------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file ALDOLASE_KDPG_KHG_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ALDOLASE_KDPG_KHG_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ALKD_PSEPU 225 ALKH_ECOLI 213 ALKH_ERWCH 213 ALKH_HAEIN 212 ALKH_ZYMMO 205 Pratt run started at Thu Feb 6 18:35:15 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 29.1904 5( 5) K-x-F-P-A-E-x(2)-G-G 2: 28.1904 8( 5) F-x(0,2)-F-P-A-E-x(2)-G-G 3: 28.1904 5( 5) P-x(2,3)-A-L-x(1,2)-A-x(5)-L-x(2)-T-L 4: 27.6904 8( 5) F-x(0,2)-F-x(0,1)-P-A-E-x(2)-G-G 5: 25.0203 5( 5) F-P-A-E-x(2)-G-G 6: 24.5203 5( 5) A-L-x(1,2)-A-x(5)-L-x(2)-T-L 7: 24.0203 5( 5) A-x(4,5)-A-x(0,1)-G-G-x(4)-E-x(2)-L 8: 23.5203 9( 5) A-x(0,2)-L-x(1,2)-A-x(5)-L-x(2)-T-L 9: 20.8503 5( 5) P-A-E-x(2)-G-G 10: 20.8503 5( 5) P-x(5)-A-G-T-V 11: 20.3503 6( 5) A-x(0,1)-G-G-x(4)-E-x(2)-L 12: 19.8503 6( 5) A-x(3,5)-G-x(2)-F-x(3)-P-G 13: 19.8503 5( 5) L-x(1,2)-A-G-x(5)-E-x(2,3)-L 14: 19.8503 5( 5) P-x-A-x(1,3)-A-L-x(2)-G 15: 19.3503 5( 5) K-x(3,4)-E-x(2)-G-x-V-x(2,4)-A 16: 19.3503 5( 5) V-x(3)-T-x(1,3)-R-x(3)-A-x(2,3)-A 17: 19.3503 5( 5) A-x-A-x(0,2)-L-x(1,2)-A-x(5)-L 18: 19.3503 5( 5) A-x(2)-L-x(1,2)-A-x(5)-L-x(2,4)-T 19: 19.3503 5( 5) A-x(2,3)-L-x-A-x(5)-L-x(2,4)-T 20: 18.8503 5( 5) E-x(2)-G-x-V-x(2,4)-A-x(0,2)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 121.9527 5( 5) K-[FL]-F-P-A-E-x(2)-G-G-[LV]-x(2)-[IL]-x-[AS]-[FILM]-[AGL]-[GS]-[PV]-[FY]-x(2)-[ILV]-[QR]-[FI]-x-P-T-G-G-[IV]-[GNST]-[LP]-x-[NS]-x(3)-Y-[LM]-[AE]-x(2)-[NS]-[IV]-[LMV]-[AC]-x-G B 2: 120.8955 5( 5) F-P-A-E-x(2)-G-G-[LV]-x(2)-[IL]-x-[AS]-[FILM]-[AGL]-[GS]-[PV]-[FY]-x(2)-[ILV]-[QR]-[FI]-x-P-T-G-G-[IV]-[GNST]-[LP]-x-[NS]-x(3)-Y-[LM]-[AE]-x(2)-[NS]-[IV]-[LMV]-[AC]-x-G-[GT]-[GS] C 3: 120.8955 5( 5) P-A-E-x(2)-G-G-[LV]-x(2)-[IL]-x-[AS]-[FILM]-[AGL]-[GS]-[PV]-[FY]-x(2)-[ILV]-[QR]-[FI]-x-P-T-G-G-[IV]-[GNST]-[LP]-x-[NS]-x(3)-Y-[LM]-[AE]-x(2)-[NS]-[IV]-[LMV]-[AC]-x-G-[GT]-[GS]-W D 4: 113.5146 8( 5) F-x(0,2)-F-P-A-E-x(2)-G-G-[LV]-x(2)-[IL]-x-[AS]-[FILM]-[AGL]-[GS]-[PV]-[FY]-x(2)-[ILV]-[QR]-[FI]-x-P-T-G-G-[IV]-[GNST]-[LP]-x-[NS]-x(3)-Y-[LM]-[AE]-x(2)-[NS]-[IV]-[LMV]-[AC] E 5: 113.0146 