------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 3 sequences from file ALPHA_L_FUCOSIDASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 3 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ALPHA_L_FUCOSIDASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: FUCO_DICDI 461 FUCO_HUMAN 461 FUCO_RAT 462 Pratt run started at Thu Feb 6 18:35:35 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 128.2716 3( 3) D-x-V-x(2)-Y-x-P-x-L-I-W-x-D-G-x-W-x(5)-Y-W-x-S-T-x-F-L-x-W-L-Y-x(0,1)-N-x(0,1)-S-x-V-K-D-x-V-x-V-N-D-R-W-G 2: 124.1015 3( 3) V-x(2)-Y-x-P-x-L-I-W-x-D-G-x-W-x(5)-Y-W-x-S-T-x-F-L-x-W-L-Y-x(0,1)-N-x(0,1)-S-x-V-K-D-x-V-x-V-N-D-R-W-G 3: 124.1015 3( 3) L-x-D-x-V-x(2)-Y-x-P-x-L-I-W-x-D-G-x-W-x(5)-Y-W-x-S-T-x-F-L-x-W-L-Y-x(0,1)-N-x(0,1)-S-x-V-K-D-x-V-x-V-N-D-R 4: 123.1015 3( 3) G-A-K-Y-V-V-L-T-x-K-H-H-E-G-x-T-x-W-x-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-x-V-G-E-L 5: 119.9315 3( 3) Y-x-P-x-L-I-W-x-D-G-x-W-x(5)-Y-W-x-S-T-x-F-L-x-W-L-Y-x(0,1)-N-x(0,1)-S-x-V-K-D-x-V-x-V-N-D-R-W-G 6: 118.9315 3( 3) A-K-Y-V-V-L-T-x-K-H-H-E-G-x-T-x-W-x-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-x-V-G-E-L 7: 115.7614 3( 3) P-x-L-I-W-x-D-G-x-W-x(5)-Y-W-x-S-T-x-F-L-x-W-L-Y-x(0,1)-N-x(0,1)-S-x-V-K-D-x-V-x-V-N-D-R-W-G 8: 115.7614 3( 3) M-x(2)-L-x-D-x-V-x(2)-Y-x-P-x-L-I-W-x-D-G-x-W-x(5)-Y-W-x-S-T-x-F-L-x-W-L-Y-x(0,1)-N-x(0,1)-S-x-V-K-D-x-V-x-V 9: 114.7614 3( 3) K-Y-V-V-L-T-x-K-H-H-E-G-x-T-x-W-x-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-x-V-G-E-L 10: 111.5914 3( 3) L-I-W-x-D-G-x-W-x(5)-Y-W-x-S-T-x-F-L-x-W-L-Y-x(0,1)-N-x(0,1)-S-x-V-K-D-x-V-x-V-N-D-R-W-G 11: 110.5914 3( 3) Y-V-V-L-T-x-K-H-H-E-G-x-T-x-W-x-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-x-V-G-E-L 12: 107.4213 3( 3) I-W-x-D-G-x-W-x(5)-Y-W-x-S-T-x-F-L-x-W-L-Y-x(0,1)-N-x(0,1)-S-x-V-K-D-x-V-x-V-N-D-R-W-G 13: 107.4213 3( 3) V-x(4)-M-x(2)-L-x-D-x-V-x(2)-Y-x-P-x-L-I-W-x-D-G-x-W-x(5)-Y-W-x-S-T-x-F-L-x-W-L-Y-x(0,1)-N-x(0,1)-S-x-V-K 14: 106.4213 3( 3) V-V-L-T-x-K-H-H-E-G-x-T-x-W-x-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-x-V-G-E-L 15: 103.2513 3( 3) W-x-D-G-x-W-x(5)-Y-W-x-S-T-x-F-L-x-W-L-Y-x(0,1)-N-x(0,1)-S-x-V-K-D-x-V-x-V-N-D-R-W-G 16: 103.2513 3( 3) Q-x(2)-V-x(4)-M-x(2)-L-x-D-x-V-x(2)-Y-x-P-x-L-I-W-x-D-G-x-W-x(5)-Y-W-x-S-T-x-F-L-x-W-L-Y-x(0,1)-N-x(0,1)-S 