------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file ASN_GLN_ASE_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ASN_GLN_ASE_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ASG1_ECOLI 338 ASG1_YEAST 381 ASG2_ECOLI 348 ASG2_HAEIN 349 ASG2_YEAST 257 ASPG_BACLI 322 ASPG_BACSU 329 ASPG_ERWCH 348 ASPQ_ACIGL 331 ASPQ_PSES7 337 Pratt run started at Thu Feb 6 18:53:54 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 32.8604 10( 10) G-x-V-x(2)-H-G-T-D-T-x(4,5)-A 2: 28.6904 10( 10) V-x(2)-H-G-T-D-T-x(4,5)-A 3: 28.1904 12( 10) V-x(1,2)-H-G-T-D-T-x(4,5)-A 4: 24.5203 10( 10) H-G-T-D-T-x(4,5)-A 5: 20.8503 10( 10) T-G-G-T-I 6: 20.3503 10( 10) G-T-D-T-x(4,5)-A 7: 16.6802 10( 10) D-x(3)-N-x(3)-A-x(3)-A 8: 16.6802 10( 10) G-G-T-I 9: 16.1802 11( 10) T-D-T-x(4,5)-A 10: 16.1802 13( 10) V-x(1,2)-T-x-G-T 11: 16.1802 10( 10) I-x(1,2)-T-G-x(2)-I 12: 15.6802 11( 10) G-x(0,1)-G-T-x(0,1)-I 13: 15.6802 15( 10) V-x(0,2)-T-x-G-T 14: 15.6802 11( 10) I-x(2,3)-G-x(1,2)-T-x-A 15: 15.6802 12( 10) G-x(5)-G-x(1,2)-T-x(4,5)-A 16: 15.6802 12( 10) G-x(0,1)-G-x(0,1)-T-I 17: 15.6802 12( 10) G-x(0,2)-G-T-I 18: 15.1802 10( 10) G-x-V-x(0,1)-T-x(1,3)-G 19: 15.1802 10( 10) I-x(2,3)-T-x(0,2)-T-x-A 20: 14.6802 10( 10) T-x(0,2)-H-x(0,2)-G-x-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 36.0853 10( 10) G-x-V-[IV]-x-H-G-T-D-T-x(4,5)-A B 2: 33.0455 10( 10) T-x(0,2)-H-x(0,2)-G-x-D-[AT]-[FLMV]-[AES]-x-[PST]-[ANS]-x(2)-[ILP]-x(3)-[AILV] C 3: 32.2388 10( 10) T-G-G-T-I-[AG]-x(4)-[DEST]-[AGNQS]-[AGSTV]-x(2)-[ANPT] D 4: 31.9152 10( 10) V-[IV]-x-H-G-T-D-T-x(4,5)-A E 5: 30.2533 12( 10) V-x(1,2)-T-x-G-T-x-[GT]-[LMV]-[AEQS]-x-[ST]-[AES] F 6: 30.2527 10( 10) D-[AG]-x(2)-N-[IL]-x(2)-A-[ILV]-x(2)-A-[ACGS]-[DENS] G 7: 29.7533 14( 10) V-x(0,2)-T-x-G-T-x-[GT]-[LMV]-[AEQS]-x-[ST]-[AES] H 8: 28.1904 12( 10) V-x(1,2)-H-G-T-D-T-x(4,5)-A I 9: 28.0688 10( 10) G-G-T-I-[AG]-x(4)-[DEST]-[AGNQS]-[AGSTV]-x(2)-[ANPT] J 10: 27.2452 10( 10) G-x-V-[IV]-x-H-G-x(1,2)-T-x(4,5)-A K 11: 27.0688 12( 10) G-x(0,1)-G-x(0,1)-T-I-[AG]-x(4)-[DEST]-[AGNQS]-[AGSTV]-x(2)-[ANPT] L 12: 27.0688 12( 10) G-x(0,2)-G-T-I-[AG]-x(4)-[DEST]-[AGNQS]-[AGSTV]-x(2)-[ANPT] M 