADPRvVen-AkpLpvVtytEicNLAyqGAkVIsPrAVeiA mqakv AK1_BACSU : 180- 224: diftd VeGvmtADPR-VvenAkpLpvVtytEicNLAyqGAkVIsPrAVeiA mqakv AK2H_ECOLI : 231- 275: tiwsd VaGvysADPRkVkd-AclLplLrldEasELArlAApVLhArTLqpV sgsei AK2_BACSU : 175- 219: diytd VpGvftTDPRyVks-ArkLegIsydEmlELAnlGAgVLhPrAVefA knyqv AK3_ECOLI : 223- 267: diwtd VpGiytTDPRvVsa-AkrIdeIafaEaaEMAtfGAkVLhPaTLlpA vrsdi AK3_ECOLI : 223- 267: diwtd VpGiytTDPR-VvsaAkrIdeIafaEaaEMAtfGAkVLhPaTLlpA vrsdi AKAB_CORFL : 176- 220: eiysd VdGvytADPRiVpn-AqkLekLsfeEmlELAavGSkILvLrSVeyA rafnv AKAB_CORGL : 176- 220: eiysd VdGvytADPRiVpn-AqkLekLsfeEmlELAavGSkILvLrSVeyA rafnv AKAB_MYCSM : 176- 220: eiytd VdGiftADPRiVpn-ArhLdtVsfeEmlEMAacGAkVLmLrCVeyA rrynv AKH_DAUCA : 319- 363: tiwtd VnGvysADPRkVse-AvvLktLsyqEawEMSyfGAnVLhPrTInpV mrydi AKH_HAEIN : 229- 273: eiwtd VdGvytCDPRlVpd-ArlLptLsyrEamELSyfGAkVIhPrTIgpL lpqni AK_YEAST : 255- 299: qvwke VdGiftADPRkVpe-ArlLdsVtpeEasELTyyGSeVIhPfTMeqV iraki J 10: 72.1624 12( 12) V-x-G-x(3,4)-D-P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV] Occurences: 12(12) AK1H_ECOLI : 229- 273: eiwtd VnGvytcDPRqVpDArlLksMsyqEamELSyfGAkVLhPrTItpI aqfqi AK1H_SERMA : 229- 273: eiwtd VdGvytcDPRtVpDArlLksMsyqEamELSyfGAkVLhPrTItpI aqfqi AK1_BACSU : 180- 224: diftd VeGvmtaDPRvVeNAkpLpvVtytEicNLAyqGAkVIsPrAVeiA mqakv AK2H_ECOLI : 231- 275: tiwsd VaGvysaDPRkVkDAclLplLrldEasELArlAApVLhArTLqpV sgsei AK2_BACSU : 175- 219: diytd VpGvfttDPRyVkSArkLegIsydEmlELAnlGAgVLhPrAVefA knyqv AK3_ECOLI : 223- 267: diwtd VpGiyttDPRvVsAAkrIdeIafaEaaEMAtfGAkVLhPaTLlpA vrsdi AKAB_CORFL : 176- 220: eiysd VdGvytaDPRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyA rafnv AKAB_CORGL : 176- 220: eiysd VdGvytaDPRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyA rafnv AKAB_MYCSM : 176- 220: eiytd VdGiftaDPRiVpNArhLdtVsfeEmlEMAacGAkVLmLrCVeyA rrynv AKH_DAUCA : 319- 363: tiwtd VnGvysaDPRkVsEAvvLktLsyqEawEMSyfGAnVLhPrTInpV mrydi AKH_HAEIN : 229- 273: eiwtd VdGvytcDPRlVpDArlLptLsyrEamELSyfGAkVIhPrTIgpL lpqni AK_YEAST : 255- 299: qvwke VdGiftaDPRkVpEArlLdsVtpeEasELTyyGSeVIhPfTMeqV iraki K 11: 72.1624 12( 12) V-x(0,1)-G-x(4)-D-P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV] Occurences: 