17: 102.2513 3( 3) V-L-T-x-K-H-H-E-G-x-T-x-W-x-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-x-V-G-E-L 18: 102.2513 3( 3) Y-x-P-x-W-x(4)-S-R-P-L-P-x-W-x-D-x(2)-K-F-G-x-F-x-H-x-G-x(2)-S-V-P-A-x(1,3)-G-x(1,3)-E-W-x-W-W 19: 99.5812 3( 3) T-x(3)-V-x(4)-M-x(2)-L-x-D-x-V-x(2)-Y-x-P-x-L-I-W-x-D-G-x-W-x(5)-Y-W-x-S-T-x-F-L-x-W-L-Y-x(0,1)-N 20: 99.0812 3( 3) D-G-x-W-x(5)-Y-W-x-S-T-x-F-L-x-W-L-Y-x(0,1)-N-x(0,1)-S-x-V-K-D-x-V-x-V-N-D-R-W-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 171.8941 3( 3) D-[IL]-V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G B 2: 169.9620 3( 3) Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G-[QS]-[EN]-[CS]-[RS] C 3: 168.4645 3( 3) P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G-[QS]-[EN]-[CS]-[RS]-[CD]-[HKR] D 4: 167.7240 3( 3) L-x-D-[IL]-V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R E 5: 167.6692 3( 3) V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G-[QS] F 6: 165.2939 3( 3) L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G-[QS]-[EN]-[CS]-[RS]-[CD]-[HKR]-x-G G 7: 165.2939 3( 3) I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G-[QS]-[EN]-[CS]-[RS]-[CD]-[HKR]-x-G-G H 8: 164.3236 3( 3) D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G-[QS]-[EN]-[CS]-[RS]-[CD]-[HKR]-x-G-G-[FY]-Y-[NT] I 9: 164.3084 3( 3) W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G-[QS]-[EN]-[CS]-[RS]-[CD]-[HKR]-x-G-G-[FY] J 10: 162.5659 3( 3) M-x-[EQ]-L-x-D-[IL]-V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V K 11: 154.2198 3( 3) V-[DS]-[AET]-x(2)-M-x-[EQ]-L-x-D-[IL]-V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K L 12: 150.5464 3( 3) T-Q-x-[FY]-V-[DS]-[AET]-x(2)-M-x-[EQ]-L-x-D-[IL]-V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N M 13: 150.0464 3( 3) Q-x-[FY]-V-[DS]-[AET]-x(2)-M-x-[EQ]-L-x-D-[IL]-V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S N 14: 149.9466 3( 3) Y-[GT]-P-[DT]-W-[DP]-[QS]-[IL]-[DN]-S-R-P-L-P-x-W-[FY]-D-[DE]-[AV]-K-F-G-[ILV]-F-[IV]-H-[FW]-G-[IV]-[FY]-S-V-P-A-x(1,3)-G-x(1,3)-E-W-[FY]-W-W O 15: 148.1676 3( 3) G-A-K-Y-V-V-L-T-[AST]-K-H-H-E-G-[FY]-T-x-W-[NP]-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-[IL]-V-G-E-L-[GT]-x-[AS]-[LV]-[KR] P 