------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file ALDOLASE_CLASS_II_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ALDOLASE_CLASS_II_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AGAY_ECOLI 286 ALF1_BACSU 285 ALF1_RHOSH 359 ALF2_BACSU 290 ALF2_RHOSH 354 ALF_CORGL 343 ALF_ECOLI 358 ALF_HAEIN 359 ALF_SCHPO 358 ALF_YEAST 358 GATY_ECOLI 286 Pratt run started at Thu Feb 6 18:35:12 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 24.0203 15( 11) A-x(0,1)-A-x(1,2)-G-x(2)-H-G-x-Y 2: 20.8503 11( 11) E-x-E-x-G-x(2)-G-x(2)-E 3: 20.3503 15( 11) A-x(1,2)-G-x(2)-H-G-x-Y 4: 16.6802 11( 11) G-x(2)-K-x-N-x(2)-T 5: 16.6802 11( 11) G-x(2)-H-G-x-Y 6: 16.6802 11( 11) E-x-G-x(2)-G-x(2)-E 7: 16.6802 11( 11) S-x-M-x-D-x-S 8: 15.6802 13( 11) E-x(0,1)-E-x-G-x(3,4)-G 9: 15.6802 13( 11) E-x-E-x(1,2)-G-x(3,4)-G 10: 15.1802 11( 11) G-x(2)-G-x(0,2)-G-x(1,2)-E 11: 14.6802 11( 11) V-x(1,3)-H-x(0,2)-G-x-S 12: 12.5102 11( 11) K-x-N-x(2)-T 13: 12.5102 11( 11) V-x-H-G 14: 12.5102 11( 11) H-G-x-Y 15: 12.5102 18( 11) L-x(4)-G-x(3)-G 16: 12.5102 14( 11) H-G-x-S 17: 12.5102 11( 11) M-x-D-x-S 18: 12.5102 11( 11) H-x-D-H 19: 12.5102 11( 11) V-x(2)-G-x-S 20: 12.5102 13( 11) A-x(3)-G-x(2)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 31.1595 11( 11) G-x(2)-K-[IMV]-N-[ILV]-[ADN]-T-[DE]-x(3)-[AS] B 2: 30.5119 15( 11) A-x(0,1)-A-x(1,2)-G-[NST]-[ACSV]-H-G-x-Y-x(2)-[ADEGST] C 3: 29.9323 11( 11) E-x-E-[ILV]-G-x(2)-G-[GS]-x-E-x-[DG] D 4: 26.9894 11( 11) K-[IMV]-N-[ILV]-[ADN]-T-[DE]-x(3)-[AS] E 5: 26.8419 15( 11) A-x(1,2)-G-[NST]-[ACSV]-H-G-x-Y-x(2)-[ADEGST] F 6: 25.7622 11( 11) E-[ILV]-G-x(2)-G-[GS]-x-E-x-[DG] G 7: 24.6599 11( 11) S-x-M-x-D-[AGL]-S-x(2)-[APST]-x(3)-[NT] H 8: 23.7873 11( 11) V-[FLM]-H-G-[AGS]-[ST]-[DGS] I 9: 23.1718 11( 11) G-[NST]-[ACSV]-H-G-x-Y-x(2)-[ADEGST] J 10: 20.4898 11( 11) M-x-D-[AGL]-S-x(2)-[APST]-x(3)-[NT] K 11: 20.3503 11( 11) E-x-E-x-G-x(3,4)-G-x(2)-D L 12: 19.8503 11( 11) E-x(0,1)-E-x-G-x(3,4)-G-x(2)-D M 13: 19.3212 11( 11) V-[FILM]-x-G-[AGSV]-S-[DEGS] N 14: 19.0691 11( 11) V-x(1,3)-H-x(0,2)-G-[AGSV]-S-[DGSV] O 15: 18.4199 11( 11) G-x(2)-G-x(0,2)-G-x(1,2)-E-x-[DG] P 