------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 15 sequences from file ARGINASE_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 15 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ARGINASE_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ARGI_AGRT5 324 ARGI_ARATH 342 ARGI_BACSU 296 ARGI_COCIM 322 ARGI_HUMAN 322 ARGI_NEUCR 325 ARGI_RAT 323 ARGI_SCHPO 323 ARGI_XENLA 316 ARGI_YEAST 333 HUTG_BACSU 319 HUTG_KLEAE 222 SPEB_ECOLI 306 SPEB_STRCL 313 YHMF_METFE 285 Pratt run started at Thu Feb 6 18:53:15 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 15( 15) D-A-H-x-D 2: 12.5102 15( 15) A-H-x-D 3: 11.5102 26( 15) G-x-P-x(1,3)-G 4: 11.5102 19( 15) D-x(2,3)-P-x(3,4)-P 5: 11.5102 18( 15) D-x(1,2)-D-x(2,3)-P 6: 11.5102 21( 15) G-x(2,3)-V-x(1,2)-D 7: 11.5102 21( 15) D-x(3,4)-A-x(0,1)-G 8: 11.0102 27( 15) D-x(1,2)-D-x(3,5)-A 9: 11.0102 28( 15) G-x(3,4)-V-x(1,3)-L 10: 11.0102 28( 15) E-x(1,3)-L-x(2,3)-G 11: 11.0102 29( 15) L-x(1,3)-E-x(1,2)-L 12: 11.0102 33( 15) A-x(1,3)-L-x(3,4)-L 13: 11.0102 29( 15) L-x(0,1)-D-x(0,2)-P 14: 11.0102 24( 15) D-x(2,3)-L-x(0,2)-D 15: 11.0102 30( 15) L-x(0,2)-D-x(2,3)-A 16: 11.0102 31( 15) G-x(1,3)-S-x(1,2)-A 17: 11.0102 24( 15) G-x(1,3)-P-x(2,3)-L 18: 11.0102 30( 15) L-x(0,2)-D-x(3,4)-D 19: 11.0102 19( 15) G-x(1,2)-A-x(0,2)-V 20: 11.0102 21( 15) V-x(1,3)-D-x(2,3)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 16.6802 15( 15) D-A-H-x-D B 2: 16.2285 16( 15) D-x(1,2)-D-x(3,5)-A-[APT]-[AGS] C 3: 13.7666 17( 15) D-x(3,4)-A-x(0,1)-G-x(3)-[GILP] D 4: 13.6318 19( 15) D-x(2,3)-L-x(0,2)-D-x(4)-[IPV] E 5: 13.2131 19( 15) L-x(0,1)-D-x(0,2)-P-x(3)-[ALPV] F 6: 12.6674 22( 15) L-x(0,2)-D-x(2,3)-A-x-[ACDGSV] G 7: 12.5102 15( 15) A-H-x-D H 8: 11.5102 26( 15) G-x-P-x(1,3)-G I 9: 11.5102 19( 15) D-x(2,3)-P-x(3,4)-P J 10: 11.5102 18( 15) D-x(1,2)-D-x(2,3)-P K 11: 11.5102 21( 15) G-x(2,3)-V-x(1,2)-D L 12: 11.0102 28( 15) G-x(3,4)-V-x(1,3)-L M 13: 11.0102 28( 15) E-x(1,3)-L-x(2,3)-G N 14: 11.0102 29( 15) L-x(1,3)-E-x(1,2)-L O 15: 11.0102 33( 15) A-x(1,3)-L-x(3,4)-L P 16: 11.0102 31( 15) G-x(1,3)-S-x(1,2)-A Q 17: 11.0102 24( 15) G-x(1,3)-P-x(2,3)-L R 18: 11.0102 30( 15) L-x(0,2)-D-x(3,4)-D S 19: 11.0102 19( 15) G-x(1,2)-A-x(0,2)-V T 20: 11.0102 21( 15) V-x(1,3)-D-x(2,3)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 16.6802 15( 15) D-A-H-x-D Occurences: 15(15) ARGI_AGRT5 : 142- 146: fvlwl DAHtD lhtlh ARGI_ARATH : 185- 189: dilhl DAHpD iydcf ARGI_BACSU : 120- 124: gviwy DAHgD lntle ARGI_COCIM : 141- 145: aviwv DAHaD inrpe ARGI_HUMAN : 124- 128: gviwv DAHtD intpl ARGI_NEUCR : 141- 145: aviwv DAHaD intpe ARGI_RAT : 124- 128: cviwv DAHtD intpl ARGI_SCHPO : 142- 146: cvlwi DAHaD intpd ARGI_XENLA : 124- 128: cvvwv DAHaD intps ARGI_YEAST : 146- 150: gllwi DAHaD intie HUTG_BACSU : 150- 154: aviqf DAHhD vrnte HUTG_KLEAE : 59- 63: giinl DAHlD lrfad SPEB_ECOLI : 149- 153: alvhf DAHtD tyang SPEB_STRCL : 144- 148: avvhl DAHsD tnpaf YHMF_METFE : 131- 135: tilhf DAHmD manty B 2: 16.2285 16( 15) D-x(1,2)-D-x(3,5)-A-[APT]-[AGS] Occurences: 16(15) ARGI_AGRT5 : 246- 255: vsldv DflDpai--APA vgttv ARGI_ARATH : 272- 281: isidv DclDpaf--APG vshie ARGI_BACSU : 225- 234: lsldl DglDpnd--APG vgtpv ARGI_COCIM : 249- 258: lsfdv DalDpqw--APS tgtpv ARGI_HUMAN : 234- 245: lsfdv DglDpsftpATG tpvvg ARGI_NEUCR : 249- 258: lsfdv DalDpmw--APS tgtpv ARGI_RAT : 234- 245: lsfdv DglDpvftpATG tpvvg ARGI_SCHPO : 249- 258: lsfdv DacDpiv--APA tgtrv ARGI_SCHPO : 249- 260: lsfdv DacDpivapATG trvpg ARGI_XENLA : 234- 243: lsfdi DglDpsi--APA tgtpc ARGI_XENLA : 234- 245: lsfdi DglDpsiapATG tpcpg ARGI_YEAST : 258- 269: csydv DgvDplyipATG tpvrg HUTG_BACSU : 244- 253: isvdm DvlDqsh--APG cpaig HUTG_BACSU : 293- 303: vdptl DfrDmtsr-AAA hvllh HUTG_KLEAE : 201- 211: fnplf Di-DgqgarAAA rvawq SPEB_ECOLI : 232- 241: ltfdi DclDpaf--APG tgtpv SPEB_STRCL : 237- 246: vsvdi DvvDpaf--APG tgtpa YHMF_METFE : 216- 225: vtvdi DvlDpgy--APG vgnpt C 3: 13.7666 17( 15) D-x(3,4)-A-x(0,1)-G-x(3)-[GILP] Occurences: 17(15) ARGI_AGRT5 : 114- 124: vflgg DhsmsA-GtvsG vaqrt ARGI_ARATH : 275- 285: dvdcl Dpaf-ApGvshI epggl ARGI_BACSU : 96- 106: lvlgg Dhsi-AiGtlaG takhy ARGI_BACSU : 228- 238: dldgl Dpnd-ApGvgtP vvggi ARGI_COCIM : 112- 122: ltlgg Dhsi-AiGtisG takai ARGI_HUMAN : 100- 110: lvlgg Dhsl-AiGsisG harvh ARGI_NEUCR : 15- 26: lsqpr DlgivAvGfsgG qckpg ARGI_NEUCR : 112- 122: ltlgg Dhsi-AiGtiaG sakai ARGI_RAT : 100- 110: vvlgg Dhsm-AiGsisG harvh ARGI_SCHPO : 118- 128: vnigg Dhsl-AiGtveG vqavy ARGI_XENLA : 100- 110: qsigg Dhsl-AvGtiaG haavh ARGI_YEAST : 135- 145: vsavl DkypdA-GllwI dahad HUTG_BACSU : 247- 257: dmdvl Dqsh-ApGcpaI gpggl HUTG_KLEAE : 19- 28: reava Dcqr-A-GkrtL vlggg SPEB_ECOLI : 235- 245: didcl Dpaf-ApGtgtP viggl SPEB_STRCL : 240- 250: didvv Dpaf-ApGtgtP apggl YHMF_METFE : 219- 229: didvl Dpgy-ApGvgnP tpvgi D 4: 13.6318 19( 15) D-x(2,3)-L-x(0,2)-D-x(4)-[IPV] Occurences: 19(15) ARGI_AGRT5 : 212- 222: gvqva DmrvL--DeqgvV rplea ARGI_AGRT5 : 244- 254: lhvsl DvdfL--DpaiaP avgtt ARGI_ARATH : 110- 121: gkelk DprvLt-DvgdvP vqeir ARGI_ARATH : 180- 190: lggpv DilhL--DahpdI ydcfe ARGI_ARATH : 270- 280: vyisi DvdcL--DpafaP gvshi ARGI_BACSU : 223- 233: vhlsl DldgL--DpndaP gvgtp ARGI_COCIM : 247- 257: ihlsf DvdaL--DpqwaP stgtp ARGI_HUMAN : 232- 242: ihlsf DvdgL--DpsftP atgtp ARGI_NEUCR : 247- 257: ihlsf DvdaL--DpmwaP stgtp ARGI_RAT : 232- 242: ihlsf DvdgL--DpvftP atgtp ARGI_SCHPO : 135- 147: qavyd DacvLwiDahadI ntpds ARGI_XENLA : 49- 59: gndvr DcgdL--DfpdvP ndtpf ARGI_XENLA : 232- 242: ihlsf DidgL--DpsiaP atgtp ARGI_YEAST : 139- 151: ldkyp DaglLwiDahadI nties HUTG_BACSU : 242- 252: ifisv DmdvL--DqshaP gcpai HUTG_KLEAE : 143- 155: niaqf DrlyLtiDldvlP aremp SPEB_ECOLI : 230- 240: vyltf DidcL--DpafaP gtgtp SPEB_STRCL : 169- 179: frhgi Dek-Li-DpaamV qigir YHMF_METFE : 214- 224: fyvtv DidvL--DpgyaP gvgnp E 5: 13.2131 19( 15) L-x(0,1)-D-x(0,2)-P-x(3)-[ALPV] Occurences: 19(15) ARGI_AGRT5 : 63- 72: wavtd LgDatPtveP elshp ARGI_AGRT5 : 248- 254: ldvdf L-D--PaiaP avgtt ARGI_ARATH : 274- 280: idvdc L-D--PafaP gvshi ARGI_BACSU : 227- 233: ldldg L-D--PndaP gvgtp ARGI_COCIM : 251- 257: fdvda L-D--PqwaP stgtp ARGI_HUMAN : 236- 242: fdvdg L-D--PsftP atgtp ARGI_NEUCR : 251- 257: fdvda L-D--PmwaP stgtp ARGI_RAT : 236- 242: fdvdg L-D--PvftP atgtp ARGI_SCHPO : 194- 203: lafig LrDldPmerA flrer ARGI_SCHPO : 197- 203: iglrd