16: 147.2707 3( 3) A-K-Y-V-V-L-T-[AST]-K-H-H-E-G-[FY]-T-x-W-[NP]-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-[IL]-V-G-E-L-[GT]-x-[AS]-[LV]-[KR]-x(2)-[GN] Q 17: 146.3872 3( 3) K-Y-V-V-L-T-[AST]-K-H-H-E-G-[FY]-T-x-W-[NP]-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-[IL]-V-G-E-L-[GT]-x-[AS]-[LV]-[KR]-x(2)-[GN]-[IL] R 18: 145.3941 3( 3) Y-V-V-L-T-[AST]-K-H-H-E-G-[FY]-T-x-W-[NP]-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-[IL]-V-G-E-L-[GT]-x-[AS]-[LV]-[KR]-x(2)-[GN]-[IL]-[HR] S 19: 142.6918 3( 3) V-[DS]-[AET]-x(2)-M-x-[EQ]-L-x-D-[IL]-V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S T 20: 141.2241 3( 3) V-L-T-[AST]-K-H-H-E-G-[FY]-T-x-W-[NP]-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-[IL]-V-G-E-L-[GT]-x-[AS]-[LV]-[KR]-x(2)-[GN]-[IL]-[HR]-x-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 171.8941 3( 3) D-[IL]-V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G Occurences: 3(3) FUCO_DICDI : 209- 258: mkqlk DIVTtYEPELIWADGDWmqLSNYWkSTEFLSWLYtN-SSVKDTVIVNDRWG secrd FUCO_HUMAN : 212- 261: mpely DLVNsYKPDLIWSDGEWecPDTYWnSTNFLSWLY-NdSPVKDEVVVNDRWG qnssc FUCO_RAT : 213- 262: mpely DLVNrYKPDLIWSDGEWecPDSYWnSTEFLAWLY-NeSPVKDQVVVNDRWG qncsc B 2: 169.9620 3( 3) Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G-[QS]-[EN]-[CS]-[RS] Occurences: 3(3) FUCO_DICDI : 214- 262: divtt YEPELIWADGDWmqLSNYWkSTEFLSWLYtN-SSVKDTVIVNDRWGSECR dkngg FUCO_HUMAN : 217- 265: dlvns YKPDLIWSDGEWecPDTYWnSTNFLSWLY-NdSPVKDEVVVNDRWGQNSS chhgg FUCO_RAT : 218- 266: dlvnr YKPDLIWSDGEWecPDSYWnSTEFLAWLY-NeSPVKDQVVVNDRWGQNCS crhgg C 3: 168.4645 3( 3) P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G-[QS]-[EN]-[CS]-[RS]-[CD]-[HKR] Occurences: 3(3) FUCO_DICDI : 216- 264: vttye PELIWADGDWmqLSNYWkSTEFLSWLYtN-SSVKDTVIVNDRWGSECRDK nggfy FUCO_HUMAN : 219- 267: vnsyk PDLIWSDGEWecPDTYWnSTNFLSWLY-NdSPVKDEVVVNDRWGQNSSCH hggyy FUCO_RAT : 220- 268: vnryk PDLIWSDGEWecPDSYWnSTEFLAWLY-NeSPVKDQVVVNDRWGQNCSCR hggyy D 4: 167.7240 3( 3) L-x-D-[IL]-V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R Occurences: 3(3) FUCO_DICDI : 207- 256: ilmkq LkDIVTtYEPELIWADGDWmqLSNYWkSTEFLSWLYtN-SSVKDTVIVNDR wgsec FUCO_HUMAN : 210- 259: ktmpe LyDLVNsYKPDLIWSDGEWecPDTYWnSTNFLSWLY-NdSPVKDEVVVNDR wgqns FUCO_RAT : 211- 260: ktmpe LyDLVNrYKPDLIWSDGEWecPDSYWnSTEFLAWLY-NeSPVKDQVVVNDR wgqnc E 5: 167.6692 3( 3) V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G-[QS] Occurences: 3(3) FUCO_DICDI : 211- 259: qlkdi VTtYEPELIWADGDWmqLSNYWkSTEFLSWLYtN-SSVKDTVIVNDRWGS ecrdk FUCO_HUMAN : 214- 262: elydl VNsYKPDLIWSDGEWecPDTYWnSTNFLSWLY-NdSPVKDEVVVNDRWGQ nssch FUCO_RAT : 215- 263: elydl VNrYKPDLIWSDGEWecPDSYWnSTEFLAWLY-NeSPVKDQVVVNDRWGQ ncscr F 6: 165.2939 3( 3) L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G-[QS]-[EN]-[CS]-[RS]-[CD]-[HKR]-x-G Occurences: 3(3) FUCO_DICDI : 218- 266: tyepe LIWADGDWmqLSNYWkSTEFLSWLYtN-SSVKDTVIVNDRWGSECRDKnG gfytg FUCO_HUMAN : 221- 269: sykpd LIWSDGEWecPDTYWnSTNFLSWLY-NdSPVKDEVVVNDRWGQNSSCHhG gyync FUCO_RAT : 222- 270: rykpd LIWSDGEWecPDSYWnSTEFLAWLY-NeSPVKDQVVVNDRWGQNCSCRhG gyync G 7: 165.2939 3( 3) I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G-[QS]-[EN]-[CS]-[RS]-[CD]-[HKR]-x-G-G Occurences: 3(3) FUCO_DICDI : 219- 267: yepel IWADGDWmqLSNYWkSTEFLSWLYtN-SSVKDTVIVNDRWGSECRDKnGG fytga FUCO_HUMAN : 222- 270: ykpdl IWSDGEWecPDTYWnSTNFLSWLY-NdSPVKDEVVVNDRWGQNSSCHhGG yynce FUCO_RAT : 223- 271: ykpdl IWSDGEWecPDSYWnSTEFLAWLY-NeSPVKDQVVVNDRWGQNCSCRhGG yynce H 8: 164.3236 3( 3) D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G-[QS]-[EN]-[CS]-[RS]-[CD]-[HKR]-x-G-G-[FY]-Y-[NT] Occurences: 3(3) FUCO_DICDI : 222- 270: eliwa DGDWmqLSNYWkSTEFLSWLYtN-SSVKDTVIVNDRWGSECRDKnGGFYT gadhf FUCO_HUMAN : 225- 273: dliws DGEWecPDTYWnSTNFLSWLY-NdSPVKDEVVVNDRWGQNSSCHhGGYYN cedkf FUCO_RAT : 226- 274: dliws DGEWecPDSYWnSTEFLAWLY-NeSPVKDQVVVNDRWGQNCSCRhGGYYN cedky I 9: 164.3084 3( 3) W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V-N-D-R-W-G-[QS]-[EN]-[CS]-[RS]-[CD]-[HKR]-x-G-G-[FY] Occurences: 3(3) FUCO_DICDI : 220- 268: epeli WADGDWmqLSNYWkSTEFLSWLYtN-SSVKDTVIVNDRWGSECRDKnGGF ytgad FUCO_HUMAN : 223- 271: kpdli WSDGEWecPDTYWnSTNFLSWLY-NdSPVKDEVVVNDRWGQNSSCHhGGY ynced FUCO_RAT : 224- 272: kpdli WSDGEWecPDSYWnSTEFLAWLY-NeSPVKDQVVVNDRWGQNCSCRhGGY ynced J 10: 162.5659 3( 3) M-x-[EQ]-L-x-D-[IL]-V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K-D-[EQT]-V-[IV]-V Occurences: 3(3) FUCO_DICDI : 204- 253: vdeil MkQLkDIVTtYEPELIWADGDWmqLSNYWkSTEFLSWLYtN-SSVKDTVIV ndrwg FUCO_HUMAN : 207- 