------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file ALPHA_GALACTOSIDASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ALPHA_GALACTOSIDASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AGA1_PEDPE 733 AGA2_PEDPE 719 AGAL_ASPNG 545 AGAL_CYATE 411 AGAL_HUMAN 429 AGAL_STRMU 720 MEL1_YEAST 471 MEL2_YEAST 471 MEL5_YEAST 471 MEL6_YEAST 471 NAGA_HUMAN 411 RAFA_ECOLI 708 Pratt run started at Thu Feb 6 18:35:25 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.1802 12( 12) D-D-x-W-x(3,4)-R 2: 12.5102 14( 12) G-x(3)-D-x(3)-L 3: 12.5102 12( 12) D-x(2)-K-x-D 4: 12.0102 19( 12) A-x(3,4)-D-x-L 5: 12.0102 19( 12) G-L-x(1,2)-L 6: 12.0102 22( 12) G-x-G-x(2,3)-D 7: 12.0102 25( 12) G-x(1,2)-G-x(3)-D 8: 12.0102 22( 12) G-x(0,1)-G-x(3)-D 9: 12.0102 17( 12) L-G-x(3,4)-D 10: 12.0102 12( 12) D-x-W-x(3,4)-R 11: 12.0102 13( 12) G-x(1,2)-L-x(2)-E 12: 12.0102 13( 12) L-x(2)-T-x(2,3)-G 13: 12.0102 13( 12) L-x(2,3)-T-x(3)-G 14: 11.5102 23( 12) G-x(0,1)-L-x(2,3)-E 15: 11.5102 19( 12) G-x(0,2)-L-x(2)-E 16: 11.5102 24( 12) D-x(3,4)-L-x(1,2)-D 17: 11.5102 29( 12) A-x(4,5)-S-x(0,1)-G 18: 11.5102 25( 12) L-x(3,4)-G-x(0,1)-S 19: 11.5102 18( 12) L-x(2,3)-G-x(0,1)-S 20: 11.5102 20( 12) L-x(2,3)-G-x(2,3)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 23.9146 12( 12) D-D-[CG]-W-x(3,4)-R-x-[ADGS]-[DENS] B 2: 20.5920 12( 12) D-D-x-W-x(3,4)-R-x-[ADGS]-[DENS] C 3: 19.7446 12( 12) D-[CG]-W-x(3,4)-R-x-[ADGS]-[DENS] D 4: 18.3484 12( 12) D-x-[ILV]-K-x-D-x-[CN] E 5: 14.6352 13( 12) L-G-x(3,4)-D-x(4)-[APT] F 6: 14.4121 13( 12) G-x(3)-D-x-[ADEGT]-x-L G 7: 13.9293 18( 12) G-[AGIPV]-G-x(2,3)-D H 8: 12.5102 14( 12) G-x(3)-D-x(3)-L I 9: 12.0102 19( 12) A-x(3,4)-D-x-L J 10: 12.0102 19( 12) G-L-x(1,2)-L K 11: 12.0102 25( 12) G-x(1,2)-G-x(3)-D L 12: 12.0102 22( 12) G-x(0,1)-G-x(3)-D M 13: 12.0102 13( 12) G-x(1,2)-L-x(2)-E N 14: 12.0102 13( 12) L-x(2)-T-x(2,3)-G O 15: 12.0102 13( 12) L-x(2,3)-T-x(3)-G P 16: 11.5102 23( 12) G-x(0,1)-L-x(2,3)-E Q 17: 11.5102 19( 12) G-x(0,2)-L-x(2)-E R 18: 11.5102 24( 12) D-x(3,4)-L-x(1,2)-D S 19: 11.5102 29( 12) A-x(4,5)-S-x(0,1)-G T 20: 11.5102 25( 12) L-x(3,4)-G-x(0,1)-S Best patterns with alignements: fitness hits(seqs) Pattern A 1: 23.9146 12( 12) D-D-[CG]-W-x(3,4)-R-x-[ADGS]-[DENS] Occurences: 12(12) AGA1_PEDPE : 368- 378: emfvl DDGWfgh-RdDD nsslg AGA2_PEDPE : 360- 370: qmlvl DDGWfvn-RnGE ngqlg AGAL_ASPNG : 84- 95: nrinl DDCWmayqRsDN gslqw