------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 25 sequences from file ALDOLASE_CLASS_I PATTERN CONSERVATION: CM: min Nr of Seqs to Match 25 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ALDOLASE_CLASS_I.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ALF1_PEA 357 ALF2_PEA 359 ALFA_HUMAN 363 ALFA_MOUSE 363 ALFA_RABIT 363 ALFA_RAT 363 ALFB_CHICK 364 ALFB_HUMAN 363 ALFB_RAT 363 ALFC_HUMAN 363 ALFC_MOUSE 226 ALFC_PEA 356 ALFC_RAT 362 ALFC_SPIOL 394 ALFD_PEA 349 ALFH_CAEEL 366 ALFR_DROME 394 ALF_ARATH 358 ALF_DROME 360 ALF_MAIZE 355 ALF_ORYSA 358 ALF_PLAFA 369 ALF_SPIOL 357 ALF_STACA 295 ALF_TRYBB 371 Pratt run started at Thu Feb 6 18:35:01 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.1802 25( 25) G-x(3,4)-A-x-D-x-S 2: 15.6802 25( 25) P-x(1,2)-E-P-x(0,1)-E 3: 15.6802 26( 25) G-x(1,2)-F-x(1,2)-K-x-R 4: 15.6802 38( 25) V-x(0,1)-P-x(4)-D-x(0,1)-G 5: 15.6802 25( 25) G-x-I-x(2,3)-E-x(0,1)-T 6: 15.6802 25( 25) R-x(2,3)-I-x(3)-N-x(1,2)-E 7: 15.6802 47( 25) G-x(3,4)-A-x(0,1)-D-x-S 8: 15.6802 25( 25) G-x(2,3)-A-x(0,1)-D-x-S 9: 15.6802 29( 25) G-x-G-x(2,3)-A-x(2,3)-S 10: 15.6802 29( 25) G-x(3)-L-x(0,1)-A-x(2,3)-E 11: 15.6802 25( 25) G-x(2,3)-L-A-x(0,1)-D 12: 15.1802 26( 25) I-x(1,3)-E-P-x(0,1)-E 13: 15.1802 29( 25) A-x(2,4)-L-A-x(1,2)-A 14: 15.1802 30( 25) G-x(2,3)-L-A-x(0,2)-D 15: 15.1802 32( 25) L-S-x(0,2)-G-x(3,4)-E 16: 15.1802 25( 25) R-x(3)-I-x(3,5)-N-x(1,2)-E 17: 15.1802 44( 25) G-x(0,1)-I-L-x(1,3)-E 18: 15.1802 48( 25) G-x(1,3)-L-A-x(0,1)-D 19: 14.6802 25( 25) G-x(1,3)-K-x(1,3)-D-x-G 20: 12.5102 25( 25) E-P-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 32.8496 25( 25) G-[EKR]-x-[IL]-L-x(0,1)-A-x(2,3)-E-[QS]-[GNTV]-x-[DST]-x(3)-[ER] B 2: 28.0296 25( 25) G-x(3,4)-A-x-D-[EQ]-S-[GNTV]-x-[ST]-x(4)-[FL] C 3: 27.8881 25( 25) G-x(1,3)-K-x(1,3)-D-x-G-x(2)-[DENP]-x(3)-[GST]-x(2)-[EG]-x(3)-[NQT]-[AGL] D 4: 27.5296 45( 25) G-x(3,4)-A-x(0,1)-D-[EQ]-S-[GNTV]-x-[ST]-x(4)-[FL] E 5: 26.0525 25( 25) G-[AV]-I-x(2,3)-E-x(0,1)-T-[FLMV]-x-[QR]-x-[ADNSTV] F 6: 24.7706 25( 25) E-P-E-[IV]-x(2)-[DGN]-[AG]-x-[DH] G 7: 24.6693 25( 25) G-x(2,3)-L-A-x(0,1)-D-[EK]-[GS]-x(2)-[PST] H 8: 24.4120 40( 25) G-x(0,1)-I-L-x(1,3)-E-[EQST]-x(2)-[DQST]-x-[ADEGNT]-x(2)-[GL] I 9: 24.1693 48( 25) G-x(1,3)-L-A-x(0,1)-D-[EK]-[GS]-x(2)-[PST] J 10: 23.2791 25( 25) P-x(1,2)-E-P-x(0,1)-E-[ILV]-x(2)-[DGNQ]-[AGQ] K 11: 23.0259 28( 25) A-x(2,4)-L-A-x(1,2)-A-x(2)-[ACNST]-[EQS]-x(3)-[IL] L 12: 22.7791 25( 25) I-x(1,3)-E-P-x(0,1)-E-[ILV]-x(2)-[DGNQ]-[AGQ] M 13: 20.4015 30( 25) G-x(2,3)-L-A-x(0,2)-D-x-[EGS]-x(2)-[PST] N 14: 18.3544 25( 25) G-x(2,3)-A-x(0,1)-D-[AEQ]-S O 15: 18.3024 25( 25) R-x(2,3)-I-x(2)-[ENS]-N-x(1,2)-E P 16: 18.2689 28( 25) G-x-G-x(2,3)-A-x(2,3)-S-x(2)-[STV] Q 17: 17.9194 38( 25) V-x(0,1)-P-x-[AILV]-x(2)-D-x(0,1)-G R 18: 17.6108 26( 25) G-x(1,2)-F-x(1,2)-K-x-R-[ACNST] S 19: 15.1802 29( 25) A-x(2,4)-L-A-x(1,2)-A T 20: 15.1802 30( 25) G-x(2,3)-L-A-x(0,2)-D Best patterns with alignements: fitness hits(seqs) Pattern A 1: 32.8496 25( 25) G-[EKR]-x-[IL]-L-x(0,1)-A-x(2,3)-E-[QS]-[GNTV]-x-[DST]-x(3)-[ER] Occurences: 25(25) ALF1_PEA : 23- 39: yiatp GKgIL-Aad-ESTgTigkR lasin ALF2_PEA : 23- 39: yigtp GKgIL-Aad-ESTgTigkR lssin ALFA_HUMAN : 26- 42: rivap GKgIL-Aad-ESTgSiakR lqsig ALFA_MOUSE : 26- 42: rivap GKgIL-Aad-ESTgSiakR lqsig ALFA_RABIT : 26- 42: rivap GKgIL-Aad-ESTgSiakR lqsig ALFA_RAT : 26- 42: rivap GKgIL-Aad-ESTgSiakR lqsig ALFB_CHICK : 27- 43: rivas GKgIL-Aad-ESVgTmgnR lqrin ALFB_HUMAN : 26- 42: sivan GKgIL-Aad-ESVgTmgnR lqrik ALFB_RAT : 26- 42: rivan GKgIL-Aad-ESVgTmgnR lqrik ALFC_HUMAN : 26- 42: rivap GKgIL-Aad-ESVgSmakR lsqig ALFC_MOUSE : 26- 42: rivtp GKgIL-Aad-ESVgSmakR lsqig ALFC_PEA : 24- 40: tiasp GRgIL-Amd-ESNaTcgkR lasig ALFC_RAT : 26- 42: rivap GKgIL-Aad-ESVgSmakR lsqig ALFC_SPIOL : 64- 80: tvasp GRgIL-Amd-ESNaTcgkR lasig ALFD_PEA : 18- 34: tiasp GRgIL-Amd-ESNaTcgkR ldsig ALFH_CAEEL : 31- 47: kivqd GKgIL-Aad-ESTgTigkR ldain ALFR_DROME : 26- 42: kivap GKgIL-Aad-ESGpTmgkR lqdig ALF_ARATH : 23- 39: yiatp GRgIL-Aad-ESTeTigkR fagin ALF_DROME : 26- 42: kivap GKgIL-Aad-ESGpTmgkR lqdig ALF_MAIZE : 23- 39: yigtp GKgIL-Aad-ESTgTigkR lssin ALF_ORYSA : 23- 39: yigtp GKgIL-Aad-ESTgTigkR fasin ALF_PLAFA : 33- 49: klvqa GKgIL-Aad-ESTqTikkR fdnik ALF_SPIOL : 23- 39: yiatp GKvIL-Aad-ESTgTigkR fpsin ALF_STACA : 64- 82: spafn GEkILgAilfEQTmDrevE gkytg ALF_TRYBB : 36- 52: kmtap GKgLL-Aad-ESTgScskR fagig B 2: 28.0296 25( 25) G-x(3,4)-A-x-D-[EQ]-S-[GNTV]-x-[ST]-x(4)-[FL] Occurences: 25(25) ALF1_PEA : 23- 40: yiatp