------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file AROMATIC_AA_PERMEASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename AROMATIC_AA_PERMEASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: MTR_ECOLI 414 MTR_HAEIN 418 TNAB_ECOLI 415 TNAB_PROVU 417 TYRP_ECOLI 403 TYRP_HAEIN 400 TYRQ_HAEIN 406 Pratt run started at Thu Feb 6 18:53:41 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 35.5305 7( 7) G-x(2)-I-G-x-G-M-x(0,2)-L-x(0,2)-P-x(4)-G-x(2)-F 2: 32.3604 7( 7) F-x-P-P-x(4)-L-x(0,1)-F-x(0,1)-P-x-G-F 3: 28.1904 7( 7) P-P-x(4)-L-x(0,1)-F-x(0,1)-P-x-G-F 4: 27.1904 7( 7) G-x-G-M-x(0,2)-L-x(0,2)-P-x(4)-G-x(2)-F 5: 27.1904 7( 7) I-x(2)-G-M-x(0,2)-L-x(0,2)-P-x(4)-G-x(2)-F 6: 24.5203 7( 7) P-x(5)-F-G-x-H-x(4)-S-x(3,4)-Y 7: 24.0203 7( 7) P-x(4)-L-x(0,1)-F-x(0,1)-P-x-G-F 8: 24.0203 7( 7) A-x(3)-S-F-x-G-V-x(0,2)-G 9: 24.0203 7( 7) A-x(2,3)-S-x(0,1)-F-x-G-V-x(2)-G 10: 24.0203 7( 7) Y-x-L-x(1,2)-A-x(0,1)-Y-I-x(3)-G 11: 23.0203 7( 7) G-M-x(0,2)-L-x(0,2)-P-x(4)-G-x(2)-F 12: 20.8503 7( 7) L-x(2)-A-Y-I-x(3)-G 13: 20.3503 7( 7) S-F-L-G-x(3,4)-G 14: 20.3503 7( 7) F-G-x-H-x(4)-S-x(3,4)-Y 15: 19.8503 8( 7) L-x(0,1)-F-x(0,1)-P-x-G-F 16: 19.8503 8( 7) G-x(4)-L-x(2)-Y-x(0,1)-L-x(2,3)-L 17: 19.8503 7( 7) L-x(1,2)-A-x(0,1)-Y-I-x(3)-G 18: 19.8503 7( 7) L-x(2)-A-Y-I-x(1,3)-G 19: 19.8503 8( 7) L-x(4,5)-A-x(0,1)-Y-I-x(3)-G 20: 19.8503 9( 7) L-x(2,3)-L-x(2)-A-x-I-x(2,3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 93.6677 7( 7) F-x-P-P-[ALV]-[ALV]-x(2)-L-x(0,1)-F-x(0,1)-P-x-G-F-[ILV]-x-[AG]-[IL]-[AGS]-x-A-G-x(3)-[ACT]-[FIV]-x-[AC]-[AILV]-[IV]-x-P-x(2)-[LM]-[ATV]-x(2)-[AST]-R-x(3)-[AGP]-[NQST] B 2: 92.6822 7( 7) P-P-[ALV]-[ALV]-x(2)-L-x(0,1)-F-x(0,1)-P-x-G-F-[ILV]-x-[AG]-[IL]-[AGS]-x-A-G-x(3)-[ACT]-[FIV]-x-[AC]-[AILV]-[IV]-x-P-x(2)-[LM]-[ATV]-x(2)-[AST]-R-x(3)-[AGP]-[NQST]-x(2)-[FY] C 3: 92.6822 7( 7) P-[ALV]-[ALV]-x(2)-L-x(0,1)-F-x(0,1)-P-x-G-F-[ILV]-x-[AG]-[IL]-[AGS]-x-A-G-x(3)-[ACT]-[FIV]-x-[AC]-[AILV]-[IV]-x-P-x(2)-[LM]-[ATV]-x(2)-[AST]-R-x(3)-[AGP]-[NQST]-x(2)-[FY]-x-V