12(12) AK1H_ECOLI : 229- 273: eiwtd VnGvytcDPRqVpDArlLksMsyqEamELSyfGAkVLhPrTItpI aqfqi AK1H_SERMA : 229- 273: eiwtd VdGvytcDPRtVpDArlLksMsyqEamELSyfGAkVLhPrTItpI aqfqi AK1_BACSU : 180- 224: diftd VeGvmtaDPRvVeNAkpLpvVtytEicNLAyqGAkVIsPrAVeiA mqakv AK2H_ECOLI : 231- 275: tiwsd VaGvysaDPRkVkDAclLplLrldEasELArlAApVLhArTLqpV sgsei AK2_BACSU : 175- 219: diytd VpGvfttDPRyVkSArkLegIsydEmlELAnlGAgVLhPrAVefA knyqv AK3_ECOLI : 223- 267: diwtd VpGiyttDPRvVsAAkrIdeIafaEaaEMAtfGAkVLhPaTLlpA vrsdi AKAB_CORFL : 176- 220: eiysd VdGvytaDPRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyA rafnv AKAB_CORGL : 176- 220: eiysd VdGvytaDPRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyA rafnv AKAB_MYCSM : 176- 220: eiytd VdGiftaDPRiVpNArhLdtVsfeEmlEMAacGAkVLmLrCVeyA rrynv AKH_DAUCA : 319- 363: tiwtd VnGvysaDPRkVsEAvvLktLsyqEawEMSyfGAnVLhPrTInpV mrydi AKH_HAEIN : 229- 273: eiwtd VdGvytcDPRlVpDArlLptLsyrEamELSyfGAkVIhPrTIgpL lpqni AK_YEAST : 255- 299: qvwke VdGiftaDPRkVpEArlLdsVtpeEasELTyyGSeVIhPfTMeqV iraki L 12: 71.8690 12( 12) P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV]-[DP]-x(2)-[ILV]-x-[CNS] Occurences: 12(12) AK1H_ECOLI : 237- 284: vytcd PRqVpDArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqIPclIkN tgnpq AK1H_SERMA : 237- 284: vytcd PRtVpDArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqIPclIkN tsnpq AK1_BACSU : 188- 235: vmtad PRvVeNAkpLpvVtytEicNLAyqGAkVIsPrAVeiAmqakVPirVrS tysnd AK2H_ECOLI : 239- 286: vysad PRkVkDAclLplLrldEasELArlAApVLhArTLqpVsgseIDlqLrC sytpd AK2_BACSU : 183- 230: vfttd PRyVkSArkLegIsydEmlELAnlGAgVLhPrAVefAknyqVPleVrS stete AK3_ECOLI : 231- 278: iyttd PRvVsAAkrIdeIafaEaaEMAtfGAkVLhPaTLlpAvrsdIPvfVgS skdpr AKAB_CORFL : 184- 231: vytad PRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyArafnVPlrVrS sysnd AKAB_CORGL : 184- 231: vytad PRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyArafnVPlrVrS sysnd AKAB_MYCSM : 184- 231: iftad PRiVpNArhLdtVsfeEmlEMAacGAkVLmLrCVeyArrynVPihVrS sysdk AKH_DAUCA : 327- 374: vysad PRkVsEAvvLktLsyqEawEMSyfGAnVLhPrTInpVmrydIPivIrN ifnls AKH_HAEIN : 237- 284: vytcd