AGAL_CYATE : 98- 109: qyinl DDCWaelnRdSE gnmvp AGAL_HUMAN : 92- 103: eylci DDCWmapqRdSE grlqa AGAL_STRMU : 360- 370: elfvl DDGWfgh-RfDD nsslg MEL1_YEAST : 72- 82: kyiil DDCWssg-RdSD gflva MEL2_YEAST : 72- 82: kyiil DDCWssg-RdSD gflva MEL5_YEAST : 72- 82: kyvil DDCWssg-RdSD gflva MEL6_YEAST : 72- 82: kyvil DDCWssg-RdSD gflva NAGA_HUMAN : 78- 88: tylni DDCWigg-RdAS grlmp RAFA_ECOLI : 329- 339: erfii DDGWfkg-RnDD raalg B 2: 20.5920 12( 12) D-D-x-W-x(3,4)-R-x-[ADGS]-[DENS] Occurences: 12(12) AGA1_PEDPE : 368- 378: emfvl DDgWfgh-RdDD nsslg AGA2_PEDPE : 360- 370: qmlvl DDgWfvn-RnGE ngqlg AGAL_ASPNG : 84- 95: nrinl DDcWmayqRsDN gslqw AGAL_CYATE : 98- 109: qyinl DDcWaelnRdSE gnmvp AGAL_HUMAN : 92- 103: eylci DDcWmapqRdSE grlqa AGAL_STRMU : 360- 370: elfvl DDgWfgh-RfDD nsslg MEL1_YEAST : 72- 82: kyiil DDcWssg-RdSD gflva MEL2_YEAST : 72- 82: kyiil DDcWssg-RdSD gflva MEL5_YEAST : 72- 82: kyvil DDcWssg-RdSD gflva MEL6_YEAST : 72- 82: kyvil DDcWssg-RdSD gflva NAGA_HUMAN : 78- 88: tylni DDcWigg-RdAS grlmp RAFA_ECOLI : 329- 339: erfii DDgWfkg-RnDD raalg C 3: 19.7446 12( 12) D-[CG]-W-x(3,4)-R-x-[ADGS]-[DENS] Occurences: 12(12) AGA1_PEDPE : 369- 378: mfvld DGWfgh-RdDD nsslg AGA2_PEDPE : 361- 370: mlvld DGWfvn-RnGE ngqlg AGAL_ASPNG : 85- 95: rinld DCWmayqRsDN gslqw AGAL_CYATE : 99- 109: yinld DCWaelnRdSE gnmvp AGAL_HUMAN : 93- 103: ylcid DCWmapqRdSE grlqa AGAL_STRMU : 361- 370: lfvld DGWfgh-RfDD nsslg MEL1_YEAST : 73- 82: yiild DCWssg-RdSD gflva MEL2_YEAST : 73- 82: yiild DCWssg-RdSD gflva MEL5_YEAST : 73- 82: yvild DCWssg-RdSD gflva MEL6_YEAST : 73- 82: yvild DCWssg-RdSD gflva NAGA_HUMAN : 79- 88: ylnid DCWigg-RdAS grlmp RAFA_ECOLI : 330- 339: rfiid DGWfkg-RnDD raalg D 4: 18.3484 12( 12) D-x-[ILV]-K-x-D-x-[CN] Occurences: 12(12) AGA1_PEDPE : 475- 482: kskqi DyIKwDmN rhlsd AGA2_PEDPE : 467- 474: qnnql DyLKwDmN rhltq AGAL_ASPNG : 157- 164: aswgi DyLKlDgC nvyat AGAL_CYATE : 172- 179: aswgv DyLKyDnC enlgi AGAL_HUMAN : 165- 172: adwgv DlLKfDgC ycdsl AGAL_STRMU : 467- 474: tenti DyVKwDyN rnitn MEL1_YEAST : 144- 151: annrv DyLKyDnC ynkgq MEL2_YEAST : 144- 151: annrv DyLKyDnC ynkgq MEL5_YEAST : 144- 151: annrv DyLKyDnC ynkgq MEL6_YEAST : 144- 151: annrv DyLKyDnC ynkgq NAGA_HUMAN : 151- 158: aewkv DmLKlDgC fstpe RAFA_ECOLI : 436- 443: gehpv DyVKwDmN relvq E 5: 14.6352 13( 12) L-G-x(3,4)-D-x(4)-[APT] Occurences: 13(12) AGA1_PEDPE : 382- 393: ddnss LGdwqvDhrkfP qglnh AGA2_PEDPE : 374- 