D 4: 91.6574 8( 7) L-x(0,1)-F-x(0,1)-P-x-G-F-[ILV]-x-[AG]-[IL]-[AGS]-x-A-G-x(3)-[ACT]-[FIV]-x-[AC]-[AILV]-[IV]-x-P-x(2)-[LM]-[ATV]-x(2)-[AST]-R-x(3)-[AGP]-[NQST]-x(2)-[FY]-x-V-x-G-G E 5: 56.7850 7( 7) G-[AT]-x-I-G-[AG]-G-M-x(0,2)-L-x(0,2)-P-x(3)-[AS]-G-x(2)-F-x(2)-[GST]-x(2)-[AIL]-L-[FILV] F 6: 52.0089 7( 7) A-[ILV]-x-[CST]-S-F-[FL]-G-V-x(0,2)-G-[LV]-[FL]-[DE]-x-[IL]-x-[AD]-x-[FL] G 7: 49.9882 7( 7) A-x(2,3)-S-x(0,1)-F-[FL]-G-V-x-[IL]-G-[LV]-[FL]-[DE]-x-[IL]-x-[AD]-x-[FL] H 8: 49.4170 7( 7) I-G-[AG]-G-M-x(0,2)-L-x(0,2)-P-x(3)-[AS]-G-x(2)-F-x(2)-[GST]-x(2)-[AIL]-L-[FILV] I 9: 45.2469 7( 7) G-[AG]-G-M-x(0,2)-L-x(0,2)-P-x(3)-[AS]-G-x(2)-F-x(2)-[GST]-x(2)-[AIL]-L-[FILV] J 10: 44.8677 7( 7) P-x(2)-[FIL]-[ATV]-[AS]-F-G-[FY]-H-[GV]-x-[IMV]-[ACP]-S-x(3,4)-Y K 11: 40.8011 7( 7) Y-[AI]-L-x(1,2)-A-x(0,1)-Y-I-[ST]-[AGS]-[AGNS]-G-[AEGS]-[IL] L 12: 37.9068 7( 7) G-M-x(0,2)-L-x(0,2)-P-x(3)-[AS]-G-x(2)-F-x(2)-[GST]-x(2)-[AIL]-L-[FILV] M 13: 34.3391 7( 7) L-x(2)-A-Y-I-[ST]-[AGS]-[AGNS]-G-[AEGS]-[IL] N 14: 33.3391 7( 7) L-x(1,2)-A-x(0,1)-Y-I-[ST]-[AGS]-[AGNS]-G-[AEGS]-[IL] O 15: 33.3391 8( 7) L-x(4,5)-A-x(0,1)-Y-I-[ST]-[AGS]-[AGNS]-G-[AEGS]-[IL] P 16: 33.1768 7( 7) G-[STV]-[AGT]-[IL]-[AGPT]-L-x(2)-Y-x(0,1)-L-x(2,3)-L-x(3)-[DGS] Q 17: 32.2125 7( 7) F-G-[FY]-H-[GV]-x-[IMV]-[ACP]-S-x(3,4)-Y R 18: 29.5121 8( 7) L-x(2,3)-L-x(2)-A-Y-I-x(2,3)-G-[AEGS]-[IL] S 19: 28.8822 7( 7) S-F-L-G-x(3,4)-G-[ILV]-[FIL]-[DE] T 20: 25.7399 7( 7) L-x(2)-A-Y-I-x(1,3)-G-[AGS]-[GI] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 93.6677 7( 7) F-x-P-P-[ALV]-[ALV]-x(2)-L-x(0,1)-F-x(0,1)-P-x-G-F-[ILV]-x-[AG]-[IL]-[AGS]-x-A-G-x(3)-[ACT]-[FIV]-x-[AC]-[AILV]-[IV]-x-P-x(2)-[LM]-[ATV]-x(2)-[AST]-R-x(3)-[AGP]-[NQST] Occurences: 7(7) MTR_ECOLI : 330- 376: tallt FaPPVVggLlF-PnGFLyAIGyAGlaaTIwAAIvPalLAraSRkrfGS pkfrv MTR_HAEIN : 333- 379: ttlvt FlPPLLlsLqF-PyGFViAIGyAGlaaTIwAAIvPalLAkaSRqkfPQ asykv TNAB_ECOLI : 331- 