------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file AP_NUCLEASE_F1_3 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename AP_NUCLEASE_F1_3.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: APE1_BOVIN 317 APE1_HUMAN 317 APE1_MOUSE 316 APE1_RAT 316 ARP_ARATH 527 EX3_ECOLI 268 EX3_HAEIN 267 EXOA_BACSU 252 EXOA_STRPN 275 RRP1_DROME 679 Pratt run started at Thu Feb 6 18:52:57 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 23.0203 11( 10) L-x(2,4)-E-x(2,4)-D-x(4)-Q-E-x-K 2: 20.8503 10( 10) N-x-G-x-R-x-D-x(4)-S 3: 19.8503 10( 10) D-x(0,1)-I-x(2,3)-Q-E-x-K 4: 19.3503 11( 10) G-x(0,2)-D-x-N-x(4,5)-I-D 5: 19.3503 11( 10) D-x(0,2)-I-x(2,3)-Q-E-x-K 6: 16.6802 10( 10) G-x-R-x-D-x(4)-S 7: 16.6802 10( 10) P-x(4)-G-D-x-N 8: 16.6802 10( 10) K-x(4)-N-x(2)-G-x-R 9: 16.1802 11( 10) D-x-N-x(4,5)-I-D 10: 16.1802 12( 10) I-x(2,3)-Q-E-x-K 11: 16.1802 11( 10) D-I-x(4)-E-x(1,2)-K 12: 16.1802 10( 10) K-x(2)-S-x(5)-L-x(0,1)-A 13: 15.6802 10( 10) G-x(0,1)-F-x(3)-E-x(0,1)-R 14: 15.6802 10( 10) L-x(4)-P-x(0,1)-V-x(2,3)-G 15: 15.6802 16( 10) N-x(2,3)-G-L-x(0,1)-R 16: 15.6802 10( 10) D-x(2)-G-x(0,1)-R-x(0,1)-I 17: 15.1802 10( 10) W-x(1,2)-D-Y-x(1,3)-S 18: 15.1802 10( 10) G-x(5)-H-x(2,4)-I-x(4,5)-P 19: 15.1802 10( 10) S-x-N-x(2,3)-L-x(1,3)-A 20: 12.5102 10( 10) D-H-x-P Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 65.3230 10( 10) P-[ILV]-[ILV]-[AIL]-x-G-D-x-N-x-[AS]-x(2)-[DEP]-[IL]-D-[IL]-x(2)-[GP]-x-[AEGNS]-N-x(2)-[NRS]-x-[GL]-x-[ST]-x(3)-[RS]-x(3)-[EGT] B 2: 40.8537 10( 10) G-x(0,1)-D-x-N-x(4,5)-I-D-x(3)-[APV]-x-[AEGNQS]-x(3)-[ENS]-x-[CG]-[FV]-[DEST]-x-[EGQ]-x(4)-[FIM] C 3: 37.1837 10( 10) D-x-N-x(4,5)-I-D-x(3)-[APV]-x-[AEGNQS]-x(3)-[ENS]-x-[CG]-[FV]-[DEST]-x-[EGQ]-x(4)-[FIM] D 4: 36.5906 10( 10) G-x(2)-[AN]-x-[APS]-H-x(2,4)-I-x(4,5)-P-x-[AGNSV]-x(3)-[NQS]-x(3)-[STV]-x-[DEQ]-[DE]-x(4)-[EGT] E 5: 34.9271 11( 10) L-x(2,4)-E-x(2,4)-D-[IV]-[FIL]-[ACG]-[IL]-Q-E-x-K F 6: 30.8594 10( 10) K-[FIL]-x-S-[FW]-[NS]-[AIV]-x-[GQS]-L-x(0,1)-A G 7: 29.5771 10( 10) N-x-G-x-R-[IL]-D-x(2)-[LV]-x-S-x(2)-[FILV] H 8: 25.4070 10( 10) G-x-R-[IL]-D-x(2)-[LV]-x-S-x(2)-[FILV] I 9: 24.7458 10( 10) L-x(4)-P-x(0,1)-V-x(2,3)-G-x(2)-[NT]-x-[ANS]-x(4)-[DK] J 10: 23.7939 10( 10) D-H-[ACT]-P-[IV]-x-[AIL]-x-[FIL] K 11: 