385: gengq LGdwfvDpikfP nglnp AGAL_ASPNG : 375- 386: ipvqw LGltetDctytA edlwd AGAL_CYATE : 137- 147: skglk LGvys-DagnqT cskrm AGAL_CYATE : 156- 167: rmpgs LGheeqDaktfA swgvd AGAL_HUMAN : 131- 141: skglk LGiya-DvgnkT cagfp AGAL_STRMU : 594- 604: ammgn LGyel-DlavlT knekk MEL1_YEAST : 128- 139: gypgs LGreeeDaqffA nnrvd MEL2_YEAST : 128- 139: gypgs LGreeeDaqffA nnrvd MEL5_YEAST : 128- 139: gypgs LGreeeDaqffA nnrvd MEL6_YEAST : 128- 139: gypgs LGreeeDaqffA nnrvd NAGA_HUMAN : 116- 126: slglk LGiya-DmgnfT cmgyp RAFA_ECOLI : 343- 354: ddraa LGdwytDeqkyP nglmp F 6: 14.4121 13( 12) G-x(3)-D-x-[ADEGT]-x-L Occurences: 13(12) AGA1_PEDPE : 604- 612: asgvl GyelDlTqL ssadk AGA2_PEDPE : 524- 532: ncsag GgrfDfGmL pytnq AGAL_ASPNG : 265- 273: ryqrp GyfnDpDfL ipdhp AGAL_CYATE : 257- 265: syagp GgwnDpDmL evgng AGAL_HUMAN : 260- 268: dvagp GgwnDpDmL vignf AGAL_STRMU : 595- 603: mmgnl GyelDlAvL tknek MEL1_YEAST : 256- 264: qnagv GgwnDlDnL evgvg MEL2_YEAST : 256- 264: qnagv GgwnDlDnL evrvg MEL5_YEAST : 256- 264: qnagv GgwnDlDnL evgvg MEL6_YEAST : 256- 264: qnagv GgwnDlDnL evgvg NAGA_HUMAN : 246- 254: pvagp GhwnDpDmL lignf RAFA_ECOLI : 335- 343: dgwfk GrndDrAaL gdwyt RAFA_ECOLI : 487- 495: scasg GgriDfEvL krthr G 7: 13.9293 18( 12) G-[AGIPV]-G-x(2,3)-D Occurences: 18(12) AGA1_PEDPE : 530- 536: fegcs GGGgrfD agmay AGA1_PEDPE : 531- 536: egcsg GGGrf-D agmay AGA2_PEDPE : 523- 528: encsa GGGrf-D fgmlp AGAL_ASPNG : 240- 246: ilvys GAGsawD simnn AGAL_CYATE : 255- 261: wasya GPGgwnD pdmle AGAL_HUMAN : 258- 264: ivdva GPGgwnD pdmlv AGAL_STRMU : 266- 271: nvvrl GIGin-D dnfsw AGAL_STRMU : 266- 272: nvvrl GIGindD nfswe AGAL_STRMU : 521- 527: fescs GGGgrnD lgmmc AGAL_STRMU : 522- 527: escsg GGGrn-D lgmmc MEL1_YEAST : 254- 260: mgqna GVGgwnD ldnle MEL1_YEAST : 267- 273: dnlev GVGnltD deeka MEL2_YEAST : 254- 260: mgqna GVGgwnD ldnle MEL5_YEAST : 254- 260: mgqna GVGgwnD ldnle MEL5_YEAST : 267- 273: dnlev GVGnltD deeka MEL6_YEAST : 254- 260: mgqna GVGgwnD ldnle MEL6_YEAST : 267- 273: dnlev GVGnltD deeka NAGA_HUMAN : 244- 250: lqpva GPGhwnD pdmll RAFA_ECOLI : 486- 491: escas GGGri-D fevlk H 8: 12.5102 14( 12) G-x(3)-D-x(3)-L Occurences: 14(12) AGA1_PEDPE : 604- 612: asgvl GyelDltqL ssadk AGA2_PEDPE : 524- 532: ncsag GgrfDfgmL pytnq AGAL_ASPNG : 265- 273: ryqrp GyfnDpdfL ipdhp AGAL_CYATE : 257- 265: syagp GgwnDpdmL evgng AGAL_CYATE : 372- 380: iglqq GttvDardL wehst AGAL_HUMAN : 260- 268: dvagp