377: tvllt FlPPALlyLiF-PnGFIyGIGgAGlcaTIwAVIiPavLAikARkkfPN qmftv TNAB_PROVU : 332- 378: sgvlc FtPPLLlcLfF-PnGFLiAIAyAGtaaCVwAIIcPavMAlkARqkfPN sgfkv TNAB_PROVU : 332- 378: sgvlc FtPPLLlcL-FfPnGFLiAIAyAGtaaCVwAIIcPavMAlkARqkfPN sgfkv TYRP_ECOLI : 319- 365: tgait FlPPLAfaL-FyPrGFVmALGyAGvalAVlALIiPslLTwqSRkhnPQ agyrv TYRP_HAEIN : 315- 361: lgllt FiPPLVfaL-FyPeGFIlALGyAGqmfAFyAVVlPvsLVwkARrahAN lpykv TYRQ_HAEIN : 321- 367: ltiaa FlPPLVfaL-FyPeGFItALSyAGllcAFyCLIlPisLAwrTRienPT lpyrv B 2: 92.6822 7( 7) P-P-[ALV]-[ALV]-x(2)-L-x(0,1)-F-x(0,1)-P-x-G-F-[ILV]-x-[AG]-[IL]-[AGS]-x-A-G-x(3)-[ACT]-[FIV]-x-[AC]-[AILV]-[IV]-x-P-x(2)-[LM]-[ATV]-x(2)-[AST]-R-x(3)-[AGP]-[NQST]-x(2)-[FY] Occurences: 7(7) MTR_ECOLI : 332- 379: lltfa PPVVggLlF-PnGFLyAIGyAGlaaTIwAAIvPalLAraSRkrfGSpkF rvwgg MTR_HAEIN : 335- 382: lvtfl PPLLlsLqF-PyGFViAIGyAGlaaTIwAAIvPalLAkaSRqkfPQasY kvygg TNAB_ECOLI : 333- 380: lltfl PPALlyLiF-PnGFIyGIGgAGlcaTIwAVIiPavLAikARkkfPNqmF tvwgg TNAB_PROVU : 334- 381: vlcft PPLLlcLfF-PnGFLiAIAyAGtaaCVwAIIcPavMAlkARqkfPNsgF kvwgg TNAB_PROVU : 334- 381: vlcft PPLLlcL-FfPnGFLiAIAyAGtaaCVwAIIcPavMAlkARqkfPNsgF kvwgg TYRP_ECOLI : 321- 368: aitfl PPLAfaL-FyPrGFVmALGyAGvalAVlALIiPslLTwqSRkhnPQagY rvkgg TYRP_HAEIN : 317- 364: lltfi PPLVfaL-FyPeGFIlALGyAGqmfAFyAVVlPvsLVwkARrahANlpY kvwgg TYRQ_HAEIN : 323- 370: iaafl PPLVfaL-FyPeGFItALSyAGllcAFyCLIlPisLAwrTRienPTlpY rvagg C 3: 92.6822 7( 7) P-[ALV]-[ALV]-x(2)-L-x(0,1)-F-x(0,1)-P-x-G-F-[ILV]-x-[AG]-[IL]-[AGS]-x-A-G-x(3)-[ACT]-[FIV]-x-[AC]-[AILV]-[IV]-x-P-x(2)-[LM]-[ATV]-x(2)-[AST]-R-x(3)-[AGP]-[NQST]-x(2)-[FY]-x-V Occurences: 7(7) MTR_ECOLI : 333- 381: ltfap PVVggLlF-PnGFLyAIGyAGlaaTIwAAIvPalLAraSRkrfGSpkFrV wggkp MTR_HAEIN : 336- 384: vtflp PLLlsLqF-PyGFViAIGyAGlaaTIwAAIvPalLAkaSRqkfPQasYkV yggnf TNAB_ECOLI : 334- 382: ltflp PALlyLiF-PnGFIyGIGgAGlcaTIwAVIiPavLAikARkkfPNqmFtV wggnl TNAB_PROVU : 335- 383: lcftp PLLlcLfF-PnGFLiAIAyAGtaaCVwAIIcPavMAlkARqkfPNsgFkV wggkk TNAB_PROVU : 335- 383: lcftp PLLlcL-FfPnGFLiAIAyAGtaaCVwAIIcPavMAlkARqkfPNsgFkV wggkk TYRP_ECOLI : 322- 370: itflp PLAfaL-FyPrGFVmALGyAGvalAVlALIiPslLTwqSRkhnPQagYrV kggrp TYRP_HAEIN : 318- 366: ltfip PLVfaL-FyPeGFIlALGyAGqmfAFyAVVlPvsLVwkARrahANlpYkV wggnl TYRQ_HAEIN : 324- 372: aaflp PLVfaL-FyPeGFItALSyAGllcAFyCLIlPisLAwrTRienPTlpYrV aggnf D 4: 91.6574 8( 7) L-x(0,1)-F-x(0,1)-P-x-G-F-[ILV]-x-[AG]-[IL]-[AGS]-x-A-G-x(3)-[ACT]-[FIV]-x-[AC]-[AILV]-[IV]-x-P-x(2)-[LM]-[ATV]-x(2)-[AST]-R-x(3)-[AGP]-[NQST]-x(2)-[FY]-x-V-x-G-G Occurences: 8(7) MTR_ECOLI : 338- 384: pvvgg LlF-PnGFLyAIGyAGlaaTIwAAIvPalLAraSRkrfGSpkFrVwGG kpmia MTR_ECOLI : 339- 384: vvggl L-F-PnGFLyAIGyAGlaaTIwAAIvPalLAraSRkrfGSpkFrVwGG kpmia MTR_HAEIN : 341- 387: pllls LqF-PyGFViAIGyAGlaaTIwAAIvPalLAkaSRqkfPQasYkVyGG nfmig TNAB_ECOLI : 339- 385: pally LiF-PnGFIyGIGgAGlcaTIwAVIiPavLAikARkkfPNqmFtVwGG nlipa TNAB_PROVU : 340- 386: plllc LfF-PnGFLiAIAyAGtaaCVwAIIcPavMAlkARqkfPNsgFkVwGG kkliy TNAB_PROVU : 340- 386: plllc L-FfPnGFLiAIAyAGtaaCVwAIIcPavMAlkARqkfPNsgFkVwGG kkliy TYRP_ECOLI : 327- 373: plafa L-FyPrGFVmALGyAGvalAVlALIiPslLTwqSRkhnPQagYrVkGG rpalv TYRP_HAEIN : 323- 369: plvfa L-FyPeGFIlALGyAGqmfAFyAVVlPvsLVwkARrahANlpYkVwGG nltli TYRQ_HAEIN : 329- 375: plvfa L-FyPeGFItALSyAGllcAFyCLIlPisLAwrTRienPTlpYrVaGG nfalv E 5: 56.7850 7( 7) G-[AT]-x-I-G-[AG]-G-M-x(0,2)-L-x(0,2)-P-x(3)-[AS]-G-x(2)-F-x(2)-[GST]-x(2)-[AIL]-L-[FILV] Occurences: 7(7) MTR_ECOLI : 22- 49: vviig GTiIGAGMfsL--PvvmSGawFfwSmaALI ftwfc MTR_HAEIN : 18- 45: amiia GTaIGAGM--LanPtstAGvwFigSilALI ytwfc TNAB_ECOLI : 20- 47: vmvia GTvIGGGMfaL--PvdlAGawFfwGafILI iawfs TNAB_PROVU : 21- 48: gfvlg GAmIGAGMfsL--PtimSGawFinSlfILF ivcff TYRP_ECOLI : 14- 41: vfiva GTtIGAGM--LamPlaaAGvgFsvTliLLI glwal TYRP_HAEIN : 13- 40: tllva GTmIGAGM--LamPltsAGigFgfTlvLLL glwal TYRQ_HAEIN : 15- 42: aliia GTtIGAGM--LamPltsAGmgFgyTllLLV glwal F 6: 52.0089 7( 7) A-[ILV]-x-[CST]-S-F-[FL]-G-V-x(0,2)-G-[LV]-[FL]-[DE]-x-[IL]-x-[AD]-x-[FL] Occurences: 