23.2020 10( 10) G-x(0,1)-F-[PST]-x-[EGQ]-E-x(0,1)-R-[ADEQ] L 12: 21.5929 10( 10) K-x(4)-N-x-[ADNT]-G-x-R-[AGI] M 13: 21.5440 14( 10) N-x(2,3)-G-L-x(0,1)-R-[AL]-x(2)-[HKR] N 14: 21.4501 10( 10) D-I-x(2)-[GIL]-[DEQ]-E-x(1,2)-K O 15: 19.8503 10( 10) D-x(0,1)-I-x(2,3)-Q-E-x-K P 16: 19.3503 11( 10) D-x(0,2)-I-x(2,3)-Q-E-x-K Q 17: 18.6112 10( 10) S-[FW]-N-x(2,3)-L-x(1,3)-A R 18: 18.2778 10( 10) D-x(2)-G-x(0,1)-R-x(0,1)-I-[DTV] S 19: 17.4367 10( 10) W-x(1,2)-D-Y-x(1,3)-S-x(2)-[FILV] T 20: 16.1802 12( 10) I-x(2,3)-Q-E-x-K Best patterns with alignements: fitness hits(seqs) Pattern A 1: 65.3230 10( 10) P-[ILV]-[ILV]-[AIL]-x-G-D-x-N-x-[AS]-x(2)-[DEP]-[IL]-D-[IL]-x(2)-[GP]-x-[AEGNS]-N-x(2)-[NRS]-x-[GL]-x-[ST]-x(3)-[RS]-x(3)-[EGT] Occurences: 10(10) APE1_BOVIN : 203- 240: lasrk PLVLcGDlNvAheEIDLrnPkGNkkNaGfTpqeRqgfG ellqa APE1_HUMAN : 203- 240: lasrk PLVLcGDlNvAheEIDLrnPkGNkkNaGfTpqeRqgfG ellqa APE1_MOUSE : 202- 239: lasrk PLVLcGDlNvAheEIDLrnPkGNkkNaGfTpqeRqgfG ellqa APE1_RAT : 202- 239: lasrk PLVLcGDlNvAheEIDLrnPkGNkkNaGfTpqeRqgfG emlqa ARP_ARATH : 414- 451: leksk PVVLtGDlNcAheEIDIfnPaGNkrSaGfTieeRqsfG anlld EX3_ECOLI : 145- 182: lkrdn PVLImGDmNiSptDLDIgiGeENrkRwLrTgkcSflpE erewm EX3_HAEIN : 145- 182: hdksn PILImGDmNiSpsDLDIgiGdENrkRwLrTgkcSflpE erawy EXOA_BACSU : 139- 176: ldqkk PVILcGDlNvAhqEIDLknPkANrnNaGfSdqeReafT rflea EXOA_STRPN : 161- 198: ldkek PVLAtGDyNvAhnEIDLanPaSNrrSpGfTdeeRagfT nllat RRP1_DROME : 566- 603: ldalk PVVIcGDmNvShmPIDLenPkNNtkNaGfTqeeRdkmT ellgl B 2: 40.8537 10( 10) G-x(0,1)-D-x-N-x(4,5)-I-D-x(3)-[APV]-x-[AEGNQS]-x(3)-[ENS]-x-[CG]-[FV]-[DEST]-x-[EGQ]-x(4)-[FIM] Occurences: 10(10) APE1_BOVIN : 208- 239: plvlc G-DlNvaheeIDlrnPkGnkkNaGFTpQerqgF gellq APE1_HUMAN : 208- 239: plvlc G-DlNvaheeIDlrnPkGnkkNaGFTpQerqgF gellq APE1_MOUSE : 207- 238: plvlc G-DlNvaheeIDlrnPkGnkkNaGFTpQerqgF gellq APE1_RAT : 207- 238: plvlc G-DlNvaheeIDlrnPkGnkkNaGFTpQerqgF gemlq ARP_ARATH : 419- 450: pvvlt G-DlNcaheeIDifnPaGnkrSaGFTiEerqsF ganll EX3_ECOLI : 219- 250: dyrsk GfDdNrglr-IDlllAsQplaEcCVEtGidyeI rsmek EX3_HAEIN : 219- 250: dyrsk GfDdNrglr-IDhilVsQklaErCVDvGialdI ramek EXOA_BACSU : 144- 175: pvilc G-DlNvahqeIDlknPkAnrnNaGFSdQereaF trfle EXOA_STRPN : 166- 197: pvlat G-DyNvahneIDlanPaSnrrSpGFTdEeragF