256: vsakt MpELyDLVNsYKPDLIWSDGEWecPDTYWnSTNFLSWLY-NdSPVKDEVVV ndrwg FUCO_RAT : 208- 257: vstkt MpELyDLVNrYKPDLIWSDGEWecPDSYWnSTEFLAWLY-NeSPVKDQVVV ndrwg K 11: 154.2198 3( 3) V-[DS]-[AET]-x(2)-M-x-[EQ]-L-x-D-[IL]-V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S-[PS]-V-K Occurences: 3(3) FUCO_DICDI : 199- 248: ttqvy VDEilMkQLkDIVTtYEPELIWADGDWmqLSNYWkSTEFLSWLYtN-SSVK dtviv FUCO_HUMAN : 202- 251: ktqhf VSAktMpELyDLVNsYKPDLIWSDGEWecPDTYWnSTNFLSWLY-NdSPVK devvv FUCO_RAT : 203- 252: ktqhf VSTktMpELyDLVNrYKPDLIWSDGEWecPDSYWnSTEFLAWLY-NeSPVK dqvvv L 12: 150.5464 3( 3) T-Q-x-[FY]-V-[DS]-[AET]-x(2)-M-x-[EQ]-L-x-D-[IL]-V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N Occurences: 3(3) FUCO_DICDI : 195- 244: gknpt TQvYVDEilMkQLkDIVTtYEPELIWADGDWmqLSNYWkSTEFLSWLYtN ssvkd FUCO_HUMAN : 198- 246: kngfk TQhFVSAktMpELyDLVNsYKPDLIWSDGEWecPDTYWnSTNFLSWLY-N dspvk FUCO_RAT : 199- 247: knglk TQhFVSTktMpELyDLVNrYKPDLIWSDGEWecPDSYWnSTEFLAWLY-N espvk M 13: 150.0464 3( 3) Q-x-[FY]-V-[DS]-[AET]-x(2)-M-x-[EQ]-L-x-D-[IL]-V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S Occurences: 3(3) FUCO_DICDI : 196- 245: knptt QvYVDEilMkQLkDIVTtYEPELIWADGDWmqLSNYWkSTEFLSWLYtN-S svkdt FUCO_HUMAN : 199- 248: ngfkt QhFVSAktMpELyDLVNsYKPDLIWSDGEWecPDTYWnSTNFLSWLY-NdS pvkde FUCO_RAT : 200- 249: nglkt QhFVSTktMpELyDLVNrYKPDLIWSDGEWecPDSYWnSTEFLAWLY-NeS pvkdq N 14: 149.9466 3( 3) Y-[GT]-P-[DT]-W-[DP]-[QS]-[IL]-[DN]-S-R-P-L-P-x-W-[FY]-D-[DE]-[AV]-K-F-G-[ILV]-F-[IV]-H-[FW]-G-[IV]-[FY]-S-V-P-A-x(1,3)-G-x(1,3)-E-W-[FY]-W-W Occurences: 3(3) FUCO_DICDI : 21- 67: iksqq YGPTWDQINSRPLPgWYDDVKFGIFIHFGIYSVPAfanGgyaEWYWW tlknp FUCO_HUMAN : 32- 74: qpprr YTPDWPSLDSRPLPaWFDEAKFGVFIHWGVFSVPAw--Gs--EWFWW hwqge FUCO_RAT : 33- 75: laphh YTPDWPSLDSRPLPrWFDEAKFGLFVHWGVYSVPAw--Gs--EWFWW hwqge O 15: 148.1676 3( 3) G-A-K-Y-V-V-L-T-[AST]-K-H-H-E-G-[FY]-T-x-W-[NP]-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-[IL]-V-G-E-L-[GT]-x-[AS]-[LV]-[KR] Occurences: 3(3) FUCO_DICDI : 118- 163: iieks GAKYVVLTSKHHEGYTlWNSeqSWNWNS--VetGPgiDIVGELTkSVK nmglh FUCO_HUMAN : 123- 168: lfqaa GAKYVVLTTKHHEGFTnWPSpvSWNWNSkdV--GPhrDLVGELGtALR krnir FUCO_RAT : 124- 169: lfqaa GAKYVVLTAKHHEGFTnWPSavSWNWNSkdV--GPhrDLVGELGaAVR krnir P 16: 147.2707 3( 