------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file APPLE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename APPLE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: FA11_HUMAN 625 KAL_HUMAN 638 KAL_MOUSE 638 KAL_RAT 638 Pratt run started at Thu Feb 6 18:52:04 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 161.6319 4( 4) C-A-G-Y-x-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T 2: 157.4619 4( 4) K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-x-E-Y-x-D-W-I-L-E-K 3: 157.4619 4( 4) C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-x-E-Y-x-D-W-I-L-E 4: 157.4619 4( 4) A-C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-x-E-Y-x-D-W-I-L 5: 157.4619 4( 4) D-A-C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-x-E-Y-x-D-W-I 6: 157.4619 4( 4) E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-x-E-Y 7: 157.4619 4( 4) A-G-Y-x-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T 8: 157.4619 4( 4) M-x-C-A-G-Y-x-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V 9: 153.7919 4( 4) G-Y-x(0,1)-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(5)-P-G-V-Y-T-x-V 10: 153.2919 4( 4) D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-x-E-Y-x-D-W-I-L-E-K-x-Q 11: 153.2919 4( 4) G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-x-E-Y-x-D-W-I-L-E-K 12: 153.2919 4( 4) G-x-D-A-C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-x-E-Y-x-D 13: 153.2919 4( 4) G-G-x-D-A-C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-x-E-Y 14: 153.2919 4( 4) Y-x-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V 15: 153.2919 4( 4) G-x(2)-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V 16: 150.1218 4( 4) G-Y-x-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(5)-P-G-V-Y-T 17: 149.1218 4( 4) S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-x-E-Y-x-D-W-I-L-E-K-x-Q 18: 145.9518 4( 4) Y-x(4)-I-x(3)-M-x-C-A-G-Y-x-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G 19: 145.4518 4( 4) I-x(5)-C-A-G-Y-x-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R 20: 144.9518 4( 4) G-G-P-L-x-C-K-H-x(3)-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-x-E-Y-x-D-W-I-L-E-K-x-Q Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 179.3433 4( 4) G-Y-x(0,1)-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-[AG]-[QR]-[KR]-[DE]-[QR]-P-G-V-Y-T-x-V B 2: 175.6732 4( 4) G-Y-x-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-[AG]-[QR]-[KR]-[DE]-[QR]-P-G-V-Y-T C 3: 174.8230 4( 4) Y-[QR]-[DG]-[HY]-x-I-[NT]-x(2)-M-[IV]-C-A-G-Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G D 4: 174.5010 4( 4) C-A-G-Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T E 5: 173.5558 4( 4) M-[IV]-C-A-G-Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V F 6: 172.4760 4( 4) K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D-W-I-L-E-K G 7: 172.4760 4( 4) C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D-W-I-L-E H 8: 172.4760 4( 4) A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D-W-I-L I 9: 172.4760 4( 4) D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D-W-I J 10: 172.1214 4( 4) I-[NT]-x(2)-M-[IV]-C-A-G-Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-[EK] K 11: 170.3309 4( 4) A-G-Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T L 12: 170.3309 4( 4) G-Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V M 13: 169.6799 4( 4) E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y N 14: 168.3060 4( 4) D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D-W-I-L-E-K-x-Q O 15: 168.3060 4( 4) G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D-W-I-L-E-K P 16: 168.3060 4( 4) G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D Q 17: 166.1609 4( 4) Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V R 18: 165.5098 4( 4) G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y S 19: 165.2157 4( 4) M-[IV]-C-A-G-Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P T 20: 164.1360 4( 4) S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D-W-I-L-E-K-x-Q