GkgilAaDESTgTigkrL asinv ALF2_PEA : 23- 40: yigtp GkgilAaDESTgTigkrL ssinv ALFA_HUMAN : 26- 43: rivap GkgilAaDESTgSiakrL qsigt ALFA_MOUSE : 26- 43: rivap GkgilAaDESTgSiakrL qsigt ALFA_RABIT : 26- 43: rivap GkgilAaDESTgSiakrL qsigt ALFA_RAT : 26- 43: rivap GkgilAaDESTgSiakrL qsigt ALFB_CHICK : 27- 44: rivas GkgilAaDESVgTmgnrL qrinv ALFB_HUMAN : 26- 43: sivan GkgilAaDESVgTmgnrL qrikv ALFB_RAT : 26- 43: rivan GkgilAaDESVgTmgnrL qrikv ALFC_HUMAN : 26- 43: rivap GkgilAaDESVgSmakrL sqigv ALFC_MOUSE : 26- 43: rivtp GkgilAaDESVgSmakrL sqigv ALFC_PEA : 24- 41: tiasp GrgilAmDESNaTcgkrL asigl ALFC_RAT : 26- 43: rivap GkgilAaDESVgSmakrL sqigv ALFC_SPIOL : 64- 81: tvasp GrgilAmDESNaTcgkrL asigl ALFD_PEA : 18- 35: tiasp GrgilAmDESNaTcgkrL dsigl ALFH_CAEEL : 31- 48: kivqd GkgilAaDESTgTigkrL dainl ALFR_DROME : 26- 43: kivap GkgilAaDESGpTmgkrL qdigv ALF_ARATH : 23- 40: yiatp GrgilAaDESTeTigkrF aginv ALF_DROME : 26- 43: kivap GkgilAaDESGpTmgkrL qdigv ALF_MAIZE : 23- 40: yigtp GkgilAaDESTgTigkrL ssinv ALF_ORYSA : 23- 40: yigtp GkgilAaDESTgTigkrF asinv ALF_PLAFA : 33- 50: klvqa GkgilAaDESTqTikkrF dnikl ALF_SPIOL : 23- 40: yiatp GkvilAaDESTgTigkrF psinv ALF_STACA : 13- 29: ikngk Gfia-AlDQSGgStpkaL kdygv ALF_TRYBB : 36- 53: kmtap GkgllAaDESTgScskrF agigl C 3: 27.8881 25( 25) G-x(1,3)-K-x(1,3)-D-x-G-x(2)-[DENP]-x(3)-[GST]-x(2)-[EG]-x(3)-[NQT]-[AGL] Occurences: 25(25) ALF1_PEA : 101- 122: nnvip Gi--Kv--DkGvvElagTdgEtttQG fdslg ALF2_PEA : 102- 123: agvlp Gi--Kv--DkGtvElagTdgEtttQG ldglg ALFA_HUMAN : 105- 126: kggvv Gi--Kv--DkGvvPlagTngEtttQG ldgls ALFA_MOUSE : 105- 126: kggvv Gi--Kv--DkGvvPlagTngEtttQG ldgls ALFA_RABIT : 105- 126: kggvv Gi--Kv--DkGvvPlagTngEtttQG ldgls ALFA_RAT : 105- 126: kggvv Gi--Kv--DkGvvPlagTngEtttQG ldgls ALFB_CHICK : 106- 127: kgmvv Gi--Kl--DaGtaPlagTngEttiQG ldkla ALFB_HUMAN : 105- 126: kgivv Gi--Kl--DqGgaPlagTnkEttiQG ldgls ALFB_RAT : 105- 126: kgivv Gi--Kl--DqGgaPlagTnkEttiQG ldgls ALFC_HUMAN : 105- 126: kgivv Gi--Kv--DkGvvPlagTdgEtttQG ldgls ALFC_MOUSE : 105- 126: kgilv Gi--Kv--DkGlvPlagTdgEtttQG ldgll ALFC_PEA : 102- 123: qniip Gi--Kv--DkGlvPlagSndEswcQG ldgla ALFC_RAT : 105- 126: kgilv Gi--Kv--DkGvvPlagTdgEtttQG ldgll ALFC_SPIOL : 142- 163: qgivp Gi--Kv--DkGwlPlpgSndEswcQG ldgla ALFD_PEA : 96- 117: qniip Gi--Kv--DkGlvPlagSnnEswcQG ldgla ALFH_CAEEL : 109- 130: qgivp Gi--Kl--DlGvvPlagTigEgttQG ldkla ALFR_DROME : 105- 126: kgiil Gi--Kv--DeGvvPlfgSedEvttQG lddla ALF_ARATH : 101- 122: ngvip Gi--Kv--DkGlvDlagTngEtttQG ldslg ALF_DROME : 105- 126: kgiil Gi--Kv--DkGvvPlfgSedEvttQG lddla ALF_MAIZE : 101- 122: ggvlp Gi--Kv--DkGtiEvvgTdkEtttQG hddlg ALF_ORYSA : 101- 122: ggvlp Gi--Kv--DkGtiEvagTekEtttQG hddlg ALF_PLAFA : 111- 132: eniip Gi--Kv--DkGlvNipcTdeEkstQG ldgla ALF_SPIOL : 101- 122: ggvlp Gi--Kv--DkGtvElagTngEtttQG ldgla ALF_STACA : 23- 48: ldqsg GstpKalkDyGveEneySndEemfNL vhdmr ALF_TRYBB : 114- 135: rgvvp Gi--Kt--DcGlePlveGakGeqmTA gldgy D 4: 27.5296 45( 25) G-x(3,4)-A-x(0,1)-D-[EQ]-S-[GNTV]-x-[ST]-x(4)-[FL] Occurences: 45(25) ALF1_PEA : 23- 40: yiatp GkgilAaDESTgTigkrL asinv ALF1_PEA : 25- 40: atpgk Gila-A-DESTgTigkrL asinv ALF2_PEA : 23- 40: yigtp GkgilAaDESTgTigkrL ssinv ALF2_PEA : 25- 40: gtpgk Gila-A-DESTgTigkrL ssinv ALFA_HUMAN : 26- 43: rivap GkgilAaDESTgSiakrL qsigt ALFA_HUMAN : 28- 43: vapgk Gila-A-DESTgSiakrL qsigt ALFA_MOUSE : 26- 43: rivap GkgilAaDESTgSiakrL qsigt ALFA_MOUSE : 28- 43: vapgk Gila-A-DESTgSiakrL qsigt ALFA_RABIT : 26- 43: rivap GkgilAaDESTgSiakrL qsigt ALFA_RABIT : 28- 43: vapgk Gila-A-DESTgSiakrL qsigt ALFA_RAT : 26- 43: rivap GkgilAaDESTgSiakrL qsigt ALFA_RAT : 28- 43: vapgk Gila-A-DESTgSiakrL qsigt ALFB_CHICK : 27- 44: rivas GkgilAaDESVgTmgnrL qrinv ALFB_CHICK : 29- 44: vasgk Gila-A-DESVgTmgnrL qrinv ALFB_HUMAN : 26- 43: sivan GkgilAaDESVgTmgnrL qrikv ALFB_HUMAN : 28- 43: vangk Gila-A-DESVgTmgnrL qrikv ALFB_RAT : 26- 43: rivan GkgilAaDESVgTmgnrL qrikv ALFB_RAT : 28- 43: vangk Gila-A-DESVgTmgnrL qrikv ALFC_HUMAN : 26- 43: rivap GkgilAaDESVgSmakrL sqigv ALFC_HUMAN : 28- 43: vapgk Gila-A-DESVgSmakrL sqigv ALFC_MOUSE : 26- 43: rivtp GkgilAaDESVgSmakrL sqigv ALFC_MOUSE : 28- 43: vtpgk Gila-A-DESVgSmakrL sqigv ALFC_PEA : 24- 41: tiasp GrgilAmDESNaTcgkrL asigl ALFC_RAT : 26- 43: rivap GkgilAaDESVgSmakrL sqigv ALFC_RAT : 28- 43: vapgk Gila-A-DESVgSmakrL sqigv ALFC_SPIOL : 64- 81: tvasp GrgilAmDESNaTcgkrL asigl ALFD_PEA : 18- 35: tiasp GrgilAmDESNaTcgkrL dsigl ALFH_CAEEL : 31- 48: kivqd GkgilAaDESTgTigkrL dainl ALFH_CAEEL : 33- 48: vqdgk Gila-A-DESTgTigkrL dainl ALFR_DROME : 26- 43: kivap