13: 25.7838 10( 10) I-x(1,2)-T-G-[GS]-[QT]-I-[AP] N 14: 24.5203 10( 10) H-G-T-D-T-x(4,5)-A O 15: 24.2262 10( 10) G-x-V-x(0,1)-T-x(1,3)-G-x-[DS]-[AT]-x(4)-[ANS] P 16: 22.7418 10( 10) I-x(2,3)-G-x(1,2)-T-[IM]-A-x(4)-[ADEST]-x-[AGSTV] Q 17: 21.8375 10( 10) I-x(2,3)-T-x(0,2)-T-x-A-x(2)-[AGS]-x-[ADSTV]-x-[ASTV] R 18: 20.3503 10( 10) G-T-D-T-x(4,5)-A S 19: 16.1802 11( 10) T-D-T-x(4,5)-A T 20: 15.1802 10( 10) G-x-V-x(0,1)-T-x(1,3)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 36.0853 10( 10) G-x-V-[IV]-x-H-G-T-D-T-x(4,5)-A Occurences: 10(10) ASG1_ECOLI : 84- 98: yddyd GfVIlHGTDTmayt-A salsf ASG1_YEAST : 134- 148: lqafd GiVItHGTDTlset-A ffies ASG2_ECOLI : 104- 118: cdktd GfVItHGTDTmeet-A yfldl ASG2_HAEIN : 105- 119: ckstd GfVItHGTDTmeet-A yfldl ASG2_YEAST : 115- 129: sddya GaVVtHGTDTmeet-A ffldl ASPG_BACLI : 82- 96: dggyd GaVVtHGTDTleet-A yfldl ASPG_BACSU : 78- 93: ydayd GfVItHGTDTmaytsA alsym ASPG_ERWCH : 109- 123: rddvd GvVItHGTDTvees-A yflhl ASPQ_ACIGL : 85- 99: kpsvn GvVItHGTDTmeet-A fflnl ASPQ_PSES7 : 93- 107: sndvd GiVItHGTDTleet-A yfldl B 2: 33.0455 10( 10) T-x(0,2)-H-x(0,2)-G-x-D-[AT]-[FLMV]-[AES]-x-[PST]-[ANS]-x(2)-[ILP]-x(3)-[AILV] Occurences: 10(10) ASG1_ECOLI : 162- 183: rgnrt TkaHadGfDAFAsPNlpPlleA gihir ASG1_YEAST : 138- 155: dgivi T--H--GtDTLSeTAffIestI dagdv ASG2_ECOLI : 108- 125: dgfvi T--H--GtDTMEeTAyfLdltV kcdkp ASG2_HAEIN : 109- 126: dgfvi T--H--GtDTMEeTAyfLdltV kcekp ASG2_YEAST : 119- 136: agavv T--H--GtDTMEeTAffLdltI nsekp ASPG_BACLI : 86- 103: dgavv T--H--GtDTLEeTAyfLdltI ederp ASPG_BACSU : 82- 99: dgfvi T--H--GtDTMAyTSaaLsymL qhakk ASPG_ERWCH : 113- 130: dgvvi T--H--GtDTVEeSAyfLhltV ksdkp ASPQ_ACIGL : 89- 106: ngvvi T--H--GtDTMEeTAffLnlvV htdkp ASPQ_PSES7 : 97- 114: dgivi T--H--GtDTLEeTAyfLdltL ntdkp C 3: 32.2388 10( 10) T-G-G-T-I-[AG]-x(4)-[DEST]-[AGNQS]-[AGSTV]-x(2)-[ANPT] Occurences: 10(10) ASG1_ECOLI : 11- 26: iyvay TGGTIGmqrsEQGyiP vsghl ASG1_YEAST : 61- 76: ikilg TGGTIAskaiDSSqtA gyhvd ASG2_ECOLI : 31- 46: itila TGGTIAgggdSATksN ytvgk ASG2_HAEIN : 32- 47: itila TGGTIAgsgqSSVnsA ykagq ASG2_YEAST : 40- 55: ikifg TGGTIAskgsTSAttA gysvg ASPG_BACLI : 10- 25: valit TGGTIAsrktESGrlA agais ASPG_BACSU : 9- 24: llmlt TGGTIAsvegENGlaP gvkad ASPG_ERWCH : 33- 48: ivila TGGTIAgsaaTGTqtT gykag ASPQ_ACIGL : 9- 24: vviva TGGTIAgagaSSTnsA tysaa ASPQ_PSES7 : 17- 32: vvila TGGTIAgagaSAAnsA tyqaa D 4: 31.9152 10( 10) V-[IV]-x-H-G-T-D-T-x(4,5)-A Occurences: 10(10) ASG1_ECOLI : 86- 98: dydgf VIlHGTDTmayt-A salsf ASG1_YEAST : 136- 148: afdgi VItHGTDTlset-A ffies ASG2_ECOLI : 106- 118: ktdgf VItHGTDTmeet-A yfldl ASG2_HAEIN : 107- 119: stdgf VItHGTDTmeet-A yfldl ASG2_YEAST : 117- 129: dyaga VVtHGTDTmeet-A ffldl ASPG_BACLI : 84- 96: gydga VVtHGTDTleet-A yfldl ASPG_BACSU : 80- 93: aydgf VItHGTDTmaytsA alsym ASPG_ERWCH : 111- 123: dvdgv VItHGTDTvees-A yflhl ASPQ_ACIGL : 87- 99: svngv VItHGTDTmeet-A fflnl ASPQ_PSES7 : 95- 107: dvdgi VItHGTDTleet-A yfldl E 5: 30.2533 12( 10) V-x(1,2)-T-x-G-T-x-[GT]-[LMV]-[AEQS]-x-[ST]-[AES] Occurences: 12(10) ASG1_ECOLI : 8- 21: kksiy VayTgGTiGMQrSE qgyip ASG1_YEAST : 136- 148: afdgi Vi-ThGTdTLSeTA ffies ASG2_ECOLI : 106- 118: ktdgf Vi-ThGTdTMEeTA yfldl ASG2_HAEIN : 107- 119: stdgf Vi-ThGTdTMEeTA yfldl ASG2_YEAST : 117- 129: dyaga Vv-ThGTdTMEeTA ffldl ASPG_BACLI : 84- 96: gydga Vv-ThGTdTLEeTA yfldl ASPG_BACSU : 80- 92: aydgf Vi-ThGTdTMAyTS aalsy ASPG_ERWCH : 110- 123: ddvdg VviThGTdTVEeSA yflhl ASPG_ERWCH : 111- 123: dvdgv Vi-ThGTdTVEeSA yflhl ASPQ_ACIGL : 86- 99: psvng VviThGTdTMEeTA fflnl ASPQ_ACIGL : 87- 99: svngv Vi-ThGTdTMEeTA fflnl ASPQ_PSES7 : 95- 107: dvdgi Vi-ThGTdTLEeTA yfldl F 6: 30.2527 10( 10) D-[AG]-x(2)-N-[IL]-x(2)-A-[ILV]-x(2)-A-[ACGS]-[DENS] Occurences: 10(10) ASG1_ECOLI : 127- 141: aelrs DGqiNLlnALyvAAN ypine ASG1_YEAST : 177- 191: tsvsa DGpmNLyqAIciASN pksrg ASG2_ECOLI : 146- 160: tsmsa DGpfNLynAVvtAAD kasan ASG2_HAEIN : 147- 161: teksa DGplNLynAVvvAAD kkssg ASG2_YEAST : 157- 171: tatsa DGpmNLyqAVsiAAS ekslg ASPG_BACLI : 124- 138: eqqgt DAytNIrhAVytACS pdikg ASPG_BACSU : 121- 135: tfqkt DAkkNItdAIrfACE gvggv ASPG_ERWCH : 151- 165: taisa DGpmNLleAVrvAGD kqsrg ASPQ_ACIGL : 127- 141: talsa DGplNLysAValASS neakn ASPQ_PSES7 : 135- 149: tamsa DGmlNLynAVavASN kdsrg G 7: 29.7533 14( 