8( 5) F-x(0,2)-F-x(0,1)-P-A-E-x(2)-G-G-[LV]-x(2)-[IL]-x-[AS]-[FILM]-[AGL]-[GS]-[PV]-[FY]-x(2)-[ILV]-[QR]-[FI]-x-P-T-G-G-[IV]-[GNST]-[LP]-x-[NS]-x(3)-Y-[LM]-[AE]-x(2)-[NS]-[IV]-[LMV]-[AC] F 6: 111.5241 5( 5) P-[DEG]-x(2)-[IV]-[AG]-A-G-T-V-x-[DNT]-x(3)-[FLV]-[ADV]-x-[AV]-x-[AES]-[AS]-G-[AC]-[DEQ]-F-x-[IV]-[ST]-P-G-[IL]-[NT]-x(2)-[IL]-[GLV]-[EK]-x-[ACG]-x-[ADE]-x(3)-[AP]-[IL]-x-P-G G 7: 97.8046 6( 5) A-x(3,5)-G-[AC]-[DEQ]-F-x-[IV]-[ST]-P-G-[IL]-[NT]-x(2)-[IL]-[GLV]-[EK]-x-[ACG]-x-[ADE]-x(3)-[AP]-[IL]-x-P-G-[IV]-[ANS]-[NT]-[APV]-x-[ADE]-[ILV]-x-[ILM]-[AG]-x-[ADE]-x-G H 8: 87.8962 5( 5) P-[ILM]-A-x(1,3)-A-L-x(2)-G-[GI]-x(2)-[TV]-x(2)-[FLV]-[PT]-[AL]-[ER]-[AST]-[EPQS]-x-[AG]-[LV]-[DEK]-x-I-x-[AILV]-[ILM]-x(4)-[AGP]-[ADEQ]-[ALV]-x-[GIV]-x-[AGP]-[GT]-[GTV]-[GLV]-x-[ADGN] I 9: 78.1919 5( 5) E-[AIV]-[NPS]-G-[AG]-V-x(2,4)-A-x(0,2)-G-[GPT]-x(3)-[AILV]-x-[FIM]-x-[DP]-[QT]-[AG]-[GQ]-x-[AGNS]-[GLP]-x-[EN]-x(2)-[DNV]-x(2)-[AG]-[IL]-x-[ANS]-x-[LMV]-[ACG]-x(2)-[AGT]-[GSV] J 10: 78.0732 5( 5) K-x(3,4)-E-[AIV]-[NPS]-G-[AG]-V-x(2,4)-A-x(2)-[GV]-[LP]-x-[AGS]-x-[ILMV]-x(3)-[AP]-[QT]-[EG]-[AG]-[GIV]-[CGNS]-x(4)-[RS]-[DNP]-x-[LM]-[AT]-[AIL]-x(2)-[GIV]-x(3)-[GV] K 11: 67.6181 5( 5) P-x(2,3)-A-L-x(1,2)-A-[DG]-[DG]-[ILV]-x-[PTV]-L-[AE]-x-T-L-x(2)-[ENPQ]-x-[AGL]-x(2)-A-x(3)-[FILM]-x(4)-[AGP]-[ADE]-x(2)-[GIV]-x-[AGL]-x(2)-[ALV] L 12: 63.9481 5( 5) A-L-x(1,2)-A-[DG]-[DG]-[ILV]-x-[PTV]-L-[AE]-x-T-L-x(2)-[ENPQ]-x-[AGL]-x(2)-A-x(3)-[FILM]-x(4)-[AGP]-[ADE]-x(2)-[GIV]-x-[AGL]-x(2)-[ALV] M 13: 62.9481 9( 5) A-x(0,2)-L-x(1,2)-A-[DG]-[DG]-[ILV]-x-[PTV]-L-[AE]-x-T-L-x(2)-[ENPQ]-x-[AGL]-x(2)-A-x(3)-[FILM]-x(4)-[AGP]-[ADE]-x(2)-[GIV]-x-[AGL]-x(2)-[ALV] N 14: 55.1788 5( 5) A-x(4,5)-A-x(0,1)-G-G-x(3)-[LV]-E-x(2)-L-x-[QST]-[EPQS]-x-[AGN]-x-[DEK]-[AE]-I-x(2)-[ILM]-x(4)-[GIP]-[ADE]-[AILV] O 15: 53.4532 5( 5) A-[DEK]-A-x(0,2)-L-x(1,2)-A-[GN]-x-[ILPV]-[DNR]-x-L-x-[ALV]-[AT]-[GL]-x-[STV]-x(2)-[AG]-x(2)-[AV]-[IV]-x-[AILV] P 16: 51.5088 6( 5) A-x(0,1)-G-G-x(3)-[LV]-E-x(2)-L-x-[QST]-[EPQS]-x-[AGN]-x-[DEK]-[AE]-I-x(2)-[ILM]-x(4)-[GIP]-[ADE]-[AILV] Q 17: 46.1240 5( 5) A-x(2)-L-x(1,2)-A-[GN]-x-[ILPV]-[DNR]-x-L-x(2,4)-T-[LV]-x-[ST]-x(2)-[AGQ]-[LV]-x-[AL]-[AI] R 