GkgilAaDESGpTmgkrL qdigv ALFR_DROME : 28- 43: vapgk Gila-A-DESGpTmgkrL qdigv ALF_ARATH : 23- 40: yiatp GrgilAaDESTeTigkrF aginv ALF_ARATH : 25- 40: atpgr Gila-A-DESTeTigkrF aginv ALF_DROME : 26- 43: kivap GkgilAaDESGpTmgkrL qdigv ALF_DROME : 28- 43: vapgk Gila-A-DESGpTmgkrL qdigv ALF_MAIZE : 23- 40: yigtp GkgilAaDESTgTigkrL ssinv ALF_MAIZE : 25- 40: gtpgk Gila-A-DESTgTigkrL ssinv ALF_ORYSA : 23- 40: yigtp GkgilAaDESTgTigkrF asinv ALF_ORYSA : 25- 40: gtpgk Gila-A-DESTgTigkrF asinv ALF_PLAFA : 33- 50: klvqa GkgilAaDESTqTikkrF dnikl ALF_PLAFA : 35- 50: vqagk Gila-A-DESTqTikkrF dnikl ALF_SPIOL : 23- 40: yiatp GkvilAaDESTgTigkrF psinv ALF_STACA : 13- 29: ikngk Gfia-AlDQSGgStpkaL kdygv ALF_TRYBB : 36- 53: kmtap GkgllAaDESTgScskrF agigl ALF_TRYBB : 38- 53: tapgk Glla-A-DESTgScskrF agigl E 5: 26.0525 25( 25) G-[AV]-I-x(2,3)-E-x(0,1)-T-[FLMV]-x-[QR]-x-[ADNSTV] Occurences: 25(25) ALF1_PEA : 71- 83: lqyls GVIlfeE-TLyQkS segkp ALF1_PEA : 71- 83: lqyls GVIlf-EeTLyQkS segkp ALF2_PEA : 72- 84: lqyls GVIlfeE-TLyQkT aagkp ALF2_PEA : 72- 84: lqyls GVIlf-EeTLyQkT aagkp ALFA_HUMAN : 75- 87: npcig GVIlfhE-TLyQkA ddgrp ALFA_MOUSE : 75- 87: npcig GVIlfhE-TLyQkA ddgrp ALFA_RABIT : 75- 87: npcig GVIlfhE-TLyQkA ddgrp ALFA_RAT : 75- 87: npcig GVIlfhE-TLyQkA ddgrp ALFB_CHICK : 76- 88: sksig GVIlfhE-TLyQkD ssgkp ALFB_HUMAN : 75- 87: nqsig GVIlfhE-TLyQkD sqgkl ALFB_RAT : 75- 87: sqsig GVIlfhE-TLyQkD sqgkl ALFC_HUMAN : 75- 87: kkcig GVIffhE-TLyQkD dngvp ALFC_MOUSE : 75- 87: kkcig GVIffhE-TLyQkD dngvp ALFC_PEA : 72- 84: geyis GAIlfeE-TLyQsT tdgrk ALFC_PEA : 72- 84: geyis GAIlf-EeTLyQsT tdgrk ALFC_RAT : 75- 87: kkcig GVIffhE-TLyQkD dngvp ALFC_SPIOL : 112- 124: gqyvs GAIlfeE-TLyQsT tdgkk ALFC_SPIOL : 112- 124: gqyvs GAIlf-EeTLyQsT tdgkk ALFD_PEA : 66- 78: geyis GAIlfeE-TLyQsT vdgrk ALFD_PEA : 66- 78: geyis GAIlf-EeTLyQsT vdgrk ALFH_CAEEL : 79- 91: nqhis GVIlyeE-TFhQsT dkgek ALFH_CAEEL : 79- 91: nqhis GVIly-EeTFhQsT dkgek ALFR_DROME : 75- 87: aenis GVIlfhE-TLyQkA ddgtp ALF_ARATH : 71- 83: ypcls GVIlfeE-TLyQkT sdgkp ALF_ARATH : 71- 83: ypcls GVIlf-EeTLyQkT sdgkp ALF_DROME : 75- 87: aenis GVIlfhE-TLyQkA ddgtp ALF_MAIZE : 71- 83: lqyis GVIlfeE-TLyQkT kdgkp ALF_MAIZE : 71- 83: lqyis GVIlf-EeTLyQkT kdgkp ALF_ORYSA : 71- 83: lqyls GVIlfeE-TLyQkT kdgkp ALF_ORYSA : 71- 83: lqyls GVIlf-EeTLyQkT kdgkp ALF_PLAFA : 81- 93: gkfis GAIlfeE-TLfQkN eagvp ALF_PLAFA : 81- 93: gkfis GAIlf-EeTLfQkN eagvp ALF_SPIOL : 71- 83: lpyls GVIlfeE-TLyQkT adgkp ALF_SPIOL : 71- 83: lpyls GVIlf-EeTLyQkT adgkp ALF_STACA : 69- 81: gekil GAIlf-EqTMdReV egkyt ALF_TRYBB : 84- 96: eqyis GVIlhdE-TVyQkA ktget F 6: 24.7706 25( 25) E-P-E-[IV]-x(2)-[DGN]-[AG]-x-[DH] Occurences: 25(25) ALF1_PEA : 183- 192: lvlfv EPEIltDGsH diakc ALF2_PEA : 184- 193: lvpiv EPEIlvDGsH dilkc ALFA_HUMAN : 187- 196: ivpiv EPEIlpDGdH dlkrc ALFA_MOUSE : 187- 196: ivpiv EPEIlpDGdH dlkrc ALFA_RABIT : 187- 196: ivpiv EPEIlpDGdH dlkrc ALFA_RAT : 187- 196: ivpiv EPEIlpDGdH dlkrc ALFB_CHICK : 188- 197: lvpiv EPEVlpDGdH dlqrc ALFB_HUMAN : 187- 196: lvpiv EPEVipDGdH dlehc ALFB_RAT : 187- 196: lvpiv EPEVlpDGdH dlehc ALFC_HUMAN : 187- 196: ivpiv EPEIlpDGdH dlkrc ALFC_MOUSE : 187- 196: ivpiv EPEIlpDGdH dlkrc ALFC_PEA : 183- 192: lvpiv EPEIllDGeH gidrt ALFC_RAT : 187- 196: ivpiv EPEIlpDGdH dlkrc ALFC_SPIOL : 223- 232: ldpil EPEImlDGeH gidrt ALFD_PEA : 177- 186: lvpiv EPEIllDGeH gidrt ALFH_CAEEL : 191- 200: lvpiv EPEVlcDGeH dlara ALFR_DROME : 187- 196: ivpiv EPEVlpDGdH dldga ALF_ARATH : 183- 192: lvpiv EPEVltGGsH dikkc ALF_DROME : 187- 196: ivpiv EPEVlpDGdH dldra ALF_MAIZE : 183- 192: lvpiv EPEIlvDGpH didrc ALF_ORYSA : 183- 192: lvpiv EPEIlvDGpH didpc ALF_PLAFA : 195- 204: lvpiv EPEIlaDGpH sievc ALF_SPIOL : 183- 192: lvpiv EPEIlvDGtH didrc ALF_STACA : 174- 183: lvpii EPEVniNAkD keaie ALF_TRYBB : 197- 206: lvpiv EPEVmiDGtH dietc G 7: 24.6693 25( 25) G-x(2,3)-L-A-x(0,1)-D-[EK]-[GS]-x(2)-[PST] Occurences: 25(25) ALF1_PEA : 23- 35: yiatp GkgiLAaDEStgT igkrl ALF2_PEA : 23- 35: yigtp GkgiLAaDEStgT igkrl ALFA_HUMAN : 26- 38: rivap GkgiLAaDEStgS iakrl ALFA_MOUSE : 26- 38: rivap GkgiLAaDEStgS iakrl ALFA_RABIT : 26- 38: rivap GkgiLAaDEStgS iakrl ALFA_RAT : 26- 38: rivap GkgiLAaDEStgS iakrl ALFB_CHICK : 27- 39: rivas GkgiLAaDESvgT mgnrl ALFB_HUMAN : 26- 38: sivan GkgiLAaDESvgT mgnrl ALFB_RAT : 26- 38: rivan GkgiLAaDESvgT mgnrl ALFC_HUMAN : 26- 38: rivap GkgiLAaDESvgS makrl ALFC_MOUSE : 26- 38: rivtp GkgiLAaDESvgS makrl ALFC_PEA : 24- 36: tiasp GrgiLAmDESnaT cgkrl ALFC_RAT : 26- 38: rivap GkgiLAaDESvgS makrl ALFC_SPIOL : 64- 76: tvasp