16: 16.3481 11( 11) L-x(4)-G-[NSTV]-x(2)-G-x(4)-[AEGNST] Q 17: 15.1035 12( 11) H-G-[AGS]-S R 18: 14.4195 13( 11) A-x(3)-G-x-[AGNPS]-V S 19: 14.1576 11( 11) H-x-D-H-x-[AENQST] T 20: 14.1400 11( 11) H-G-x-Y-x(2)-[ADEGST] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 31.1595 11( 11) G-x(2)-K-[IMV]-N-[ILV]-[ADN]-T-[DE]-x(3)-[AS] Occurences: 11(11) AGAY_ECOLI : 225- 238: rtiel GvtKVNVATElkiA fagav ALF1_BACSU : 226- 239: ksisl GtaKINVNTEnqiS sakav ALF1_RHOSH : 270- 283: rgirh GvrKVNIDTDcrmA ltgqf ALF2_BACSU : 225- 238: kaitl GhaKININTEcmvA wtdet ALF2_RHOSH : 270- 283: rgikm GvrKVNIDTDcrmA mtgqf ALF_CORGL : 268- 281: ealty GviKMNVDTDthyA ftrpi ALF_ECOLI : 281- 294: dsvsy GvvKMNIDTDtqwA twegv ALF_HAEIN : 282- 295: eaigy GaiKMNIDTDtqwA swngi ALF_SCHPO : 281- 294: tgikc GvvKVNIDTDtqfA yvegv ALF_YEAST : 281- 294: tgidn GvvKVNLDTDcqyA yltgi GATY_ECOLI : 227- 240: qtikl GicKINVATElknA fsqal B 2: 30.5119 15( 11) A-x(0,1)-A-x(1,2)-G-[NST]-[ACSV]-H-G-x-Y-x(2)-[ADEGST] Occurences: 15(11) AGAY_ECOLI : 173- 186: gvdsl AvAi-GTAHGlYskT pkidf ALF1_BACSU : 174- 187: gidcl ApAl-GSVHGpYkgE pnlgf ALF1_RHOSH : 191- 204: rvdal AiAm-GTSHGaYkfS rkpdg ALF2_BACSU : 173- 186: nidal AaAl-GSVHGkYqgE pnlgf ALF2_BACSU : 173- 186: nidal A-AalGSVHGkYqgE pnlgf ALF2_BACSU : 174- 186: idala A-Al-GSVHGkYqgE pnlgf ALF2_RHOSH : 191- 204: qvdal AiAc-GTSHGaYkfS rkpdg ALF_CORGL : 204- 217: gryll A-AtfGNVHGvYkpG nvklr ALF_ECOLI : 219- 232: prfti A-AsfGNVHGvYkpG nvvlt ALF_HAEIN : 220- 233: pnftv AaAf-GNVHGvYkpG nvklk ALF_HAEIN : 220- 233: pnftv A-AafGNVHGvYkpG nvklk ALF_HAEIN : 221- 233: nftva A-Af-GNVHGvYkpG nvklk ALF_SCHPO : 218- 231: pyfsi AaAf-GNVHGvYkpG nvklq ALF_SCHPO : 218- 231: pyfsi A-AafGNVHGvYkpG nvklq ALF_SCHPO : 219- 231: yfsia A-Af-GNVHGvYkpG nvklq ALF_YEAST : 219- 232: pnfsi AaAf-GNCHGlYagD ialrp ALF_YEAST : 219- 232: pnfsi A-AafGNCHGlYagD ialrp ALF_YEAST : 220- 232: nfsia A-Af-GNCHGlYagD ialrp GATY_ECOLI : 175- 188: gidsl AvAi-GTAHGmYasA pvldf C 3: 29.9323 11( 11) E-x-E-[ILV]-G-x(2)-G-[GS]-x-E-x-[DG] Occurences: 11(11) AGAY_ECOLI : 132- 144: qdcsv EaELGrlGGvEdD msvda ALF1_BACSU : 135- 147: hgvsv EaELGtvGGqEdD