------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file ARGININOSUCCIN_SYN_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ARGININOSUCCIN_SYN_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ASSY_BOVIN 412 ASSY_ECOLI 446 ASSY_HAEIN 444 ASSY_HUMAN 412 ASSY_METBA 396 ASSY_METVA 397 ASSY_MOUSE 412 ASSY_RAT 412 ASSY_STRCO 487 ASSY_STRLA 481 ASSY_YEAST 420 Pratt run started at Thu Feb 6 18:53:31 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 37.0305 11( 11) G-x(2)-D-x(2)-E-x-R-x(4)-K-x-R-x(2)-Y-E-x(1,2)-P 2: 36.5305 11( 11) D-x(2)-E-x-R-x(4)-K-x-R-x(2)-Y-E-x(1,2)-P-x(3,4)-L 3: 36.5305 11( 11) G-x(2)-D-x(0,1)-I-x(0,1)-E-x-R-x(4)-K-x-R-x(2)-Y-E 4: 36.5305 11( 11) G-x(5)-E-x-R-x(4)-K-x-R-x(2)-Y-E-x(1,2)-P-x(3,4)-L 5: 36.5305 11( 11) G-x(1,3)-G-x(2)-D-x(2)-E-x-R-x(4)-K-x-R-x(2)-Y-E 6: 36.0305 11( 11) G-x(1,3)-G-x(1,2)-D-x(2)-E-x-R-x(4)-K-x-R-x(2)-Y-E 7: 33.3604 11( 11) G-x-T-x-K-G-N-D-x(2)-R-F 8: 33.3604 11( 11) A-x-S-G-G-L-D-T-S 9: 32.8604 11( 11) G-x(0,1)-T-x-K-G-N-D-x(2)-R-F 10: 32.3604 11( 11) E-x-R-x(4)-K-x-R-x(2)-Y-E-x(1,2)-P-x(3,4)-L 11: 32.3604 12( 11) I-x(0,1)-E-x-R-x(4)-K-x-R-x(2)-Y-E-x(1,2)-P 12: 32.3604 11( 11) D-x(0,1)-I-x(0,1)-E-x-R-x(4)-K-x-R-x(2)-Y-E 13: 32.3604 12( 11) A-x(1,3)-S-G-G-L-D-T-S 14: 29.1904 11( 11) T-x-K-G-N-D-x(2)-R-F 15: 29.1904 11( 11) S-G-G-L-D-T-S 16: 28.1904 11( 11) R-x(4)-K-x-R-x(2)-Y-E-x(1,2)-P-x(3,4)-L 17: 27.1904 11( 11) G-x-T-x(0,2)-G-x(0,2)-N-D-x(2)-R-F 18: 25.0203 11( 11) K-G-N-D-x(2)-R-F 19: 25.0203 11( 11) G-G-L-D-T-S 20: 24.0203 11( 11) K-x-R-x(2)-Y-E-x(1,2)-P-x(3,4)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 73.2668 11( 11) G-x(1,3)-G-x(2)-D-x-[IV]-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x-[AP]-[AGP]-x(2)-[ILV]-L-x(2)-[APV]-x(3)-[ILP] B 2: 72.7668 11( 11) G-x(1,3)-G-x(1,2)-D-x-[IV]-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x-[AP]-[AGP]-x(2)-[ILV]-L-x(2)-[APV]-x(3)-[ILP] C 3: 70.0420 11( 11) G-x(2)-D-x(0,1)-I-x(0,1)-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x-[AP]-[AGP]-x(2)-[ILV]-L-x(2)-[APV]-x(3)-[ILP] D 4: 65.8719 11( 11) D-x(0,1)-I-x(0,1)-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x-[AP]-[AGP]-x(2)-[ILV]-L-x(2)-[APV]-x(3)-[ILP] E 5: 64.3758 11( 11) G-x(2)-D-x-[IV]-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x(1,2)-P-x(3,4)-L-x(2)-[AIPV]-x(3)-[ILP] F 6: 61.0408 11( 11) G-x(2)-D-x-[IV]-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x(1,2)-P-[AGL]-x(2)-[ILV] G 7: 60.2058 11( 