GgwnDpdmL vignf AGAL_STRMU : 595- 603: mmgnl GyelDlavL tknek MEL1_YEAST : 256- 264: qnagv GgwnDldnL evgvg MEL2_YEAST : 256- 264: qnagv GgwnDldnL evrvg MEL5_YEAST : 256- 264: qnagv GgwnDldnL evgvg MEL6_YEAST : 256- 264: qnagv GgwnDldnL evgvg NAGA_HUMAN : 246- 254: pvagp GhwnDpdmL lignf RAFA_ECOLI : 335- 343: dgwfk GrndDraaL gdwyt RAFA_ECOLI : 487- 495: scasg GgriDfevL krthr I 9: 12.0102 19( 12) A-x(3,4)-D-x-L Occurences: 19(12) AGA1_PEDPE : 699- 706: niatk AifggDeL mqlgf AGA2_PEDPE : 447- 453: ldlsq Aavr-DhL ittlt AGAL_ASPNG : 152- 159: dantf AswgiDyL kldgc AGAL_ASPNG : 229- 236: iygel ArhstDiL vysga AGAL_ASPNG : 323- 329: neali Avnq-DpL aqqat AGAL_ASPNG : 336- 342: qqatl Asrd-DtL diltr AGAL_CYATE : 167- 174: daktf AswgvDyL kydnc AGAL_CYATE : 315- 321: naevi Avnq-DkL gvqgk AGAL_HUMAN : 160- 167: daqtf AdwgvDlL kfdgc AGAL_HUMAN : 318- 324: dkdvi Ainq-DpL gkqgy AGAL_STRMU : 128- 135: saqsl AlileDdL aksri MEL1_YEAST : 139- 146: daqff AnnrvDyL kydnc MEL2_YEAST : 139- 146: daqff AnnrvDyL kydnc MEL5_YEAST : 139- 146: daqff AnnrvDyL kydnc MEL6_YEAST : 139- 146: daqff AnnrvDyL kydnc NAGA_HUMAN : 146- 153: daqtf AewkvDmL kldgc NAGA_HUMAN : 291- 297: lrtis Aqnm-DiL qnplm RAFA_ECOLI : 261- 268: tpwly AchsaDgL ngmsq RAFA_ECOLI : 503- 510: thrfw AsdnnDaL ercti J 10: 12.0102 19( 12) G-L-x(1,2)-L Occurences: 19(12) AGA1_PEDPE : 508- 512: hryvl GLyeL lerlt AGA2_PEDPE : 10- 14: ydpkt GLinL hndqi AGA2_PEDPE : 353- 357: hahql GLqmL vlddg AGA2_PEDPE : 387- 391: ikfpn GLnpL aqqah AGA2_PEDPE : 596- 599: cigql GLe-L npkql AGAL_ASPNG : 108- 112: tkfph GLpwL akyvk AGAL_CYATE : 86- 90: amvst GLaaL gyqyi AGAL_CYATE : 134- 137: yvhsk GLk-L gvysd AGAL_HUMAN : 128- 131: yvhsk GLk-L giyad AGAL_STRMU : 297- 301: tytdk GLtdL tqesh MEL1_YEAST : 25- 28: spsyn GLg-L tpqmg MEL2_YEAST : 25- 28: spsyn GLg-L tpqmg MEL5_YEAST : 25- 28: spsyn GLg-L tpqmg MEL6_YEAST : 25- 28: spsyn GLg-L tpqmg NAGA_HUMAN : 113- 116: yvhsl GLk-L giyad NAGA_HUMAN : 260- 263: lignf GLs-L eqsra RAFA_ECOLI : 109- 112: edsva GLr-L vselv RAFA_ECOLI : 550- 554: siafr GLtaL fghmg RAFA_ECOLI : 559- 562: lfghm GLe-L dpvaa K 11: 12.0102 25( 12) G-x(1,2)-G-x(3)-D Occurences: 25(12) AGA1_PEDPE : 370- 377: fvldd GwfGhrdD dnssl AGA1_PEDPE : 530- 536: fegcs Gg-GgrfD agmay AGA1_PEDPE : 601- 608: avaas GvlGyelD ltqls AGA2_PEDPE : 369- 376: fvnrn GenGqlgD wfvdp AGAL_ASPNG : 240- 246: ilvys Ga-GsawD simnn AGAL_CYATE : 255- 261: wasya