tnlla RRP1_DROME : 571- 602: pvvic G-DmNvshmpIDlenPkNntkNaGFTqEerdkM tellg C 3: 37.1837 10( 10) D-x-N-x(4,5)-I-D-x(3)-[APV]-x-[AEGNQS]-x(3)-[ENS]-x-[CG]-[FV]-[DEST]-x-[EGQ]-x(4)-[FIM] Occurences: 10(10) APE1_BOVIN : 209- 239: lvlcg DlNvaheeIDlrnPkGnkkNaGFTpQerqgF gellq APE1_HUMAN : 209- 239: lvlcg DlNvaheeIDlrnPkGnkkNaGFTpQerqgF gellq APE1_MOUSE : 208- 238: lvlcg DlNvaheeIDlrnPkGnkkNaGFTpQerqgF gellq APE1_RAT : 208- 238: lvlcg DlNvaheeIDlrnPkGnkkNaGFTpQerqgF gemlq ARP_ARATH : 420- 450: vvltg DlNcaheeIDifnPaGnkrSaGFTiEerqsF ganll EX3_ECOLI : 221- 250: rskgf DdNrglr-IDlllAsQplaEcCVEtGidyeI rsmek EX3_HAEIN : 221- 250: rskgf DdNrglr-IDhilVsQklaErCVDvGialdI ramek EXOA_BACSU : 145- 175: vilcg DlNvahqeIDlknPkAnrnNaGFSdQereaF trfle EXOA_STRPN : 167- 197: vlatg DyNvahneIDlanPaSnrrSpGFTdEeragF tnlla RRP1_DROME : 572- 602: vvicg DmNvshmpIDlenPkNntkNaGFTqEerdkM tellg D 4: 36.5906 10( 10) G-x(2)-[AN]-x-[APS]-H-x(2,4)-I-x(4,5)-P-x-[AGNSV]-x(3)-[NQS]-x(3)-[STV]-x-[DEQ]-[DE]-x(4)-[EGT] Occurences: 10(10) APE1_BOVIN : 208- 240: plvlc GdlNvAHee--Idlrn-PkGnkkNagfTpQErqgfG ellqa APE1_HUMAN : 208- 240: plvlc GdlNvAHee--Idlrn-PkGnkkNagfTpQErqgfG ellqa APE1_MOUSE : 207- 239: plvlc GdlNvAHee--Idlrn-PkGnkkNagfTpQErqgfG ellqa APE1_RAT : 207- 239: plvlc GdlNvAHee--Idlrn-PkGnkkNagfTpQErqgfG emlqa ARP_ARATH : 419- 451: pvvlt GdlNcAHee--Idifn-PaGnkrSagfTiEErqsfG anlld EX3_ECOLI : 10- 45: sfnin GlrArPHqleaIvekhqPdViglQetkVhDDmfplE evanv EX3_HAEIN : 10- 45: sfnin GlrArPHqleaIiekyqPdViglQeikVaDEafpyE itenl EXOA_BACSU : 144- 176: pvilc GdlNvAHqe--Idlkn-PkAnrnNagfSdQEreafT rflea EXOA_STRPN : 166- 198: pvlat GdyNvAHne--Idlan-PaSnrrSpgfTdEEragfT nllat RRP1_DROME : 571- 603: pvvic GdmNvSHmp--Idlen-PkNntkNagfTqEErdkmT ellgl E 5: 34.9271 11( 10) L-x(2,4)-E-x(2,4)-D-[IV]-[FIL]-[ACG]-[IL]-Q-E-x-K Occurences: 11(10) APE1_BOVIN : 80- 97: ikkkg LdwvkEeap-DILCLQEtK csenk APE1_HUMAN : 80- 97: ikkkg LdwvkEeap-DILCLQEtK csenk APE1_MOUSE : 79- 96: ikkkg LdwvkEeap-DILCLQEtK csenk APE1_RAT : 79- 96: ikkkg LdwvkEeap-DILCLQEtK csenk ARP_ARATH : 291- 306: fsalq Laqr-Enf--DILCLQEtK lqvkd EX3_ECOLI : 18- 36: arphq LeaivEkhqpDVIGLQEtK vhddm EX3_HAEIN : 18- 36: arphq LeaiiEkyqpDVIGLQEiK vadea EXOA_BACSU : 21- 38: rkmdf LsylkEeda-DIICLQEtK iqdgq