------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 3 sequences from file AP_NUCLEASE_F2_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 3 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename AP_NUCLEASE_F2_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: APN1_YEAST 366 END4_ECOLI 285 END_MYCLE 252 Pratt run started at Thu Feb 6 18:53:01 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 49.0406 3( 3) G-x(3)-L-x(1,3)-H-x-N-D-x-K-x(3)-G-x(3)-D-x-H-x(2)-L-G-x-G 2: 48.5406 3( 3) G-x(2,3)-L-x(1,3)-H-x-N-D-x-K-x(3)-G-x(3)-D-x-H-x(2)-L-G-x-G 3: 44.8706 3( 3) L-x(1,3)-H-x-N-D-x-K-x(3)-G-x(3)-D-x-H-x(2)-L-G-x-G 4: 44.3706 3( 3) L-x(1,3)-H-x(0,1)-N-D-x-K-x(3)-G-x(3)-D-x-H-x(2)-L-G-x-G 5: 40.7005 3( 3) E-x(3,5)-G-x-C-x-D-T-C-H-x(2)-A-A-G 6: 40.2005 3( 3) E-x(3,5)-G-x(0,1)-C-x-D-T-C-H-x(2)-A-A-G 7: 36.5305 3( 3) D-x-K-x(3)-G-x(1,2)-R-x(0,1)-D-x-H-x(2)-L-G-x-G 8: 36.5305 3( 3) N-x(2)-K-x(3)-G-x(1,2)-R-x(0,1)-D-x-H-x(2)-L-G-x-G 9: 36.5305 3( 3) H-x(4)-K-x(3)-G-x(1,2)-R-x(0,1)-D-x-H-x(2)-L-G-x-G 10: 33.3604 3( 3) G-x(3)-D-T-C-H-x(2)-A-A-G 11: 32.8604 3( 3) G-x(2,3)-D-T-C-H-x(2)-A-A-G 12: 32.3604 3( 3) K-x(3)-G-x(1,2)-R-x(0,1)-D-x-H-x(2)-L-G-x-G 13: 31.8604 3( 3) G-x-C-x-D-T-C-H-x(0,2)-A-x(0,1)-A 14: 31.3604 3( 3) E-x(3,5)-G-x-C-x-D-T-C-H-x(0,2)-A 15: 28.1904 3( 3) G-x(1,2)-R-x(0,1)-D-x-H-x(2)-L-G-x-G 16: 28.1904 3( 3) T-x(1,2)-V-x(4)-E-N-x-A-G-x(0,1)-G 17: 27.6904 3( 3) R-x(0,1)-D-x-H-x(2)-L-G-x-G-x(1,3)-I 18: 27.6904 4( 3) G-x(0,2)-R-x(0,1)-D-x-H-x(2)-L-G-x-G 19: 27.6904 3( 3) C-x-D-T-C-H-x(0,2)-A-x(0,1)-A 20: 27.1904 3( 3) D-x-H-x(2)-L-G-x-G-x(1,3)-I-x(0,2)-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 108.9877 3( 3) H-x-N-D-[AS]-K-[ADS]-[EPT]-x-G-x(1,2)-R-x(0,1)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL]-E-[ET]-[GIP] B 2: 107.9916 3( 3) N-D-[AS]-K-[ADS]-[EPT]-x-G-x(1,2)-R-x(0,1)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL]-E-[ET]-[GIP]-x(2)-[DN] C 3: 105.8098 3( 3) L-x(1,3)-H-x(0,1)-N-D-[AS]-K-[ADS]-[EPT]-x-G-[AS]-x(2)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL]-E D 4: 103.8216 3( 3) D-[AS]-K-[ADS]-[EPT]-x-G-x(1,2)-R-x(0,1)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL]-E-[ET]-[GIP]-x(2)-[DN] E 5: 102.6396 3( 