viaeg ALF1_RHOSH : 140- 152: vgasv EgELGvlGSlEkG eaeae ALF2_BACSU : 135- 147: hgvsv EaEVGtvGGmEdG lvggv ALF2_RHOSH : 140- 152: vgasv EgELGvlGSlEtG eseae ALF_CORGL : 158- 170: aniil EvEIGvvGGeEdG veaka ALF_ECOLI : 172- 184: igmtl EiELGctGGeEdG vdnsh ALF_HAEIN : 173- 185: mgmtl EiEIGitGGeEdG vdnsd ALF_SCHPO : 171- 183: mkiwi EmEIGitGGeEdG vdnsh ALF_YEAST : 172- 184: mdqwl EmEIGitGGeEdG vnnen GATY_ECOLI : 134- 146: fdvsv EaELGqlGGqEdD vqvne D 4: 26.9894 11( 11) K-[IMV]-N-[ILV]-[ADN]-T-[DE]-x(3)-[AS] Occurences: 11(11) AGAY_ECOLI : 228- 238: elgvt KVNVATElkiA fagav ALF1_BACSU : 229- 239: slgta KINVNTEnqiS sakav ALF1_RHOSH : 273- 283: rhgvr KVNIDTDcrmA ltgqf ALF2_BACSU : 228- 238: tlgha KININTEcmvA wtdet ALF2_RHOSH : 273- 283: kmgvr KVNIDTDcrmA mtgqf ALF_CORGL : 271- 281: tygvi KMNVDTDthyA ftrpi ALF_ECOLI : 284- 294: sygvv KMNIDTDtqwA twegv ALF_HAEIN : 285- 295: gygai KMNIDTDtqwA swngi ALF_SCHPO : 284- 294: kcgvv KVNIDTDtqfA yvegv ALF_YEAST : 284- 294: dngvv KVNLDTDcqyA yltgi GATY_ECOLI : 230- 240: klgic KINVATElknA fsqal E 5: 26.8419 15( 11) A-x(1,2)-G-[NST]-[ACSV]-H-G-x-Y-x(2)-[ADEGST] Occurences: 15(11) AGAY_ECOLI : 175- 186: dslav Ai-GTAHGlYskT pkidf ALF1_BACSU : 176- 187: dclap Al-GSVHGpYkgE pnlgf ALF1_RHOSH : 193- 204: dalai Am-GTSHGaYkfS rkpdg ALF2_BACSU : 174- 186: idala AalGSVHGkYqgE pnlgf ALF2_BACSU : 175- 186: dalaa Al-GSVHGkYqgE pnlgf ALF2_RHOSH : 193- 204: dalai Ac-GTSHGaYkfS rkpdg ALF_CORGL : 205- 217: rylla AtfGNVHGvYkpG nvklr ALF_ECOLI : 220- 232: rftia AsfGNVHGvYkpG nvvlt ALF_HAEIN : 221- 233: nftva AafGNVHGvYkpG nvklk ALF_HAEIN : 222- 233: ftvaa Af-GNVHGvYkpG nvklk ALF_SCHPO : 219- 231: yfsia AafGNVHGvYkpG nvklq ALF_SCHPO : 220- 231: fsiaa Af-GNVHGvYkpG nvklq ALF_YEAST : 220- 232: nfsia AafGNCHGlYagD ialrp ALF_YEAST : 221- 232: fsiaa Af-GNCHGlYagD ialrp GATY_ECOLI : 177- 188: dslav Ai-GTAHGmYasA pvldf F 6: 25.7622 11( 11) E-[ILV]-G-x(2)-G-[GS]-x-E-x-[DG] Occurences: 11(11) AGAY_ECOLI : 134- 144: csvea ELGrlGGvEdD msvda ALF1_BACSU : 137- 147: vsvea ELGtvGGqEdD viaeg ALF1_RHOSH : 142- 152: asveg ELGvlGSlEkG eaeae ALF2_BACSU : 137- 147: vsvea EVGtvGGmEdG lvggv