7(7) MTR_ECOLI : 293- 313: vfsnf AVaSSFLGVtlGLFDyLaDlF gfdds MTR_HAEIN : 296- 316: ffaym AIsTSFLGVtlGLFDyIaDlF kfdds TNAB_ECOLI : 294- 314: vfsnl AVaSSFFGVtlGLFDyLaDlF kidns TNAB_PROVU : 295- 315: wfsis AVfCSFLGVaiGLFDyIlAsL kfkdn TYRP_ECOLI : 282- 302: lfadl ALaTSFLGValGLFDyLaDlF qrsnt TYRP_HAEIN : 277- 297: lfstl ALiTSFLGVglGLLEcIeDlL krsfn TYRQ_HAEIN : 284- 304: vfssl ALiTSFLGVmlGVFEgLgDlF kryhl G 7: 49.9882 7( 7) A-x(2,3)-S-x(0,1)-F-[FL]-G-V-x-[IL]-G-[LV]-[FL]-[DE]-x-[IL]-x-[AD]-x-[FL] Occurences: 7(7) MTR_ECOLI : 293- 313: vfsnf AvasS-FLGVtLGLFDyLaDlF gfdds MTR_ECOLI : 293- 313: vfsnf Ava-SsFLGVtLGLFDyLaDlF gfdds MTR_HAEIN : 296- 316: ffaym AistS-FLGVtLGLFDyIaDlF kfdds TNAB_ECOLI : 294- 314: vfsnl AvasS-FFGVtLGLFDyLaDlF kidns TNAB_ECOLI : 294- 314: vfsnl Ava-SsFFGVtLGLFDyLaDlF kidns TNAB_PROVU : 295- 315: wfsis AvfcS-FLGVaIGLFDyIlAsL kfkdn TYRP_ECOLI : 282- 302: lfadl AlatS-FLGVaLGLFDyLaDlF qrsnt TYRP_HAEIN : 277- 297: lfstl AlitS-FLGVgLGLLEcIeDlL krsfn TYRQ_HAEIN : 284- 304: vfssl AlitS-FLGVmLGVFEgLgDlF kryhl H 8: 49.4170 7( 7) I-G-[AG]-G-M-x(0,2)-L-x(0,2)-P-x(3)-[AS]-G-x(2)-F-x(2)-[GST]-x(2)-[AIL]-L-[FILV] Occurences: 7(7) MTR_ECOLI : 25- 49: iggti IGAGMfsL--PvvmSGawFfwSmaALI ftwfc MTR_HAEIN : 21- 45: iagta IGAGM--LanPtstAGvwFigSilALI ytwfc TNAB_ECOLI : 23- 47: iagtv IGGGMfaL--PvdlAGawFfwGafILI iawfs TNAB_PROVU : 24- 48: lggam IGAGMfsL--PtimSGawFinSlfILF ivcff TYRP_ECOLI : 17- 41: vagtt IGAGM--LamPlaaAGvgFsvTliLLI glwal TYRP_HAEIN : 16- 40: vagtm IGAGM--LamPltsAGigFgfTlvLLL glwal TYRQ_HAEIN : 18- 42: iagtt IGAGM--LamPltsAGmgFgyTllLLV glwal I 9: 45.2469 7( 7) G-[AG]-G-M-x(0,2)-L-x(0,2)-P-x(3)-[AS]-G-x(2)-F-x(2)-[GST]-x(2)-[AIL]-L-[FILV] Occurences: 7(7) MTR_ECOLI : 26- 49: ggtii GAGMfsL--PvvmSGawFfwSmaALI ftwfc MTR_HAEIN : 22- 45: agtai GAGM--LanPtstAGvwFigSilALI ytwfc TNAB_ECOLI : 24- 47: agtvi GGGMfaL--PvdlAGawFfwGafILI iawfs TNAB_PROVU : 25- 48: ggami GAGMfsL--PtimSGawFinSlfILF ivcff TYRP_ECOLI : 18- 41: agtti