3) G-x(2,3)-L-x(1,3)-H-x-N-D-[AS]-K-[ADS]-[EPT]-x-G-[AS]-x(2)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP] F 6: 102.1397 3( 3) L-x(1,3)-H-x-N-D-[AS]-K-[ADS]-[EPT]-x-G-[AS]-x(2)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL] G 7: 99.9392 3( 3) G-x(3)-L-x(1,3)-H-x-N-D-[AS]-K-[ADS]-[EPT]-x-G-[AS]-x(2)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I H 8: 99.6425 3( 3) K-[ADS]-[EPT]-x-G-x(1,2)-R-x(0,1)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL]-E-[ET]-[GIP]-x(2)-[DN]-x(2)-[AG] I 9: 93.4295 3( 3) G-x(1,2)-R-x(0,1)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL]-E-[ET]-[GIP]-x(2)-[DN]-x(2)-[AG]-x(3)-[ET] J 10: 92.9295 4( 3) G-x(0,2)-R-x(0,1)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL]-E-[ET]-[GIP]-x(2)-[DN]-x(2)-[AG]-x(3)-[ET] K 11: 73.8401 3( 3) D-x-H-x-[NRS]-L-G-[EQS]-G-x(1,3)-I-x(0,2)-D-[AV]-x(3)-[IV]-x(2)-[DSV]-[DEK]-x(2)-[DGQ]-[AG]-[IP]-[PV]-[IL]-x(2)-[ET]-[AT]-x(3)-[DNR]-x(2)-[ADG]-x-[AEG] L 12: 62.3264 3( 3) E-x(3,5)-G-x-C-[IL]-D-T-C-H-[AT]-[FW]-A-A-G-x-[DG]-[IL]-x(2)-[PTV]-x-[DET] M 13: 61.8264 3( 3) E-x(3,5)-G-x(0,1)-C-[IL]-D-T-C-H-[AT]-[FW]-A-A-G-x-[DG]-[IL]-x(2)-[PTV]-x-[DET] N 14: 57.9089 3( 3) E-x(3,5)-G-[FV]-C-[IL]-D-T-C-H-x(0,2)-A-A-G-x-[DG]-[IL]-x(2)-[PTV]-x-[DET] O 15: 54.7389 3( 3) G-[FV]-C-[IL]-D-T-C-H-x(0,2)-A-A-G-x-[DG]-[IL]-x(2)-[PTV]-x-[DET] P 16: 51.6997 3( 3) G-x(3)-D-T-C-H-[AT]-[FW]-A-A-G-x-[DG]-[IL]-x(2)-[PTV]-x-[DET] Q 17: 51.1997 3( 3) G-x(2,3)-D-T-C-H-[AT]-[FW]-A-A-G-x-[DG]-[IL]-x(2)-[PTV]-x-[DET] R 18: 47.3572 3( 3) C-[IL]-D-T-C-H-x(0,2)-A-A-G-x-[DG]-[IL]-x(2)-[PTV]-x-[DET] S 19: 39.3648 3( 3) T-x(1,2)-V-x-[AIV]-x-[IL]-E-N-x-A-G-x(0,1)-G-[DNS]-x-[ALV] T 20: 39.0712 3( 3) R-x(0,1)-D-x-H-x-[NRS]-L-G-[EQS]-G-x(1,3)-I-[DG]-x(3)-[FLM] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 108.9877 3( 3) H-x-N-D-[AS]-K-[ADS]-[EPT]-x-G-x(1,2)-R-x(0,1)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL]-E-[ET]-[GIP] Occurences: 3(3) APN1_YEAST : 228- 275: ylsav HlNDSKAPlGanR-DlHeRLGQGyLGiDVFrmIahSEylQGIPivLETP yende END4_ECOLI : 216- 263: ylrgm HlNDAKSTfGs-RvDrHhSLGEGnIGhDAFrwImqDDrfDGIPliLETI npdiw END_MYCLE : 191- 238: ridlv HcNDSKDEaGsgR-DrHaNLGSGqIDaELLvaAvkVAgaPVICetAEEG rkddi B 2: 107.9916 3( 