10) V-x(0,2)-T-x-G-T-x-[GT]-[LMV]-[AEQS]-x-[ST]-[AES] Occurences: 14(10) ASG1_ECOLI : 8- 21: kksiy VayTgGTiGMQrSE qgyip ASG1_YEAST : 136- 148: afdgi Vi-ThGTdTLSeTA ffies ASG2_ECOLI : 106- 118: ktdgf Vi-ThGTdTMEeTA yfldl ASG2_HAEIN : 107- 119: stdgf Vi-ThGTdTMEeTA yfldl ASG2_YEAST : 117- 129: dyaga Vv-ThGTdTMEeTA ffldl ASG2_YEAST : 118- 129: yagav V--ThGTdTMEeTA ffldl ASPG_BACLI : 84- 96: gydga Vv-ThGTdTLEeTA yfldl ASPG_BACLI : 85- 96: ydgav V--ThGTdTLEeTA yfldl ASPG_BACSU : 80- 92: aydgf Vi-ThGTdTMAyTS aalsy ASPG_ERWCH : 110- 123: ddvdg VviThGTdTVEeSA yflhl ASPG_ERWCH : 111- 123: dvdgv Vi-ThGTdTVEeSA yflhl ASPQ_ACIGL : 86- 99: psvng VviThGTdTMEeTA fflnl ASPQ_ACIGL : 87- 99: svngv Vi-ThGTdTMEeTA fflnl ASPQ_PSES7 : 95- 107: dvdgi Vi-ThGTdTLEeTA yfldl H 8: 28.1904 12( 10) V-x(1,2)-H-G-T-D-T-x(4,5)-A Occurences: 12(10) ASG1_ECOLI : 86- 98: dydgf VilHGTDTmayt-A salsf ASG1_YEAST : 136- 148: afdgi VitHGTDTlset-A ffies ASG2_ECOLI : 106- 118: ktdgf VitHGTDTmeet-A yfldl ASG2_HAEIN : 107- 119: stdgf VitHGTDTmeet-A yfldl ASG2_YEAST : 117- 129: dyaga VvtHGTDTmeet-A ffldl ASG2_YEAST : 118- 129: yagav Vt-HGTDTmeet-A ffldl ASPG_BACLI : 84- 96: gydga VvtHGTDTleet-A yfldl ASPG_BACLI : 85- 96: ydgav Vt-HGTDTleet-A yfldl ASPG_BACSU : 80- 93: aydgf VitHGTDTmaytsA alsym ASPG_ERWCH : 111- 123: dvdgv VitHGTDTvees-A yflhl ASPQ_ACIGL : 87- 99: svngv VitHGTDTmeet-A fflnl ASPQ_PSES7 : 95- 107: dvdgi VitHGTDTleet-A yfldl I 9: 28.0688 10( 10) G-G-T-I-[AG]-x(4)-[DEST]-[AGNQS]-[AGSTV]-x(2)-[ANPT] Occurences: 10(10) ASG1_ECOLI : 12- 26: yvayt GGTIGmqrsEQGyiP vsghl ASG1_YEAST : 62- 76: kilgt GGTIAskaiDSSqtA gyhvd ASG2_ECOLI : 32- 46: tilat GGTIAgggdSATksN ytvgk ASG2_HAEIN : 33- 47: tilat GGTIAgsgqSSVnsA ykagq ASG2_YEAST : 41- 55: kifgt GGTIAskgsTSAttA gysvg ASPG_BACLI : 11- 25: alitt GGTIAsrktESGrlA agais ASPG_BACSU : 10- 24: lmltt GGTIAsvegENGlaP gvkad ASPG_ERWCH : 34- 48: vilat GGTIAgsaaTGTqtT gykag ASPQ_ACIGL : 10- 24: vivat GGTIAgagaSSTnsA tysaa ASPQ_PSES7 : 18- 32: vilat GGTIAgagaSAAnsA tyqaa J 10: 27.2452 10( 10) G-x-V-[IV]-x-H-G-x(1,2)-T-x(4,5)-A Occurences: 10(10) ASG1_ECOLI : 84- 98: yddyd GfVIlHGtdTmayt-A salsf ASG1_YEAST : 