11) D-x-[IV]-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x(1,2)-P-x(3,4)-L-x(2)-[AIPV]-x(3)-[ILP] H 8: 53.1458 12( 11) I-x(0,1)-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x(1,2)-P-[AGL]-x(2)-[ILV] I 9: 52.8109 11( 11) E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x(1,2)-P-x(3,4)-L-x(2)-[AIPV]-x(3)-[ILP] J 10: 48.0494 11( 11) A-[FY]-S-G-G-L-D-T-S-[ACV]-x-[ILV]-x(2)-[LM]-x-[DEQ] K 11: 45.4669 11( 11) R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x(1,2)-P-x(3,4)-L-x(2)-[AIPV]-x(3)-[ILP] L 12: 43.8649 12( 11) A-x(1,3)-S-G-G-L-D-T-S-[ACV]-x-[ILV]-x(2)-[LM]-x-[DEQ] M 13: 40.6948 11( 11) S-G-G-L-D-T-S-[ACV]-x-[ILV]-x(2)-[LM]-x-[DEQ] N 14: 36.5248 11( 11) G-G-L-D-T-S-[ACV]-x-[ILV]-x(2)-[LM]-x-[DEQ] O 15: 35.3401 11( 11) K-[AS]-R-[EG]-x-Y-E-x(1,2)-P-x(3,4)-L-x(2)-[AIPV]-x(3)-[ILP] P 16: 33.3604 11( 11) G-x-T-x-K-G-N-D-x(2)-R-F Q 17: 32.8604 11( 11) G-x(0,1)-T-x-K-G-N-D-x(2)-R-F R 18: 29.8726 11( 11) G-[ACS]-T-x(0,2)-G-x(0,2)-N-D-x(2)-R-F S 19: 29.1904 11( 11) T-x-K-G-N-D-x(2)-R-F T 20: 29.1904 11( 11) S-G-G-L-D-T-S Best patterns with alignements: fitness hits(seqs) Pattern A 1: 73.2668 11( 11) G-x(1,3)-G-x(2)-D-x-[IV]-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x-[AP]-[AGP]-x(2)-[ILV]-L-x(2)-[APV]-x(3)-[ILP] Occurences: 11(11) ASSY_BOVIN : 262- 297: vagkh Gv--GriDiVENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_ECOLI : 271- 306: iggrh Gl--GmsDqIENRiIEaKSRGiYEaPGmaLLhiAyerL ltgih ASSY_HAEIN : 273- 308: iggrh Gl--GmsDqIENRiIEaKSRGiYEaPGmaLLhiAyerL vtgih ASSY_HUMAN : 262- 297: vagkh Gv--GriDiVENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_METBA : 249- 284: iagen Gv--GrtDmIEDRvLGlKAREnYEhPAatVLrqPnsrP lrnss ASSY_METVA : 252- 287: lagrn Gv--GrvDiIEDRvLGlKSREnYEcPGaiLLitAhkaL eqlvl ASSY_MOUSE : 262- 297: vagkh Gv--GriDiVENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_RAT : 262- 297: vagkh Gv--GriDiVENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_STRCO : 276- 313: tpsaa GtamGmsDqIENRiIEaKSRGiYEaPGmaLLhaAyerL vnaih ASSY_STRLA : 271- 306: iggrh Gl--GmsDqIENRiIEaKSRGiYEaPGmaLLhiVyerL vnaih ASSY_YEAST : 265- 300: laran Gv--GriDiVEDRyINlKSRGcYEqAPltVLrkAhvdL egltl B 2: 72.7668 11( 11) G-x(1,3)-G-x(1,2)-D-x-[IV]-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x-[AP]-[AGP]-x(2)-[ILV]-L-x(2)-[APV]-x(3)-[ILP] Occurences: 11(11) ASSY_BOVIN : 262- 297: vagkh Gv--GriDiVENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_ECOLI : 271- 306: iggrh Gl--GmsDqIENRiIEaKSRGiYEaPGmaLLhiAyerL ltgih ASSY_HAEIN : 