GrgiLAmDESnaT cgkrl ALFD_PEA : 18- 30: tiasp GrgiLAmDESnaT cgkrl ALFH_CAEEL : 31- 43: kivqd GkgiLAaDEStgT igkrl ALFR_DROME : 26- 38: kivap GkgiLAaDESgpT mgkrl ALF_ARATH : 23- 35: yiatp GrgiLAaDESteT igkrf ALF_DROME : 26- 38: kivap GkgiLAaDESgpT mgkrl ALF_MAIZE : 23- 35: yigtp GkgiLAaDEStgT igkrl ALF_ORYSA : 23- 35: yigtp GkgiLAaDEStgT igkrf ALF_PLAFA : 33- 45: klvqa GkgiLAaDEStqT ikkrf ALF_SPIOL : 23- 35: yiatp GkviLAaDEStgT igkrf ALF_STACA : 87- 97: egkyt Gsy-LA-DKGivP flkvd ALF_TRYBB : 36- 48: kmtap GkglLAaDEStgS cskrf H 8: 24.4120 40( 25) G-x(0,1)-I-L-x(1,3)-E-[EQST]-x(2)-[DQST]-x-[ADEGNT]-x(2)-[GL] Occurences: 40(25) ALF1_PEA : 25- 40: atpgk G-ILaadEStgTiGkrL asinv ALF2_PEA : 25- 40: gtpgk G-ILaadEStgTiGkrL ssinv ALF2_PEA : 72- 87: lqyls GvILfe-ETlyQkTaaG kpfvd ALFA_HUMAN : 28- 43: vapgk G-ILaadEStgSiAkrL qsigt ALFA_HUMAN : 75- 90: npcig GvILfh-ETlyQkAddG rpfpq ALFA_MOUSE : 28- 43: vapgk G-ILaadEStgSiAkrL qsigt ALFA_MOUSE : 75- 90: npcig GvILfh-ETlyQkAddG rpfpq ALFA_RABIT : 28- 43: vapgk G-ILaadEStgSiAkrL qsigt ALFA_RABIT : 75- 90: npcig GvILfh-ETlyQkAddG rpfpq ALFA_RAT : 28- 43: vapgk G-ILaadEStgSiAkrL qsigt ALFA_RAT : 75- 90: npcig GvILfh-ETlyQkAddG rpfpq ALFB_CHICK : 29- 44: vasgk G-ILaadESvgTmGnrL qrinv ALFB_CHICK : 76- 91: sksig GvILfh-ETlyQkDssG kpfpa ALFB_HUMAN : 28- 43: vangk G-ILaadESvgTmGnrL qrikv ALFB_HUMAN : 75- 90: nqsig GvILfh-ETlyQkDsqG klfrn ALFB_RAT : 28- 43: vangk G-ILaadESvgTmGnrL qrikv ALFB_RAT : 75- 90: sqsig GvILfh-ETlyQkDsqG klfrn ALFC_HUMAN : 28- 43: vapgk G-ILaadESvgSmAkrL sqigv ALFC_MOUSE : 28- 43: vtpgk G-ILaadESvgSmAkrL sqigv ALFC_PEA : 26- 41: aspgr G-ILamdESnaTcGkrL asigl ALFC_PEA : 72- 87: geyis GaILfe-ETlyQsTtdG rkivd ALFC_RAT : 28- 43: vapgk G-ILaadESvgSmAkrL sqigv ALFC_SPIOL : 66- 81: aspgr G-ILamdESnaTcGkrL asigl ALFC_SPIOL : 112- 127: gqyvs GaILfe-ETlyQsTtdG kkmvd ALFD_PEA : 20- 35: aspgr G-ILamdESnaTcGkrL dsigl ALFD_PEA : 66- 81: geyis GaILfe-ETlyQsTvdG rkivd ALFH_CAEEL : 33- 48: vqdgk G-ILaadEStgTiGkrL dainl ALFH_CAEEL : 79- 94: nqhis GvILye-ETfhQsTdkG ekftd ALFR_DROME : 28- 43: vapgk G-ILaadESgpTmGkrL qdigv ALFR_DROME : 75- 90: aenis GvILfh-ETlyQkAddG tpfae ALF_ARATH : 71- 86: ypcls GvILfe-ETlyQkTsdG kpfvd ALF_DROME : 28- 43: vapgk G-ILaadESgpTmGkrL qdigv ALF_DROME : 75- 90: aenis GvILfh-ETlyQkAddG tpfae ALF_MAIZE : 25- 40: gtpgk G-ILaadEStgTiGkrL ssinv ALF_MAIZE : 71- 86: lqyis GvILfe-ETlyQkTkdG kpfvd ALF_ORYSA : 71- 86: lqyls GvILfe-ETlyQkTkdG kpfvd ALF_PLAFA : 81- 96: gkfis GaILfe-ETlfQkNeaG vpmvn ALF_SPIOL : 71- 86: lpyls GvILfe-ETlyQkTadG kpfvd ALF_STACA : 69- 83: gekil GaILf--EQtmDrEveG kytgs ALF_TRYBB : 84- 99: eqyis GvILhd-ETvyQkAktG etfpq I 9: 24.1693 48( 25) G-x(1,3)-L-A-x(0,1)-D-[EK]-[GS]-x(2)-[PST] Occurences: 48(25) ALF1_PEA : 23- 35: yiatp GkgiLAaDEStgT igkrl ALF1_PEA : 25- 35: atpgk Gi--LAaDEStgT igkrl ALF2_PEA : 23- 35: yigtp GkgiLAaDEStgT igkrl ALF2_PEA : 25- 35: gtpgk Gi--LAaDEStgT igkrl ALFA_HUMAN : 26- 38: rivap GkgiLAaDEStgS iakrl ALFA_HUMAN : 28- 38: vapgk Gi--LAaDEStgS iakrl ALFA_MOUSE : 26- 38: rivap GkgiLAaDEStgS iakrl ALFA_MOUSE : 28- 38: vapgk Gi--LAaDEStgS iakrl ALFA_RABIT : 26- 38: rivap GkgiLAaDEStgS iakrl ALFA_RABIT : 28- 38: vapgk Gi--LAaDEStgS iakrl ALFA_RAT : 26- 38: rivap GkgiLAaDEStgS iakrl ALFA_RAT : 28- 38: vapgk Gi--LAaDEStgS iakrl ALFB_CHICK : 27- 39: rivas GkgiLAaDESvgT mgnrl ALFB_CHICK : 29- 39: vasgk Gi--LAaDESvgT mgnrl ALFB_HUMAN : 26- 38: sivan GkgiLAaDESvgT mgnrl ALFB_HUMAN : 28- 38: vangk Gi--LAaDESvgT mgnrl ALFB_RAT : 26- 38: rivan GkgiLAaDESvgT mgnrl ALFB_RAT : 28- 38: vangk Gi--LAaDESvgT mgnrl ALFC_HUMAN : 26- 38: rivap GkgiLAaDESvgS makrl ALFC_HUMAN : 28- 38: vapgk Gi--LAaDESvgS makrl ALFC_MOUSE : 26- 38: rivtp GkgiLAaDESvgS makrl ALFC_MOUSE : 28- 38: vtpgk Gi--LAaDESvgS makrl ALFC_PEA : 24- 36: tiasp GrgiLAmDESnaT cgkrl ALFC_PEA : 26- 36: aspgr Gi--LAmDESnaT cgkrl ALFC_RAT : 26- 38: rivap GkgiLAaDESvgS makrl ALFC_RAT : 28- 38: vapgk Gi--LAaDESvgS makrl ALFC_SPIOL : 64- 76: tvasp GrgiLAmDESnaT cgkrl ALFC_SPIOL : 66- 76: aspgr Gi--LAmDESnaT cgkrl ALFD_PEA : 18- 30: tiasp GrgiLAmDESnaT cgkrl ALFD_PEA : 20- 30: aspgr Gi--LAmDESnaT cgkrl ALFH_CAEEL : 31- 43: kivqd GkgiLAaDEStgT igkrl ALFH_CAEEL : 33- 43: vqdgk Gi--LAaDEStgT igkrl ALFR_DROME : 26- 38: kivap GkgiLAaDESgpT mgkrl ALFR_DROME : 28- 38: vapgk Gi--LAaDESgpT mgkrl ALF_ARATH : 23- 35: yiatp GrgiLAaDESteT igkrf ALF_ARATH : 25- 35: atpgr Gi--LAaDESteT igkrf ALF_DROME : 26- 38: kivap GkgiLAaDESgpT mgkrl ALF_DROME : 28- 38: vapgk Gi--LAaDESgpT mgkrl ALF_MAIZE : 