L-D--PmerA flrer ARGI_XENLA : 236- 242: fdidg L-D--PsiaP atgtp ARGI_YEAST : 134- 142: tvsav L-DkyPdagL lwida HUTG_BACSU : 112- 120: tmhal LsDh-PdwvP lilgg HUTG_KLEAE : 45- 53: hgagv L-DafPgekV giinl SPEB_ECOLI : 175- 182: apkeg LiD--PnhsV qigir SPEB_ECOLI : 234- 240: fdidc L-D--PafaP gtgtp SPEB_STRCL : 172- 179: gidek LiD--PaamV qigir YHMF_METFE : 65- 72: hyrkk L-Dv-PiidL gdiev YHMF_METFE : 218- 224: vdidv L-D--PgyaP gvgnp F 6: 12.6674 22( 15) L-x(0,2)-D-x(2,3)-A-x-[ACDGSV] Occurences: 22(15) ARGI_AGRT5 : 248- 255: ldvdf L--DpaiApA vgttv ARGI_ARATH : 274- 281: idvdc L--DpafApG vshie ARGI_ARATH : 302- 311: nilhn LqaDvvgAdV vefnp ARGI_BACSU : 93- 102: kfplv LggDhsiAiG tlagt ARGI_BACSU : 209- 216: vieet L--DylsAcD gvhls ARGI_BACSU : 227- 234: ldldg L--DpndApG vgtpv ARGI_COCIM : 109- 118: rlvlt LggDhsiAiG tisgt ARGI_COCIM : 244- 252: dtpih LsfDvd-AlD pqwap ARGI_COCIM : 251- 258: fdvda L--DpqwApS tgtpv ARGI_HUMAN : 97- 106: rislv LggDhslAiG sisgh ARGI_NEUCR : 109- 118: rlvlt LggDhsiAiG tiags ARGI_NEUCR : 244- 252: dtpih LsfDvd-AlD pmwap ARGI_NEUCR : 251- 258: fdvda L--DpmwApS tgtpv ARGI_RAT : 97- 106: tisvv LggDhsmAiG sisgh ARGI_SCHPO : 244- 252: rrpih LsfDvd-AcD pivap ARGI_XENLA : 236- 243: fdidg L--DpsiApA tgtpc ARGI_YEAST : 119- 128: rfplt LggDhsiAiG tvsav HUTG_BACSU : 246- 253: vdmdv L--DqshApG cpaig HUTG_KLEAE : 62- 69: nldah L--DlrfAdC assgt SPEB_ECOLI : 234- 241: fdidc L--DpafApG tgtpv SPEB_STRCL : 172- 179: gidek Li-Dpa-AmV qigir YHMF_METFE : 218- 225: vdidv L--DpgyApG vgnpt G 7: 12.5102 15( 15) A-H-x-D Occurences: 15(15) ARGI_AGRT5 : 143- 146: vlwld AHtD lhtlh ARGI_ARATH : 186- 189: ilhld AHpD iydcf ARGI_BACSU : 121- 124: viwyd AHgD lntle ARGI_COCIM : 142- 145: viwvd AHaD inrpe ARGI_HUMAN : 125- 128: viwvd AHtD intpl ARGI_NEUCR : 142- 145: viwvd AHaD intpe ARGI_RAT : 125- 128: viwvd AHtD intpl ARGI_SCHPO : 143- 146: vlwid AHaD intpd ARGI_XENLA : 125- 128: vvwvd AHaD intps ARGI_YEAST : 147- 150: llwid AHaD intie HUTG_BACSU : 151- 154: viqfd AHhD vrnte HUTG_KLEAE : 60- 63: iinld AHlD lrfad SPEB_ECOLI : 150- 153: lvhfd AHtD tyang SPEB_STRCL : 145- 148: vvhld AHsD tnpaf YHMF_METFE : 132- 135: ilhfd AHmD manty H 8: 11.5102 26( 15) G-x-P-x(1,3)-G Occurences: 26(15) ARGI_AGRT5 : 25- 31: tcqil GaPvqsG asqpg ARGI_ARATH : 69- 73: stsll GvPl--G hnssf ARGI_BACSU : 9- 15: tisvi GmPmdlG qarrg ARGI_BACSU : 236- 241: dapgv GtPvv-G gisyr ARGI_BACSU : 236- 242: dapgv GtPvvgG isyre ARGI_COCIM : 28- 33: vgfsd GqPnq-G vdpsg ARGI_COCIM : 260- 265: wapst GtPvr-G gltlr ARGI_COCIM : 260- 266: wapst GtPvrgG ltlre ARGI_HUMAN : 12- 18: tigii GaPfskG qprgg ARGI_HUMAN : 18- 22: apfsk GqPr--G gveeg ARGI_HUMAN : 18- 23: apfsk GqPrg-G veegp ARGI_HUMAN : 245- 250: ftpat GtPvv-G gltyr ARGI_HUMAN : 245- 251: ftpat GtPvvgG ltyre ARGI_NEUCR : 260- 265: wapst GtPvr-G gltlr ARGI_NEUCR : 260- 266: wapst GtPvrgG ltlre ARGI_RAT : 12- 18: pieii GaPfskG qprgg ARGI_RAT : 18- 22: apfsk GqPr--G gvekg ARGI_RAT : 18- 23: apfsk GqPrg-G vekgp ARGI_RAT : 245- 250: ftpat GtPvv-G glsyr ARGI_RAT : 245- 251: ftpat GtPvvgG lsyre ARGI_SCHPO : 34- 39: mpfsg GqPkd-G aelap ARGI_XENLA : 12- 18: svgvi GaPfskG qprrg ARGI_XENLA : 18- 23: apfsk GqPrr-G