273- 308: iggrh Gl--GmsDqIENRiIEaKSRGiYEaPGmaLLhiAyerL vtgih ASSY_HUMAN : 262- 297: vagkh Gv--GriDiVENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_METBA : 249- 284: iagen Gv--GrtDmIEDRvLGlKAREnYEhPAatVLrqPnsrP lrnss ASSY_METVA : 252- 287: lagrn Gv--GrvDiIEDRvLGlKSREnYEcPGaiLLitAhkaL eqlvl ASSY_MOUSE : 262- 297: vagkh Gv--GriDiVENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_RAT : 262- 297: vagkh Gv--GriDiVENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_STRCO : 276- 313: tpsaa GtamGmsDqIENRiIEaKSRGiYEaPGmaLLhaAyerL vnaih ASSY_STRLA : 271- 306: iggrh Gl--GmsDqIENRiIEaKSRGiYEaPGmaLLhiVyerL vnaih ASSY_YEAST : 265- 300: laran Gv--GriDiVEDRyINlKSRGcYEqAPltVLrkAhvdL egltl C 3: 70.0420 11( 11) G-x(2)-D-x(0,1)-I-x(0,1)-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x-[AP]-[AGP]-x(2)-[ILV]-L-x(2)-[APV]-x(3)-[ILP] Occurences: 11(11) ASSY_BOVIN : 264- 297: gkhgv GriD-IvENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_ECOLI : 273- 306: grhgl GmsDqI-ENRiIEaKSRGiYEaPGmaLLhiAyerL ltgih ASSY_HAEIN : 275- 308: grhgl GmsDqI-ENRiIEaKSRGiYEaPGmaLLhiAyerL vtgih ASSY_HUMAN : 264- 297: gkhgv GriD-IvENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_METBA : 251- 284: gengv GrtDmI-EDRvLGlKAREnYEhPAatVLrqPnsrP lrnss ASSY_METVA : 254- 287: grngv GrvDiI-EDRvLGlKSREnYEcPGaiLLitAhkaL eqlvl ASSY_METVA : 254- 287: grngv GrvD-IiEDRvLGlKSREnYEcPGaiLLitAhkaL eqlvl ASSY_MOUSE : 264- 297: gkhgv GriD-IvENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_RAT : 264- 297: gkhgv GriD-IvENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_STRCO : 280- 313: agtam GmsDqI-ENRiIEaKSRGiYEaPGmaLLhaAyerL vnaih ASSY_STRLA : 273- 306: grhgl GmsDqI-ENRiIEaKSRGiYEaPGmaLLhiVyerL vnaih ASSY_YEAST : 267- 300: rangv GriD-IvEDRyINlKSRGcYEqAPltVLrkAhvdL egltl D 4: 65.8719 11( 11) D-x(0,1)-I-x(0,1)-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x-[AP]-[AGP]-x(2)-[ILV]-L-x(2)-[APV]-x(3)-[ILP] Occurences: 11(11) ASSY_BOVIN : 267- 297: gvgri D-IvENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_ECOLI : 276- 306: glgms DqI-ENRiIEaKSRGiYEaPGmaLLhiAyerL ltgih ASSY_HAEIN : 278- 308: glgms DqI-ENRiIEaKSRGiYEaPGmaLLhiAyerL vtgih ASSY_HUMAN : 267- 297: gvgri D-IvENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_METBA : 254- 284: gvgrt DmI-EDRvLGlKAREnYEhPAatVLrqPnsrP lrnss ASSY_METVA : 257- 287: gvgrv DiI-EDRvLGlKSREnYEcPGaiLLitAhkaL eqlvl ASSY_METVA : 257- 287: gvgrv D-IiEDRvLGlKSREnYEcPGaiLLitAhkaL eqlvl ASSY_MOUSE : 267- 297: gvgri