PRlVpDArlLptLsyrEamELSyfGAkVIhPrTIgpLlpqnIPcvIkN tgnps AK_YEAST : 263- 310: iftad PRkVpEArlLdsVtpeEasELTyyGSeVIhPfTMeqVirakIPirIkN vqnpl M 13: 71.7172 12( 12) G-x(4)-D-P-R-x-V-x-[ADENS]-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV] Occurences: 12(12) AK1H_ECOLI : 231- 278: wtdvn GvytcDPRqVpDArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqI pclik AK1H_SERMA : 231- 278: wtdvd GvytcDPRtVpDArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqI pclik AK1_BACSU : 182- 229: ftdve GvmtaDPRvVeNAkpLpvVtytEicNLAyqGAkVIsPrAVeiAmqakV pirvr AK2H_ECOLI : 233- 280: wsdva GvysaDPRkVkDAclLplLrldEasELArlAApVLhArTLqpVsgseI dlqlr AK2_BACSU : 177- 224: ytdvp GvfttDPRyVkSArkLegIsydEmlELAnlGAgVLhPrAVefAknyqV plevr AK3_ECOLI : 225- 272: wtdvp GiyttDPRvVsAAkrIdeIafaEaaEMAtfGAkVLhPaTLlpAvrsdI pvfvg AKAB_CORFL : 178- 225: ysdvd GvytaDPRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyArafnV plrvr AKAB_CORGL : 178- 225: ysdvd GvytaDPRiVpNAqkLekLsfeEmlELAavGSkILvLrSVeyArafnV plrvr AKAB_MYCSM : 178- 225: ytdvd GiftaDPRiVpNArhLdtVsfeEmlEMAacGAkVLmLrCVeyArrynV pihvr AKH_DAUCA : 321- 368: wtdvn GvysaDPRkVsEAvvLktLsyqEawEMSyfGAnVLhPrTInpVmrydI pivir AKH_HAEIN : 231- 278: wtdvd GvytcDPRlVpDArlLptLsyrEamELSyfGAkVIhPrTIgpLlpqnI pcvik AK_YEAST : 257- 304: wkevd GiftaDPRkVpEArlLdsVtpeEasELTyyGSeVIhPfTMeqVirakI pirik N 14: 69.7544 12( 12) V-x-G-x(4)-D-P-R-x(0,1)-V-x(2,3)-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV] Occurences: 12(12) AK1H_ECOLI : 229- 273: eiwtd VnGvytcDPRqVpd-ArlLksMsyqEamELSyfGAkVLhPrTItpI aqfqi AK1H_SERMA : 229- 273: eiwtd VdGvytcDPRtVpd-ArlLksMsyqEamELSyfGAkVLhPrTItpI aqfqi AK1_BACSU : 180- 224: diftd VeGvmtaDPRvVen-AkpLpvVtytEicNLAyqGAkVIsPrAVeiA mqakv AK1_BACSU : 180- 224: diftd VeGvmtaDPR-VvenAkpLpvVtytEicNLAyqGAkVIsPrAVeiA mqakv AK2H_ECOLI : 231- 275: tiwsd VaGvysaDPRkVkd-AclLplLrldEasELArlAApVLhArTLqpV sgsei AK2_BACSU : 175- 219: diytd VpGvfttDPRyVks-ArkLegIsydEmlELAnlGAgVLhPrAVefA knyqv AK3_ECOLI : 223- 267: diwtd VpGiyttDPRvVsa-AkrIdeIafaEaaEMAtfGAkVLhPaTLlpA vrsdi AK3_ECOLI : 223- 267: diwtd VpGiyttDPR-VvsaAkrIdeIafaEaaEMAtfGAkVLhPaTLlpA vrsdi AKAB_CORFL : 176- 220: eiysd