18: 46.1240 5( 5) A-x(2,3)-L-x-A-[GN]-x-[ILPV]-[DNR]-x-L-x(2,4)-T-[LV]-x-[ST]-x(2)-[AGQ]-[LV]-x-[AL]-[AI] S 19: 45.8811 5( 5) L-x(1,2)-A-G-[GT]-[ILV]-x-[TV]-[AL]-E-x(2,3)-L-x(2)-[EPQS]-x-[AG]-[ALV]-[DEK]-x-[IV] T 20: 36.5436 5( 5) V-[AGL]-[AE]-[GILV]-T-x(1,3)-R-[ST]-x(2)-A-x(2,3)-A-[AI]-x-[AIL] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 121.9527 5( 5) K-[FL]-F-P-A-E-x(2)-G-G-[LV]-x(2)-[IL]-x-[AS]-[FILM]-[AGL]-[GS]-[PV]-[FY]-x(2)-[ILV]-[QR]-[FI]-x-P-T-G-G-[IV]-[GNST]-[LP]-x-[NS]-x(3)-Y-[LM]-[AE]-x(2)-[NS]-[IV]-[LMV]-[AC]-x-G Occurences: 5(5) ALKD_PSEPU : 144- 193: gyrrf KLFPAEisGGVaaIkAFGGPFgdIRFcPTGGVNPaNvrnYMAlpNVMCvG tgwml ALKH_ECOLI : 133- 182: glkef KFFPAEanGGVkaLqAIAGPFsqVRFcPTGGISPaNyrdYLAlkSVLCiG gswlv ALKH_ERWCH : 133- 182: glref KFFPAEanGGVkaLqAIAGPFgkIRFcPTGGISLkNyrdYLAlkSVLCvG gswlv ALKH_HAEIN : 133- 182: gisav KFFPAEasGGVkmIkALLGPYaqLQImPTGGIGLhNirdYLAipNIVAcG gswfv ALKH_ZYMMO : 125- 174: gldrf KFFPAEniGGLpaLkSMASVFrqVRFcPTGGITPtSapkYLEnpSILCvG gswvv B 2: 120.8955 5( 5) F-P-A-E-x(2)-G-G-[LV]-x(2)-[IL]-x-[AS]-[FILM]-[AGL]-[GS]-[PV]-[FY]-x(2)-[ILV]-[QR]-[FI]-x-P-T-G-G-[IV]-[GNST]-[LP]-x-[NS]-x(3)-Y-[LM]-[AE]-x(2)-[NS]-[IV]-[LMV]-[AC]-x-G-[GT]-[GS] Occurences: 5(5) ALKD_PSEPU : 146- 195: rrfkl FPAEisGGVaaIkAFGGPFgdIRFcPTGGVNPaNvrnYMAlpNVMCvGTG wmlds ALKH_ECOLI : 135- 184: kefkf FPAEanGGVkaLqAIAGPFsqVRFcPTGGISPaNyrdYLAlkSVLCiGGS wlvpa ALKH_ERWCH : 135- 184: refkf FPAEanGGVkaLqAIAGPFgkIRFcPTGGISLkNyrdYLAlkSVLCvGGS wlvpa ALKH_HAEIN : 135- 184: savkf FPAEasGGVkmIkALLGPYaqLQImPTGGIGLhNirdYLAipNIVAcGGS wfvek ALKH_ZYMMO : 127- 176: drfkf FPAEniGGLpaLkSMASVFrqVRFcPTGGITPtSapkYLEnpSILCvGGS wvvpa C 3: 120.8955 5( 5) P-A-E-x(2)-G-G-[LV]-x(2)-[IL]-x-[AS]-[FILM]-[AGL]-[GS]-[PV]-[FY]-x(2)-[ILV]-[QR]-[FI]-x-P-T-G-G-[IV]-[GNST]-[LP]-x-[NS]-x(3)-Y-[LM]-[AE]-x(2)-[NS]-[IV]-[LMV]-[AC]-x-G-[GT]-[GS]-W Occurences: 5(5) ALKD_PSEPU : 147- 196: rfklf PAEisGGVaaIkAFGGPFgdIRFcPTGGVNPaNvrnYMAlpNVMCvGTGW mldss ALKH_ECOLI : 136- 185: efkff PAEanGGVkaLqAIAGPFsqVRFcPTGGISPaNyrdYLAlkSVLCiGGSW lvpad ALKH_ERWCH : 136- 185: efkff PAEanGGVkaLqAIAGPFgkIRFcPTGGISLkNyrdYLAlkSVLCvGGSW lvpad ALKH_HAEIN : 136- 