Gp-GgwnD pdmle AGAL_HUMAN : 258- 264: ivdva Gp-GgwnD pdmlv AGAL_STRMU : 266- 272: nvvrl Gi-GindD nfswe AGAL_STRMU : 362- 369: fvldd GwfGhrfD dnssl AGAL_STRMU : 521- 527: fescs Gg-GgrnD lgmmc AGAL_STRMU : 592- 599: hvamm GnlGyelD lavlt MEL1_YEAST : 95- 101: qkfpn Gm-GhvaD hlhnn MEL1_YEAST : 254- 260: mgqna Gv-GgwnD ldnle MEL1_YEAST : 267- 273: dnlev Gv-GnltD deeka MEL2_YEAST : 95- 101: qkfpn Gm-GhvaD hlhnn MEL2_YEAST : 254- 260: mgqna Gv-GgwnD ldnle MEL5_YEAST : 95- 101: hkfpn Gm-GhvaD hlhnn MEL5_YEAST : 254- 260: mgqna Gv-GgwnD ldnle MEL5_YEAST : 267- 273: dnlev Gv-GnltD deeka MEL6_YEAST : 95- 101: hkfpn Gm-GhvaD hlhnn MEL6_YEAST : 254- 260: mgqna Gv-GgwnD ldnle MEL6_YEAST : 267- 273: dnlev Gv-GnltD deeka NAGA_HUMAN : 129- 136: nftcm GypGttlD kvvqd NAGA_HUMAN : 244- 250: lqpva Gp-GhwnD pdmll RAFA_ECOLI : 556- 563: ltalf GhmGlelD pvaad L 12: 12.0102 22( 12) G-x(0,1)-G-x(3)-D Occurences: 22(12) AGA1_PEDPE : 530- 536: fegcs GgGgrfD agmay AGA1_PEDPE : 531- 536: egcsg G-GgrfD agmay AGA2_PEDPE : 523- 528: encsa G-GgrfD fgmlp AGAL_ASPNG : 240- 246: ilvys GaGsawD simnn AGAL_CYATE : 255- 261: wasya GpGgwnD pdmle AGAL_HUMAN : 258- 264: ivdva GpGgwnD pdmlv AGAL_STRMU : 266- 272: nvvrl GiGindD nfswe AGAL_STRMU : 521- 527: fescs GgGgrnD lgmmc AGAL_STRMU : 522- 527: escsg G-GgrnD lgmmc MEL1_YEAST : 95- 101: qkfpn GmGhvaD hlhnn MEL1_YEAST : 254- 260: mgqna GvGgwnD ldnle MEL1_YEAST : 267- 273: dnlev GvGnltD deeka MEL2_YEAST : 95- 101: qkfpn GmGhvaD hlhnn MEL2_YEAST : 254- 260: mgqna GvGgwnD ldnle MEL5_YEAST : 95- 101: hkfpn GmGhvaD hlhnn MEL5_YEAST : 254- 260: mgqna GvGgwnD ldnle MEL5_YEAST : 267- 273: dnlev GvGnltD deeka MEL6_YEAST : 95- 101: hkfpn GmGhvaD hlhnn MEL6_YEAST : 254- 260: mgqna GvGgwnD ldnle MEL6_YEAST : 267- 273: dnlev GvGnltD deeka NAGA_HUMAN : 244- 250: lqpva GpGhwnD pdmll RAFA_ECOLI : 486- 491: escas G-GgriD fevlk M 13: 12.0102 13( 12) G-x(1,2)-L-x(2)-E Occurences: 13(12) AGA1_PEDPE : 411- 417: qglkf GiwLepE misyd AGA1_PEDPE : 601- 606: avaas Gv-LgyE ldltq AGA2_PEDPE : 593- 598: qlaci Gq-LglE lnpkq AGAL_ASPNG : 171- 177: vyatq GrtLeeE ykqry AGAL_CYATE : 154- 159: skrmp Gs-LghE eqdak AGAL_HUMAN : 43- 48: rtptm Gw-LhwE rfmcn AGAL_STRMU : 592- 597: hvamm Gn-LgyE ldlav MEL1_YEAST : 126- 131: cagyp Gs-LgrE eedaq MEL2_YEAST : 126- 131: cagyp Gs-LgrE eedaq MEL5_YEAST : 126- 131: cagyp Gs-LgrE eedaq MEL6_YEAST : 126- 131: cagyp Gs-LgrE eedaq NAGA_HUMAN : 