VdGvytaDPRiVpn-AqkLekLsfeEmlELAavGSkILvLrSVeyA rafnv AKAB_CORGL : 176- 220: eiysd VdGvytaDPRiVpn-AqkLekLsfeEmlELAavGSkILvLrSVeyA rafnv AKAB_MYCSM : 176- 220: eiytd VdGiftaDPRiVpn-ArhLdtVsfeEmlEMAacGAkVLmLrCVeyA rrynv AKH_DAUCA : 319- 363: tiwtd VnGvysaDPRkVse-AvvLktLsyqEawEMSyfGAnVLhPrTInpV mrydi AKH_HAEIN : 229- 273: eiwtd VdGvytcDPRlVpd-ArlLptLsyrEamELSyfGAkVIhPrTIgpL lpqni AK_YEAST : 255- 299: qvwke VdGiftaDPRkVpe-ArlLdsVtpeEasELTyyGSeVIhPfTMeqV iraki O 15: 68.9611 12( 12) P-R-x(0,1)-V-x(2,3)-A-x(2)-[IL]-x(2)-[ILMV]-x(3)-E-x(2)-[EN]-[LM]-[AST]-x(2)-[AG]-[AS]-x-[IV]-[IL]-x-[ALP]-x-[ACST]-[ILMV]-x(2)-[AILV]-x(4)-[IV]-[DP]-x(2)-[ILV]-x-[CNS] Occurences: 12(12) AK1H_ECOLI : 237- 284: vytcd PRqVpd-ArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqIPclIkN tgnpq AK1H_SERMA : 237- 284: vytcd PRtVpd-ArlLksMsyqEamELSyfGAkVLhPrTItpIaqfqIPclIkN tsnpq AK1_BACSU : 188- 235: vmtad PRvVen-AkpLpvVtytEicNLAyqGAkVIsPrAVeiAmqakVPirVrS tysnd AK1_BACSU : 188- 235: vmtad PR-VvenAkpLpvVtytEicNLAyqGAkVIsPrAVeiAmqakVPirVrS tysnd AK2H_ECOLI : 239- 286: vysad PRkVkd-AclLplLrldEasELArlAApVLhArTLqpVsgseIDlqLrC sytpd AK2_BACSU : 183- 230: vfttd PRyVks-ArkLegIsydEmlELAnlGAgVLhPrAVefAknyqVPleVrS stete AK3_ECOLI : 231- 278: iyttd PRvVsa-AkrIdeIafaEaaEMAtfGAkVLhPaTLlpAvrsdIPvfVgS skdpr AK3_ECOLI : 231- 278: iyttd PR-VvsaAkrIdeIafaEaaEMAtfGAkVLhPaTLlpAvrsdIPvfVgS skdpr AKAB_CORFL : 184- 231: vytad PRiVpn-AqkLekLsfeEmlELAavGSkILvLrSVeyArafnVPlrVrS sysnd AKAB_CORGL : 184- 231: vytad PRiVpn-AqkLekLsfeEmlELAavGSkILvLrSVeyArafnVPlrVrS sysnd AKAB_MYCSM : 184- 231: iftad PRiVpn-ArhLdtVsfeEmlEMAacGAkVLmLrCVeyArrynVPihVrS sysdk AKH_DAUCA : 327- 374: vysad PRkVse-AvvLktLsyqEawEMSyfGAnVLhPrTInpVmrydIPivIrN ifnls AKH_HAEIN : 237- 284: vytcd PRlVpd-ArlLptLsyrEamELSyfGAkVIhPrTIgpLlpqnIPcvIkN tgnps AK_YEAST : 263- 310: iftad PRkVpe-ArlLdsVtpeEasELTyyGSeVIhPfTMeqVirakIPirIkN vqnpl P 16: 32.3703 12( 12) I-x(2,3)-V-x(1,2)-G-[FIV]-x-[GST]-x-[DV]-P-x(2)-[LV]-x-[ADENS]-[AG] Occurences: 12(12) AK1H_ECOLI : 225- 243: adcce IwtdVn-GVyTcDPrqVpDA rllks AK1H_SERMA : 225- 243: adcce IwtdVd-GVyTcDPrtVpDA rllks AK1_BACSU : 176- 194: aeyid IftdVe-GVmTaDPrvVeNA kplpv