D-IvENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_RAT : 267- 297: gvgri D-IvENRfIGmKSRGiYEtPAgtILyhAhldI eaftm ASSY_STRCO : 283- 313: amgms DqI-ENRiIEaKSRGiYEaPGmaLLhaAyerL vnaih ASSY_STRLA : 276- 306: glgms DqI-ENRiIEaKSRGiYEaPGmaLLhiVyerL vnaih ASSY_YEAST : 270- 300: gvgri D-IvEDRyINlKSRGcYEqAPltVLrkAhvdL egltl E 5: 64.3758 11( 11) G-x(2)-D-x-[IV]-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x(1,2)-P-x(3,4)-L-x(2)-[AIPV]-x(3)-[ILP] Occurences: 11(11) ASSY_BOVIN : 264- 297: gkhgv GriDiVENRfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_ECOLI : 273- 306: grhgl GmsDqIENRiIEaKSRGiYEa-PgmalLhiAyerL ltgih ASSY_HAEIN : 275- 308: grhgl GmsDqIENRiIEaKSRGiYEa-PgmalLhiAyerL vtgih ASSY_HUMAN : 264- 297: gkhgv GriDiVENRfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_METBA : 251- 284: gengv GrtDmIEDRvLGlKAREnYEh-PaatvLrqPnsrP lrnss ASSY_METVA : 254- 287: grngv GrvDiIEDRvLGlKSREnYEc-PgailLitAhkaL eqlvl ASSY_MOUSE : 264- 297: gkhgv GriDiVENRfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_RAT : 264- 297: gkhgv GriDiVENRfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_STRCO : 280- 313: agtam GmsDqIENRiIEaKSRGiYEa-PgmalLhaAyerL vnaih ASSY_STRLA : 273- 306: grhgl GmsDqIENRiIEaKSRGiYEa-PgmalLhiVyerL vnaih ASSY_YEAST : 267- 300: rangv GriDiVEDRyINlKSRGcYEqaPltv-LrkAhvdL egltl F 6: 61.0408 11( 11) G-x(2)-D-x-[IV]-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x(1,2)-P-[AGL]-x(2)-[ILV] Occurences: 11(11) ASSY_BOVIN : 264- 289: gkhgv GriDiVENRfIGmKSRGiYEt-PAgtI lyhah ASSY_ECOLI : 273- 298: grhgl GmsDqIENRiIEaKSRGiYEa-PGmaL lhiay ASSY_HAEIN : 275- 300: grhgl GmsDqIENRiIEaKSRGiYEa-PGmaL lhiay ASSY_HUMAN : 264- 289: gkhgv GriDiVENRfIGmKSRGiYEt-PAgtI lyhah ASSY_METBA : 251- 276: gengv GrtDmIEDRvLGlKAREnYEh-PAatV lrqpn ASSY_METVA : 254- 279: grngv GrvDiIEDRvLGlKSREnYEc-PGaiL litah ASSY_MOUSE : 264- 289: gkhgv GriDiVENRfIGmKSRGiYEt-PAgtI lyhah ASSY_RAT : 264- 289: gkhgv GriDiVENRfIGmKSRGiYEt-PAgtI lyhah ASSY_STRCO : 280- 305: agtam GmsDqIENRiIEaKSRGiYEa-PGmaL lhaay ASSY_STRLA : 273- 298: grhgl GmsDqIENRiIEaKSRGiYEa-PGmaL lhivy ASSY_YEAST : 267- 293: rangv GriDiVEDRyINlKSRGcYEqaPLtvL rkahv G 7: 60.2058 11( 11) D-x-[IV]-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x(1,2)-P-x(3,4)-L-x(2)-[AIPV]-x(3)-[ILP] Occurences: 11(11) ASSY_BOVIN : 267- 297: gvgri DiVENRfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_ECOLI : 276- 306: glgms DqIENRiIEaKSRGiYEa-PgmalLhiAyerL ltgih ASSY_HAEIN : 278- 308: glgms