ALF2_RHOSH : 142- 152: asveg ELGvlGSlEtG eseae ALF_CORGL : 160- 170: iilev EIGvvGGeEdG veaka ALF_ECOLI : 174- 184: mtlei ELGctGGeEdG vdnsh ALF_HAEIN : 175- 185: mtlei EIGitGGeEdG vdnsd ALF_SCHPO : 173- 183: iwiem EIGitGGeEdG vdnsh ALF_YEAST : 174- 184: qwlem EIGitGGeEdG vnnen GATY_ECOLI : 136- 146: vsvea ELGqlGGqEdD vqvne G 7: 24.6599 11( 11) S-x-M-x-D-[AGL]-S-x(2)-[APST]-x(3)-[NT] Occurences: 11(11) AGAY_ECOLI : 100- 113: hagvr SaMiDGShfPfaeN vklvk ALF1_BACSU : 103- 116: hagft SvMiDAShhPfeeN vatta ALF1_RHOSH : 101- 114: rhgft SvMmDGSlqAdmkT vasyd ALF2_BACSU : 103- 116: dagfs SvMiDGShqPideN iamtk ALF2_RHOSH : 101- 114: rhgft SvMmDGSlkAdakT padyd ALF_CORGL : 126- 139: lplfq ShMwDGSavPideN leiaq ALF_ECOLI : 140- 153: kplfs ShMiDLSeeSlqeN ieics ALF_HAEIN : 141- 154: rplfs ShMiDLSeeSmeeN maicr ALF_SCHPO : 139- 152: eplfs ShMlDLSeePkkeN iaqvk ALF_YEAST : 140- 153: eplfs ShMlDLSeeTdeeN istcv GATY_ECOLI : 102- 115: rsgvr SvMiDAShlPfaqN isrvk H 8: 23.7873 11( 11) V-[FLM]-H-G-[AGS]-[ST]-[DGS] Occurences: 11(11) AGAY_ECOLI : 206- 212: vdvpl VLHGASD vpdef ALF1_BACSU : 207- 213: tglpl VLHGGTG iptad ALF1_RHOSH : 230- 236: pathl VMHGSSS vaarl ALF2_BACSU : 206- 212: tdipl VLHGASG ipqdq ALF2_RHOSH : 230- 236: pdthl VMHGSSS vpqel ALF_CORGL : 249- 255: lpfdf VFHGGSG sekek ALF_ECOLI : 262- 268: nslnf VFHGGSG staqe ALF_HAEIN : 263- 269: kpinf VFHGGSG ssree ALF_SCHPO : 262- 268: kpvff VFHGGSG ssvne ALF_YEAST : 262- 268: kplfl VFHGGSG stvqe GATY_ECOLI : 208- 214: vnlpl VLHGASG lstkd I 9: 23.1718 11( 11) G-[NST]-[ACSV]-H-G-x-Y-x(2)-[ADEGST] Occurences: 11(11) AGAY_ECOLI : 177- 186: lavai GTAHGlYskT pkidf ALF1_BACSU : 178- 187: lapal GSVHGpYkgE pnlgf ALF1_RHOSH : 195- 204: laiam GTSHGaYkfS rkpdg ALF2_BACSU : 177- 186: laaal GSVHGkYqgE pnlgf ALF2_RHOSH : 195- 204: laiac GTSHGaYkfS rkpdg ALF_CORGL : 208- 217: laatf GNVHGvYkpG nvklr ALF_ECOLI : 223- 232: iaasf GNVHGvYkpG nvvlt ALF_HAEIN : 224- 233: vaaaf GNVHGvYkpG nvklk ALF_SCHPO : 222- 231: iaaaf GNVHGvYkpG nvklq ALF_YEAST : 223- 232: iaaaf GNCHGlYagD ialrp GATY_ECOLI : 179- 188: lavai GTAHGmYasA pvldf J 10: 20.4898 11( 11) M-x-D-[AGL]-S-x(2)-[APST]-x(3)-[NT] Occurences: 