29- 34: qtppm Gw-LawE rfrcn RAFA_ECOLI : 109- 115: edsva GlrLvsE lvmtp N 14: 12.0102 13( 12) L-x(2)-T-x(2,3)-G Occurences: 13(12) AGA1_PEDPE : 678- 685: yaqps LtkTklvG lnpkl AGA2_PEDPE : 240- 246: pntte LagTvi-G calaw AGA2_PEDPE : 295- 301: tpeav LtwTnt-G fngms AGAL_ASPNG : 38- 45: ieqps LlpTppmG fnnwa AGAL_CYATE : 52- 59: laeng LgqTppmG wnswn AGAL_HUMAN : 36- 43: aldng LarTptmG wlhwe AGAL_STRMU : 558- 565: ygssy LypTismG ahvsa MEL1_YEAST : 26- 33: psyng LglTpqmG wdnwn MEL2_YEAST : 26- 33: psyng LglTpqmG wdnwn MEL5_YEAST : 26- 33: psyng LglTpqmG wdswn MEL6_YEAST : 26- 33: psyng LglTpqmG wdnwn NAGA_HUMAN : 22- 29: mldng LlqTppmG wlawe RAFA_ECOLI : 116- 122: rlvse LvmTps-G ilkvr O 15: 12.0102 13( 12) L-x(2,3)-T-x(3)-G Occurences: 13(12) AGA1_PEDPE : 678- 685: yaqps Ltk-TklvG lnpkl AGA2_PEDPE : 73- 81: vtslp LeysTigsG dyrqp AGAL_ASPNG : 38- 45: ieqps Llp-TppmG fnnwa AGAL_CYATE : 52- 59: laeng Lgq-TppmG wnswn AGAL_HUMAN : 36- 43: aldng Lar-TptmG wlhwe AGAL_STRMU : 558- 565: ygssy Lyp-TismG ahvsa MEL1_YEAST : 26- 33: psyng Lgl-TpqmG wdnwn MEL2_YEAST : 26- 33: psyng Lgl-TpqmG wdnwn MEL5_YEAST : 7- 15: fafyf LtacTtlkG vfgvs MEL5_YEAST : 26- 33: psyng Lgl-TpqmG wdswn MEL6_YEAST : 26- 33: psyng Lgl-TpqmG wdnwn NAGA_HUMAN : 22- 29: mldng Llq-TppmG wlawe RAFA_ECOLI : 510- 518: dnnda LercTiqrG msyff P 16: 11.5102 23( 12) G-x(0,1)-L-x(2,3)-E Occurences: 23(12) AGA1_PEDPE : 601- 606: avaas GvLgy-E ldltq AGA2_PEDPE : 403- 407: hrmkf G-Lwv-E pemit AGA2_PEDPE : 593- 598: qlaci GqLgl-E lnpkq AGAL_ASPNG : 279- 284: ipdhp G-LtadE krshf AGAL_CYATE : 154- 159: skrmp GsLgh-E eqdak AGAL_CYATE : 154- 160: skrmp GsLgheE qdakt AGAL_HUMAN : 43- 48: rtptm GwLhw-E rfmcn AGAL_STRMU : 344- 348: rsqll G-Lad-E arklg AGAL_STRMU : 403- 407: rglqf G-Lwf-E pemvs AGAL_STRMU : 592- 597: hvamm GnLgy-E ldlav MEL1_YEAST : 83- 89: grdsd GfLvadE qkfpn MEL1_YEAST : 126- 131: cagyp GsLgr-E eedaq MEL1_YEAST : 126- 132: cagyp GsLgreE edaqf MEL1_YEAST : 269- 275: levgv GnLtddE ekahf MEL2_YEAST : 83- 89: grdsd GfLvadE qkfpn MEL2_YEAST : 126- 131: cagyp GsLgr-E eedaq MEL2_YEAST : 126- 132: cagyp GsLgreE edaqf MEL2_YEAST : 269- 275: levrv GnLtddE ekahf MEL5_YEAST : 126- 131: cagyp GsLgr-E eedaq MEL5_YEAST : 126- 132: cagyp GsLgreE edaqf MEL5_YEAST : 269- 275: levgv GnLtddE ekahf MEL6_YEAST : 126- 131: cagyp GsLgr-E eedaq MEL6_YEAST : 126- 132: cagyp GsLgreE edaqf MEL6_YEAST : 269- 275: levgv GnLtddE ekahf