GAGM--LamPlaaAGvgFsvTliLLI glwal TYRP_HAEIN : 17- 40: agtmi GAGM--LamPltsAGigFgfTlvLLL glwal TYRQ_HAEIN : 19- 42: agtti GAGM--LamPltsAGmgFgyTllLLV glwal J 10: 44.8677 7( 7) P-x(2)-[FIL]-[ATV]-[AS]-F-G-[FY]-H-[GV]-x-[IMV]-[ACP]-S-x(3,4)-Y Occurences: 7(7) MTR_ECOLI : 199- 217: llmtl PfcLASFGYHGnVPSlmk-Y ygkdp MTR_ECOLI : 199- 218: llmtl PfcLASFGYHGnVPSlmkyY gkdpk MTR_HAEIN : 202- 220: lltal PvcLVSFGFHGnVPSlvk-Y ydrdg MTR_HAEIN : 202- 221: lltal PvcLVSFGFHGnVPSlvkyY drdgr TNAB_ECOLI : 200- 219: ifmal PvcLASFGFHGnIPSliicY gkrkd TNAB_PROVU : 201- 220: ifiii PyaITSFGYHGnVCSlyklY nqner TYRP_ECOLI : 188- 206: alsai PviFTSFGFHGsVPSivs-Y mdgni TYRP_HAEIN : 183- 201: iisas PvfFTAFGFHGsIPSlnk-Y ldgnv TYRQ_HAEIN : 190- 208: vvsaa PifLTSFGFHViMASvns-Y lggsv K 11: 40.8011 7( 7) Y-[AI]-L-x(1,2)-A-x(0,1)-Y-I-[ST]-[AGS]-[AGNS]-G-[AEGS]-[IL] Occurences: 7(7) MTR_ECOLI : 100- 113: iafvl YILtyA-YISASGSI lhhtf MTR_HAEIN : 96- 109: vafvl YILtyA-YITSGGGI tqnll TNAB_ECOLI : 98- 111: vafvl YILtyA-YISANGAI iseti TNAB_PROVU : 99- 112: lifvl YILiyA-YISAAGSI iyeas TYRP_ECOLI : 92- 105: mmflm YALtaA-YISGAGEL lassi TYRP_ECOLI : 92- 105: mmflm YALt-AaYISGAGEL lassi TYRP_HAEIN : 91- 104: liifl YALiaA-YISGGGSL lkdll TYRP_HAEIN : 91- 104: liifl YALi-AaYISGGGSL lkdll TYRQ_HAEIN : 94- 107: llvll YALsaA-YITGGGSL lsglp TYRQ_HAEIN : 94- 107: llvll YALs-AaYITGGGSL lsglp L 12: 37.9068 7( 7) G-M-x(0,2)-L-x(0,2)-P-x(3)-[AS]-G-x(2)-F-x(2)-[GST]-x(2)-[AIL]-L-[FILV] Occurences: 7(7) MTR_ECOLI : 28- 49: tiiga GMfsL--PvvmSGawFfwSmaALI ftwfc MTR_HAEIN : 24- 45: taiga GM--LanPtstAGvwFigSilALI ytwfc TNAB_ECOLI : 26- 47: tvigg GMfaL--PvdlAGawFfwGafILI iawfs TNAB_PROVU : 27- 48: amiga GMfsL--PtimSGawFinSlfILF ivcff TYRP_ECOLI : 20- 41: ttiga GM--LamPlaaAGvgFsvTliLLI glwal TYRP_HAEIN : 19- 40: tmiga GM--LamPltsAGigFgfTlvLLL glwal TYRQ_HAEIN : 21- 42: ttiga GM--LamPltsAGmgFgyTllLLV glwal M 13: 34.3391 7( 7) L-x(2)-A-Y-I-[ST]-[AGS]-[AGNS]-G-[AEGS]-[IL] Occurences: 7(7) MTR_ECOLI : 