3) N-D-[AS]-K-[ADS]-[EPT]-x-G-x(1,2)-R-x(0,1)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL]-E-[ET]-[GIP]-x(2)-[DN] Occurences: 3(3) APN1_YEAST : 230- 278: savhl NDSKAPlGanR-DlHeRLGQGyLGiDVFrmIahSEylQGIPivLETPyeN degyg END4_ECOLI : 218- 266: rgmhl NDAKSTfGs-RvDrHhSLGEGnIGhDAFrwImqDDrfDGIPliLETInpD iwaee END_MYCLE : 193- 241: dlvhc NDSKDEaGsgR-DrHaNLGSGqIDaELLvaAvkVAgaPVICetAEEGrkD diafl C 3: 105.8098 3( 3) L-x(1,3)-H-x(0,1)-N-D-[AS]-K-[ADS]-[EPT]-x-G-[AS]-x(2)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL]-E Occurences: 3(3) APN1_YEAST : 224- 273: igfky LsavHlNDSKAPlGAnrDlHeRLGQGyLGiDVFrmIahSEylQGIPivLE tpyen END4_ECOLI : 212- 261: vgfky LrgmHlNDAKSTfGSrvDrHhSLGEGnIGhDAFrwImqDDrfDGIPliLE tinpd END_MYCLE : 189- 236: tgrid Lv--HcNDSKDEaGSgrDrHaNLGSGqIDaELLvaAvkVAgaPVICetAE egrkd D 4: 103.8216 3( 3) D-[AS]-K-[ADS]-[EPT]-x-G-x(1,2)-R-x(0,1)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL]-E-[ET]-[GIP]-x(2)-[DN] Occurences: 3(3) APN1_YEAST : 231- 278: avhln DSKAPlGanR-DlHeRLGQGyLGiDVFrmIahSEylQGIPivLETPyeN degyg END4_ECOLI : 219- 266: gmhln DAKSTfGs-RvDrHhSLGEGnIGhDAFrwImqDDrfDGIPliLETInpD iwaee END_MYCLE : 194- 241: lvhcn DSKDEaGsgR-DrHaNLGSGqIDaELLvaAvkVAgaPVICetAEEGrkD diafl E 5: 102.6396 3( 3) G-x(2,3)-L-x(1,3)-H-x-N-D-[AS]-K-[ADS]-[EPT]-x-G-[AS]-x(2)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP] Occurences: 3(3) APN1_YEAST : 220- 269: fndvi GfkyLsavHlNDSKAPlGAnrDlHeRLGQGyLGiDVFrmIahSEylQGIP ivlet END4_ECOLI : 208- 257: fartv GfkyLrgmHlNDAKSTfGSrvDrHhSLGEGnIGhDAFrwImqDDrfDGIP lilet END_MYCLE : 185- 232: ikait GridLv--HcNDSKDEaGSgrDrHaNLGSGqIDaELLvaAvkVAgaPVIC etaee F 6: 102.1397 3( 3) L-x(1,3)-H-x-N-D-[AS]-K-[ADS]-[EPT]-x-G-[AS]-x(2)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL] Occurences: 3(3) APN1_YEAST : 224- 272: igfky LsavHlNDSKAPlGAnrDlHeRLGQGyLGiDVFrmIahSEylQGIPivL etpye END4_ECOLI : 212- 260: vgfky LrgmHlNDAKSTfGSrvDrHhSLGEGnIGhDAFrwImqDDrfDGIPliL etinp END_MYCLE : 189- 235: tgrid Lv--HcNDSKDEaGSgrDrHaNLGSGqIDaELLvaAvkVAgaPVICetA eegrk G 7: 99.9392 3( 3) G-x(3)-L-x(1,3)-H-x-N-D-[AS]-K-[ADS]-[EPT]-x-G-[AS]-x(2)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I Occurences: 3(3) APN1_YEAST : 220- 268: fndvi GfkyLsavHlNDSKAPlGAnrDlHeRLGQGyLGiDVFrmIahSEylQGI pivle END4_ECOLI : 208- 256: fartv GfkyLrgmHlNDAKSTfGSrvDrHhSLGEGnIGhDAFrwImqDDrfDGI