veegp ARGI_XENLA : 245- 250: iapat GtPcp-G grtyr ARGI_XENLA : 245- 251: iapat GtPcpgG rtyre ARGI_YEAST : 269- 274: yipat GtPvr-G gltlr ARGI_YEAST : 269- 275: yipat GtPvrgG ltlre HUTG_BACSU : 161- 166: rnted GgPtn-G tpfrr HUTG_BACSU : 253- 258: qshap GcPai-G pggly HUTG_KLEAE : 169- 173: apaal GvPl--G tllri SPEB_ECOLI : 243- 248: fapgt GtPvi-G gltsd SPEB_ECOLI : 243- 249: fapgt GtPvigG ltsdr SPEB_STRCL : 36- 41: dvvvi GaPyd-G gtsyr SPEB_STRCL : 36- 42: dvvvi GaPydgG tsyrp SPEB_STRCL : 161- 167: gryhh GtPfrhG idekl SPEB_STRCL : 248- 253: fapgt GtPap-G gllsr SPEB_STRCL : 248- 254: fapgt GtPapgG llsre YHMF_METFE : 227- 233: yapgv GnPtpvG itpyh I 9: 11.5102 19( 15) D-x(2,3)-P-x(3,4)-P Occurences: 19(15) ARGI_AGRT5 : 65- 72: vtdlg Dat-Ptve-P elshp ARGI_AGRT5 : 246- 254: vsldv DfldPaia-P avgtt ARGI_ARATH : 272- 280: isidv DcldPafa-P gvshi ARGI_BACSU : 225- 233: lsldl DgldPnda-P gvgtp ARGI_COCIM : 249- 257: lsfdv DaldPqwa-P stgtp ARGI_HUMAN : 234- 242: lsfdv DgldPsft-P atgtp ARGI_NEUCR : 67- 74: vhlyt Dlv-Pked-P phrnm ARGI_NEUCR : 67- 75: vhlyt Dlv-PkedpP hrnmk ARGI_NEUCR : 249- 257: lsfdv DaldPmwa-P stgtp ARGI_RAT : 234- 242: lsfdv DgldPvft-P atgtp ARGI_SCHPO : 146- 154: idaha DintPdss-P sknlh ARGI_SCHPO : 249- 257: lsfdv DacdPiva-P atgtr ARGI_XENLA : 128- 136: vdaha DintPsts-P cgnlh ARGI_XENLA : 234- 242: lsfdi DgldPsia-P atgtp ARGI_YEAST : 258- 266: csydv DgvdPlyi-P atgtp HUTG_BACSU : 160- 168: vrnte Dgg-PtngtP frrll HUTG_KLEAE : 152- 160: ltidl Dvl-ParemP avsap SPEB_ECOLI : 232- 240: ltfdi DcldPafa-P gtgtp SPEB_STRCL : 237- 245: vsvdi DvvdPafa-P gtgtp YHMF_METFE : 216- 224: vtvdi DvldPgya-P gvgnp J 10: 11.5102 18( 15) D-x(1,2)-D-x(2,3)-P Occurences: 18(15) ARGI_AGRT5 : 62- 68: gwavt DlgDat-P tvepe ARGI_AGRT5 : 244- 250: lhvsl Dv-DfldP aiapa ARGI_ARATH : 270- 276: vyisi Dv-DcldP afapg ARGI_BACSU : 223- 229: vhlsl Dl-DgldP ndapg ARGI_COCIM : 247- 253: ihlsf Dv-DaldP qwaps ARGI_HUMAN : 232- 238: ihlsf Dv-DgldP sftpa ARGI_NEUCR : 247- 253: ihlsf Dv-DaldP mwaps ARGI_RAT : 232- 238: ihlsf Dv-DgldP vftpa ARGI_SCHPO : 247- 253: ihlsf Dv-DacdP ivapa ARGI_XENLA : 49- 56: gndvr DcgDldfP dvpnd ARGI_XENLA : 232- 238: ihlsf Di-DgldP siapa ARGI_YEAST : 256- 262: imcsy Dv-DgvdP lyipa HUTG_BACSU : 30- 37: liatw DgqDikgP aligv HUTG_BACSU : 114- 120: halls DhpDwv-P lilgg HUTG_KLEAE : 150- 155: lylti Dl-Dvl-P aremp SPEB_ECOLI : 230- 236: vyltf Di-DcldP afapg SPEB_STRCL : 235- 241: vyvsv Di-DvvdP afapg YHMF_METFE : 214- 220: fyvtv Di-DvldP gyapg K 11: 11.5102 21( 15) G-x(2,3)-V-x(1,2)-D Occurences: 21(15) ARGI_AGRT5 : 57- 62: vltel Gwa-Vt-D lgdat ARGI_AGRT5 : 207- 212: rvaei Gvq-Va-D mrvld ARGI_AGRT5 : 237- 244: vskvs GrlhVslD vdfld ARGI_AGRT5 : 313- 318: asslf Grr-Vf-D rvtta ARGI_ARATH : 32- 38: ssiek GqnrVi-D asltl ARGI_BACSU : 41- 46: rlsdm Gyt-Ve-D lgdip ARGI_COCIM : 283- 289: sihet Gsl-VamD lvevn ARGI_HUMAN : 110- 117: igsis GharVhpD lgviw ARGI_NEUCR : 283- 289: cvhet Gsl-VavD lvevn ARGI_RAT : 110- 117: igsis GharVhpD lcviw ARGI_SCHPO : 128- 134: igtve GvqaVy-D dacvl ARGI_SCHPO : 128- 135: igtve GvqaVydD acvlw ARGI_SCHPO : 283- 289: svaet Gsl-VavD vmevn ARGI_XENLA : 44- 49: klref Gnd-Vr-D cgdld