11(11) AGAY_ECOLI : 102- 113: gvrsa MiDGShfPfaeN vklvk ALF1_BACSU : 105- 116: gftsv MiDAShhPfeeN vatta ALF1_RHOSH : 103- 114: gftsv MmDGSlqAdmkT vasyd ALF2_BACSU : 105- 116: gfssv MiDGShqPideN iamtk ALF2_RHOSH : 103- 114: gftsv MmDGSlkAdakT padyd ALF_CORGL : 128- 139: lfqsh MwDGSavPideN leiaq ALF_ECOLI : 142- 153: lfssh MiDLSeeSlqeN ieics ALF_HAEIN : 143- 154: lfssh MiDLSeeSmeeN maicr ALF_SCHPO : 141- 152: lfssh MlDLSeePkkeN iaqvk ALF_YEAST : 142- 153: lfssh MlDLSeeTdeeN istcv GATY_ECOLI : 104- 115: gvrsv MiDAShlPfaqN isrvk K 11: 20.3503 11( 11) E-x-E-x-G-x(3,4)-G-x(2)-D Occurences: 11(11) AGAY_ECOLI : 132- 143: qdcsv EaElGrlg-GveD dmsvd ALF1_BACSU : 135- 146: hgvsv EaElGtvg-GqeD dviae ALF1_RHOSH : 155- 167: ekgea EaEdGsgaeGklD hsqml ALF2_BACSU : 135- 146: hgvsv EaEvGtvg-GmeD glvgg ALF2_RHOSH : 155- 167: etges EaEdGhgaeGklD hsqll ALF_CORGL : 158- 169: aniil EvEiGvvg-GeeD gveak ALF_ECOLI : 172- 183: igmtl EiElGctg-GeeD gvdns ALF_HAEIN : 173- 184: mgmtl EiEiGitg-GeeD gvdns ALF_SCHPO : 171- 182: mkiwi EmEiGitg-GeeD gvdns ALF_YEAST : 172- 183: mdqwl EmEiGitg-GeeD gvnne GATY_ECOLI : 134- 145: fdvsv EaElGqlg-GqeD dvqvn L 12: 19.8503 11( 11) E-x(0,1)-E-x-G-x(3,4)-G-x(2)-D Occurences: 11(11) AGAY_ECOLI : 132- 143: qdcsv EaElGrlg-GveD dmsvd ALF1_BACSU : 135- 146: hgvsv EaElGtvg-GqeD dviae ALF1_RHOSH : 155- 167: ekgea EaEdGsgaeGklD hsqml ALF2_BACSU : 135- 146: hgvsv EaEvGtvg-GmeD glvgg ALF2_RHOSH : 155- 167: etges EaEdGhgaeGklD hsqll ALF_CORGL : 158- 169: aniil EvEiGvvg-GeeD gveak ALF_ECOLI : 172- 183: igmtl EiElGctg-GeeD gvdns ALF_HAEIN : 173- 184: mgmtl EiEiGitg-GeeD gvdns ALF_SCHPO : 171- 182: mkiwi EmEiGitg-GeeD gvdns ALF_YEAST : 172- 183: mdqwl EmEiGitg-GeeD gvnne GATY_ECOLI : 134- 145: fdvsv EaElGqlg-GqeD dvqvn M 13: 19.3212 11( 11) V-[FILM]-x-G-[AGSV]-S-[DEGS] Occurences: 11(11) AGAY_ECOLI : 206- 212: vdvpl VLhGASD vpdef ALF1_BACSU : 45- 51: eeksp VIlGVSE gagry ALF1_RHOSH : 230- 236: pathl VMhGSSS vaarl ALF2_BACSU : 206- 212: tdipl VLhGASG ipqdq ALF2_RHOSH : 230- 236: pdthl VMhGSSS vpqel ALF_CORGL : 249- 255: lpfdf VFhGGSG sekek ALF_ECOLI : 262- 268: nslnf VFhGGSG staqe