plile END_MYCLE : 185- 231: ikait GridLv--HcNDSKDEaGSgrDrHaNLGSGqIDaELLvaAvkVAgaPVI cetae H 8: 99.6425 3( 3) K-[ADS]-[EPT]-x-G-x(1,2)-R-x(0,1)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL]-E-[ET]-[GIP]-x(2)-[DN]-x(2)-[AG] Occurences: 3(3) APN1_YEAST : 233- 281: hlnds KAPlGanR-DlHeRLGQGyLGiDVFrmIahSEylQGIPivLETPyeNdeG ygnei END4_ECOLI : 221- 269: hlnda KSTfGs-RvDrHhSLGEGnIGhDAFrwImqDDrfDGIPliLETInpDiwA eeitw END_MYCLE : 196- 244: hcnds KDEaGsgR-DrHaNLGSGqIDaELLvaAvkVAgaPVICetAEEGrkDdiA flrek I 9: 93.4295 3( 3) G-x(1,2)-R-x(0,1)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL]-E-[ET]-[GIP]-x(2)-[DN]-x(2)-[AG]-x(3)-[ET] Occurences: 3(3) APN1_YEAST : 237- 285: skapl GanR-DlHeRLGQGyLGiDVFrmIahSEylQGIPivLETPyeNdeGygnE iklme END4_ECOLI : 225- 273: akstf Gs-RvDrHhSLGEGnIGhDAFrwImqDDrfDGIPliLETInpDiwAeeiT wlkaq END_MYCLE : 200- 248: skdea GsgR-DrHaNLGSGqIDaELLvaAvkVAgaPVICetAEEGrkDdiAflrE ktsg J 10: 92.9295 4( 3) G-x(0,2)-R-x(0,1)-D-x-H-x-[NRS]-L-G-[EQS]-G-x-[IL]-[DG]-x-[DE]-[ALV]-[FL]-x(2)-[AI]-x(2)-[DSV]-[ADE]-x(2)-[DPQ]-[GV]-I-[CP]-x(2)-[AL]-E-[ET]-[GIP]-x(2)-[DN]-x(2)-[AG]-x(3)-[ET] Occurences: 4(3) APN1_YEAST : 237- 285: skapl GanR-DlHeRLGQGyLGiDVFrmIahSEylQGIPivLETPyeNdeGygnE iklme END4_ECOLI : 225- 273: akstf Gs-RvDrHhSLGEGnIGhDAFrwImqDDrfDGIPliLETInpDiwAeeiT wlkaq END_MYCLE : 200- 248: skdea GsgR-DrHaNLGSGqIDaELLvaAvkVAgaPVICetAEEGrkDdiAflrE ktsg END_MYCLE : 202- 248: deags G--R-DrHaNLGSGqIDaELLvaAvkVAgaPVICetAEEGrkDdiAflrE ktsg K 11: 73.8401 3( 3) D-x-H-x-[NRS]-L-G-[EQS]-G-x(1,3)-I-x(0,2)-D-[AV]-x(3)-[IV]-x(2)-[DSV]-[DEK]-x(2)-[DGQ]-[AG]-[IP]-[PV]-[IL]-x(2)-[ET]-[AT]-x(3)-[DNR]-x(2)-[ADG]-x-[AEG] Occurences: 3(3) APN1_YEAST : 241- 283: lganr DlHeRLGQGylgI--DVfrmIahSEylQGIPIvlETpyeNdeGyG neikl END4_ECOLI : 229- 271: fgsrv DrHhSLGEGn--IghDAfrwImqDDrfDGIPLilETinpDiwAeE itwlk END_MYCLE : 204- 244: agsgr DrHaNLGSGq--I--DAellVaaVKvaGAPVIceTAeegRkdDiA flrek L 12: 62.3264 3( 3) E-x(3,5)-G-x-C-[IL]-D-T-C-H-[AT]-[FW]-A-A-G-x-[DG]-[IL]-x(2)-[PTV]-x-[DET] Occurences: 3(3) APN1_YEAST : 181- 207: vigmi EdksriGvCIDTCHTFAAGyDIstTeT fnnfw END4_ECOLI : 169- 195: iidgv EdksrvGvCIDTCHAFAAGyDLrtPaE cektf END_MYCLE : 154- 178: wdvig Etgi--GfCLDTCHAWAAGeGLihVvD rikai M 13: 61.8264 3( 