23- 35: yigtp GkgiLAaDEStgT igkrl ALF_MAIZE : 25- 35: gtpgk Gi--LAaDEStgT igkrl ALF_ORYSA : 23- 35: yigtp GkgiLAaDEStgT igkrf ALF_ORYSA : 25- 35: gtpgk Gi--LAaDEStgT igkrf ALF_PLAFA : 33- 45: klvqa GkgiLAaDEStqT ikkrf ALF_PLAFA : 35- 45: vqagk Gi--LAaDEStqT ikkrf ALF_SPIOL : 23- 35: yiatp GkviLAaDEStgT igkrf ALF_STACA : 87- 97: egkyt Gsy-LA-DKGivP flkvd ALF_TRYBB : 36- 48: kmtap GkglLAaDEStgS cskrf ALF_TRYBB : 38- 48: tapgk Gl--LAaDEStgS cskrf J 10: 23.2791 25( 25) P-x(1,2)-E-P-x(0,1)-E-[ILV]-x(2)-[DGNQ]-[AGQ] Occurences: 25(25) ALF1_PEA : 151- 161: vlkig Pn-EPsELsiQQ naqgl ALF2_PEA : 181- 191: englv PivEP-EIlvDG shdil ALFA_HUMAN : 184- 194: qngiv PivEP-EIlpDG dhdlk ALFA_MOUSE : 184- 194: qngiv PivEP-EIlpDG dhdlk ALFA_RABIT : 184- 194: qngiv PivEP-EIlpDG dhdlk ALFA_RAT : 184- 194: qngiv PivEP-EIlpDG dhdlk ALFB_CHICK : 185- 195: qnglv PivEP-EVlpDG dhdlq ALFB_HUMAN : 184- 194: qnglv PivEP-EVipDG dhdle ALFB_RAT : 184- 194: qnglv PivEP-EVlpDG dhdle ALFC_HUMAN : 184- 194: qngiv PivEP-EIlpDG dhdlk ALFC_MOUSE : 184- 194: qngiv PivEP-EIlpDG dhdlk ALFC_PEA : 180- 190: dnglv PivEP-EIllDG ehgid ALFC_RAT : 184- 194: qngiv PivEP-EIlpDG dhdlk ALFC_SPIOL : 220- 230: dngld PilEP-EImlDG ehgid ALFD_PEA : 174- 184: dnglv PivEP-EIllDG ehgid ALFH_CAEEL : 188- 198: anglv PivEP-EVlcDG ehdla ALFR_DROME : 184- 194: sqriv PivEP-EVlpDG dhdld ALF_ARATH : 180- 190: englv PivEP-EVltGG shdik ALF_DROME : 184- 194: sqriv PivEP-EVlpDG dhdld ALF_MAIZE : 180- 190: englv PivEP-EIlvDG phdid ALF_ORYSA : 180- 190: englv PivEP-EIlvDG phdid ALF_PLAFA : 192- 202: qnrlv PivEP-EIlaDG phsie ALF_SPIOL : 180- 190: englv PivEP-EIlvDG thdid ALF_STACA : 171- 181: aaglv PiiEP-EVniNA kdkea ALF_TRYBB : 194- 204: lcglv PivEP-EVmiDG thdie K 11: 23.0259 28( 25) A-x(2,4)-L-A-x(1,2)-A-x(2)-[ACNST]-[EQS]-x(3)-[IL] Occurences: 28(25) ALF1_PEA : 163- 178: siqqn Aqg--LAryAiiCQengL vlfve ALF2_PEA : 164- 179: sihen Ayg--LAryAviCQengL vpive ALFA_HUMAN : 167- 182: aimen Anv--LAryAsiCQqngI vpive ALFA_MOUSE : 167- 182: aimen Anv--LAryAsiCQqngI vpive ALFA_RABIT : 167- 182: aimen Anv--LAryAsiCQqngI vpive ALFA_RAT : 167- 182: aimen Anv--LAryAsiCQqngI vpive ALFB_CHICK : 168- 183: aiqen Ant--LAryAsiCQqngL vpive ALFB_HUMAN : 167- 182: aiqen Ana--LAryAsiCQqngL vpive ALFB_RAT : 167- 182: aiqen Ana--LAryAsiCQqngL vpive ALFC_HUMAN : 167- 182: ailen Anv--LAryAsiCQqngI vpive ALFC_MOUSE : 167- 182: ailen Anv--LAryAsiCQqngI vpive ALFC_PEA : 162- 178: lavke Aawg-LAryAaiSQdngL vpive ALFC_PEA : 163- 178: avkea Awg--LAryAaiSQdngL vpive ALFC_RAT : 167- 182: ailen Anv--LAryAsiCQqngI vpive ALFC_SPIOL : 202- 218: lavke Aawg-LAryAaiTQdngL dpile ALFC_SPIOL : 203- 218: avkea Awg--LAryAaiTQdngL dpile ALFD_PEA : 156- 172: lavke Aawg-LAryAaiSQdngL vpive ALFD_PEA : 157- 172: avkea Awg--LAryAaiSQdngL vpive ALFH_CAEEL : 171- 186: gmlen Anv--LAryAsiCQangL vpive ALFR_DROME : 167- 182: silen Anv--LAryAsiCQsqrI vpive ALF_ARATH : 163- 178: siqed Arv--LAryAiiCQengL vpive ALF_DROME : 167- 182: silen Anv--LAryAsiCQsqrI vpive ALF_MAIZE : 163- 178: aidln Aqg--LAryAiiCQengL vpive ALF_ORYSA : 163- 178: aihln Aqg--LAryAiiCQengL vpive ALF_PLAFA : 175- 190: sihet Awg--LAryAsiCQqnrL vpive ALF_SPIOL : 318- 334: envak AqevfLAr-AkgNSeatL gkyqg ALF_STACA : 186- 202: akdke AieanLAe-AikAEldnL kkdqy ALF_TRYBB : 177- 192: vvrfn Aet--LAryAilSQlcgL vpive L 12: 22.7791 25( 25) I-x(1,3)-E-P-x(0,1)-E-[ILV]-x(2)-[DGNQ]-[AGQ] Occurences: 25(25) ALF1_PEA : 149- 161: ravlk IgpnEPsELsiQQ naqgl ALF2_PEA : 182- 191: nglvp Iv--EP-EIlvDG shdil ALFA_HUMAN : 185- 194: ngivp Iv--EP-EIlpDG dhdlk ALFA_MOUSE : 185- 194: ngivp Iv--EP-EIlpDG dhdlk ALFA_RABIT : 185- 194: ngivp Iv--EP-EIlpDG dhdlk ALFA_RAT : 185- 194: ngivp Iv--EP-EIlpDG dhdlk ALFB_CHICK : 186- 195: nglvp Iv--EP-EVlpDG dhdlq ALFB_HUMAN : 185- 194: nglvp Iv--EP-EVipDG dhdle ALFB_RAT : 185- 194: nglvp Iv--EP-EVlpDG dhdle ALFC_HUMAN : 185- 194: ngivp Iv--EP-EIlpDG dhdlk ALFC_MOUSE : 185- 194: ngivp Iv--EP-EIlpDG dhdlk ALFC_PEA : 181- 190: nglvp Iv--EP-EIllDG ehgid ALFC_RAT : 185- 194: ngivp Iv--EP-EIlpDG dhdlk ALFC_SPIOL : 221- 230: ngldp Il--EP-EImlDG ehgid ALFD_PEA : 175- 184: nglvp Iv--EP-EIllDG ehgid ALFH_CAEEL : 189- 198: nglvp Iv--EP-EVlcDG ehdla ALFR_DROME : 185- 194: qrivp Iv--EP-EVlpDG dhdld ALF_ARATH : 181- 190: nglvp Iv--EP-EVltGG shdik ALF_DROME : 185- 194: qrivp Iv--EP-EVlpDG dhdld ALF_MAIZE : 181- 190: nglvp Iv--EP-EIlvDG phdid ALF_ORYSA : 181- 190: nglvp Iv--EP-EIlvDG phdid ALF_PLAFA : 193- 202: nrlvp Iv--EP-EIlaDG phsie ALF_SPIOL : 181- 190: nglvp Iv--EP-EIlvDG thdid