185: avkff PAEasGGVkmIkALLGPYaqLQImPTGGIGLhNirdYLAipNIVAcGGSW fvekk ALKH_ZYMMO : 128- 177: rfkff PAEniGGLpaLkSMASVFrqVRFcPTGGITPtSapkYLEnpSILCvGGSW vvpag D 4: 113.5146 8( 5) F-x(0,2)-F-P-A-E-x(2)-G-G-[LV]-x(2)-[IL]-x-[AS]-[FILM]-[AGL]-[GS]-[PV]-[FY]-x(2)-[ILV]-[QR]-[FI]-x-P-T-G-G-[IV]-[GNST]-[LP]-x-[NS]-x(3)-Y-[LM]-[AE]-x(2)-[NS]-[IV]-[LMV]-[AC] Occurences: 8(5) ALKD_PSEPU : 143- 191: lgyrr FklFPAEisGGVaaIkAFGGPFgdIRFcPTGGVNPaNvrnYMAlpNVMC vgtgw ALKH_ECOLI : 132- 180: yglke FkfFPAEanGGVkaLqAIAGPFsqVRFcPTGGISPaNyrdYLAlkSVLC iggsw ALKH_ECOLI : 134- 180: lkefk F--FPAEanGGVkaLqAIAGPFsqVRFcPTGGISPaNyrdYLAlkSVLC iggsw ALKH_ERWCH : 132- 180: yglre FkfFPAEanGGVkaLqAIAGPFgkIRFcPTGGISLkNyrdYLAlkSVLC vggsw ALKH_ERWCH : 134- 180: lrefk F--FPAEanGGVkaLqAIAGPFgkIRFcPTGGISLkNyrdYLAlkSVLC vggsw ALKH_HAEIN : 134- 180: isavk F--FPAEasGGVkmIkALLGPYaqLQImPTGGIGLhNirdYLAipNIVA cggsw ALKH_ZYMMO : 124- 172: lgldr FkfFPAEniGGLpaLkSMASVFrqVRFcPTGGITPtSapkYLEnpSILC vggsw ALKH_ZYMMO : 126- 172: ldrfk F--FPAEniGGLpaLkSMASVFrqVRFcPTGGITPtSapkYLEnpSILC vggsw E 5: 113.0146 8( 5) F-x(0,2)-F-x(0,1)-P-A-E-x(2)-G-G-[LV]-x(2)-[IL]-x-[AS]-[FILM]-[AGL]-[GS]-[PV]-[FY]-x(2)-[ILV]-[QR]-[FI]-x-P-T-G-G-[IV]-[GNST]-[LP]-x-[NS]-x(3)-Y-[LM]-[AE]-x(2)-[NS]-[IV]-[LMV]-[AC] Occurences: 8(5) ALKD_PSEPU : 143- 191: lgyrr FklF-PAEisGGVaaIkAFGGPFgdIRFcPTGGVNPaNvrnYMAlpNVMC vgtgw ALKH_ECOLI : 132- 180: yglke FkfF-PAEanGGVkaLqAIAGPFsqVRFcPTGGISPaNyrdYLAlkSVLC iggsw ALKH_ECOLI : 132- 180: yglke Fk-FfPAEanGGVkaLqAIAGPFsqVRFcPTGGISPaNyrdYLAlkSVLC iggsw ALKH_ECOLI : 134- 180: lkefk F--F-PAEanGGVkaLqAIAGPFsqVRFcPTGGISPaNyrdYLAlkSVLC iggsw ALKH_ERWCH : 132- 180: yglre FkfF-PAEanGGVkaLqAIAGPFgkIRFcPTGGISLkNyrdYLAlkSVLC vggsw ALKH_ERWCH : 132- 180: yglre Fk-FfPAEanGGVkaLqAIAGPFgkIRFcPTGGISLkNyrdYLAlkSVLC vggsw ALKH_ERWCH : 134- 180: lrefk F--F-PAEanGGVkaLqAIAGPFgkIRFcPTGGISLkNyrdYLAlkSVLC vggsw ALKH_HAEIN : 134- 180: isavk F--F-PAEasGGVkmIkALLGPYaqLQImPTGGIGLhNirdYLAipNIVA cggsw ALKH_ZYMMO : 124- 172: lgldr FkfF-PAEniGGLpaLkSMASVFrqVRFcPTGGITPtSapkYLEnpSILC vggsw ALKH_ZYMMO : 124- 172: lgldr Fk-FfPAEniGGLpaLkSMASVFrqVRFcPTGGITPtSapkYLEnpSILC vggsw ALKH_ZYMMO : 126- 172: ldrfk F--F-PAEniGGLpaLkSMASVFrqVRFcPTGGITPtSapkYLEnpSILC vggsw F 6: 111.5241 5( 5) P-[DEG]-x(2)-[IV]-[AG]-A-G-T-V-x-[DNT]-x(3)-[FLV]-[ADV]-x-[AV]-x-[AES]-[AS]-G-[AC]-[DEQ]-F-x-[IV]-[ST]-P-G-[IL]-[NT]-x(2)-[IL]-[GLV]-[EK]-x-[ACG]-x-[ADE]-x(3)-[AP]-[IL]-x-P-G Occurences: 5(5) ALKD_PSEPU : 76- 125: lreqr PElcVGAGTVlDrsmFAaVeAAGAQFvVTPGITedILEaGvDseiPLlPG istps ALKH_ECOLI : 65- 114: iakev PEaiVGAGTVlNpqqLAeVtEAGAQFaISPGLTepLLKaAtEgtiPLiPG istvs ALKH_ERWCH : 65- 114: iaqev PDaiVGAGTVtNpqqLAeVtAAGAQFaISPGLTepLLKaAtEgtiPLiPG istvs ALKH_HAEIN : 65- 114: lranr PDflIAAGTVlTaeqVVlAkSSGADFvVTPGLNpkIVKlCqDlnfPItPG vnnpm ALKH_ZYMMO : 57- 106: imkev PGavVGAGTVlNakmLDqAqEAGCEFfVSPGLTadLGKhAvAqkaALlPG vanaa G 7: 97.8046 6( 5) A-x(3,5)-G-[AC]-[DEQ]-F-x-[IV]-[ST]-P-G-[IL]-[NT]-x(2)-[IL]-[GLV]-[EK]-x-[ACG]-x-[ADE]-x(3)-[AP]-[IL]-x-P-G-[IV]-[ANS]-[NT]-[APV]-x-[ADE]-[ILV]-x-[ILM]-[AG]-x-[ADE]-x-G Occurences: 6(5) ALKD_PSEPU : 92- 139: drsmf AaveaaGAQFvVTPGITedILEaGvDseiPLlPGISTPsEImMGyAlG yrrfk ALKD_PSEPU : 93- 139: rsmfa Aveaa-GAQFvVTPGITedILEaGvDseiPLlPGISTPsEImMGyAlG yrrfk ALKH_ECOLI : 81- 128: npqql AevteaGAQFaISPGLTepLLKaAtEgtiPLiPGISTVsELmLGmDyG lkefk ALKH_ERWCH : 81- 128: npqql AevtaaGAQFaISPGLTepLLKaAtEgtiPLiPGISTVsELmLGmDyG lrefk ALKH_HAEIN : 83- 128: eqvvl Akss--GADFvVTPGLNpkIVKlCqDlnfPItPGVNNPmAIeIAlEmG isavk ALKH_ZYMMO : 75- 120: kmldq Aqea--GCEFfVSPGLTadLGKhAvAqkaALlPGVANAaDVmLGlDlG ldrfk H 8: 87.8962 5( 5) P-[ILM]-A-x(1,3)-A-L-x(2)-G-[GI]-x(2)-[TV]-x(2)-[FLV]-[PT]-[AL]-[ER]-[AST]-[EPQS]-x-[AG]-[LV]-[DEK]-x-I-x-[AILV]-[ILM]-x(4)-[AGP]-[ADEQ]-[ALV]-x-[GIV]-x-[AGP]-[GT]-[GTV]-[GLV]-x-[ADGN] Occurences: 5(5) ALKD_PSEPU : 42- 87: eedil PLAd--ALaaGGirTleVTLRSQhGLKaIqVLreqrPELcVgAGTVlD rsmfa ALKH_ECOLI : 31- 76: lehav PMAk--ALvaGGvrVleVTLRTEcAVDaIrAIakevPEAiVgAGTVlN pqqla ALKH_ERWCH : 31- 76: lehav PMAk--ALvaGGvrVleLTLRTEcAVEaIrLIaqevPDAiVgAGTVtN pqqla ALKH_HAEIN : 118- 165: pgvnn PMAieiALemGIsaVkfFPAEASgGVKmIkALlgpyAQLqImPTGGiG lhnir ALKH_ZYMMO : 24- 69: iadak PIAe--ALvaGGlnVleVTLRTPcALEaIkIMkevpGAVvGaGTVLnA kmldq I 9: 78.1919 5( 