Best patterns with alignements: fitness hits(seqs) Pattern A 1: 179.3433 4( 4) G-Y-x(0,1)-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-[AG]-[QR]-[KR]-[DE]-[QR]-P-G-V-Y-T-x-V Occurences: 4(4) FA11_HUMAN : 562- 611: kmica GYrEGGkDACKGDSGGPLSCKHNEvWhLVGITSWGEGCAQRERPGVYTnV veyvd KAL_HUMAN : 565- 614: rmvca GYkEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCARREQPGVYTkV aeymd KAL_MOUSE : 565- 614: qmica GYkEGGtDACKGDSGGPLVCKHSGrWqLVGITSWGEGCGRKDQPGVYTkV seymd KAL_RAT : 565- 614: qmica GYkEGGiDACKGDSGGPLVCKHSGrWqLVGITSWGEGCARKEQPGVYTkV aeyid B 2: 175.6732 4( 4) G-Y-x-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-[AG]-[QR]-[KR]-[DE]-[QR]-P-G-V-Y-T Occurences: 4(4) FA11_HUMAN : 562- 609: kmica GYrEGGkDACKGDSGGPLSCKHNEvWhLVGITSWGEGCAQRERPGVYT nvvey KAL_HUMAN : 565- 612: rmvca GYkEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCARREQPGVYT kvaey KAL_MOUSE : 565- 612: qmica GYkEGGtDACKGDSGGPLVCKHSGrWqLVGITSWGEGCGRKDQPGVYT kvsey KAL_RAT : 565- 612: qmica GYkEGGiDACKGDSGGPLVCKHSGrWqLVGITSWGEGCARKEQPGVYT kvaey C 3: 174.8230 4( 4) Y-[QR]-[DG]-[HY]-x-I-[NT]-x(2)-M-[IV]-C-A-G-Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G Occurences: 4(4) FA11_HUMAN : 549- 598: ecqkr YRGHkIThkMICAGYREGGkDACKGDSGGPLSCKHNEvWhLVGITSWGEG caqre KAL_HUMAN : 552- 601: ecqkr YQDYkITqrMVCAGYKEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEG carre KAL_MOUSE : 552- 601: ecqkk YRDYvINkqMICAGYKEGGtDACKGDSGGPLVCKHSGrWqLVGITSWGEG cgrkd KAL_RAT : 552- 601: ecqkk YRDYvITkqMICAGYKEGGiDACKGDSGGPLVCKHSGrWqLVGITSWGEG carke D 4: 174.5010 4( 4) C-A-G-Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T Occurences: 4(4) FA11_HUMAN : 560- 609: thkmi CAGYREGGkDACKGDSGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGVYT nvvey KAL_HUMAN : 563- 612: tqrmv CAGYKEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCarReq-PGVYT kvaey KAL_HUMAN : 563- 612: tqrmv CAGYKEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGVYT kvaey KAL_MOUSE : 563- 612: nkqmi CAGYKEGGtDACKGDSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGVYT kvsey KAL_RAT : 563- 612: tkqmi CAGYKEGGiDACKGDSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGVYT kvaey E 5: 173.5558 4( 4) M-[IV]-C-A-G-Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V Occurences: 4(4) FA11_HUMAN : 558- 607: kithk MICAGYREGGkDACKGDSGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGV ytnvv KAL_HUMAN : 561- 610: kitqr MVCAGYKEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCarReq-PGV ytkva KAL_HUMAN : 561- 610: kitqr MVCAGYKEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGV ytkva KAL_MOUSE : 561- 610: vinkq MICAGYKEGGtDACKGDSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGV ytkvs KAL_RAT : 561- 610: vitkq MICAGYKEGGiDACKGDSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGV ytkva F 6: 172.4760 4( 4) K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D-W-I-L-E-K Occurences: 4(4) FA11_HUMAN : 572- 621: gkdac KGDSGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGVYTnVVEYVDWILEK tqav KAL_HUMAN : 575- 624: gkdac KGDSGGPLVCKHNGmWrLVGITSWGEGCarReq-PGVYTkVAEYMDWILEK tqssd KAL_HUMAN : 575- 624: gkdac KGDSGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGVYTkVAEYMDWILEK tqssd KAL_MOUSE : 575- 624: gtdac KGDSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGVYTkVSEYMDWILEK tqssd KAL_RAT : 575- 624: gidac KGDSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGVYTkVAEYIDWILEK iqssk G 7: 172.4760 4( 4) C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D-W-I-L-E Occurences: 4(4) FA11_HUMAN : 571- 620: ggkda CKGDSGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGVYTnVVEYVDWILE ktqav KAL_HUMAN : 574- 623: ggkda CKGDSGGPLVCKHNGmWrLVGITSWGEGCarReq-PGVYTkVAEYMDWILE ktqss KAL_HUMAN : 574- 623: ggkda CKGDSGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGVYTkVAEYMDWILE ktqss KAL_MOUSE : 574- 623: ggtda CKGDSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGVYTkVSEYMDWILE ktqss KAL_RAT : 574- 623: ggida CKGDSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGVYTkVAEYIDWILE kiqss H 8: 172.4760 4( 4) A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D-W-I-L Occurences: 4(4) FA11_HUMAN : 570- 619: eggkd ACKGDSGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGVYTnVVEYVDWIL ektqa KAL_HUMAN : 573- 622: eggkd ACKGDSGGPLVCKHNGmWrLVGITSWGEGCarReq-PGVYTkVAEYMDWIL ektqs KAL_HUMAN : 573- 622: eggkd ACKGDSGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGVYTkVAEYMDWIL ektqs KAL_MOUSE : 573- 622: eggtd ACKGDSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGVYTkVSEYMDWIL ektqs KAL_RAT : 573- 622: eggid ACKGDSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGVYTkVAEYIDWIL ekiqs I 9: 172.4760 4( 4) D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D-W-I Occurences: 4(4) FA11_HUMAN : 569- 618: reggk DACKGDSGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGVYTnVVEYVDWI lektq KAL_HUMAN : 572- 621: keggk DACKGDSGGPLVCKHNGmWrLVGITSWGEGCarReq-PGVYTkVAEYMDWI lektq KAL_HUMAN : 572- 621: keggk DACKGDSGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGVYTkVAEYMDWI lektq KAL_MOUSE : 572- 621: keggt DACKGDSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGVYTkVSEYMDWI lektq KAL_RAT : 572- 621: keggi DACKGDSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGVYTkVAEYIDWI lekiq J 10: 172.1214 4( 4) I-[NT]-x(2)-M-[IV]-C-A-G-Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-[EK] Occurences: 4(4) FA11_HUMAN : 554- 603: yrghk IThkMICAGYREGGkDACKGDSGGPLSCKHNEvWhLVGITSWGEGCaqRE rpgvy KAL_HUMAN : 557- 606: yqdyk ITqrMVCAGYKEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCarRE qpgvy KAL_MOUSE : 557- 605: yrdyv INkqMICAGYKEGGtDACKGDSGGPLVCKHSGrWqLVGITSWGEGCg-RK dqpgv KAL_RAT : 557- 605: yrdyv ITkqMICAGYKEGGiDACKGDSGGPLVCKHSGrWqLVGITSWGEGCa-RK eqpgv K 11: 170.3309 4( 4) A-G-Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T Occurences: 4(4) FA11_HUMAN : 561- 609: hkmic AGYREGGkDACKGDSGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGVYT nvvey KAL_HUMAN : 564- 612: qrmvc AGYKEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCarReq-PGVYT kvaey KAL_HUMAN : 564- 612: qrmvc AGYKEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGVYT kvaey KAL_MOUSE : 564- 612: kqmic AGYKEGGtDACKGDSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGVYT kvsey KAL_RAT : 564- 612: kqmic AGYKEGGiDACKGDSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGVYT kvaey L 12: 170.3309 4( 4) G-Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V Occurences: 4(4) FA11_HUMAN : 562- 611: kmica GYREGGkDACKGDSGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGVYTnV veyvd KAL_HUMAN : 565- 614: rmvca GYKEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCarReq-PGVYTkV aeymd KAL_HUMAN : 565- 614: rmvca GYKEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGVYTkV aeymd KAL_MOUSE : 565- 614: qmica GYKEGGtDACKGDSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGVYTkV seymd KAL_RAT : 565- 614: qmica GYKEGGiDACKGDSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGVYTkV aeyid M 13: 169.6799 4( 4) E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y Occurences: 4(4) FA11_HUMAN : 565- 614: cagyr EGGkDACKGDSGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGVYTnVVEY vdwil KAL_HUMAN : 568- 617: cagyk EGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCarReq-PGVYTkVAEY mdwil KAL_HUMAN : 568- 617: cagyk EGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGVYTkVAEY mdwil KAL_MOUSE : 568- 617: cagyk EGGtDACKGDSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGVYTkVSEY mdwil KAL_RAT : 568- 617: cagyk EGGiDACKGDSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGVYTkVAEY idwil N 14: 168.3060 4( 4) D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D-W-I-L-E-K-x-Q Occurences: 4(4) FA11_HUMAN : 574- 623: dackg DSGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGVYTnVVEYVDWILEKtQ av KAL_HUMAN : 577- 626: dackg DSGGPLVCKHNGmWrLVGITSWGEGCarReq-PGVYTkVAEYMDWILEKtQ ssdgk KAL_HUMAN : 577- 626: dackg DSGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGVYTkVAEYMDWILEKtQ ssdgk KAL_MOUSE : 577- 626: dackg DSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGVYTkVSEYMDWILEKtQ ssdvr KAL_RAT : 577- 626: dackg DSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGVYTkVAEYIDWILEKiQ ssker O 15: 168.3060 4( 4) G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D-W-I-L-E-K Occurences: 4(4) FA11_HUMAN : 573- 621: kdack GDSGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGVYTnVVEYVDWILEK tqav KAL_HUMAN : 576- 624: kdack GDSGGPLVCKHNGmWrLVGITSWGEGCarReq-PGVYTkVAEYMDWILEK tqssd KAL_HUMAN : 576- 624: kdack GDSGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGVYTkVAEYMDWILEK tqssd KAL_MOUSE : 576- 624: tdack GDSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGVYTkVSEYMDWILEK tqssd KAL_RAT : 576- 624: idack GDSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGVYTkVAEYIDWILEK iqssk P 16: 168.3060 4( 4) G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D Occurences: 4(4) FA11_HUMAN : 567- 616: gyreg GkDACKGDSGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGVYTnVVEYVD wilek KAL_HUMAN : 570- 619: gykeg GkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCarReq-PGVYTkVAEYMD wilek KAL_HUMAN : 570- 619: gykeg GkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGVYTkVAEYMD wilek KAL_MOUSE : 570- 619: gykeg GtDACKGDSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGVYTkVSEYMD wilek KAL_RAT : 570- 619: gykeg GiDACKGDSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGVYTkVAEYID wilek Q 17: 166.1609 4( 4) Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V Occurences: 4(4) FA11_HUMAN : 563- 611: micag YREGGkDACKGDSGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGVYTnV veyvd KAL_HUMAN : 566- 614: mvcag YKEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCarReq-PGVYTkV aeymd KAL_HUMAN : 566- 614: mvcag YKEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGVYTkV aeymd KAL_MOUSE : 566- 614: micag YKEGGtDACKGDSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGVYTkV seymd KAL_RAT : 566- 614: micag YKEGGiDACKGDSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGVYTkV aeyid R 18: 165.5098 4( 4) G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y Occurences: 4(4) FA11_HUMAN : 566- 614: agyre GGkDACKGDSGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGVYTnVVEY vdwil KAL_HUMAN : 569- 617: agyke GGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCarReq-PGVYTkVAEY mdwil KAL_HUMAN : 569- 617: agyke GGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGVYTkVAEY mdwil KAL_MOUSE : 569- 617: agyke GGtDACKGDSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGVYTkVSEY mdwil KAL_RAT : 569- 617: agyke GGiDACKGDSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGVYTkVAEY idwil S 19: 165.2157 4( 4) M-[IV]-C-A-G-Y-[KR]-E-G-G-x-D-A-C-K-G-D-S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P Occurences: 4(4) FA11_HUMAN : 558- 605: kithk MICAGYREGGkDACKGDSGGPLSCKHNEvWhLVGITSWGEGCaqRer-P gvytn KAL_HUMAN : 561- 608: kitqr MVCAGYKEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCarReq-P gvytk KAL_HUMAN : 561- 608: kitqr MVCAGYKEGGkDACKGDSGGPLVCKHNGmWrLVGITSWGEGCa-RreqP gvytk KAL_MOUSE : 561- 608: vinkq MICAGYKEGGtDACKGDSGGPLVCKHSGrWqLVGITSWGEGCg-RkdqP gvytk KAL_RAT : 561- 608: vitkq MICAGYKEGGiDACKGDSGGPLVCKHSGrWqLVGITSWGEGCa-RkeqP gvytk T 20: 164.1360 4( 4) S-G-G-P-L-[SV]-C-K-H-[NS]-[EG]-x-W-x-L-V-G-I-T-S-W-G-E-G-C-x(1,2)-R-x(2,3)-P-G-V-Y-T-x-V-[ASV]-E-Y-[IMV]-D-W-I-L-E-K-x-Q Occurences: 4(4) FA11_HUMAN : 575- 623: ackgd SGGPLSCKHNEvWhLVGITSWGEGCaqRer-PGVYTnVVEYVDWILEKtQ av KAL_HUMAN : 578- 626: ackgd SGGPLVCKHNGmWrLVGITSWGEGCarReq-PGVYTkVAEYMDWILEKtQ ssdgk KAL_HUMAN : 578- 626: ackgd SGGPLVCKHNGmWrLVGITSWGEGCa-RreqPGVYTkVAEYMDWILEKtQ ssdgk KAL_MOUSE : 578- 626: ackgd SGGPLVCKHSGrWqLVGITSWGEGCg-RkdqPGVYTkVSEYMDWILEKtQ ssdvr KAL_RAT : 578- 626: ackgd SGGPLVCKHSGrWqLVGITSWGEGCa-RkeqPGVYTkVAEYIDWILEKiQ ssker Number of patterns evaluated by Pratt:196507 Total running time: 47 seconds