ALF_STACA : 172- 181: aglvp Ii--EP-EVniNA kdkea ALF_TRYBB : 195- 204: cglvp Iv--EP-EVmiDG thdie M 13: 20.4015 30( 25) G-x(2,3)-L-A-x(0,2)-D-x-[EGS]-x(2)-[PST] Occurences: 30(25) ALF1_PEA : 23- 35: yiatp GkgiLAa-DeStgT igkrl ALF1_PEA : 107- 120: ikvdk GvveLAgtDgEttT qgfds ALF2_PEA : 23- 35: yigtp GkgiLAa-DeStgT igkrl ALF2_PEA : 108- 121: ikvdk GtveLAgtDgEttT qgldg ALFA_HUMAN : 26- 38: rivap GkgiLAa-DeStgS iakrl ALFA_MOUSE : 26- 38: rivap GkgiLAa-DeStgS iakrl ALFA_RABIT : 26- 38: rivap GkgiLAa-DeStgS iakrl ALFA_RAT : 26- 38: rivap GkgiLAa-DeStgS iakrl ALFB_CHICK : 27- 39: rivas GkgiLAa-DeSvgT mgnrl ALFB_HUMAN : 26- 38: sivan GkgiLAa-DeSvgT mgnrl ALFB_RAT : 26- 38: rivan GkgiLAa-DeSvgT mgnrl ALFC_HUMAN : 26- 38: rivap GkgiLAa-DeSvgS makrl ALFC_HUMAN : 111- 124: ikvdk GvvpLAgtDgEttT qgldg ALFC_MOUSE : 26- 38: rivtp GkgiLAa-DeSvgS makrl ALFC_MOUSE : 111- 124: ikvdk GlvpLAgtDgEttT qgldg ALFC_PEA : 24- 36: tiasp GrgiLAm-DeSnaT cgkrl ALFC_RAT : 26- 38: rivap GkgiLAa-DeSvgS makrl ALFC_RAT : 111- 124: ikvdk GvvpLAgtDgEttT qgldg ALFC_SPIOL : 64- 76: tvasp GrgiLAm-DeSnaT cgkrl ALFD_PEA : 18- 30: tiasp GrgiLAm-DeSnaT cgkrl ALFH_CAEEL : 31- 43: kivqd GkgiLAa-DeStgT igkrl ALFR_DROME : 26- 38: kivap GkgiLAa-DeSgpT mgkrl ALF_ARATH : 23- 35: yiatp GrgiLAa-DeSteT igkrf ALF_DROME : 26- 38: kivap GkgiLAa-DeSgpT mgkrl ALF_MAIZE : 23- 35: yigtp GkgiLAa-DeStgT igkrl ALF_ORYSA : 23- 35: yigtp GkgiLAa-DeStgT igkrf ALF_PLAFA : 33- 45: klvqa GkgiLAa-DeStqT ikkrf ALF_SPIOL : 23- 35: yiatp GkviLAa-DeStgT igkrf ALF_STACA : 87- 97: egkyt Gsy-LA--DkGivP flkvd ALF_TRYBB : 36- 48: kmtap GkglLAa-DeStgS cskrf N 14: 18.3544 25( 25) G-x(2,3)-A-x(0,1)-D-[AEQ]-S Occurences: 25(25) ALF1_PEA : 25- 32: atpgk GilaA-DES tgtig ALF1_PEA : 25- 32: atpgk Gil-AaDES tgtig ALF2_PEA : 25- 32: gtpgk GilaA-DES tgtig ALF2_PEA : 25- 32: gtpgk Gil-AaDES tgtig ALFA_HUMAN : 28- 35: vapgk GilaA-DES tgsia ALFA_HUMAN : 28- 35: vapgk Gil-AaDES tgsia ALFA_MOUSE : 28- 35: vapgk GilaA-DES tgsia ALFA_MOUSE : 28- 35: vapgk Gil-AaDES tgsia ALFA_RABIT : 28- 35: vapgk GilaA-DES tgsia ALFA_RABIT : 28- 35: vapgk Gil-AaDES tgsia ALFA_RAT : 28- 35: vapgk GilaA-DES tgsia ALFA_RAT : 28- 35: vapgk Gil-AaDES tgsia ALFB_CHICK : 29- 36: vasgk GilaA-DES vgtmg ALFB_CHICK : 29- 36: vasgk Gil-AaDES vgtmg ALFB_HUMAN : 28- 35: vangk GilaA-DES vgtmg ALFB_HUMAN : 28- 35: vangk Gil-AaDES vgtmg ALFB_RAT : 28- 35: vangk GilaA-DES vgtmg ALFB_RAT : 28- 35: vangk Gil-AaDES vgtmg ALFC_HUMAN : 28- 35: vapgk GilaA-DES vgsma ALFC_HUMAN : 28- 35: vapgk Gil-AaDES vgsma ALFC_MOUSE : 28- 35: vtpgk GilaA-DES vgsma ALFC_MOUSE : 28- 35: vtpgk Gil-AaDES vgsma ALFC_PEA : 26- 33: aspgr Gil-AmDES natcg ALFC_RAT : 28- 35: vapgk GilaA-DES vgsma ALFC_RAT : 28- 35: vapgk Gil-AaDES vgsma ALFC_SPIOL : 66- 73: aspgr Gil-AmDES natcg ALFD_PEA : 20- 27: aspgr Gil-AmDES natcg ALFH_CAEEL : 33- 40: vqdgk GilaA-DES tgtig ALFH_CAEEL : 33- 40: vqdgk Gil-AaDES tgtig ALFR_DROME : 28- 35: vapgk GilaA-DES gptmg ALFR_DROME : 28- 35: vapgk Gil-AaDES gptmg ALF_ARATH : 25- 32: atpgr GilaA-DES tetig ALF_ARATH : 25- 32: atpgr Gil-AaDES tetig ALF_DROME : 28- 35: vapgk GilaA-DES gptmg ALF_DROME : 28- 35: vapgk Gil-AaDES gptmg ALF_MAIZE : 25- 32: gtpgk GilaA-DES tgtig ALF_MAIZE : 25- 32: gtpgk Gil-AaDES tgtig ALF_ORYSA : 25- 32: gtpgk GilaA-DES tgtig ALF_ORYSA : 25- 32: gtpgk Gil-AaDES tgtig ALF_PLAFA : 35- 42: vqagk GilaA-DES tqtik ALF_PLAFA : 35- 42: vqagk Gil-AaDES tqtik ALF_SPIOL : 340- 347: gkyqg GaggA-DAS eslhv ALF_STACA : 13- 21: ikngk GfiaAlDQS ggstp ALF_TRYBB : 38- 45: tapgk GllaA-DES tgscs ALF_TRYBB : 38- 45: tapgk Gll-AaDES tgscs O 15: 18.3024 25( 25) R-x(2,3)-I-x(2)-[ENS]-N-x(1,2)-E Occurences: 25(25) ALF1_PEA : 39- 49: gtigk RlasInvENi-E anrqa ALF2_PEA : 39- 49: gtigk RlssInvENv-E snrqa ALFA_HUMAN : 42- 52: gsiak RlqsIgtENt-E enrrf ALFA_HUMAN : 42- 53: gsiak RlqsIgtENteE nrrfy ALFA_MOUSE : 42- 52: gsiak RlqsIgtENt-E enrrf ALFA_MOUSE : 42- 53: gsiak RlqsIgtENteE nrrfy ALFA_RABIT : 42- 52: gsiak RlqsIgtENt-E enrrf ALFA_RABIT : 42- 53: gsiak RlqsIgtENteE nrrfy ALFA_RAT : 42- 52: gsiak RlqsIgtENt-E enrrf ALFA_RAT : 42- 53: gsiak RlqsIgtENteE nrrfy ALFB_CHICK : 43- 53: gtmgn RlqrInvENt-E enrra ALFB_CHICK : 43- 54: gtmgn RlqrInvENteE nrraf ALFB_HUMAN : 42- 52: gtmgn RlqrIkvENt-E enrrq ALFB_HUMAN : 42- 53: gtmgn RlqrIkvENteE nrrqf ALFB_RAT : 42- 52: gtmgn RlqrIkvENt-E enrrq ALFB_RAT : 42- 53: gtmgn RlqrIkvENteE nrrqf ALFC_HUMAN : 42- 52: gsmak RlsqIgvENt-E enrrl ALFC_HUMAN : 42- 53: gsmak RlsqIgvENteE nrrly ALFC_MOUSE : 42- 52: gsmak