3) A-K-Y-V-V-L-T-[AST]-K-H-H-E-G-[FY]-T-x-W-[NP]-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-[IL]-V-G-E-L-[GT]-x-[AS]-[LV]-[KR]-x(2)-[GN] Occurences: 3(3) FUCO_DICDI : 119- 166: ieksg AKYVVLTSKHHEGYTlWNSeqSWNWNS--VetGPgiDIVGELTkSVKnmG lhmgl FUCO_HUMAN : 124- 171: fqaag AKYVVLTTKHHEGFTnWPSpvSWNWNSkdV--GPhrDLVGELGtALRkrN irygl FUCO_RAT : 125- 172: fqaag AKYVVLTAKHHEGFTnWPSavSWNWNSkdV--GPhrDLVGELGaAVRkrN irygl Q 17: 146.3872 3( 3) K-Y-V-V-L-T-[AST]-K-H-H-E-G-[FY]-T-x-W-[NP]-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-[IL]-V-G-E-L-[GT]-x-[AS]-[LV]-[KR]-x(2)-[GN]-[IL] Occurences: 3(3) FUCO_DICDI : 120- 167: eksga KYVVLTSKHHEGYTlWNSeqSWNWNS--VetGPgiDIVGELTkSVKnmGL hmgly FUCO_HUMAN : 125- 172: qaaga KYVVLTTKHHEGFTnWPSpvSWNWNSkdV--GPhrDLVGELGtALRkrNI rygly FUCO_RAT : 126- 173: qaaga KYVVLTAKHHEGFTnWPSavSWNWNSkdV--GPhrDLVGELGaAVRkrNI rygly R 18: 145.3941 3( 3) Y-V-V-L-T-[AST]-K-H-H-E-G-[FY]-T-x-W-[NP]-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-[IL]-V-G-E-L-[GT]-x-[AS]-[LV]-[KR]-x(2)-[GN]-[IL]-[HR] Occurences: 3(3) FUCO_DICDI : 121- 168: ksgak YVVLTSKHHEGYTlWNSeqSWNWNS--VetGPgiDIVGELTkSVKnmGLH mglyh FUCO_HUMAN : 126- 173: aagak YVVLTTKHHEGFTnWPSpvSWNWNSkdV--GPhrDLVGELGtALRkrNIR yglyh FUCO_RAT : 127- 174: aagak YVVLTAKHHEGFTnWPSavSWNWNSkdV--GPhrDLVGELGaAVRkrNIR yglyh S 19: 142.6918 3( 3) V-[DS]-[AET]-x(2)-M-x-[EQ]-L-x-D-[IL]-V-[NT]-x-Y-[EK]-P-[DE]-L-I-W-[AS]-D-G-[DE]-W-x(2)-[LP]-[DS]-[NST]-Y-W-x-S-T-[EN]-F-L-[AS]-W-L-Y-x(0,1)-N-x(0,1)-S Occurences: 3(3) FUCO_DICDI : 199- 245: ttqvy VDEilMkQLkDIVTtYEPELIWADGDWmqLSNYWkSTEFLSWLYtN-S svkdt FUCO_HUMAN : 202- 248: ktqhf VSAktMpELyDLVNsYKPDLIWSDGEWecPDTYWnSTNFLSWLY-NdS pvkde FUCO_RAT : 203- 249: ktqhf VSTktMpELyDLVNrYKPDLIWSDGEWecPDSYWnSTEFLAWLY-NeS pvkdq T 20: 141.2241 3( 3) V-L-T-[AST]-K-H-H-E-G-[FY]-T-x-W-[NP]-S-x(2)-S-W-N-W-N-S-x(0,2)-V-x(0,2)-G-P-x(2)-D-[IL]-V-G-E-L-[GT]-x-[AS]-[LV]-[KR]-x(2)-[GN]-[IL]-[HR]-x-G Occurences: 3(3) FUCO_DICDI : 123- 170: gakyv VLTSKHHEGYTlWNSeqSWNWNS--VetGPgiDIVGELTkSVKnmGLHmG lyhsl FUCO_HUMAN : 128- 175: gakyv VLTTKHHEGFTnWPSpvSWNWNSkdV--GPhrDLVGELGtALRkrNIRyG lyhsl FUCO_RAT : 129- 176: gakyv VLTAKHHEGFTnWPSavSWNWNSkdV--GPhrDLVGELGaAVRkrNIRyG lyhsl Number of patterns evaluated by Pratt:68688 Total running time: 12 seconds