ARGI_YEAST : 78- 85: kdstt GgssVmiD gvkak ARGI_YEAST : 79- 85: dsttg Gss-VmiD gvkak HUTG_BACSU : 282- 289: qpnva GieiVevD ptldf HUTG_KLEAE : 41- 46: tafgh Gag-Vl-D afpge SPEB_ECOLI : 195- 200: fdkdn Gft-Vl-D acqvn SPEB_STRCL : 200- 207: yargh GvrvVtaD efgel YHMF_METFE : 24- 31: nkkvf GllgVpfD ststy YHMF_METFE : 207- 214: inkld GpfyVtvD idvld L 12: 11.0102 28( 15) G-x(3,4)-V-x(1,3)-L Occurences: 28(15) ARGI_AGRT5 : 48- 56: afrta Gltq-VlteL gwavt ARGI_AGRT5 : 133- 141: rtael GkeqfVlw-L dahtd ARGI_AGRT5 : 237- 243: vskvs Grlh-Vs--L dvdfl ARGI_ARATH : 323- 332: rdtvd GmtamVaakL vrela ARGI_BACSU : 138- 145: sgnih GmplaVs--L gighe ARGI_BACSU : 148- 155: vslgi GheslVn--L egyap ARGI_BACSU : 280- 286: hknkt Gkta-Ve--L vesll ARGI_COCIM : 224- 233: didky GigrvVemaL ahigq ARGI_COCIM : 309- 317: etira Gcsl-VrsaL gdtll ARGI_HUMAN : 110- 118: igsis Ghar-VhpdL gviwv ARGI_HUMAN : 245- 252: ftpat Gtpv-Vgg-L tyreg ARGI_NEUCR : 58- 64: gyrlh Gdde-Vh--L ytdlv ARGI_NEUCR : 283- 290: cvhet GslvaVd--L vevnp ARGI_RAT : 91- 97: etqkn Gtis-Vv--L ggdhs ARGI_RAT : 110- 118: igsis Ghar-VhpdL cviwv ARGI_RAT : 245- 252: ftpat Gtpv-Vgg-L syreg ARGI_SCHPO : 222- 231: dvdky GiarvVemaL ehinp ARGI_XENLA : 110- 118: vgtia Ghaa-VhpnL cvvwv ARGI_XENLA : 161- 169: mpavp Gfew-VkpcL rskdi ARGI_YEAST : 281- 288: ltlre Glfl-Ver-L aesgn HUTG_BACSU : 76- 83: ysael Gehv-Vse-L lydlg HUTG_BACSU : 76- 84: ysael Gehv-VselL ydlgd HUTG_KLEAE : 186- 193: plcrs GklqaVd--L vefnp SPEB_ECOLI : 123- 130: rmlsf GgdhfVt--L pllra SPEB_ECOLI : 123- 132: rmlsf GgdhfVtlpL lraha SPEB_ECOLI : 124- 130: mlsfg Gdhf-Vt--L pllra SPEB_ECOLI : 124- 132: mlsfg Gdhf-VtlpL lraha SPEB_ECOLI : 221- 227: vkqiv Gdmp-Vy--L tfdid SPEB_ECOLI : 241- 250: pafap GtgtpViggL tsdra SPEB_STRCL : 136- 143: vaeqh GplavVh--L dahsd SPEB_STRCL : 136- 143: vaeqh Gpla-Vvh-L dahsd YHMF_METFE : 73- 79: piidl Gdie-Vi--L gdfkn M 13: 11.0102 28( 15) E-x(1,3)-L-x(2,3)-G Occurences: 28(15) ARGI_AGRT5 : 274- 280: ahlim Em--LhdsG lvtsl ARGI_ARATH : 53- 60: aklkg ElvrLlg-G akast ARGI_ARATH : 254- 259: drpml En--Lkl-G egvkg ARGI_ARATH : 254- 261: drpml EnlkLge-G vkgvy ARGI_BACSU : 35- 41: yahli Er--LsdmG ytved ARGI_BACSU : 253- 259: shlam Em--LydaG iitsa ARGI_COCIM : 203- 211: dvdra EkrlLrehG ikafs ARGI_COCIM : 230- 237: igrvv Ema-LahiG qdtpi ARGI_HUMAN : 186- 194: dvdpg EhyiLktlG ikyfs ARGI_HUMAN : 202- 209: yfsmt EvdrLgi-G kvmee ARGI_NEUCR : 203- 211: dvdpg EkriLrenG ikafs ARGI_NEUCR : 230- 237: igrvm Ema-LghiG ndtpi ARGI_RAT : 202- 209: yfsmt EvdkLgi-G kvmee ARGI_SCHPO : 54- 60: aaglp Ed--LerlG ysvnv ARGI_SCHPO : 185- 193: trrvi EerrLafiG lrdld ARGI_SCHPO : 186- 193: rrvie Err-LafiG lrdld ARGI_XENLA : 38- 44: eagli Ek--LrefG ndvrd ARGI_XENLA : 186- 194: dvdpg EhyiLktlG ikyls ARGI_XENLA : 262- 268: grilh Eq--LhktG llsgv ARGI_YEAST : 208- 216: dvdag EkkiLkdlG iaafs ARGI_YEAST : 286- 292: glflv Er--LaesG nlial HUTG_BACSU : 82- 88: ehvvs El--LydlG didih HUTG_BACSU : 179- 187: deeii EgqhLiqlG irefs HUTG_KLEAE : 180- 186: llriv Ep--LcrsG klqav SPEB_ECOLI : 110- 116: lqaha Ekl-Laa-G krmls SPEB_ECOLI : 110- 116: lqaha Ek--LlaaG krmls SPEB_STRCL : 59- 65: qairs Esg-Lih-G vgidr SPEB_STRCL : 208- 215: vvtad EfgeLgv-G gtadl SPEB_STRCL : 208- 216: vvtad EfgeLgvgG tadli SPEB_STRCL : 279- 287: gfdvm EvspLydhG gitsi YHMF_METFE : 95- 100: sekvq Ev--Lkk-G mipiv N 14: 11.0102 29( 15) L-x(1,3)-E-x(1,2)-L Occurences: 29(15) ARGI_AGRT5 : 271- 276: freah Lim-Em-L hdsgl ARGI_ARATH : 145- 152: sesvk LvmeEepL rplvl ARGI_BACSU : 33- 37: iryah Li--Er-L sdmgy ARGI_BACSU : 70- 76: nlnsv LagnEk-L aqkvn ARGI_BACSU : 250- 255: yresh Lam-Em-L ydagi ARGI_BACSU : 286- 290: ktave Lv--Es-L lgkkl ARGI_BACSU : 286- 291: ktave Lv--EslL gkkll ARGI_COCIM : 39- 44: vdpsg Li--EagL ldqlr ARGI_HUMAN : 36- 40: lrkag Ll--Ek-L keqec ARGI_HUMAN : 252- 258: pvvgg LtyrEg-L yitee ARGI_NEUCR : 39- 44: aapsa Li--EsgL ltqlr ARGI_NEUCR : 48- 52: glltq Lr--Ee-L gyrlh ARGI_RAT : 36- 40: lrkag Lv--Ek-L ketey ARGI_RAT : 252- 258: pvvgg LsyrEg-L yitee ARGI_SCHPO : 52- 56: ieaag Lp--Ed-L erlgy ARGI_SCHPO : 167- 173: plsfs LgyaEp-L peefa ARGI_XENLA : 31- 36: egpky Lr--EagL ieklr ARGI_XENLA : 36- 40: lreag Li--Ek-L refgn ARGI_XENLA : 260- 264: regri Lh--Eq-L hktgl ARGI_YEAST : 276- 282: pvrgg LtlrEg-L flver ARGI_YEAST : 278- 282: rgglt Lr--Eg-L flver ARGI_YEAST : 282- 288: tlreg LflvEr-L aesgn ARGI_YEAST : 284- 288: reglf Lv--Er-L aesgn ARGI_YEAST : 328- 332: iarca Lg--Et-L l ARGI_YEAST : 328- 333: iarca Lg--EtlL HUTG_BACSU : 262- 268: igpgg LytdEl-L eavky HUTG_KLEAE : 176- 182: plgtl LrivEp-L crsgk SPEB_ECOLI : 292- 297: laaat Lal-Em-L yiqaa SPEB_STRCL : 255- 261: papgg LlsrEv-L allrc SPEB_STRCL : 256- 261: apggl Lsr-Ev-L allrc YHMF_METFE : 72- 79: vpiid LgdiEviL gdfkn O 15: 11.0102 33( 15) A-x(1,3)-L-x(3,4)-L Occurences: 33(15) ARGI_AGRT5 : 47- 53: dafrt Ag--Ltqv-L telgw ARGI_AGRT5 : 269- 276: atfre Ah--LimemL hdsgl ARGI_AGRT5 : 288- 294: tsldl Ae--Lnpf-L dergr ARGI_AGRT5 : 301- 307: ergrt Ar--Litd-L asslf ARGI_ARATH : 48- 54: lirer Ak--Lkge-L vrllg ARGI_ARATH : 63- 72: lggak AstsLlgvpL ghnss ARGI_ARATH : 329- 336: mtamv Aak-Lvre-L aakis ARGI_ARATH : 330- 336: tamva Ak--Lvre-L aakis ARGI_BACSU : 31- 37: sairy Ah--Lier-L sdmgy ARGI_BACSU : 283- 290: ktgkt Ave-Lves-L lgkkl ARGI_BACSU : 283- 291: ktgkt Ave-LveslL gkkll ARGI_COCIM : 42- 48: sglie Ag--Lldq-L rddle ARGI_COCIM : 308- 317: setir AgcsLvrsaL gdtll ARGI_HUMAN : 34- 40: tvlrk Ag--Llek-L keqec ARGI_HUMAN : 298- 306: vntav Ait-LacfgL aregn ARGI_NEUCR : 35- 44: pgvda ApsaLiesgL ltqlr ARGI_RAT : 29- 36: vekgp Aa--LrkagL veklk ARGI_RAT : 34- 40: aalrk Ag--Lvek-L ketey ARGI_RAT : 146- 152: hgqpv Af--Llke-L kgkfp ARGI_SCHPO : 49- 56: pemie Aag-Lped-L erlgy ARGI_SCHPO : 50- 56: emiea Ag--Lped-L erlgy ARGI_XENLA : 34- 40: kylre Ag--Liek-L refgn ARGI_YEAST : 324- 332: agcai ArcaLget-L l ARGI_YEAST : 324- 333: agcai ArcaLgetlL HUTG_BACSU : 302- 310: mtsra AahvLlha-L kgmkl HUTG_BACSU : 303- 310: tsraa Ahv-Llha-L kgmkl HUTG_KLEAE : 164- 172: mpavs ApaaLgvp-L gtllr HUTG_KLEAE : 166- 172: avsap Aa--Lgvp-L gtllr SPEB_ECOLI : 255- 262: ltsdr Aik-Lvrg-L kdlni SPEB_ECOLI : 288- 297: eital AaatLalemL yiqaa SPEB_ECOLI : 289- 297: itala Aat-LalemL yiqaa SPEB_ECOLI : 290- 297: talaa At--LalemL yiqaa SPEB_STRCL : 100- 108: iaidt AqshLsgl-L kanaa YHMF_METFE : 272- 280: paamn AakiLydf-L faiki YHMF_METFE : 273- 280: aamna Aki-Lydf-L faiki P 16: 11.0102 31( 15) G-x(1,3)-S-x(1,2)-A Occurences: 31(15) ARGI_AGRT5 : 112- 119: lpvfl GgdhSmsA gtvsg ARGI_AGRT5 : 113- 119: pvflg Gdh-SmsA gtvsg ARGI_AGRT5 : 120- 126: hsmsa Gtv-SgvA qrtae ARGI_ARATH : 196- 202: ydcfe GnkySh-A ssfar ARGI_BACSU : 94- 100: fplvl GgdhSi-A igtla ARGI_BACSU : 95- 100: plvlg Gdh-Si-A igtla ARGI_COCIM : 110- 116: lvltl GgdhSi-A igtis ARGI_COCIM : 111- 116: vltlg Gdh-Si-A igtis ARGI_COCIM : 118- 124: hsiai Gti-SgtA kaire ARGI_HUMAN : 98- 104: islvl GgdhSl-A igsis ARGI_HUMAN : 99- 104: slvlg Gdh-Sl-A igsis ARGI_HUMAN : 106- 112: hslai Gsi-SghA rvhpd ARGI_NEUCR : 110- 116: lvltl GgdhSi-A igtia ARGI_NEUCR : 111- 116: vltlg Gdh-Si-A igtia ARGI_RAT : 98- 104: isvvl GgdhSm-A igsis ARGI_RAT : 99- 104: svvlg Gdh-Sm-A igsis ARGI_RAT : 106- 112: hsmai Gsi-SghA rvhpd ARGI_SCHPO : 116- 122: iavni GgdhSl-A igtve ARGI_SCHPO : 117- 122: avnig Gdh-Sl-A igtve ARGI_XENLA : 98- 104: tcqsi GgdhSl-A vgtia ARGI_XENLA : 99- 104: cqsig Gdh-Sl-A vgtia ARGI_XENLA : 235- 241: sfdid GldpSi-A patgt ARGI_YEAST : 120- 126: fpltl GgdhSi-A igtvs ARGI_YEAST : 121- 126: pltlg Gdh-Si-A igtvs HUTG_BACSU : 53- 57: sishs Ga--Sf-A pgtir HUTG_KLEAE : 96- 100: hytci Gv--Sr-A antqa HUTG_KLEAE : 96- 101: hytci Gv--SraA ntqal SPEB_ECOLI : 248- 255: gtpvi GgltSdrA iklvr SPEB_ECOLI : 249- 255: tpvig Glt-SdrA iklvr SPEB_STRCL : 287- 294: plydh GgitSilA teiga SPEB_STRCL : 288- 294: lydhg Git-SilA teiga YHMF_METFE : 142- 148: antya GkkfSh-A tvmrr Q 17: 11.0102 24( 15) G-x(1,3)-P-x(2,3)-L Occurences: 24(15) ARGI_AGRT5 : 31- 38: apvqs GasqPgc-L mgpda ARGI_ARATH : 176- 182: vsekl Gg--PvdiL hldah ARGI_BACSU : 9- 14: tisvi Gm--Pmd-L gqarr ARGI_COCIM : 33- 39: gqpnq Gvd-Psg-L ieagl ARGI_COCIM : 159- 165: sgnih Gm--PlafL tglak ARGI_COCIM : 178- 185: nedmf GwlqPdn-L isprk ARGI_COCIM : 237- 244: alahi GqdtPih-L sfdvd ARGI_HUMAN : 142- 148: sgnlh Gq--PvsfL lkelk ARGI_HUMAN : 310- 318: glare GnhkPidyL nppk ARGI_NEUCR : 159- 165: sgnih Gm--PvsfL tglas ARGI_NEUCR : 178- 185: keeff GwlkPdh-L lsvkk ARGI_NEUCR : 178- 186: keeff GwlkPdhlL svkkl ARGI_NEUCR : 237- 244: alghi GndtPih-L sfdvd ARGI_RAT : 142- 148: sgnlh Gq--PvafL lkelk ARGI_SCHPO : 51- 56: mieaa Gl--Ped-L erlgy ARGI_SCHPO : 237- 244: ehinp GrrrPih-L sfdvd ARGI_SCHPO : 260- 267: vapat GtrvPgg-L tfrea ARGI_XENLA : 142- 148: cgnlh Gq--PlsfL mkelk ARGI_YEAST : 164- 170: sgnlh Gc--PvsfL mglnk HUTG_BACSU : 166- 172: ggptn Gt--PfrrL ldeei HUTG_KLEAE : 73- 79: dcass Gt--PfrqL alecd HUTG_KLEAE : 169- 175: apaal Gv--PlgtL lrive SPEB_ECOLI : 221- 227: vkqiv Gdm-Pvy-L tfdid SPEB_STRCL : 248- 255: fapgt GtpaPgg-L lsrev SPEB_STRCL : 248- 256: fapgt GtpaPgglL srevl YHMF_METFE : 100- 106: evlkk Gmi-Piv-L ggehs R 18: 11.0102 30( 15) L-x(0,2)-D-x(3,4)-D Occurences: 30(15) ARGI_AGRT5 : 139- 146: keqfv LwlDaht-D lhtlh ARGI_AGRT5 : 141- 146: qfvlw L--Daht-D lhtlh ARGI_AGRT5 : 243- 249: rlhvs L--DvdflD paiap ARGI_ARATH : 182- 189: gpvdi LhlDahp-D iydcf ARGI_ARATH : 184- 189: vdilh L--Dahp-D iydcf ARGI_ARATH : 302- 310: nilhn LqaDvvgaD vvefn ARGI_BACSU : 220- 228: cdgvh LslDldglD pndap ARGI_BACSU : 222- 228: gvhls L--DldglD pndap ARGI_COCIM : 