5) E-[AIV]-[NPS]-G-[AG]-V-x(2,4)-A-x(0,2)-G-[GPT]-x(3)-[AILV]-x-[FIM]-x-[DP]-[QT]-[AG]-[GQ]-x-[AGNS]-[GLP]-x-[EN]-x(2)-[DNV]-x(2)-[AG]-[IL]-x-[ANS]-x-[LMV]-[ACG]-x(2)-[AGT]-[GSV] Occurences: 5(5) ALKD_PSEPU : 149- 195: klfpa EISGGVaaikAfgGPfgdIrFcPTGGvNPaNvrNymALpNvMCvgTG wmlds ALKH_ECOLI : 138- 184: kffpa EANGGVkalqAiaGPfsqVrFcPTGGiSPaNyrDylALkSvLCigGS wlvpa ALKH_ERWCH : 138- 184: kffpa EANGGVkalqAiaGPfgkIrFcPTGGiSLkNyrDylALkSvLCvgGS wlvpa ALKH_HAEIN : 138- 184: kffpa EASGGVkmikAllGPyaqLqImPTGGiGLhNirDylAIpNiVAcgGS wfvek ALKH_ZYMMO : 55- 97: ikimk EVPGAVvg--A--GTvlnAkMlDQAQeAGcEffVspGLtAdLGkhAV aqkaa J 10: 78.0732 5( 5) K-x(3,4)-E-[AIV]-[NPS]-G-[AG]-V-x(2,4)-A-x(2)-[GV]-[LP]-x-[AGS]-x-[ILMV]-x(3)-[AP]-[QT]-[EG]-[AG]-[GIV]-[CGNS]-x(4)-[RS]-[DNP]-x-[LM]-[AT]-[AIL]-x(2)-[GIV]-x(3)-[GV] Occurences: 5(5) ALKD_PSEPU : 144- 193: gyrrf KlfpaEISGGVaaikAfgGPfGdIrfcPTGGVNpanvRNyMALpnVmcvG tgwml ALKH_ECOLI : 133- 182: glkef KffpaEANGGVkalqAiaGPfSqVrfcPTGGISpanyRDyLALksVlciG gswlv ALKH_ERWCH : 133- 182: glref KffpaEANGGVkalqAiaGPfGkIrfcPTGGISlknyRDyLALksVlcvG gswlv ALKH_HAEIN : 133- 182: gisav KffpaEASGGVkmikAllGPyAqLqimPTGGIGlhniRDyLAIpnIvacG gswfv ALKH_ZYMMO : 51- 97: aleai Kimk-EVPGAVvg--AgtVLnAkMldqAQEAGCeffvSPgLTAdlGkhaV aqkaa K 11: 67.6181 5( 5) P-x(2,3)-A-L-x(1,2)-A-[DG]-[DG]-[ILV]-x-[PTV]-L-[AE]-x-T-L-x(2)-[ENPQ]-x-[AGL]-x(2)-A-x(3)-[FILM]-x(4)-[AGP]-[ADE]-x(2)-[GIV]-x-[AGL]-x(2)-[ALV] Occurences: 5(5) ALKD_PSEPU : 42- 85: eedil PladALa-AGGIrTLEvTLrsQhGlkAiqvLreqrPElcVgAgtV ldrsm ALKH_ECOLI : 31- 74: lehav PmakALv-AGGVrVLEvTLrtEcAvdAiraIakevPEaiVgAgtV lnpqq ALKH_ERWCH : 31- 74: lehav PmakALv-AGGVrVLElTLrtEcAveAirlIaqevPDaiVgAgtV tnpqq ALKH_HAEIN : 19- 62: elkiv Pvi-ALdnADDIlPLAdTLakNgLsvAeitFrseaAAdaIrLlrA nrpdf ALKH_ZYMMO : 24- 67: iadak PiaeALv-AGGLnVLEvTLrtPcAleAikiMkevpGAvvGaGtvL nakml L 12: 63.9481 5( 5) A-L-x(1,2)-A-[DG]-[DG]-[ILV]-x-[PTV]-L-[AE]-x-T-L-x(2)-[ENPQ]-x-[AGL]-x(2)-A-x(3)-[FILM]-x(4)-[AGP]-[ADE]-x(2)-[GIV]-x-[AGL]-x(2)-[ALV] Occurences: 5(5) ALKD_PSEPU : 46- 85: lplad ALa-AGGIrTLEvTLrsQhGlkAiqvLreqrPElcVgAgtV ldrsm ALKH_ECOLI : 35- 74: vpmak ALv-AGGVrVLEvTLrtEcAvdAiraIakevPEaiVgAgtV lnpqq ALKH_ERWCH : 35- 74: vpmak ALv-AGGVrVLElTLrtEcAveAirlIaqevPDaiVgAgtV