AK2H_ECOLI : 227- 245: vsrvt IwsdVa-GVySaDPrkVkDA cllpl AK2_BACSU : 171- 189: vdkcd IytdVp-GVfTtDPryVkSA rkleg AK3_ECOLI : 219- 237: asrvd IwtdVp-GIyTtDPrvVsAA kride AKAB_CORFL : 172- 190: advce IysdVd-GVyTaDPriVpNA qklek AKAB_CORGL : 172- 190: advce IysdVd-GVyTaDPriVpNA qklek AKAB_MYCSM : 172- 190: advce IytdVd-GIfTaDPriVpNA rhldt AKH_DAUCA : 315- 333: agqvt IwtdVn-GVySaDPrkVsEA vvlkt AKH_HAEIN : 225- 243: asvce IwtdVd-GVyTcDPrlVpDA rllpt AK_YEAST : 209- 227: saker Ivp-VftGFfGlVPtgLlNG vgrgy Q 17: 30.7787 15( 12) G-x(1,2)-T-x(1,2)-D-P-R-x-[DV]-x-[ADENS]-[AG]-x(2)-[ILV] Occurences: 15(12) AK1H_ECOLI : 231- 246: wtdvn GvyTc-DPRqVpDArlL ksmsy AK1H_ECOLI : 664- 679: larem Gy-TepDPRdDlSGmdV arkll AK1H_SERMA : 231- 246: wtdvd GvyTc-DPRtVpDArlL ksmsy AK1H_SERMA : 664- 679: qaran Gy-TepDPRdDlSGmdV arkll AK1_BACSU : 182- 197: ftdve GvmTa-DPRvVeNAkpL pvvty AK2H_ECOLI : 657- 672: qawqq Gl-TepDPRdDlSGkdV mrklv AK2_BACSU : 177- 192: ytdvp GvfTt-DPRyVkSArkL egisy AK3_ECOLI : 225- 240: wtdvp GiyTt-DPRvVsAAkrI deiaf AKAB_CORFL : 178- 193: ysdvd GvyTa-DPRiVpNAqkL eklsf AKAB_CORGL : 178- 193: ysdvd GvyTa-DPRiVpNAqkL eklsf AKAB_MYCSM : 178- 193: ytdvd GifTa-DPRiVpNArhL dtvsf AKH_DAUCA : 763- 778: eakaa Gy-TepDPRdDlAGtdV arkvi AKH_HAEIN : 231- 246: wtdvd GvyTc-DPRlVpDArlL ptlsy AKH_HAEIN : 664- 679: larek Gf-TepDPRdDlSGqdV arkll AK_YEAST : 257- 272: wkevd GifTa-DPRkVpEArlL dsvtp R 18: 27.1087 15( 12) T-x(1,2)-D-P-R-x-[DV]-x-[ADENS]-[AG]-x(2)-[ILV] Occurences: 15(12) AK1H_ECOLI : 234- 246: vngvy Tc-DPRqVpDArlL ksmsy AK1H_ECOLI : 666- 679: remgy TepDPRdDlSGmdV arkll AK1H_SERMA : 234- 246: vdgvy Tc-DPRtVpDArlL ksmsy AK1H_SERMA : 666- 679: rangy TepDPRdDlSGmdV arkll AK1_BACSU : 185- 197: vegvm Ta-DPRvVeNAkpL pvvty AK2H_ECOLI : 659- 672: wqqgl TepDPRdDlSGkdV mrklv AK2_BACSU : 180- 192: vpgvf Tt-DPRyVkSArkL egisy AK3_ECOLI : 228- 240: vpgiy Tt-DPRvVsAAkrI deiaf AKAB_CORFL : 181- 193: vdgvy Ta-DPRiVpNAqkL eklsf AKAB_CORGL : 181- 193: vdgvy Ta-DPRiVpNAqkL eklsf AKAB_MYCSM : 181- 193: vdgif Ta-DPRiVpNArhL dtvsf AKH_DAUCA : 765- 778: kaagy TepDPRdDlAGtdV arkvi AKH_HAEIN : 234- 246: vdgvy Tc-DPRlVpDArlL ptlsy AKH_HAEIN : 