3) E-x(3,5)-G-x(0,1)-C-[IL]-D-T-C-H-[AT]-[FW]-A-A-G-x-[DG]-[IL]-x(2)-[PTV]-x-[DET] Occurences: 3(3) APN1_YEAST : 181- 207: vigmi EdksriGvCIDTCHTFAAGyDIstTeT fnnfw END4_ECOLI : 169- 195: iidgv EdksrvGvCIDTCHAFAAGyDLrtPaE cektf END_MYCLE : 154- 178: wdvig Etgi--GfCLDTCHAWAAGeGLihVvD rikai N 14: 57.9089 3( 3) E-x(3,5)-G-[FV]-C-[IL]-D-T-C-H-x(0,2)-A-A-G-x-[DG]-[IL]-x(2)-[PTV]-x-[DET] Occurences: 3(3) APN1_YEAST : 181- 207: vigmi EdksriGVCIDTCHtfAAGyDIstTeT fnnfw END4_ECOLI : 169- 195: iidgv EdksrvGVCIDTCHafAAGyDLrtPaE cektf END_MYCLE : 154- 178: wdvig Etgi--GFCLDTCHawAAGeGLihVvD rikai O 15: 54.7389 3( 3) G-[FV]-C-[IL]-D-T-C-H-x(0,2)-A-A-G-x-[DG]-[IL]-x(2)-[PTV]-x-[DET] Occurences: 3(3) APN1_YEAST : 187- 207: dksri GVCIDTCHtfAAGyDIstTeT fnnfw END4_ECOLI : 175- 195: dksrv GVCIDTCHafAAGyDLrtPaE cektf END_MYCLE : 158- 178: getgi GFCLDTCHawAAGeGLihVvD rikai P 16: 51.6997 3( 3) G-x(3)-D-T-C-H-[AT]-[FW]-A-A-G-x-[DG]-[IL]-x(2)-[PTV]-x-[DET] Occurences: 3(3) APN1_YEAST : 187- 207: dksri GvciDTCHTFAAGyDIstTeT fnnfw END4_ECOLI : 175- 195: dksrv GvciDTCHAFAAGyDLrtPaE cektf END_MYCLE : 158- 178: getgi GfclDTCHAWAAGeGLihVvD rikai Q 17: 51.1997 3( 3) G-x(2,3)-D-T-C-H-[AT]-[FW]-A-A-G-x-[DG]-[IL]-x(2)-[PTV]-x-[DET] Occurences: 3(3) APN1_YEAST : 187- 207: dksri GvciDTCHTFAAGyDIstTeT fnnfw END4_ECOLI : 175- 195: dksrv GvciDTCHAFAAGyDLrtPaE cektf END_MYCLE : 158- 178: getgi GfclDTCHAWAAGeGLihVvD rikai R 18: 47.3572 3( 3) C-[IL]-D-T-C-H-x(0,2)-A-A-G-x-[DG]-[IL]-x(2)-[PTV]-x-[DET] Occurences: 3(3) APN1_YEAST : 189- 207: srigv CIDTCHtfAAGyDIstTeT fnnfw END4_ECOLI : 177- 195: srvgv CIDTCHafAAGyDLrtPaE cektf END_MYCLE : 160- 178: tgigf CLDTCHawAAGeGLihVvD rikai S 19: 39.3648 3( 3) T-x(1,2)-V-x-[AIV]-x-[IL]-E-N-x-A-G-x(0,1)-G-[DNS]-x-[ALV] Occurences: 3(3) APN1_YEAST : 149- 166: kaike TkfVkIvLENmAGtGNlV gsslv END4_ECOLI : 137- 154: ialdk TqgVtAvIENtAGqGSnL gfkfe END_MYCLE : 122- 137: ldqlq Td-VpVyLENtAG-GDhA marrf T 20: 39.0712 3( 3) R-x(0,1)-D-x-H-x-[NRS]-L-G-[EQS]-G-x(1,3)-I-[DG]-x(3)-[FLM] Occurences: 3(3) APN1_YEAST : 240- 258: plgan R-DlHeRLGQGylgIDvfrM iahse END4_ECOLI : 227- 244: stfgs RvDrHhSLGEGn--IGhdaF rwimq END_MYCLE : 203- 219: eagsg R-DrHaNLGSGq--IDaelL vaavk Number of patterns evaluated by Pratt:8876 Total running time: 2 seconds