RlsqIgvENt-E enrrl ALFC_MOUSE : 42- 53: gsmak RlsqIgvENteE nrrly ALFC_PEA : 40- 50: atcgk RlasIglENt-E vnrqa ALFC_RAT : 42- 52: gsmak RlsqIgvENt-E enrrl ALFC_RAT : 42- 53: gsmak RlsqIgvENteE nrrly ALFC_SPIOL : 80- 90: atcgk RlasIglENt-E anrqa ALFD_PEA : 34- 44: atcgk RldsIglENt-E anrqa ALFH_CAEEL : 47- 57: gtigk RldaInlENn-E tnrqk ALFR_DROME : 42- 52: ptmgk RlqdIgvENt-E dnrra ALF_ARATH : 39- 49: etigk RfagInvENt-E snrqa ALF_DROME : 42- 52: ptmgk RlqdIgvENt-E dnrra ALF_MAIZE : 39- 49: gtigk RlssInvENv-E enrra ALF_MAIZE : 39- 50: gtigk RlssInvENveE nrral ALF_ORYSA : 39- 49: gtigk RfasInvENv-E enrrs ALF_ORYSA : 39- 50: gtigk RfasInvENveE nrrsl ALF_PLAFA : 49- 60: qtikk RfdnIklENtiE nrasy ALF_SPIOL : 39- 49: gtigk RfpsInvENv-E snrra ALF_STACA : 139- 148: fgtkm Rsn-IleNNk-E aiekv ALF_TRYBB : 52- 63: gscsk RfagIglSNtaE hrrqy P 16: 18.2689 28( 25) G-x-G-x(2,3)-A-x(2,3)-S-x(2)-[STV] Occurences: 28(25) ALF1_PEA : 23- 35: yiatp GkGilaAde-StgT igkrl ALF1_PEA : 23- 35: yiatp GkGil-AadeStgT igkrl ALF1_PEA : 340- 352: gkygg GsGtglAse-SlhV kdyky ALF2_PEA : 23- 35: yigtp GkGilaAde-StgT igkrl ALF2_PEA : 23- 35: yigtp GkGil-AadeStgT igkrl ALFA_HUMAN : 26- 38: rivap GkGilaAde-StgS iakrl ALFA_HUMAN : 26- 38: rivap GkGil-AadeStgS iakrl ALFA_MOUSE : 26- 38: rivap GkGilaAde-StgS iakrl ALFA_MOUSE : 26- 38: rivap GkGil-AadeStgS iakrl ALFA_RABIT : 26- 38: rivap GkGilaAde-StgS iakrl ALFA_RABIT : 26- 38: rivap GkGil-AadeStgS iakrl ALFA_RAT : 26- 38: rivap GkGilaAde-StgS iakrl ALFA_RAT : 26- 38: rivap GkGil-AadeStgS iakrl ALFB_CHICK : 27- 39: rivas GkGilaAde-SvgT mgnrl ALFB_CHICK : 27- 39: rivas GkGil-AadeSvgT mgnrl ALFB_HUMAN : 26- 38: sivan GkGilaAde-SvgT mgnrl ALFB_HUMAN : 26- 38: sivan GkGil-AadeSvgT mgnrl ALFB_RAT : 26- 38: rivan GkGilaAde-SvgT mgnrl ALFB_RAT : 26- 38: rivan GkGil-AadeSvgT mgnrl ALFC_HUMAN : 26- 38: rivap GkGilaAde-SvgS makrl ALFC_HUMAN : 26- 38: rivap GkGil-AadeSvgS makrl ALFC_MOUSE : 26- 38: rivtp GkGilaAde-SvgS makrl ALFC_MOUSE : 26- 38: rivtp GkGil-AadeSvgS makrl ALFC_PEA : 24- 36: tiasp GrGil-AmdeSnaT cgkrl ALFC_RAT : 26- 38: rivap GkGilaAde-SvgS makrl ALFC_RAT : 26- 38: rivap GkGil-AadeSvgS makrl ALFC_RAT : 344- 357: qgkye GsGdggAaaqSlyV anhay ALFC_RAT : 346- 357: kyegs GdGga-Aaq-SlyV anhay ALFC_SPIOL : 64- 76: tvasp GrGil-AmdeSnaT cgkrl ALFD_PEA : 18- 30: tiasp GrGil-AmdeSnaT cgkrl ALFH_CAEEL : 31- 43: kivqd GkGilaAde-StgT igkrl ALFH_CAEEL : 31- 43: kivqd GkGil-AadeStgT igkrl ALFR_DROME : 26- 38: kivap GkGilaAde-SgpT mgkrl ALFR_DROME : 26- 38: kivap GkGil-AadeSgpT mgkrl ALF_ARATH : 23- 35: yiatp GrGilaAde-SteT igkrf ALF_ARATH : 23- 35: yiatp GrGil-AadeSteT igkrf ALF_DROME : 26- 38: kivap GkGilaAde-SgpT mgkrl ALF_DROME : 26- 38: kivap GkGil-AadeSgpT mgkrl ALF_MAIZE : 23- 35: yigtp GkGilaAde-StgT igkrl ALF_MAIZE : 23- 35: yigtp GkGil-AadeStgT igkrl ALF_ORYSA : 23- 35: yigtp GkGilaAde-StgT igkrf ALF_ORYSA : 23- 35: yigtp GkGil-AadeStgT igkrf ALF_PLAFA : 33- 45: klvqa GkGilaAde-StqT ikkrf ALF_PLAFA : 33- 45: klvqa GkGil-AadeStqT ikkrf ALF_SPIOL : 340- 352: gkyqg GaGgadAse-SlhV kdyky ALF_STACA : 11- 24: dkikn GkGfiaAldqSggS tpkal ALF_TRYBB : 36- 48: kmtap GkGllaAde-StgS cskrf ALF_TRYBB : 36- 48: kmtap GkGll-AadeStgS cskrf Q 17: 17.9194 38( 25) V-x(0,1)-P-x-[AILV]-x(2)-D-x(0,1)-G Occurences: 38(25) ALF1_PEA : 98- 107: lqenn ViPgIkvDkG vvela ALF1_PEA : 182- 190: glvlf VePeIltD-G shdia ALF2_PEA : 99- 108: lneag VlPgIkvDkG tvela ALF2_PEA : 183- 191: glvpi VePeIlvD-G shdil ALFA_HUMAN : 186- 194: givpi VePeIlpD-G dhdlk ALFA_MOUSE : 186- 194: givpi VePeIlpD-G dhdlk ALFA_RABIT : 186- 194: givpi VePeIlpD-G dhdlk ALFA_RAT : 186- 194: givpi VePeIlpD-G dhdlk ALFB_CHICK : 187- 195: glvpi VePeVlpD-G dhdlq ALFB_HUMAN : 186- 194: glvpi VePeVipD-G dhdle ALFB_RAT : 186- 194: glvpi VePeVlpD-G dhdle ALFC_HUMAN : 112- 120: kvdkg VvPlAgtD-G etttq ALFC_HUMAN : 113- 120: vdkgv V-PlAgtD-G etttq ALFC_HUMAN : 186- 194: givpi VePeIlpD-G dhdlk ALFC_MOUSE : 113- 120: vdkgl V-PlAgtD-G etttq ALFC_MOUSE : 186- 194: givpi VePeIlpD-G dhdlk ALFC_PEA : 182- 190: glvpi VePeIllD-G ehgid ALFC_RAT : 112- 120: kvdkg VvPlAgtD-G etttq ALFC_RAT : 113- 120: vdkgv V-PlAgtD-G etttq ALFC_RAT : 186- 194: givpi VePeIlpD-G dhdlk ALFC_SPIOL : 140- 148: ieqgi V-PgIkvDkG wlplp ALFD_PEA : 176- 184: glvpi VePeIllD-G ehgid ALFH_CAEEL : 107- 115: ikqgi V-PgIklDlG vvpla ALFH_CAEEL : 190- 198: glvpi VePeVlcD-G ehdla ALFR_DROME : 186- 194: rivpi VePeVlpD-G dhdld ALF_ARATH : 98- 107: lmeng ViPgIkvDkG lvdla ALF_DROME : 186- 194: rivpi VePeVlpD-G dhdld ALF_MAIZE : 98- 107: lkegg