102- 113: fvlyi LtyAYISASGSI lhhtf MTR_HAEIN : 98- 109: fvlyi LtyAYITSGGGI tqnll TNAB_ECOLI : 100- 111: fvlyi LtyAYISANGAI iseti TNAB_PROVU : 101- 112: fvlyi LiyAYISAAGSI iyeas TYRP_ECOLI : 94- 105: flmya LtaAYISGAGEL lassi TYRP_HAEIN : 93- 104: iflya LiaAYISGGGSL lkdll TYRQ_HAEIN : 96- 107: vllya LsaAYITGGGSL lsglp N 14: 33.3391 7( 7) L-x(1,2)-A-x(0,1)-Y-I-[ST]-[AGS]-[AGNS]-G-[AEGS]-[IL] Occurences: 7(7) MTR_ECOLI : 102- 113: fvlyi LtyA-YISASGSI lhhtf MTR_HAEIN : 98- 109: fvlyi LtyA-YITSGGGI tqnll TNAB_ECOLI : 100- 111: fvlyi LtyA-YISANGAI iseti TNAB_PROVU : 101- 112: fvlyi LiyA-YISAAGSI iyeas TYRP_ECOLI : 94- 105: flmya LtaA-YISGAGEL lassi TYRP_ECOLI : 94- 105: flmya Lt-AaYISGAGEL lassi TYRP_HAEIN : 93- 104: iflya LiaA-YISGGGSL lkdll TYRP_HAEIN : 93- 104: iflya Li-AaYISGGGSL lkdll TYRQ_HAEIN : 96- 107: vllya LsaA-YITGGGSL lsglp TYRQ_HAEIN : 96- 107: vllya Ls-AaYITGGGSL lsglp O 15: 33.3391 8( 7) L-x(4,5)-A-x(0,1)-Y-I-[ST]-[AGS]-[AGNS]-G-[AEGS]-[IL] Occurences: 8(7) MTR_ECOLI : 99- 113: siafv LyiltyA-YISASGSI lhhtf MTR_HAEIN : 95- 109: svafv LyiltyA-YITSGGGI tqnll TNAB_ECOLI : 97- 111: tvafv LyiltyA-YISANGAI iseti TNAB_PROVU : 98- 112: slifv LyiliyA-YISAAGSI iyeas TYRP_ECOLI : 90- 105: fsmmf LmyaltAaYISGAGEL lassi TYRP_HAEIN : 90- 104: vliif LyaliaA-YISGGGSL lkdll TYRP_HAEIN : 90- 104: vliif Lyali-AaYISGGGSL lkdll TYRQ_HAEIN : 92- 107: lsllv LlyalsAaYITGGGSL lsglp TYRQ_HAEIN : 93- 107: sllvl LyalsaA-YITGGGSL lsglp TYRQ_HAEIN : 93- 107: sllvl Lyals-AaYITGGGSL lsglp P 16: 33.1768 7( 7) G-[STV]-[AGT]-[IL]-[AGPT]-L-x(2)-Y-x(0,1)-L-x(2,3)-L-x(3)-[DGS] Occurences: 7(7) MTR_ECOLI : 300- 316: assfl GVTLGLfdY-Lad-LfgfD dsavg MTR_HAEIN : 235- 252: ksifi GTGLALviYiLwq-LavqG nlprt TNAB_ECOLI : 301- 317: assff GVTLGLfdY-Lad-LfkiD nshgg TNAB_PROVU : 302- 319: fcsfl GVAIGLfdYiLas-LkfkD nktgr TYRP_ECOLI : 289- 305: atsfl GVALGLfdY-Lad-LfqrS ntvgg TYRP_HAEIN : 216- 233: fsilv GSAITLcaYiLwq-LsthG lltqn TYRQ_HAEIN : 223- 240: raili