666- 679: rekgf TepDPRdDlSGqdV arkll AK_YEAST : 260- 272: vdgif Ta-DPRkVpEArlL dsvtp S 19: 26.8804 12( 12) R-[DGN]-x-[ST]-D-x-[CST]-A-x(4,5)-A-x(3)-[ADSV] Occurences: 12(12) AK1H_ECOLI : 204- 220: lvvlg RNgSDySAavla-AclrA dccei AK1H_SERMA : 204- 220: lvvlg RNgSDySAavla-AclrA dccei AK1_BACSU : 155- 171: tttig RGgSDtSAaalg-AavdA eyidi AK2H_ECOLI : 206- 222: tvllg RNgSDySAtqig-AlagV srvti AK2_BACSU : 150- 166: ittlg RGgSDtTAvala-AalkV dkcdi AK2_BACSU : 150- 167: ittlg RGgSDtTAvalaaAlkvD kcdiy AK3_ECOLI : 198- 215: tttlg RGgSDyTAallaeAlhaS rvdiw AKAB_CORFL : 151- 167: vttlg RGgSDtTAvala-AalnA dvcei AKAB_CORFL : 151- 168: vttlg RGgSDtTAvalaaAlnaD vceiy AKAB_CORGL : 151- 167: vttlg RGgSDtTAvala-AalnA dvcei AKAB_CORGL : 151- 168: vttlg RGgSDtTAvalaaAlnaD vceiy AKAB_MYCSM : 151- 167: vttlg RGgSDtTAvava-AaldA dvcei AKAB_MYCSM : 151- 168: vttlg RGgSDtTAvavaaAldaD vceiy AKH_DAUCA : 294- 310: pttlk RDgSDfSAaimg-AllrA gqvti AKH_HAEIN : 204- 220: lvllg RNgSDySAacla-AclgA svcei AK_YEAST : 230- 247: lngvg RGyTDlCAaliavAvnaD elqvw T 20: 20.9190 18( 12) G-x(1,2)-D-x-[CST]-A-x(0,1)-A-x(2)-[AGS] Occurences: 18(12) AK1H_ECOLI : 206- 215: vlgrn Gs-DySA-AvlA aclra AK1H_SERMA : 206- 215: vlgrn Gs-DySA-AvlA aclra AK1_BACSU : 156- 166: ttigr GgsDtSA-AalG aavda AK1_BACSU : 156- 167: ttigr GgsDtSAaAlgA avdae AK1_BACSU : 157- 166: tigrg Gs-DtSA-AalG aavda AK1_BACSU : 157- 167: tigrg Gs-DtSAaAlgA avdae AK2H_ECOLI : 790- 800: rgpga Gr-DvTAgAiqS dinrl AK2_BACSU : 151- 162: ttlgr GgsDtTAvAlaA alkvd AK2_BACSU : 152- 162: tlgrg Gs-DtTAvAlaA alkvd AK3_ECOLI : 199- 209: ttlgr GgsDyTA-AllA ealha AK3_ECOLI : 200- 209: tlgrg Gs-DyTA-AllA ealha AKAB_CORFL : 152- 163: ttlgr GgsDtTAvAlaA alnad AKAB_CORFL : 153- 163: tlgrg Gs-DtTAvAlaA alnad AKAB_CORGL : 152- 163: ttlgr GgsDtTAvAlaA alnad AKAB_CORGL : 153- 163: tlgrg Gs-DtTAvAlaA alnad AKAB_MYCSM : 152- 163: ttlgr GgsDtTAvAvaA aldad AKAB_MYCSM : 153- 163: tlgrg Gs-DtTAvAvaA aldad AKH_DAUCA : 296- 305: tlkrd Gs-DfSA-AimG allra AKH_HAEIN : 206- 215: llgrn Gs-DySA-AclA aclga AK_YEAST : 231- 241: ngvgr GytDlCA-AliA vavna Number of patterns evaluated by Pratt:13061 Total running time: 17 seconds