DqIENRiIEaKSRGiYEa-PgmalLhiAyerL vtgih ASSY_HUMAN : 267- 297: gvgri DiVENRfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_METBA : 254- 284: gvgrt DmIEDRvLGlKAREnYEh-PaatvLrqPnsrP lrnss ASSY_METVA : 257- 287: gvgrv DiIEDRvLGlKSREnYEc-PgailLitAhkaL eqlvl ASSY_MOUSE : 267- 297: gvgri DiVENRfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_RAT : 267- 297: gvgri DiVENRfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_STRCO : 283- 313: amgms DqIENRiIEaKSRGiYEa-PgmalLhaAyerL vnaih ASSY_STRLA : 276- 306: glgms DqIENRiIEaKSRGiYEa-PgmalLhiVyerL vnaih ASSY_YEAST : 270- 300: gvgri DiVEDRyINlKSRGcYEqaPltv-LrkAhvdL egltl H 8: 53.1458 12( 11) I-x(0,1)-E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x(1,2)-P-[AGL]-x(2)-[ILV] Occurences: 12(11) ASSY_BOVIN : 268- 289: vgrid IvENRfIGmKSRGiYEt-PAgtI lyhah ASSY_ECOLI : 278- 298: gmsdq I-ENRiIEaKSRGiYEa-PGmaL lhiay ASSY_HAEIN : 280- 300: gmsdq I-ENRiIEaKSRGiYEa-PGmaL lhiay ASSY_HUMAN : 268- 289: vgrid IvENRfIGmKSRGiYEt-PAgtI lyhah ASSY_METBA : 256- 276: grtdm I-EDRvLGlKAREnYEh-PAatV lrqpn ASSY_METVA : 258- 279: vgrvd IiEDRvLGlKSREnYEc-PGaiL litah ASSY_METVA : 259- 279: grvdi I-EDRvLGlKSREnYEc-PGaiL litah ASSY_MOUSE : 268- 289: vgrid IvENRfIGmKSRGiYEt-PAgtI lyhah ASSY_RAT : 268- 289: vgrid IvENRfIGmKSRGiYEt-PAgtI lyhah ASSY_STRCO : 285- 305: gmsdq I-ENRiIEaKSRGiYEa-PGmaL lhaay ASSY_STRLA : 278- 298: gmsdq I-ENRiIEaKSRGiYEa-PGmaL lhivy ASSY_YEAST : 271- 293: vgrid IvEDRyINlKSRGcYEqaPLtvL rkahv I 9: 52.8109 11( 11) E-[DN]-R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x(1,2)-P-x(3,4)-L-x(2)-[AIPV]-x(3)-[ILP] Occurences: 11(11) ASSY_BOVIN : 270- 297: ridiv ENRfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_ECOLI : 279- 306: msdqi ENRiIEaKSRGiYEa-PgmalLhiAyerL ltgih ASSY_HAEIN : 281- 308: msdqi ENRiIEaKSRGiYEa-PgmalLhiAyerL vtgih ASSY_HUMAN : 270- 297: ridiv ENRfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_METBA : 257- 284: rtdmi EDRvLGlKAREnYEh-PaatvLrqPnsrP lrnss ASSY_METVA : 260- 287: rvdii EDRvLGlKSREnYEc-PgailLitAhkaL eqlvl ASSY_MOUSE : 270- 297: ridiv ENRfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_RAT : 270- 297: ridiv ENRfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_STRCO : 286- 313: msdqi ENRiIEaKSRGiYEa-PgmalLhaAyerL vnaih ASSY_STRLA : 279- 306: msdqi ENRiIEaKSRGiYEa-PgmalLhiVyerL vnaih ASSY_YEAST : 273- 300: ridiv EDRyINlKSRGcYEqaPltv-LrkAhvdL egltl J 10: 48.0494 11( 11) A-[FY]-S-G-G-L-D-T-S-[ACV]-x-[ILV]-x(2)-[LM]-x-[DEQ] Occurences: 