EXOA_BACSU : 24- 38: dflsy Lke--Eda--DIICLQEtK iqdgq EXOA_STRPN : 32- 46: evlqt Lva--Ena--DIIAIQEtK lsakg RRP1_DROME : 448- 463: kdglq Lidl-Eep--DIFCLQEtK candq F 6: 30.8594 10( 10) K-[FIL]-x-S-[FW]-[NS]-[AIV]-x-[GQS]-L-x(0,1)-A Occurences: 10(10) APE1_BOVIN : 62- 73: ksatl KIcSWNVdGLrA wikkk APE1_HUMAN : 62- 73: kpatl KIcSWNVdGLrA wikkk APE1_MOUSE : 61- 72: ksatl KIcSWNVdGLrA wikkk APE1_RAT : 61- 72: ksatl KIcSWNVdGLrA wikkk ARP_ARATH : 282- 292: lrgll KFeSFSAlQL-A qrenf EX3_ECOLI : 2- 13: m KFvSFNInGLrA rphql EX3_HAEIN : 2- 13: m KFiSFNInGLrA rphql EXOA_BACSU : 2- 13: m KLiSWNVnGLrA vmrkm EXOA_STRPN : 2- 13: m KLiSWNIdSLnA altsd RRP1_DROME : 428- 439: kefnl KIcSWNVaGLrA wlkkd G 7: 29.5771 10( 10) N-x-G-x-R-[IL]-D-x(2)-[LV]-x-S-x(2)-[FILV] Occurences: 10(10) APE1_BOVIN : 276- 290: narsk NvGwRLDyfLlSqsV lpalc APE1_HUMAN : 276- 290: narsk NvGwRLDyfLlShsL lpalc APE1_MOUSE : 275- 289: narsk NvGwRLDyfLlShsL lpalc APE1_RAT : 275- 289: narsk NvGwRLDyfLlShsL lpalc ARP_ARATH : 486- 500: ggrkt NkGwRLDyfLvSqsI aanvh EX3_ECOLI : 223- 237: kgfdd NrGlRIDllLaSqpL aeccv EX3_HAEIN : 223- 237: kgfdd NrGlRIDhiLvSqkL aercv EXOA_BACSU : 211- 225: gardr NiGwRIDyfVvSesL keqie EXOA_STRPN : 234- 248: tskin NtGwRIDywLtSnrI adkvt RRP1_DROME : 638- 652: narar NvGwRLDycLvSerF vpkvv H 8: 25.4070 10( 10) G-x-R-[IL]-D-x(2)-[LV]-x-S-x(2)-[FILV] Occurences: 10(10) APE1_BOVIN : 278- 290: rsknv GwRLDyfLlSqsV lpalc APE1_HUMAN : 278- 290: rsknv GwRLDyfLlShsL lpalc APE1_MOUSE : 277- 289: rsknv GwRLDyfLlShsL lpalc APE1_RAT : 277- 289: rsknv GwRLDyfLlShsL lpalc ARP_ARATH : 488- 500: rktnk GwRLDyfLvSqsI aanvh EX3_ECOLI : 225- 237: fddnr GlRIDllLaSqpL aeccv EX3_HAEIN : 225- 237: fddnr GlRIDhiLvSqkL aercv EXOA_BACSU : 213- 225: rdrni GwRIDyfVvSesL keqie EXOA_STRPN : 236- 248: kinnt GwRIDywLtSnrI adkvt RRP1_DROME : 640- 652: rarnv GwRLDycLvSerF vpkvv I 9: 24.7458 10( 10) L-x(4)-P-x(0,1)-V-x(2,3)-G-x(2)-[NT]-x-[ANS]-x(4)-[DK] Occurences: 10(10) APE1_BOVIN : 198- 218: kflkg LasrkPlVlc-GdlNvAheeiD lrnpk APE1_HUMAN : 198- 218: kflkg LasrkPlVlc-GdlNvAheeiD lrnpk APE1_MOUSE : 197- 217: kflkd LasrkPlVlc-GdlNvAheeiD lrnpk APE1_RAT : 197- 217: kflkd LasrkPlVlc-GdlNvAheeiD lrnpk ARP_ARATH : 409- 429: nhike LekskPvVlt-GdlNcAheeiD ifnpa