ALF_HAEIN : 263- 269: kpinf VFhGGSG ssree ALF_SCHPO : 262- 268: kpvff VFhGGSG ssvne ALF_YEAST : 262- 268: kplfl VFhGGSG stvqe GATY_ECOLI : 208- 214: vnlpl VLhGASG lstkd N 14: 19.0691 11( 11) V-x(1,3)-H-x(0,2)-G-[AGSV]-S-[DGSV] Occurences: 11(11) AGAY_ECOLI : 206- 212: vdvpl Vl--H--GASD vpdef ALF1_BACSU : 124- 134: ttakv VelaHfhGVSV eaelg ALF1_RHOSH : 230- 236: pathl Vm--H--GSSS vaarl ALF2_BACSU : 206- 212: tdipl Vl--H--GASG ipqdq ALF2_RHOSH : 230- 236: pdthl Vm--H--GSSS vpqel ALF_CORGL : 249- 255: lpfdf Vf--H--GGSG sekek ALF_ECOLI : 262- 268: nslnf Vf--H--GGSG staqe ALF_HAEIN : 263- 269: kpinf Vf--H--GGSG ssree ALF_SCHPO : 262- 268: kpvff Vf--H--GGSG ssvne ALF_YEAST : 262- 268: kplfl Vf--H--GGSG stvqe GATY_ECOLI : 208- 214: vnlpl Vl--H--GASG lstkd O 15: 18.4199 11( 11) G-x(2)-G-x(0,2)-G-x(1,2)-E-x-[DG] Occurences: 11(11) AGAY_ECOLI : 136- 144: veael GrlG--Gv-EdD msvda ALF1_BACSU : 139- 147: veael GtvG--Gq-EdD viaeg ALF1_RHOSH : 141- 152: gasve GelGvlGslEkG eaeae ALF2_BACSU : 139- 147: veaev GtvG--Gm-EdG lvggv ALF2_RHOSH : 141- 152: gasve GelGvlGslEtG eseae ALF_CORGL : 162- 170: levei GvvG--Ge-EdG veaka ALF_ECOLI : 176- 184: leiel GctG--Ge-EdG vdnsh ALF_HAEIN : 177- 185: leiei GitG--Ge-EdG vdnsd ALF_SCHPO : 175- 183: iemei GitG--Ge-EdG vdnsh ALF_YEAST : 176- 184: lemei GitG--Ge-EdG vnnen GATY_ECOLI : 138- 146: veael GqlG--Gq-EdD vqvne P 16: 16.3481 11( 11) L-x(4)-G-[NSTV]-x(2)-G-x(4)-[AEGNST] Occurences: 11(11) AGAY_ECOLI : 172- 186: tgvds LavaiGTahGlyskT pkidf ALF1_BACSU : 173- 187: tgidc LapalGSvhGpykgE pnlgf ALF1_RHOSH : 190- 204: trvda LaiamGTshGaykfS rkpdg ALF2_BACSU : 172- 186: tnida LaaalGSvhGkyqgE pnlgf ALF2_RHOSH : 190- 204: tqvda LaiacGTshGaykfS rkpdg ALF_CORGL : 203- 217: kgryl LaatfGNvhGvykpG nvklr ALF_ECOLI : 310- 324: aneay LqgqlGNpkGedqpN kkyyd ALF_HAEIN : 311- 325: aneay LqgqlGNpeGpdapN kkyyd ALF_SCHPO : 310- 324: kykdy LmtpvGNpeGadkpN kkkfd ALF_YEAST : 6- 20: gveqi LkrktGVivGedvhN lftya GATY_ECOLI : 174- 188: tgids LavaiGTahGmyasA pvldf Q 17: 15.1035 12( 11) H-G-[AGS]-S Occurences: 12(11) AGAY_ECOLI : 208- 211: vplvl HGAS dvpde ALF1_BACSU : 86- 89: aihld HGSS fesca