134- 148: lqafd GiVItHGtdTlset-A ffies ASG2_ECOLI : 104- 118: cdktd GfVItHGtdTmeet-A yfldl ASG2_HAEIN : 105- 119: ckstd GfVItHGtdTmeet-A yfldl ASG2_YEAST : 115- 129: sddya GaVVtHGtdTmeet-A ffldl ASPG_BACLI : 82- 96: dggyd GaVVtHGtdTleet-A yfldl ASPG_BACSU : 78- 93: ydayd GfVItHGtdTmaytsA alsym ASPG_ERWCH : 109- 123: rddvd GvVItHGtdTvees-A yflhl ASPQ_ACIGL : 85- 99: kpsvn GvVItHGtdTmeet-A fflnl ASPQ_PSES7 : 93- 107: sndvd GiVItHGtdTleet-A yfldl K 11: 27.0688 12( 10) G-x(0,1)-G-x(0,1)-T-I-[AG]-x(4)-[DEST]-[AGNQS]-[AGSTV]-x(2)-[ANPT] Occurences: 12(10) ASG1_ECOLI : 12- 26: yvayt G-G-TIGmqrsEQGyiP vsghl ASG1_YEAST : 60- 76: rikil GtGgTIAskaiDSSqtA gyhvd ASG1_YEAST : 62- 76: kilgt G-G-TIAskaiDSSqtA gyhvd ASG2_ECOLI : 32- 46: tilat G-G-TIAgggdSATksN ytvgk ASG2_HAEIN : 33- 47: tilat G-G-TIAgsgqSSVnsA ykagq ASG2_YEAST : 39- 55: sikif GtGgTIAskgsTSAttA gysvg ASG2_YEAST : 41- 55: kifgt G-G-TIAskgsTSAttA gysvg ASPG_BACLI : 11- 25: alitt G-G-TIAsrktESGrlA agais ASPG_BACSU : 10- 24: lmltt G-G-TIAsvegENGlaP gvkad ASPG_ERWCH : 34- 48: vilat G-G-TIAgsaaTGTqtT gykag ASPQ_ACIGL : 10- 24: vivat G-G-TIAgagaSSTnsA tysaa ASPQ_PSES7 : 18- 32: vilat G-G-TIAgagaSAAnsA tyqaa L 12: 27.0688 12( 10) G-x(0,2)-G-T-I-[AG]-x(4)-[DEST]-[AGNQS]-[AGSTV]-x(2)-[ANPT] Occurences: 12(10) ASG1_ECOLI : 12- 26: yvayt G--GTIGmqrsEQGyiP vsghl ASG1_YEAST : 60- 76: rikil GtgGTIAskaiDSSqtA gyhvd ASG1_YEAST : 62- 76: kilgt G--GTIAskaiDSSqtA gyhvd ASG2_ECOLI : 32- 46: tilat G--GTIAgggdSATksN ytvgk ASG2_HAEIN : 33- 47: tilat G--GTIAgsgqSSVnsA ykagq ASG2_YEAST : 39- 55: sikif GtgGTIAskgsTSAttA gysvg ASG2_YEAST : 41- 55: kifgt G--GTIAskgsTSAttA gysvg ASPG_BACLI : 11- 25: alitt G--GTIAsrktESGrlA agais ASPG_BACSU : 10- 24: lmltt G--GTIAsvegENGlaP gvkad ASPG_ERWCH : 34- 48: vilat G--GTIAgsaaTGTqtT gykag ASPQ_ACIGL : 10- 24: vivat G--GTIAgagaSSTnsA tysaa ASPQ_PSES7 : 18- 32: vilat G--GTIAgagaSAAnsA tyqaa M 13: 25.7838 10( 10) I-x(1,2)-T-G-[GS]-[QT]-I-[AP] Occurences: 10(10) ASG1_ECOLI : 113- 120: lgkpv Iv-TGSQIP laelr ASG1_YEAST : 58- 66: lprik IlgTGGTIA skaid ASG2_ECOLI : 28- 36: lpnit IlaTGGTIA gggds ASG2_HAEIN : 29- 37: lpnit IlaTGGTIA