ARP_ARATH : 409- 429: nhike LekskP-VvltGdlNcAheeiD ifnpa EX3_ECOLI : 140- 160: ylete LkrdnP-VlimGdmNiSptdlD igige EX3_HAEIN : 68- 89: ygval LtkqePkVirrGfpTdNedaqK riima EXOA_BACSU : 134- 154: syile LdqkkP-VilcGdlNvAhqeiD lknpk EXOA_STRPN : 156- 176: eylae LdkekP-VlatGdyNvAhneiD lanpa RRP1_DROME : 561- 581: ayvkk LdalkPvVic-GdmNvShmpiD lenpk RRP1_DROME : 561- 581: ayvkk LdalkP-VvicGdmNvShmpiD lenpk J 10: 23.7939 10( 10) D-H-[ACT]-P-[IV]-x-[AIL]-x-[FIL] Occurences: 10(10) APE1_BOVIN : 307- 315: kalgs DHCPItLyL al APE1_HUMAN : 307- 315: kalgs DHCPItLyL al APE1_MOUSE : 306- 314: kalgs DHCPItLyL al APE1_RAT : 306- 314: kalgs DHCPItLyL al ARP_ARATH : 517- 525: dings DHCPIgLiL kl EX3_ECOLI : 258- 266: mekps DHAPVwAtF rr EX3_HAEIN : 258- 266: mekps DHAPIwAeF k EXOA_BACSU : 242- 250: dvmgs DHCPVeLiI ni EXOA_STRPN : 265- 273: sgarq DHTPIvLeI dl RRP1_DROME : 669- 677: qclgs DHCPItIfF ni K 11: 23.2020 10( 10) G-x(0,1)-F-[PST]-x-[EGQ]-E-x(0,1)-R-[ADEQ] Occurences: 10(10) APE1_BOVIN : 230- 237: nkkna G-FTpQE-RQ gfgel APE1_HUMAN : 230- 237: nkkna G-FTpQE-RQ gfgel APE1_MOUSE : 229- 236: nkkna G-FTpQE-RQ gfgel APE1_RAT : 229- 236: nkkna G-FTpQE-RQ gfgem ARP_ARATH : 441- 448: nkrsa G-FTiEE-RQ sfgan EX3_ECOLI : 108- 117: vtvin GyFPqGEsRD hpikf EX3_HAEIN : 108- 117: ltvin GyFPqGEsRA hetkf EXOA_BACSU : 166- 173: nrnna G-FSdQE-RE aftrf EXOA_STRPN : 188- 195: nrrsp G-FTdEE-RA gftnl RRP1_DROME : 593- 600: ntkna G-FTqEE-RD kmtel L 12: 21.5929 10( 10) K-x(4)-N-x-[ADNT]-G-x-R-[AGI] Occurences: 10(10) APE1_BOVIN : 62- 73: ksatl KicswNvDGlRA wikkk APE1_HUMAN : 62- 73: kpatl KicswNvDGlRA wikkk APE1_MOUSE : 61- 72: ksatl KicswNvDGlRA wikkk APE1_RAT : 61- 72: ksatl KicswNvDGlRA wikkk ARP_ARATH : 268- 279: gtkcv KvmtwNvNGlRG llkfe EX3_ECOLI : 2- 13: m KfvsfNiNGlRA rphql EX3_HAEIN : 2- 13: m KfisfNiNGlRA rphql EXOA_BACSU : 2- 13: m KliswNvNGlRA vmrkm EXOA_STRPN : 228- 239: waqrs KtskiNnTGwRI dywlt RRP1_DROME : 428- 439: kefnl KicswNvAGlRA wlkkd M 13: 21.5440 14( 10) N-x(2,3)-G-L-x(0,1)-R-[AL]-x(2)-[HKR] Occurences: 14(10) APE1_BOVIN : 67- 76: kicsw Nvd-GL-RAwiK kkgld APE1_BOVIN : 173- 184: tayvp NagrGLvRLeyR qrwde APE1_HUMAN : 67- 76: kicsw Nvd-GL-RAwiK kkgld APE1_HUMAN : 173- 184: tayvp NagrGLvRLeyR qrwde APE1_MOUSE : 66- 