tnpqq ALKH_HAEIN : 22- 62: ivpvi ALdnADDIlPLAdTLakNgLsvAeitFrseaAAdaIrLlrA nrpdf ALKH_ZYMMO : 28- 67: kpiae ALv-AGGLnVLEvTLrtPcAleAikiMkevpGAvvGaGtvL nakml M 13: 62.9481 9( 5) A-x(0,2)-L-x(1,2)-A-[DG]-[DG]-[ILV]-x-[PTV]-L-[AE]-x-T-L-x(2)-[ENPQ]-x-[AGL]-x(2)-A-x(3)-[FILM]-x(4)-[AGP]-[ADE]-x(2)-[GIV]-x-[AGL]-x(2)-[ALV] Occurences: 9(5) ALKD_PSEPU : 44- 85: dilpl AdaLa-AGGIrTLEvTLrsQhGlkAiqvLreqrPElcVgAgtV ldrsm ALKD_PSEPU : 46- 85: lplad A--La-AGGIrTLEvTLrsQhGlkAiqvLreqrPElcVgAgtV ldrsm ALKH_ECOLI : 33- 74: havpm AkaLv-AGGVrVLEvTLrtEcAvdAiraIakevPEaiVgAgtV lnpqq ALKH_ECOLI : 35- 74: vpmak A--Lv-AGGVrVLEvTLrtEcAvdAiraIakevPEaiVgAgtV lnpqq ALKH_ERWCH : 33- 74: havpm AkaLv-AGGVrVLElTLrtEcAveAirlIaqevPDaiVgAgtV tnpqq ALKH_ERWCH : 35- 74: vpmak A--Lv-AGGVrVLElTLrtEcAveAirlIaqevPDaiVgAgtV tnpqq ALKH_HAEIN : 22- 62: ivpvi A--LdnADDIlPLAdTLakNgLsvAeitFrseaAAdaIrLlrA nrpdf ALKH_ZYMMO : 26- 67: dakpi AeaLv-AGGLnVLEvTLrtPcAleAikiMkevpGAvvGaGtvL nakml ALKH_ZYMMO : 28- 67: kpiae A--Lv-AGGLnVLEvTLrtPcAleAikiMkevpGAvvGaGtvL nakml N 14: 55.1788 5( 5) A-x(4,5)-A-x(0,1)-G-G-x(3)-[LV]-E-x(2)-L-x-[QST]-[EPQS]-x-[AGN]-x-[DEK]-[AE]-I-x(2)-[ILM]-x(4)-[GIP]-[ADE]-[AILV] Occurences: 5(5) ALKD_PSEPU : 44- 78: dilpl Adala-A-GGirtLEvtLrSQhGlKAIqvLreqrPEL cvgag ALKH_ECOLI : 33- 67: havpm Akalv-A-GGvrvLEvtLrTEcAvDAIraIakevPEA ivgag ALKH_ERWCH : 33- 67: havpm Akalv-A-GGvrvLEltLrTEcAvEAIrlIaqevPDA ivgag ALKH_HAEIN : 174- 210: irdyl AipnivAcGGswfVEkkLiQSnNwDEIgrLvrevIDI ik ALKH_ZYMMO : 26- 60: dakpi Aealv-A-GGlnvLEvtLrTPcAlEAIkiMkevpGAV vgagt O 15: 53.4532 5( 5) A-[DEK]-A-x(0,2)-L-x(1,2)-A-[GN]-x-[ILPV]-[DNR]-x-L-x-[ALV]-[AT]-[GL]-x-[STV]-x(2)-[AG]-x(2)-[AV]-[IV]-x-[AILV] Occurences: 5(5) ALKD_PSEPU : 44- 70: dilpl ADA--La-AGgIRtLeVTLrSqhGlkAIqV lreqr ALKH_ECOLI : 33- 59: havpm AKA--Lv-AGgVRvLeVTLrTecAvdAIrA iakev ALKH_ERWCH : 33- 59: havpm AKA--Lv-AGgVRvLeLTLrTecAveAIrL iaqev ALKH_HAEIN : 54- 83: rseaa ADAirLlrANrPDfLiAAGtVltAeqVVlA kssga ALKH_ZYMMO : 26- 52: dakpi AEA--Lv-AGgLNvLeVTLrTpcAleAIkI mkevp P 16: 51.5088 6( 5) A-x(0,1)-G-G-x(3)-[LV]-E-x(2)-L-x-[QST]-[EPQS]-x-[AGN]-x-[DEK]-[AE]-I-x(2)-[ILM]-x(4)-[GIP]-[ADE]-[AILV] Occurences: 