11(11) ASSY_BOVIN : 10- 26: gsvvl AYSGGLDTSCiLvwLkE qgydv ASSY_ECOLI : 16- 32: qrigi AFSGGLDTSAaLlwMrQ kgavp ASSY_HAEIN : 18- 34: qkvgi AFSGGLDTSAaLlwMrQ kgavp ASSY_HUMAN : 10- 26: gsvvl AYSGGLDTSCiLvwLkE qgydv ASSY_METBA : 8- 24: kkval AYSGGLDTSVcIpiLkE kygyd ASSY_METVA : 9- 25: kiavl AYSGGLDTSCcLklLeD kynyk ASSY_MOUSE : 10- 26: gsvvl AYSGGLDTSCiLvwLkE qgydv ASSY_RAT : 10- 26: gsvvl AYSGGLDTSCiLvwLkE qgydv ASSY_STRCO : 23- 39: ervgi AFSGGLDTSVaVawMrD kgavp ASSY_STRLA : 16- 32: ervgi AFSGGLDTSVaVawMrD kgavp ASSY_YEAST : 9- 25: gkvcl AYSGGLDTSViLawLlD qatev K 11: 45.4669 11( 11) R-x-[IL]-[EGN]-x-K-[AS]-R-[EG]-x-Y-E-x(1,2)-P-x(3,4)-L-x(2)-[AIPV]-x(3)-[ILP] Occurences: 11(11) ASSY_BOVIN : 272- 297: diven RfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_ECOLI : 281- 306: dqien RiIEaKSRGiYEa-PgmalLhiAyerL ltgih ASSY_HAEIN : 283- 308: dqien RiIEaKSRGiYEa-PgmalLhiAyerL vtgih ASSY_HUMAN : 272- 297: diven RfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_METBA : 259- 284: dmied RvLGlKAREnYEh-PaatvLrqPnsrP lrnss ASSY_METVA : 262- 287: diied RvLGlKSREnYEc-PgailLitAhkaL eqlvl ASSY_MOUSE : 272- 297: diven RfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_RAT : 272- 297: diven RfIGmKSRGiYEt-PagtiLyhAhldI eaftm ASSY_STRCO : 288- 313: dqien RiIEaKSRGiYEa-PgmalLhaAyerL vnaih ASSY_STRLA : 281- 306: dqien RiIEaKSRGiYEa-PgmalLhiVyerL vnaih ASSY_YEAST : 275- 300: dived RyINlKSRGcYEqaPltv-LrkAhvdL egltl L 12: 43.8649 12( 11) A-x(1,3)-S-G-G-L-D-T-S-[ACV]-x-[ILV]-x(2)-[LM]-x-[DEQ] Occurences: 12(11) ASSY_BOVIN : 10- 26: gsvvl Ay--SGGLDTSCiLvwLkE qgydv ASSY_ECOLI : 16- 32: qrigi Af--SGGLDTSAaLlwMrQ kgavp ASSY_HAEIN : 18- 34: qkvgi Af--SGGLDTSAaLlwMrQ kgavp ASSY_HUMAN : 10- 26: gsvvl Ay--SGGLDTSCiLvwLkE qgydv ASSY_METBA : 6- 24: makkv AlaySGGLDTSVcIpiLkE kygyd ASSY_METBA : 8- 24: kkval Ay--SGGLDTSVcIpiLkE kygyd ASSY_METVA : 9- 25: kiavl Ay--SGGLDTSCcLklLeD kynyk ASSY_MOUSE : 10- 26: gsvvl Ay--SGGLDTSCiLvwLkE qgydv ASSY_RAT : 10- 26: gsvvl Ay--SGGLDTSCiLvwLkE qgydv ASSY_STRCO : 23- 39: ervgi Af--SGGLDTSVaVawMrD kgavp ASSY_STRLA : 16- 32: ervgi Af--SGGLDTSVaVawMrD kgavp ASSY_YEAST : 9- 25: gkvcl Ay--SGGLDTSViLawLlD qatev M 13: 40.6948 11( 11) S-G-G-L-D-T-S-[ACV]-x-[ILV]-x(2)-[LM]-x-[DEQ] Occurences: 11(11) ASSY_BOVIN : 12- 26: vvlay SGGLDTSCiLvwLkE qgydv ASSY_ECOLI : 18- 32: igiaf SGGLDTSAaLlwMrQ kgavp ASSY_HAEIN : 20- 34: vgiaf SGGLDTSAaLlwMrQ kgavp ASSY_HUMAN : 12- 26: vvlay SGGLDTSCiLvwLkE qgydv ASSY_METBA : 10- 24: valay SGGLDTSVcIpiLkE kygyd