75: kicsw Nvd-GL-RAwiK kkgld APE1_MOUSE : 172- 183: tayvp NagrGLvRLeyR qrwde APE1_RAT : 66- 75: kicsw Nvd-GL-RAwiK kkgld APE1_RAT : 172- 183: tayvp NagrGLvRLeyR qrwde ARP_ARATH : 383- 394: ntyvp NsgdGLkRLsyR ieewd EX3_ECOLI : 7- 16: kfvsf Nin-GL-RArpH qleai EX3_HAEIN : 7- 16: kfisf Nin-GL-RArpH qleai EXOA_BACSU : 7- 16: klisw Nvn-GL-RAvmR kmdfl EXOA_STRPN : 131- 142: qvytp NagdGLkRLeeR qvwda RRP1_DROME : 433- 442: kicsw Nva-GL-RAwlK kdglq N 14: 21.4501 10( 10) D-I-x(2)-[GIL]-[DEQ]-E-x(1,2)-K Occurences: 10(10) APE1_BOVIN : 89- 97: keeap DIlcLQEt-K csenk APE1_HUMAN : 89- 97: keeap DIlcLQEt-K csenk APE1_MOUSE : 88- 96: keeap DIlcLQEt-K csenk APE1_RAT : 88- 96: keeap DIlcLQEt-K csenk ARP_ARATH : 298- 306: qrenf DIlcLQEt-K lqvkd EX3_ECOLI : 160- 169: sptdl DIgiGEEnrK rwlrt EX3_HAEIN : 160- 169: spsdl DIgiGDEnrK rwlrt EXOA_BACSU : 30- 38: keeda DIicLQEt-K iqdgq EXOA_STRPN : 38- 46: vaena DIiaIQEt-K lsakg RRP1_DROME : 455- 463: dleep DIfcLQEt-K candq O 15: 19.8503 10( 10) D-x(0,1)-I-x(2,3)-Q-E-x-K Occurences: 10(10) APE1_BOVIN : 89- 97: keeap D-IlclQEtK csenk APE1_HUMAN : 89- 97: keeap D-IlclQEtK csenk APE1_MOUSE : 88- 96: keeap D-IlclQEtK csenk APE1_RAT : 88- 96: keeap D-IlclQEtK csenk ARP_ARATH : 298- 306: qrenf D-IlclQEtK lqvkd EX3_ECOLI : 28- 36: ekhqp DvIgl-QEtK vhddm EX3_HAEIN : 28- 36: ekyqp DvIgl-QEiK vadea EXOA_BACSU : 30- 38: keeda DiIcl-QEtK iqdgq EXOA_BACSU : 30- 38: keeda D-IiclQEtK iqdgq EXOA_STRPN : 38- 46: vaena DiIai-QEtK lsakg EXOA_STRPN : 38- 46: vaena D-IiaiQEtK lsakg RRP1_DROME : 455- 463: dleep D-IfclQEtK candq P 16: 19.3503 11( 10) D-x(0,2)-I-x(2,3)-Q-E-x-K Occurences: 11(10) APE1_BOVIN : 89- 97: keeap D--IlclQEtK csenk APE1_HUMAN : 89- 97: keeap D--IlclQEtK csenk APE1_MOUSE : 88- 96: keeap D--IlclQEtK csenk APE1_RAT : 88- 96: keeap D--IlclQEtK csenk ARP_ARATH : 298- 306: qrenf D--IlclQEtK lqvkd EX3_ECOLI : 28- 36: ekhqp Dv-Igl-QEtK vhddm EX3_HAEIN : 28- 36: ekyqp Dv-Igl-QEiK vadea EXOA_BACSU : 28- 38: ylkee DadIiclQEtK iqdgq EXOA_BACSU : 30- 38: keeda Di-Icl-QEtK iqdgq EXOA_BACSU : 30- 38: keeda D--IiclQEtK iqdgq EXOA_STRPN : 38- 46: vaena Di-Iai-QEtK lsakg EXOA_STRPN : 38- 46: vaena D--IiaiQEtK lsakg RRP1_DROME : 455- 463: dleep D--IfclQEtK candq Q 17: 18.6112 10( 