ALF1_RHOSH : 232- 235: thlvm HGSS svaar ALF2_BACSU : 86- 89: vlhld HGSS aercr ALF2_BACSU : 208- 211: iplvl HGAS gipqd ALF2_RHOSH : 232- 235: thlvm HGSS svpqe ALF_CORGL : 251- 254: fdfvf HGGS gseke ALF_ECOLI : 264- 267: lnfvf HGGS gstaq ALF_HAEIN : 265- 268: infvf HGGS gssre ALF_SCHPO : 264- 267: vffvf HGGS gssvn ALF_YEAST : 264- 267: lflvf HGGS gstvq GATY_ECOLI : 210- 213: lplvl HGAS glstk R 18: 14.4195 13( 11) A-x(3)-G-x-[AGNPS]-V Occurences: 13(11) AGAY_ECOLI : 13- 20: yllqd AqanGyAV pafni ALF1_BACSU : 13- 20: emlnt AkekGyAV gqfnl ALF1_BACSU : 127- 134: kvvel AhfhGvSV eaelg ALF1_RHOSH : 132- 139: rvtda AhwvGaSV egelg ALF2_BACSU : 127- 134: evtdy AakhGvSV eaevg ALF2_RHOSH : 13- 20: qlldh AaeqGyGV pafni ALF2_RHOSH : 132- 139: rvshm AhwvGaSV egelg ALF_CORGL : 82- 89: fahea AksyGiNV alhtd ALF_ECOLI : 97- 104: hvhqm AehyGvPV ilhtd ALF_HAEIN : 98- 105: qvhtl AkeyGvPV ilhtd ALF_SCHPO : 96- 103: yirsi ApffGvPV vmhsd ALF_YEAST : 97- 104: yirsi ApayGiPV vlhsd GATY_ECOLI : 15- 22: qmlnn AqrgGyAV pafni S 19: 14.1576 11( 11) H-x-D-H-x-[AENQST] Occurences: 11(11) AGAY_ECOLI : 80- 85: mplal HlDHhE slddi ALF1_BACSU : 83- 88: vpvai HlDHgS sfesc ALF1_RHOSH : 81- 86: ipicl HqDHgN neatc ALF2_BACSU : 83- 88: vpvvl HlDHgS saerc ALF2_RHOSH : 81- 86: iplcm HqDHgN neatc ALF_CORGL : 92- 97: inval HtDHcQ kevld ALF_ECOLI : 107- 112: vpvil HtDHcA kkllp ALF_HAEIN : 108- 113: vpvil HtDHaA kkllp ALF_SCHPO : 106- 111: vpvvm HsDHcA kkllp ALF_YEAST : 107- 112: ipvvl HsDHcA kkllp GATY_ECOLI : 82- 87: hplai HlDHhT kfddi T 20: 14.1400 11( 11) H-G-x-Y-x(2)-[ADEGST] Occurences: 11(11) AGAY_ECOLI : 180- 186: aigta HGlYskT pkidf ALF1_BACSU : 181- 187: algsv HGpYkgE pnlgf ALF1_RHOSH : 198- 204: amgts HGaYkfS rkpdg ALF2_BACSU : 180- 186: algsv HGkYqgE pnlgf ALF2_RHOSH : 198- 204: acgts HGaYkfS rkpdg ALF_CORGL : 211- 217: tfgnv HGvYkpG nvklr ALF_ECOLI : 226- 232: sfgnv HGvYkpG nvvlt ALF_HAEIN : 227- 233: afgnv HGvYkpG nvklk ALF_SCHPO : 225- 231: afgnv HGvYkpG nvklq ALF_YEAST : 226- 232: afgnc HGlYagD ialrp GATY_ECOLI : 182- 188: aigta HGmYasA pvldf Number of patterns evaluated by Pratt:4106 Total running time: 3 seconds