NAGA_HUMAN : 29- 34: qtppm GwLaw-E rfrcn NAGA_HUMAN : 260- 264: lignf G-Lsl-E qsraq NAGA_HUMAN : 379- 383: gdiis G-Lrd-E tnftv RAFA_ECOLI : 639- 643: ilrfp G-Laa-E vryrl Q 17: 11.5102 19( 12) G-x(0,2)-L-x(2)-E Occurences: 19(12) AGA1_PEDPE : 411- 417: qglkf GiwLepE misyd AGA1_PEDPE : 601- 606: avaas Gv-LgyE ldltq AGA2_PEDPE : 403- 407: hrmkf G--LwvE pemit AGA2_PEDPE : 593- 598: qlaci Gq-LglE lnpkq AGAL_ASPNG : 171- 177: vyatq GrtLeeE ykqry AGAL_CYATE : 154- 159: skrmp Gs-LghE eqdak AGAL_HUMAN : 43- 48: rtptm Gw-LhwE rfmcn AGAL_STRMU : 344- 348: rsqll G--LadE arklg AGAL_STRMU : 403- 407: rglqf G--LwfE pemvs AGAL_STRMU : 592- 597: hvamm Gn-LgyE ldlav MEL1_YEAST : 126- 131: cagyp Gs-LgrE eedaq MEL2_YEAST : 126- 131: cagyp Gs-LgrE eedaq MEL5_YEAST : 126- 131: cagyp Gs-LgrE eedaq MEL6_YEAST : 126- 131: cagyp Gs-LgrE eedaq NAGA_HUMAN : 29- 34: qtppm Gw-LawE rfrcn NAGA_HUMAN : 260- 264: lignf G--LslE qsraq NAGA_HUMAN : 379- 383: gdiis G--LrdE tnftv RAFA_ECOLI : 109- 115: edsva GlrLvsE lvmtp RAFA_ECOLI : 639- 643: ilrfp G--LaaE vryrl R 18: 11.5102 24( 12) D-x(3,4)-L-x(1,2)-D Occurences: 24(12) AGA1_PEDPE : 377- 384: fghrd DdnssLg-D wqvdh AGA1_PEDPE : 378- 384: ghrdd Dnss-Lg-D wqvdh AGA1_PEDPE : 480- 487: dyikw DmnrhLs-D iysva AGA2_PEDPE : 137- 145: vihlt DavtkLqmD lnyti AGAL_ASPNG : 269- 276: pgyfn Dpdf-LipD hpglt AGAL_ASPNG : 276- 283: dflip Dhpg-LtaD ekrsh AGAL_CYATE : 99- 107: yinld DcwaeLnrD segnm AGAL_HUMAN : 101- 109: mapqr DsegrLqaD pqrfp AGAL_HUMAN : 175- 182: dgcyc DslenLa-D gykhm AGAL_STRMU : 369- 376: fghrf DdnssLg-D wfvne AGAL_STRMU : 370- 376: ghrfd Dnss-Lg-D wfvne MEL1_YEAST : 43- 51: ntfac DvseqLllD tadri MEL1_YEAST : 80- 88: wssgr DsdgfLvaD eqkfp MEL2_YEAST : 43- 51: ntfac DvseqLllD tadri MEL2_YEAST : 80- 88: wssgr DsdgfLvaD eqkfp MEL5_YEAST : 43- 51: ntfac DvseqLllD tadri MEL5_YEAST : 80- 88: wssgr DsdgfLvaD khkfp MEL6_YEAST : 43- 51: ntfac DvseqLllD tadri MEL6_YEAST : 80- 88: wssgr DsdgfLvaD khkfp NAGA_HUMAN : 86- 94: wiggr DasgrLmpD pkrfp NAGA_HUMAN : 375- 382: dvysg DiisgLr-D etnft RAFA_ECOLI : 338- 345: fkgrn DdraaLg-D wytde RAFA_ECOLI : 339- 345: kgrnd Draa-Lg-D wytde RAFA_ECOLI : 385- 392: inpds Dlfr-LhpD wilsm S 19: 11.5102 29( 12) A-x(4,5)-S-x(0,1)-G Occurences: 29(12) AGA1_PEDPE : 113- 120: gyrie AgkpklS-G lpaaf AGA2_PEDPE : 681- 687: ldael Aysds-S-G nrytg AGAL_ASPNG : 148- 155: heeqd Antfa-SwG idylk AGAL_ASPNG : 489- 497: lvklq AcdstdSdG