VlPgIkvDkG tievv ALF_MAIZE : 182- 190: glvpi VePeIlvD-G phdid ALF_ORYSA : 98- 107: lkegg VlPgIkvDkG tieva ALF_ORYSA : 182- 190: glvpi VePeIlvD-G phdid ALF_PLAFA : 194- 202: rlvpi VePeIlaD-G phsie ALF_SPIOL : 98- 107: mkdgg VlPgIkvDkG tvela ALF_SPIOL : 182- 190: glvpi VePeIlvD-G thdid ALF_STACA : 96- 104: adkgi V-PfLkvDkG laeea ALF_TRYBB : 111- 120: lrrrg VvPgIktDcG leplv ALF_TRYBB : 112- 120: rrrgv V-PgIktDcG leplv ALF_TRYBB : 196- 204: glvpi VePeVmiD-G thdie R 18: 17.6108 26( 25) G-x(1,2)-F-x(1,2)-K-x-R-[ACNST] Occurences: 26(25) ALF1_PEA : 137- 145: qyyka GarFa-KwRA vlkig ALF2_PEA : 138- 146: kyyea GarFa-KwRA vlkig ALFA_HUMAN : 141- 149: qykkd GadFa-KwRC vlkig ALFA_MOUSE : 141- 149: qykkd GadFa-KwRC vlkig ALFA_RABIT : 141- 149: qykkd GadFa-KwRC vlkig ALFA_RAT : 141- 149: qykkd GadFa-KwRC vlkig ALFB_CHICK : 142- 150: qykkd GadFg-KwRA vlkis ALFB_HUMAN : 141- 149: qykkd GvdFg-KwRA vlria ALFB_RAT : 141- 149: qykkd GvdFg-KwRA vlris ALFC_HUMAN : 141- 149: qykkd GadFa-KwRC vlkis ALFC_MOUSE : 141- 149: qykkd GadFa-KwRC vlkix ALFC_PEA : 138- 146: ayyqq GarFa-KwRT vvsip ALFC_RAT : 141- 149: qykkd GadFa-KwRC vlkis ALFC_SPIOL : 178- 186: ayyqq GarFa-KwRT vvsip ALFD_PEA : 132- 140: ayyqq GarFa-KwRT vvsip ALFH_CAEEL : 145- 153: afkkg GcgFa-KwRC vlnig ALFR_DROME : 141- 149: qykkd GcdFa-KwRC vlkig ALF_ARATH : 137- 145: qyyea GgrFa-KwRA ffkig ALF_ARATH : 138- 145: yyeag Gr-Fa-KwRA ffkig ALF_DROME : 141- 149: qykkd GcdFa-KwRC vlkig ALF_MAIZE : 137- 145: kyyea GarFa-KwRA vlkig ALF_ORYSA : 137- 145: kyyea GarFa-KwRA vlkig ALF_PLAFA : 147- 155: eyyka GarFa-KwRT vlvid ALF_SPIOL : 137- 145: qyyta GarFa-KwRA vlkig ALF_STACA : 132- 140: raner Gi-FgtKmRS nilen ALF_TRYBB : 151- 159: kyyam GcrFc-KwRN vykiq S 19: 15.1802 29( 25) A-x(2,4)-L-A-x(1,2)-A Occurences: 29(25) ALF1_PEA : 163- 170: siqqn Aqg--LAryA iicqe ALF2_PEA : 164- 171: sihen Ayg--LAryA vicqe ALFA_HUMAN : 167- 174: aimen Anv--LAryA sicqq ALFA_MOUSE : 167- 174: aimen Anv--LAryA sicqq ALFA_RABIT : 167- 174: aimen Anv--LAryA sicqq ALFA_RAT : 167- 174: aimen Anv--LAryA sicqq ALFB_CHICK : 168- 175: aiqen Ant--LAryA sicqq ALFB_HUMAN : 167- 174: aiqen Ana--LAryA sicqq ALFB_RAT : 167- 174: aiqen Ana--LAryA sicqq ALFC_HUMAN : 167- 174: ailen Anv--LAryA sicqq ALFC_MOUSE : 167- 174: ailen Anv--LAryA sicqq ALFC_PEA : 162- 170: lavke Aawg-LAryA aisqd ALFC_PEA : 163- 170: avkea Awg--LAryA aisqd ALFC_RAT : 167- 174: ailen Anv--LAryA sicqq ALFC_SPIOL : 202- 210: lavke Aawg-LAryA aitqd ALFC_SPIOL : 203- 210: avkea Awg--LAryA aitqd ALFD_PEA : 156- 164: lavke Aawg-LAryA aisqd ALFD_PEA : 157- 164: avkea Awg--LAryA aisqd ALFH_CAEEL : 171- 178: gmlen Anv--LAryA sicqa ALFR_DROME : 167- 174: silen Anv--LAryA sicqs ALF_ARATH : 163- 170: siqed Arv--LAryA iicqe ALF_DROME : 167- 174: silen Anv--LAryA sicqs ALF_MAIZE : 163- 170: aidln Aqg--LAryA iicqe ALF_ORYSA : 163- 170: aihln Aqg--LAryA iicqe ALF_PLAFA : 19- 26: lpadv Aee--LAttA qklvq ALF_PLAFA : 175- 182: sihet Awg--LAryA sicqq ALF_SPIOL : 318- 326: envak AqevfLAr-A kgnse ALF_STACA : 186- 194: akdke AieanLAe-A ikael ALF_TRYBB : 177- 184: vvrfn Aet--LAryA ilsql T 20: 15.1802 30( 25) G-x(2,3)-L-A-x(0,2)-D Occurences: 30(25) ALF1_PEA : 23- 30: yiatp GkgiLAa-D estgt ALF1_PEA : 107- 115: ikvdk GvveLAgtD gettt ALF2_PEA : 23- 30: yigtp GkgiLAa-D estgt ALF2_PEA : 108- 116: ikvdk GtveLAgtD gettt ALFA_HUMAN : 26- 33: rivap GkgiLAa-D estgs ALFA_MOUSE : 26- 33: rivap GkgiLAa-D estgs ALFA_RABIT : 26- 33: rivap GkgiLAa-D estgs ALFA_RAT : 26- 33: rivap GkgiLAa-D estgs ALFB_CHICK : 27- 34: rivas GkgiLAa-D esvgt ALFB_HUMAN : 26- 33: sivan GkgiLAa-D esvgt ALFB_RAT : 26- 33: rivan GkgiLAa-D esvgt ALFC_HUMAN : 26- 33: rivap GkgiLAa-D esvgs ALFC_HUMAN : 111- 119: ikvdk GvvpLAgtD gettt ALFC_MOUSE : 26- 33: rivtp GkgiLAa-D esvgs ALFC_MOUSE : 111- 119: ikvdk GlvpLAgtD gettt ALFC_PEA : 24- 31: tiasp GrgiLAm-D esnat ALFC_RAT : 26- 33: rivap GkgiLAa-D esvgs ALFC_RAT : 111- 119: ikvdk GvvpLAgtD gettt ALFC_SPIOL : 64- 71: tvasp GrgiLAm-D esnat ALFD_PEA : 18- 25: tiasp GrgiLAm-D esnat ALFH_CAEEL : 31- 38: kivqd GkgiLAa-D estgt ALFR_DROME : 26- 33: kivap GkgiLAa-D esgpt ALF_ARATH : 23- 30: yiatp GrgiLAa-D estet ALF_DROME : 26- 33: kivap GkgiLAa-D esgpt ALF_MAIZE : 23- 30: yigtp GkgiLAa-D estgt ALF_ORYSA : 23- 30: yigtp GkgiLAa-D estgt ALF_PLAFA : 33- 40: klvqa GkgiLAa-D estqt ALF_SPIOL : 23- 30: yiatp GkviLAa-D estgt ALF_STACA : 87- 92: egkyt Gsy-LA--D kgivp ALF_TRYBB : 36- 43: kmtap GkglLAa-D estgs Number of patterns evaluated by Pratt:4127 Total running time: 7 seconds