6(5) ALKD_PSEPU : 48- 78: ladal AaGGirtLEvtLrSQhGlKAIqvLreqrPEL cvgag ALKD_PSEPU : 49- 78: adala A-GGirtLEvtLrSQhGlKAIqvLreqrPEL cvgag ALKH_ECOLI : 38- 67: akalv A-GGvrvLEvtLrTEcAvDAIraIakevPEA ivgag ALKH_ERWCH : 38- 67: akalv A-GGvrvLEltLrTEcAvEAIrlIaqevPDA ivgag ALKH_HAEIN : 180- 210: ipniv AcGGswfVEkkLiQSnNwDEIgrLvrevIDI ik ALKH_ZYMMO : 31- 60: aealv A-GGlnvLEvtLrTPcAlEAIkiMkevpGAV vgagt Q 17: 46.1240 5( 5) A-x(2)-L-x(1,2)-A-[GN]-x-[ILPV]-[DNR]-x-L-x(2,4)-T-[LV]-x-[ST]-x(2)-[AGQ]-[LV]-x-[AL]-[AI] Occurences: 5(5) ALKD_PSEPU : 44- 68: dilpl AdaLa-AGgIRtLev--TLrSqhGLkAI qvlre ALKH_ECOLI : 33- 57: havpm AkaLv-AGgVRvLev--TLrTecAVdAI raiak ALKH_ERWCH : 33- 57: havpm AkaLv-AGgVRvLel--TLrTecAVeAI rliaq ALKH_HAEIN : 56- 83: eaaad AirLlrANrPDfLiaagTVlTaeQVvLA kssga ALKH_ZYMMO : 26- 50: dakpi AeaLv-AGgLNvLev--TLrTpcALeAI kimke R 18: 46.1240 5( 5) A-x(2,3)-L-x-A-[GN]-x-[ILPV]-[DNR]-x-L-x(2,4)-T-[LV]-x-[ST]-x(2)-[AGQ]-[LV]-x-[AL]-[AI] Occurences: 5(5) ALKD_PSEPU : 44- 68: dilpl Ada-LaAGgIRtLev--TLrSqhGLkAI qvlre ALKH_ECOLI : 33- 57: havpm Aka-LvAGgVRvLev--TLrTecAVdAI raiak ALKH_ERWCH : 33- 57: havpm Aka-LvAGgVRvLel--TLrTecAVeAI rliaq ALKH_HAEIN : 56- 83: eaaad AirlLrANrPDfLiaagTVlTaeQVvLA kssga ALKH_ZYMMO : 26- 50: dakpi Aea-LvAGgLNvLev--TLrTpcALeAI kimke S 19: 45.8811 5( 5) L-x(1,2)-A-G-[GT]-[ILV]-x-[TV]-[AL]-E-x(2,3)-L-x(2)-[EPQS]-x-[AG]-[ALV]-[DEK]-x-[IV] Occurences: 5(5) ALKD_PSEPU : 47- 68: plada La-AGGIrTLEvt-LrsQhGLKaI qvlre ALKH_ECOLI : 36- 57: pmaka Lv-AGGVrVLEvt-LrtEcAVDaI raiak ALKH_ERWCH : 36- 57: pmaka Lv-AGGVrVLElt-LrtEcAVEaI rliaq ALKH_HAEIN : 68- 91: nrpdf LiaAGTVlTAEqvvLakSsGADfV vtpgl ALKH_ZYMMO : 29- 50: piaea Lv-AGGLnVLEvt-LrtPcALEaI kimke T 20: 36.5436 5( 5) V-[AGL]-[AE]-[GILV]-T-x(1,3)-R-[ST]-x(2)-A-x(2,3)-A-[AI]-x-[AIL] Occurences: 5(5) ALKD_PSEPU : 80- 99: rpelc VGAGTvldRSmfAaveAAgA qfvvt ALKH_ECOLI : 43- 59: aggvr VLEVTl--RTecAvd-AIrA iakev ALKH_ERWCH : 43- 59: aggvr VLELTl--RTecAve-AIrL iaqev ALKH_HAEIN : 43- 59: kngls VAEITf--RSeaAad-AIrL lranr ALKH_ZYMMO : 36- 52: aggln VLEVTl--RTpcAle-AIkI mkevp Number of patterns evaluated by Pratt:4758 Total running time: 2 seconds