qkwty AGAL_CYATE : 79- 86: vvret Adamv-StG laalg AGAL_CYATE : 102- 110: lddcw AelnrdSeG nmvpn AGAL_CYATE : 116- 122: nmvpn Aaafp-S-G ikala AGAL_CYATE : 127- 134: gikal Adyvh-SkG lklgv AGAL_CYATE : 163- 170: heeqd Aktfa-SwG vdylk AGAL_HUMAN : 73- 80: lfmem Aelmv-SeG wkdag AGAL_HUMAN : 97- 104: ddcwm Apqrd-SeG rlqad AGAL_HUMAN : 121- 128: girql Anyvh-SkG lklgi AGAL_HUMAN : 143- 150: gnktc Agfpg-SfG yydid AGAL_STRMU : 242- 249: ygeal AlqliyS-G nfqaf MEL1_YEAST : 122- 129: geytc Agypg-SlG reeed MEL1_YEAST : 201- 208: wgsgi AnswrmS-G dvtae MEL1_YEAST : 314- 321: qasvi Ainqd-SnG ipatr MEL2_YEAST : 122- 129: geytc Agypg-SlG reeed MEL2_YEAST : 201- 208: wgsgi AnswrmS-G ditae MEL5_YEAST : 122- 129: geytc Agypg-SlG reeed MEL5_YEAST : 201- 208: wgsgi AnswrmS-G ditae MEL6_YEAST : 122- 129: geytc Agypg-SlG reeed MEL6_YEAST : 201- 208: wgsgi AnswrmS-G ditae NAGA_HUMAN : 106- 113: gipfl Adyvh-SlG lklgi NAGA_HUMAN : 368- 374: sviye Aqdvy-S-G diisg RAFA_ECOLI : 65- 73: liaen AlglfsSpG leghr RAFA_ECOLI : 212- 219: qgevw AvhlgwS-G nhrmr RAFA_ECOLI : 566- 574: eldpv AadakeSdG yrrya RAFA_ECOLI : 567- 574: ldpva Adake-SdG yrrya T 20: 11.5102 25( 12) L-x(3,4)-G-x(0,1)-S Occurences: 25(12) AGA1_PEDPE : 433- 440: qhpdy LmqvpGrS pspsr AGA1_PEDPE : 558- 565: davar LtiqyGtS laypi AGA2_PEDPE : 101- 107: qllpi Leyt-GfS vndqp AGA2_PEDPE : 477- 482: dmnrh Ltqv-G-S thlpa AGAL_ASPNG : 415- 422: tavfr LslpqGcS svvpt AGAL_CYATE : 16- 22: miivv LlmiiG-S eggrl AGAL_CYATE : 17- 22: iivvl Lmii-G-S eggrl AGAL_HUMAN : 191- 197: hmsla Lnrt-GrS ivysc AGAL_STRMU : 208- 213: qieqg Lfki-G-S nrgas AGAL_STRMU : 549- 555: daiar LpiqyG-S sylyp AGAL_STRMU : 549- 556: daiar LpiqyGsS ylypt MEL1_YEAST : 13- 20: tacis LkgvfGvS psyng MEL1_YEAST : 192- 198: nwgqd LtfywG-S gians MEL1_YEAST : 359- 364: dqvva Llng-G-S vsrpm MEL2_YEAST : 13- 20: tacis LkgvfGvS psyng MEL2_YEAST : 192- 198: nwgqd LtfywG-S gians MEL2_YEAST : 359- 364: dqvva Llng-G-S vprpm MEL5_YEAST : 13- 20: tactt LkgvfGvS psyng MEL5_YEAST : 192- 198: nwgqd LtfywG-S gians MEL5_YEAST : 359- 364: dqvva Llng-G-S varpm MEL6_YEAST : 13- 20: tacis LkgvfGvS psyng MEL6_YEAST : 192- 198: nwgqd LtfywG-S gians MEL6_YEAST : 359- 364: dqvva Llng-G-S varpm NAGA_HUMAN : 255- 262: dpdml LignfGlS leqsr NAGA_HUMAN : 358- 363: sslgq Lnft-G-S viyea RAFA_ECOLI : 395- 401: hpdwi Lsmp-GyS qptgr Number of patterns evaluated by Pratt:7779 Total running time: 10 seconds