ASSY_METVA : 11- 25: avlay SGGLDTSCcLklLeD kynyk ASSY_MOUSE : 12- 26: vvlay SGGLDTSCiLvwLkE qgydv ASSY_RAT : 12- 26: vvlay SGGLDTSCiLvwLkE qgydv ASSY_STRCO : 25- 39: vgiaf SGGLDTSVaVawMrD kgavp ASSY_STRLA : 18- 32: vgiaf SGGLDTSVaVawMrD kgavp ASSY_YEAST : 11- 25: vclay SGGLDTSViLawLlD qatev N 14: 36.5248 11( 11) G-G-L-D-T-S-[ACV]-x-[ILV]-x(2)-[LM]-x-[DEQ] Occurences: 11(11) ASSY_BOVIN : 13- 26: vlays GGLDTSCiLvwLkE qgydv ASSY_ECOLI : 19- 32: giafs GGLDTSAaLlwMrQ kgavp ASSY_HAEIN : 21- 34: giafs GGLDTSAaLlwMrQ kgavp ASSY_HUMAN : 13- 26: vlays GGLDTSCiLvwLkE qgydv ASSY_METBA : 11- 24: alays GGLDTSVcIpiLkE kygyd ASSY_METVA : 12- 25: vlays GGLDTSCcLklLeD kynyk ASSY_MOUSE : 13- 26: vlays GGLDTSCiLvwLkE qgydv ASSY_RAT : 13- 26: vlays GGLDTSCiLvwLkE qgydv ASSY_STRCO : 26- 39: giafs GGLDTSVaVawMrD kgavp ASSY_STRLA : 19- 32: giafs GGLDTSVaVawMrD kgavp ASSY_YEAST : 12- 25: clays GGLDTSViLawLlD qatev O 15: 35.3401 11( 11) K-[AS]-R-[EG]-x-Y-E-x(1,2)-P-x(3,4)-L-x(2)-[AIPV]-x(3)-[ILP] Occurences: 11(11) ASSY_BOVIN : 277- 297: rfigm KSRGiYEt-PagtiLyhAhldI eaftm ASSY_ECOLI : 286- 306: riiea KSRGiYEa-PgmalLhiAyerL ltgih ASSY_HAEIN : 288- 308: riiea KSRGiYEa-PgmalLhiAyerL vtgih ASSY_HUMAN : 277- 297: rfigm KSRGiYEt-PagtiLyhAhldI eaftm ASSY_METBA : 264- 284: rvlgl KAREnYEh-PaatvLrqPnsrP lrnss ASSY_METVA : 267- 287: rvlgl KSREnYEc-PgailLitAhkaL eqlvl ASSY_MOUSE : 277- 297: rfigm KSRGiYEt-PagtiLyhAhldI eaftm ASSY_RAT : 277- 297: rfigm KSRGiYEt-PagtiLyhAhldI eaftm ASSY_STRCO : 293- 313: riiea KSRGiYEa-PgmalLhaAyerL vnaih ASSY_STRLA : 286- 306: riiea KSRGiYEa-PgmalLhiVyerL vnaih ASSY_YEAST : 280- 300: ryinl KSRGcYEqaPltv-LrkAhvdL egltl P 16: 33.3604 11( 11) G-x-T-x-K-G-N-D-x(2)-R-F Occurences: 11(11) ASSY_BOVIN : 117- 128: kyvsh GaTgKGNDqiRF eltcy ASSY_ECOLI : 128- 139: niwgd GsTyKGNDieRF yrygl ASSY_HAEIN : 130- 141: niwgd GsTfKGNDieRF yrygl ASSY_HUMAN : 117- 128: kyvsh GaTgKGNDqvRF elscy ASSY_METBA : 116- 127: valah GcTgKGNDqlRF eavfr ASSY_METVA : 117- 128: daish GcTgKGNDqfRF esvir ASSY_MOUSE : 117- 128: kyvsh GaTgKGNDqvRF eltcy ASSY_RAT : 117- 128: kyvsh GaTgKGNDqvRF eltcy ASSY_STRCO : 135- 146: qiwgd GsTfKGNDieRF yrygl ASSY_STRLA : 128- 139: qiwgd GsTfKGNDieRF yrygl ASSY_YEAST : 116- 127: favsh GcTgKGNDqiRF elsfy Q 17: 32.8604 11( 11) G-x(0,1)-T-x-K-G-N-D-x(2)-R-F Occurences: 11(11) ASSY_BOVIN : 117- 128: kyvsh GaTgKGNDqiRF eltcy ASSY_ECOLI : 128- 139: niwgd GsTyKGNDieRF yrygl ASSY_HAEIN : 130- 141: niwgd GsTfKGNDieRF yrygl ASSY_HUMAN : 117- 128: kyvsh GaTgKGNDqvRF elscy ASSY_METBA : 116- 127: valah GcTgKGNDqlRF eavfr ASSY_METVA : 117- 128: daish GcTgKGNDqfRF esvir ASSY_MOUSE : 117- 128: kyvsh GaTgKGNDqvRF eltcy ASSY_RAT : 117- 128: kyvsh GaTgKGNDqvRF eltcy ASSY_STRCO : 135- 146: qiwgd GsTfKGNDieRF yrygl ASSY_STRLA : 128- 139: qiwgd GsTfKGNDieRF yrygl ASSY_YEAST : 116- 127: favsh GcTgKGNDqiRF elsfy R 18: 29.8726 11( 11) G-[ACS]-T-x(0,2)-G-x(0,2)-N-D-x(2)-R-F Occurences: 11(11) ASSY_BOVIN : 117- 128: kyvsh GATgkG--NDqiRF eltcy ASSY_BOVIN : 117- 128: kyvsh GAT--GkgNDqiRF eltcy ASSY_ECOLI : 128- 139: niwgd GSTykG--NDieRF yrygl ASSY_HAEIN : 130- 141: niwgd GSTfkG--NDieRF yrygl ASSY_HUMAN : 117- 128: kyvsh GATgkG--NDqvRF elscy ASSY_HUMAN : 117- 128: kyvsh GAT--GkgNDqvRF elscy ASSY_METBA : 116- 127: valah GCTgkG--NDqlRF eavfr ASSY_METBA : 116- 127: valah GCT--GkgNDqlRF eavfr ASSY_METVA : 117- 128: daish GCTgkG--NDqfRF esvir ASSY_METVA : 117- 128: daish GCT--GkgNDqfRF esvir ASSY_MOUSE : 117- 128: kyvsh GATgkG--NDqvRF eltcy ASSY_MOUSE : 117- 128: kyvsh GAT--GkgNDqvRF eltcy ASSY_RAT : 117- 128: kyvsh GATgkG--NDqvRF eltcy ASSY_RAT : 117- 128: kyvsh GAT--GkgNDqvRF eltcy ASSY_STRCO : 135- 146: qiwgd GSTfkG--NDieRF yrygl ASSY_STRLA : 128- 139: qiwgd GSTfkG--NDieRF yrygl ASSY_YEAST : 116- 127: favsh GCTgkG--NDqiRF elsfy ASSY_YEAST : 116- 127: favsh GCT--GkgNDqiRF elsfy S 19: 29.1904 11( 11) T-x-K-G-N-D-x(2)-R-F Occurences: 11(11) ASSY_BOVIN : 119- 128: vshga TgKGNDqiRF eltcy ASSY_ECOLI : 130- 139: wgdgs TyKGNDieRF yrygl ASSY_HAEIN : 132- 141: wgdgs TfKGNDieRF yrygl ASSY_HUMAN : 119- 128: vshga TgKGNDqvRF elscy ASSY_METBA : 118- 127: lahgc TgKGNDqlRF eavfr ASSY_METVA : 119- 128: ishgc TgKGNDqfRF esvir ASSY_MOUSE : 119- 128: vshga TgKGNDqvRF eltcy ASSY_RAT : 119- 128: vshga TgKGNDqvRF eltcy ASSY_STRCO : 137- 146: wgdgs TfKGNDieRF yrygl ASSY_STRLA : 130- 139: wgdgs TfKGNDieRF yrygl ASSY_YEAST : 118- 127: vshgc TgKGNDqiRF elsfy T 20: 29.1904 11( 11) S-G-G-L-D-T-S Occurences: 11(11) ASSY_BOVIN : 12- 18: vvlay SGGLDTS cilvw ASSY_ECOLI : 18- 24: igiaf SGGLDTS aallw ASSY_HAEIN : 20- 26: vgiaf SGGLDTS aallw ASSY_HUMAN : 12- 18: vvlay SGGLDTS cilvw ASSY_METBA : 10- 16: valay SGGLDTS vcipi ASSY_METVA : 11- 17: avlay SGGLDTS cclkl ASSY_MOUSE : 12- 18: vvlay SGGLDTS cilvw ASSY_RAT : 12- 18: vvlay SGGLDTS cilvw ASSY_STRCO : 25- 31: vgiaf SGGLDTS vavaw ASSY_STRLA : 18- 24: vgiaf SGGLDTS vavaw ASSY_YEAST : 11- 17: vclay SGGLDTS vilaw Number of patterns evaluated by Pratt:12319 Total running time: 10 seconds