GTAIPLaaY-LvwqLathG vlsqs Q 17: 32.2125 7( 7) F-G-[FY]-H-[GV]-x-[IMV]-[ACP]-S-x(3,4)-Y Occurences: 7(7) MTR_ECOLI : 205- 217: fclas FGYHGnVPSlmk-Y ygkdp MTR_ECOLI : 205- 218: fclas FGYHGnVPSlmkyY gkdpk MTR_HAEIN : 208- 220: vclvs FGFHGnVPSlvk-Y ydrdg MTR_HAEIN : 208- 221: vclvs FGFHGnVPSlvkyY drdgr TNAB_ECOLI : 206- 219: vclas FGFHGnIPSliicY gkrkd TNAB_PROVU : 207- 220: yaits FGYHGnVCSlyklY nqner TYRP_ECOLI : 194- 206: vifts FGFHGsVPSivs-Y mdgni TYRP_HAEIN : 189- 201: vffta FGFHGsIPSlnk-Y ldgnv TYRQ_HAEIN : 196- 208: iflts FGFHViMASvns-Y lggsv R 18: 29.5121 8( 7) L-x(2,3)-L-x(2)-A-Y-I-x(2,3)-G-[AEGS]-[IL] Occurences: 8(7) MTR_ECOLI : 99- 113: siafv Lyi-LtyAYIsasGSI lhhtf MTR_HAEIN : 95- 109: svafv Lyi-LtyAYItsgGGI tqnll TNAB_ECOLI : 97- 111: tvafv Lyi-LtyAYIsanGAI iseti TNAB_PROVU : 98- 112: slifv Lyi-LiyAYIsaaGSI iyeas TYRP_ECOLI : 90- 105: fsmmf LmyaLtaAYIsgaGEL lassi TYRP_HAEIN : 90- 104: vliif Lya-LiaAYIsggGSL lkdll TYRQ_HAEIN : 92- 107: lsllv LlyaLsaAYItggGSL lsglp TYRQ_HAEIN : 93- 107: sllvl Lya-LsaAYItggGSL lsglp S 19: 28.8822 7( 7) S-F-L-G-x(3,4)-G-[ILV]-[FIL]-[DE] Occurences: 7(7) MTR_ECOLI : 297- 307: favas SFLGvtl-GLFD yladl MTR_HAEIN : 300- 310: maist SFLGvtl-GLFD yiadl TNAB_ECOLI : 273- 284: dslvk SFLGtkqhGIIE fcllv TNAB_PROVU : 299- 309: savfc SFLGvai-GLFD yilas TYRP_ECOLI : 286- 296: lalat SFLGval-GLFD yladl TYRP_HAEIN : 281- 291: lalit SFLGvgl-GLLE ciedl TYRQ_HAEIN : 288- 298: lalit SFLGvml-GVFE glgdl T 20: 25.7399 7( 7) L-x(2)-A-Y-I-x(1,3)-G-[AGS]-[GI] Occurences: 7(7) MTR_ECOLI : 102- 113: fvlyi LtyAYIsasGSI lhhtf MTR_HAEIN : 98- 108: fvlyi LtyAYIts-GGG itqnl MTR_HAEIN : 98- 109: fvlyi LtyAYItsgGGI tqnll TNAB_ECOLI : 100- 111: fvlyi LtyAYIsanGAI iseti TNAB_PROVU : 101- 112: fvlyi LiyAYIsaaGSI iyeas TYRP_ECOLI : 94- 103: flmya LtaAYIs--GAG ellas TYRP_HAEIN : 93- 102: iflya LiaAYIs--GGG sllkd TYRQ_HAEIN : 96- 105: vllya LsaAYIt--GGG sllsg Number of patterns evaluated by Pratt:18526 Total running time: 9 seconds