gsgqs ASG2_YEAST : 37- 45: lpsik IfgTGGTIA skgst ASPG_BACLI : 8- 15: kkval It-TGGTIA srkte ASPG_BACSU : 106- 114: hakkp IviTGSQIP itfqk ASPG_ERWCH : 30- 38: lpniv IlaTGGTIA gsaat ASPQ_ACIGL : 6- 14: knnvv IvaTGGTIA gagas ASPQ_PSES7 : 14- 22: lanvv IlaTGGTIA gagas N 14: 24.5203 10( 10) H-G-T-D-T-x(4,5)-A Occurences: 10(10) ASG1_ECOLI : 89- 98: gfvil HGTDTmayt-A salsf ASG1_YEAST : 139- 148: givit HGTDTlset-A ffies ASG2_ECOLI : 109- 118: gfvit HGTDTmeet-A yfldl ASG2_HAEIN : 110- 119: gfvit HGTDTmeet-A yfldl ASG2_YEAST : 120- 129: gavvt HGTDTmeet-A ffldl ASPG_BACLI : 87- 96: gavvt HGTDTleet-A yfldl ASPG_BACSU : 83- 93: gfvit HGTDTmaytsA alsym ASPG_ERWCH : 114- 123: gvvit HGTDTvees-A yflhl ASPQ_ACIGL : 90- 99: gvvit HGTDTmeet-A fflnl ASPQ_PSES7 : 98- 107: givit HGTDTleet-A yfldl O 15: 24.2262 10( 10) G-x-V-x(0,1)-T-x(1,3)-G-x-[DS]-[AT]-x(4)-[ANS] Occurences: 10(10) ASG1_ECOLI : 213- 228: tpqpi GvV-TiypGiSAdvvrN flrqp ASG1_YEAST : 134- 148: lqafd GiViTh--GtDTlsetA ffies ASG2_ECOLI : 104- 118: cdktd GfViTh--GtDTmeetA yfldl ASG2_HAEIN : 105- 119: ckstd GfViTh--GtDTmeetA yfldl ASG2_YEAST : 115- 129: sddya GaVvTh--GtDTmeetA ffldl ASPG_BACLI : 82- 96: dggyd GaVvTh--GtDTleetA yfldl ASPG_BACSU : 78- 92: ydayd GfViTh--GtDTmaytS aalsy ASPG_ERWCH : 109- 123: rddvd GvViTh--GtDTveesA yflhl ASPQ_ACIGL : 85- 99: kpsvn GvViTh--GtDTmeetA fflnl ASPQ_PSES7 : 93- 107: sndvd GiViTh--GtDTleetA yfldl P 16: 22.7418 10( 10) I-x(2,3)-G-x(1,2)-T-[IM]-A-x(4)-[ADEST]-x-[AGSTV] Occurences: 10(10) ASG1_ECOLI : 87- 102: ydgfv Ilh-GtdTMAytasAlS fmlen ASG1_YEAST : 58- 73: lprik IlgtGg-TIAskaiDsS qtagy ASG2_ECOLI : 28- 43: lpnit IlatGg-TIAgggdSaT ksnyt ASG2_HAEIN : 29- 44: lpnit IlatGg-TIAgsgqSsV nsayk ASG2_YEAST : 37- 52: lpsik IfgtGg-TIAskgsTsA ttagy ASPG_BACLI : 8- 22: kkval Itt-Gg-TIAsrktEsG rlaag ASPG_BACSU : 81- 96: ydgfv Ith-GtdTMAytsaAlS ymlqh ASPG_ERWCH : 30- 45: lpniv IlatGg-TIAgsaaTgT qttgy ASPQ_ACIGL : 6- 21: knnvv IvatGg-TIAgagaSsT nsaty ASPQ_PSES7 : 14- 29: lanvv IlatGg-TIAgagaSaA nsaty Q 17: 21.8375 10( 10) I-x(2,3)-T-x(0,2)-T-x-A-x(2)-[AGS]-x-[ADSTV]-x-[ASTV] Occurences: 10(10) ASG1_ECOLI : 87- 102: ydgfv IlhgTd-TmAytAsAlS fmlen ASG1_YEAST : 58- 73: lprik Ilg-TggTiAskAiDsS qtagy ASG2_ECOLI : 28- 43: lpnit Ila-TggTiAggGdSaT ksnyt ASG2_HAEIN : 29- 44: lpnit Ila-TggTiAgsGqSsV nsayk ASG2_YEAST : 37- 52: lpsik Ifg-TggTiAskGsTsA ttagy ASPG_BACLI : 261- 274: nqgvy Ivi-T--TsAeeGeVyT tydya ASPG_BACSU : 81- 96: ydgfv IthgTd-TmAytSaAlS ymlqh ASPG_ERWCH : 30- 45: lpniv Ila-TggTiAgsAaTgT qttgy ASPQ_ACIGL : 6- 21: knnvv Iva-TggTiAgaGaSsT nsaty ASPQ_PSES7 : 14- 29: lanvv Ila-TggTiAgaGaSaA nsaty R 18: 20.3503 10( 10) G-T-D-T-x(4,5)-A Occurences: 10(10) ASG1_ECOLI : 90- 98: fvilh GTDTmayt-A salsf ASG1_YEAST : 140- 148: ivith GTDTlset-A ffies ASG2_ECOLI : 110- 118: fvith GTDTmeet-A yfldl ASG2_HAEIN : 111- 119: fvith GTDTmeet-A yfldl ASG2_YEAST : 121- 129: avvth GTDTmeet-A ffldl ASPG_BACLI : 88- 96: avvth GTDTleet-A yfldl ASPG_BACSU : 84- 93: fvith GTDTmaytsA alsym ASPG_ERWCH : 115- 123: vvith GTDTvees-A yflhl ASPQ_ACIGL : 91- 99: vvith GTDTmeet-A fflnl ASPQ_PSES7 : 99- 107: ivith GTDTleet-A yfldl S 19: 16.1802 11( 10) T-D-T-x(4,5)-A Occurences: 11(10) ASG1_ECOLI : 91- 98: vilhg TDTmayt-A salsf ASG1_YEAST : 141- 148: vithg TDTlset-A ffies ASG2_ECOLI : 111- 118: vithg TDTmeet-A yfldl ASG2_HAEIN : 112- 119: vithg TDTmeet-A yfldl ASG2_YEAST : 122- 129: vvthg TDTmeet-A ffldl ASPG_BACLI : 89- 96: vvthg TDTleet-A yfldl ASPG_BACSU : 85- 93: vithg TDTmaytsA alsym ASPG_ERWCH : 116- 123: vithg TDTvees-A yflhl ASPQ_ACIGL : 92- 99: vithg TDTmeet-A fflnl ASPQ_PSES7 : 100- 107: vithg TDTleet-A yfldl ASPQ_PSES7 : 234- 242: sygnv TDTaykalA qngak T 20: 15.1802 10( 10) G-x-V-x(0,1)-T-x(1,3)-G Occurences: 10(10) ASG1_ECOLI : 213- 220: tpqpi GvV-TiypG isadv ASG1_YEAST : 134- 140: lqafd GiViTh--G tdtls ASG2_ECOLI : 104- 110: cdktd GfViTh--G tdtme ASG2_HAEIN : 105- 111: ckstd GfViTh--G tdtme ASG2_YEAST : 115- 121: sddya GaVvTh--G tdtme ASPG_BACLI : 82- 88: dggyd GaVvTh--G tdtle ASPG_BACSU : 78- 84: ydayd GfViTh--G tdtma ASPG_ERWCH : 109- 115: rddvd GvViTh--G tdtve ASPQ_ACIGL : 85- 91: kpsvn GvViTh--G tdtme ASPQ_PSES7 : 93- 99: sndvd GiViTh--G tdtle Number of patterns evaluated by Pratt:4298 Total running time: 3 seconds