44- 50: lieag Ll-Dqlr-D dleyd ARGI_COCIM : 44- 51: lieag Ll-DqlrdD leydi ARGI_COCIM : 45- 50: ieagl L--Dqlr-D dleyd ARGI_COCIM : 45- 51: ieagl L--DqlrdD leydi ARGI_COCIM : 48- 55: glldq LrdDley-D irhdg ARGI_COCIM : 48- 55: glldq Lr-DdleyD irhdg ARGI_COCIM : 52- 59: qlrdd LeyDirh-D gqvht ARGI_COCIM : 168- 175: afltg LakDdne-D mfgwl ARGI_COCIM : 244- 252: dtpih LsfDvdalD pqwap ARGI_HUMAN : 229- 237: krpih LsfDvdglD psftp ARGI_NEUCR : 244- 252: dtpih LsfDvdalD pmwap ARGI_RAT : 229- 237: krpih LsfDvdglD pvftp ARGI_SCHPO : 139- 146: ddacv LwiDaha-D intpd ARGI_SCHPO : 244- 252: rrpih LsfDvdacD pivap ARGI_XENLA : 229- 237: krpih LsfDidglD psiap ARGI_YEAST : 134- 139: tvsav L--Dkyp-D agllw ARGI_YEAST : 143- 150: pdagl LwiDaha-D intie HUTG_BACSU : 83- 91: hvvse LlyDlgdiD ihvtd HUTG_BACSU : 84- 91: vvsel Ly-DlgdiD ihvtd HUTG_KLEAE : 58- 63: vgiin L--Dahl-D lrfad HUTG_KLEAE : 62- 68: nldah L--DlrfaD cassg SPEB_ECOLI : 227- 235: dmpvy LtfDidclD pafap SPEB_STRCL : 143- 148: lavvh L--Dahs-D tnpaf YHMF_METFE : 65- 71: hyrkk L--DvpiiD lgdie YHMF_METFE : 128- 135: sdvti LhfDahm-D manty S 19: 11.0102 19( 15) G-x(1,2)-A-x(0,2)-V Occurences: 19(15) ARGI_AGRT5 : 57- 60: vltel Gw-A--V tdlgd ARGI_ARATH : 323- 328: rdtvd GmtAm-V aaklv ARGI_BACSU : 280- 284: hknkt GktA--V elves ARGI_COCIM : 19- 23: kghql GvvA--V gfsdg ARGI_HUMAN : 82- 87: seqla GkvAq-V kkngr ARGI_HUMAN : 110- 114: igsis Gh-Ar-V hpdlg ARGI_NEUCR : 17- 21: qprdl GivA--V gfsgg ARGI_RAT : 51- 56: nvrdh GdlAf-V dvpnd ARGI_RAT : 110- 114: igsis Gh-Ar-V hpdlc ARGI_SCHPO : 21- 24: sryme Gn-A--V siinm ARGI_SCHPO : 128- 132: igtve GvqA--V yddac ARGI_SCHPO : 222- 226: dvdky Gi-Ar-V vemal ARGI_SCHPO : 222- 227: dvdky Gi-ArvV emale ARGI_XENLA : 110- 114: vgtia GhaA--V hpnlc ARGI_XENLA : 110- 114: vgtia Gh-Aa-V hpnlc ARGI_YEAST : 229- 233: hvdky GinA--V iemam HUTG_BACSU : 142- 146: iaqtk GttA--V iqfda HUTG_KLEAE : 39- 44: hetaf GhgAg-V ldafp SPEB_ECOLI : 141- 146: hakhf GkmAl-V hfdah SPEB_STRCL : 136- 140: vaeqh GplA--V vhlda SPEB_STRCL : 136- 141: vaeqh GplAv-V hldah YHMF_METFE : 221- 226: dvldp Gy-ApgV gnptp T 20: 11.0102 21( 15) V-x(1,3)-D-x(2,3)-A Occurences: 21(15) ARGI_AGRT5 : 60- 66: elgwa Vt--DlgdA tptve ARGI_AGRT5 : 245- 253: hvsld VdflDpaiA pavgt ARGI_ARATH : 271- 279: yisid VdclDpafA pgvsh ARGI_BACSU : 92- 100: kkfpl VlggDhsiA igtla ARGI_COCIM : 137- 144: grema ViwvDah-A dinrp ARGI_COCIM : 248- 256: hlsfd VdalDpqwA pstgt ARGI_HUMAN : 96- 104: grisl VlggDhslA igsis ARGI_NEUCR : 137- 144: greia ViwvDah-A dintp ARGI_NEUCR : 248- 256: hlsfd VdalDpmwA pstgt ARGI_RAT : 96- 104: gtisv VlggDhsmA igsis ARGI_SCHPO : 138- 145: yddac VlwiDah-A dintp ARGI_SCHPO : 248- 256: hlsfd VdacDpivA patgt ARGI_XENLA : 120- 127: hpnlc VvwvDah-A dintp ARGI_XENLA : 121- 127: pnlcv Vwv-Dah-A dintp ARGI_YEAST : 82- 89: tggss Vmi-DgvkA kradl HUTG_BACSU : 245- 251: svdmd Vl--DqshA pgcpa HUTG_KLEAE : 17- 23: alrea Va--DcqrA gkrtl SPEB_ECOLI : 86- 94: erlnv VdcgDlvyA fgdar SPEB_ECOLI : 209- 214: vndrs Vd--Dvi-A qvkqi SPEB_STRCL : 238- 244: svdid Vv--DpafA pgtgt YHMF_METFE : 217- 223: tvdid Vl--DpgyA pgvgn Number of patterns evaluated by Pratt:2004 Total running time: 3 seconds