10) S-[FW]-N-x(2,3)-L-x(1,3)-A Occurences: 10(10) APE1_BOVIN : 65- 73: tlkic SWNvdgLr--A wikkk APE1_HUMAN : 65- 73: tlkic SWNvdgLr--A wikkk APE1_MOUSE : 64- 72: tlkic SWNvdgLr--A wikkk APE1_RAT : 64- 72: tlkic SWNvdgLr--A wikkk ARP_ARATH : 33- 42: gvgtr SFNkr-LmsnA tafsi EX3_ECOLI : 5- 13: mkfv SFNingLr--A rphql EX3_HAEIN : 5- 13: mkfi SFNingLr--A rphql EXOA_BACSU : 5- 13: mkli SWNvngLr--A vmrkm EXOA_STRPN : 5- 13: mkli SWNidsLn--A altsd EXOA_STRPN : 5- 14: mkli SWNidsLna-A ltsds RRP1_DROME : 431- 439: nlkic SWNvagLr--A wlkkd R 18: 18.2778 10( 10) D-x(2)-G-x(0,1)-R-x(0,1)-I-[DTV] Occurences: 10(10) APE1_BOVIN : 151- 158: geeeh DqeG-RvIV aeyda APE1_HUMAN : 151- 158: gdeeh DqeG-RvIV aefds APE1_MOUSE : 150- 157: geeeh DqeG-RvIV aefes APE1_RAT : 150- 157: geeeh DqeG-RvIV aefes ARP_ARATH : 361- 367: glsgh DteG-R-IV taefd EX3_ECOLI : 222- 229: skgfd DnrGlR-ID lllas EX3_HAEIN : 222- 229: skgfd DnrGlR-ID hilvs EXOA_BACSU : 87- 94: gveeh DqeG-RvIT lefen EXOA_STRPN : 109- 116: apstm DleG-RiIT lefda RRP1_DROME : 514- 521: gneef DdvG-RmIT aeyek S 19: 17.4367 10( 10) W-x(1,2)-D-Y-x(1,3)-S-x(2)-[FILV] Occurences: 10(10) APE1_BOVIN : 279- 290: sknvg WrlDYfllSqsV lpalc APE1_HUMAN : 279- 290: sknvg WrlDYfllShsL lpalc APE1_MOUSE : 278- 289: sknvg WrlDYfllShsL lpalc APE1_RAT : 278- 289: sknvg WrlDYfllShsL lpalc ARP_ARATH : 489- 500: ktnkg WrlDYflvSqsI aanvh EX3_ECOLI : 212- 220: adrfs Wf-DYr--SkgF ddnrg EX3_HAEIN : 212- 220: ndkfs Wf-DYr--SkgF ddnrg EXOA_BACSU : 214- 225: drnig WriDYfvvSesL keqie EXOA_STRPN : 237- 248: inntg WriDYwltSnrI adkvt RRP1_DROME : 641- 652: arnvg WrlDYclvSerF vpkvv T 20: 16.1802 12( 10) I-x(2,3)-Q-E-x-K Occurences: 12(10) APE1_BOVIN : 90- 97: eeapd IlclQEtK csenk APE1_HUMAN : 90- 97: eeapd IlclQEtK csenk APE1_MOUSE : 89- 96: eeapd IlclQEtK csenk APE1_RAT : 89- 96: eeapd IlclQEtK csenk ARP_ARATH : 299- 306: renfd IlclQEtK lqvkd EX3_ECOLI : 30- 36: hqpdv Igl-QEtK vhddm EX3_HAEIN : 30- 36: yqpdv Igl-QEiK vadea EXOA_BACSU : 31- 38: eedad IiclQEtK iqdgq EXOA_BACSU : 32- 38: edadi Icl-QEtK iqdgq EXOA_STRPN : 39- 46: aenad IiaiQEtK lsakg EXOA_STRPN : 40- 46: enadi Iai-QEtK lsakg RRP1_DROME : 456- 463: leepd IfclQEtK candq Number of patterns evaluated by Pratt:3741 Total running time: 4 seconds