------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 66 sequences from file ALDEHYDE_DEHYDR_CYS PATTERN CONSERVATION: CM: min Nr of Seqs to Match 66 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 25 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ALDEHYDE_DEHYDR_CYS.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ACOD_ALCEU 506 ALDA_ECOLI 478 ALDB_ECOLI 512 CROM_OCTDO 495 CROM_OMMSL 494 DHA1_BACSU 488 DHA1_ENTHI 529 DHA1_YEAST 533 DHA2_BACST 73 DHA2_BACSU 457 DHA2_YEAST 511 DHA3_BACSU 445 DHA3_YEAST 42 DHA4_RAT 484 DHA5_HUMAN 517 DHA7_HUMAN 468 DHAB_ATRHO 502 DHAB_BETVU 500 DHAB_ECOLI 489 DHAB_SPIOL 497 DHAC_CHICK 509 DHAC_HORSE 500 DHAC_HUMAN 500 DHAC_MOUSE 500 DHAC_RAT 500 DHAL_ALTAL 495 DHAL_ASPNG 497 DHAL_BACST 488 DHAL_CLAHE 496 DHAL_ECOLI 495 DHAL_EMENI 497 DHAL_PSEOL 483 DHAL_PSESP 488 DHAL_VIBCH 506 DHAM_BOVIN 520 DHAM_HORSE 500 DHAM_HUMAN 517 DHAM_RAT 519 DHAP_BOVIN 140 DHAP_HUMAN 453 DHAP_RAT 452 DHAX_PEA 508 DMPC_PSEPU 486 FTDH_RAT 902 GABD_ECOLI 482 HPCC_ECOLI 468 MMSA_BACSU 487 MMSA_BOVIN 537 MMSA_HUMAN 430 MMSA_PSEAE 496 MMSA_RAT 535 PUT2_YEAST 575 PUTA_ECOLI 1320 PUTA_KLEPN 26 PUTA_SALTY 1320 ROCA_BACSU 515 THCA_RHOSO 505 XYC1_ACICA 23 XYC2_ACICA 44 XYLC_PSEPU 487 XYLG_PSEPU 486 YBL6_YEAST 435 YDBG_ECOLI 152 YEQ3_YEAST 520 YHJ9_YEAST 644 YLQ6_CAEEL 514 Pratt run started at Thu Feb 6 18:34:52 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 7.3401 396( 66) T-x(0,2)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 7.3401 396( 66) T-x(0,2)-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 7.3401 396( 66) T-x(0,2)-V Occurences: 396(66) ACOD_ALCEU : 48- 50: tgkpf Tr-V prsgq ACOD_ALCEU : 388- 389: yyvkp T--V faghn ALDA_ECOLI : 30- 33: vvnpa TeaV isrip ALDA_ECOLI : 171- 173: lltgn Ti-V ikpse ALDA_ECOLI : 210- 211: lgrge T--V gqela ALDA_ECOLI : 227- 230: amvsm TgsV sagek ALDA_ECOLI : 245- 247: aakni Tk-V clelg ALDA_ECOLI : 471- 473: heylq Tq-V vylqs ALDA_ECOLI : 471- 474: heylq TqvV ylqs ALDB_ECOLI : 46- 48: yyqnl Tp-V tgqll ALDB_ECOLI : 81- 83: dkwah Ts-V qdraa ALDB_ECOLI : 152- 153: evdse T--V ayhfh ALDB_ECOLI : 248- 250: aftgs Te-V gqqim CROM_OCTDO : 241- 243: sftgs Te-V gklvm CROM_OCTDO : 345- 347: deeqy Tk-V ldyik CROM_OCTDO : 379- 380: yyiep T--V fsevs CROM_OCTDO : 438- 441: rimtf TnaV ntgti CROM_OCTDO : 445- 448: avntg TiwV ntfhh CROM_OCTDO : 481- 483: alrey Te-V ksviy CROM_OMMSL : 241- 243: sftgs Te-V gmlvm CROM_OMMSL : 302- 304: wsgsr Ty-V heniy CROM_OMMSL : 378- 379: fyvep T--V fsdvt CROM_OMMSL : 444- 445: amycg T--V wvnty CROM_OMMSL : 444- 447: amycg TvwV ntynh CROM_OMMSL : 480- 482: tlqey Te-V knivy DHA1_BACSU : 127- 130: egmrk TgdV ipstd DHA1_BACSU : 142- 145: dalmf TtrV plgvv DHA1_BACSU : 143- 145: almft Tr-V plgvv DHA1_BACSU : 176- 177: lvygn T--V vikpa DHA1_BACSU : 176- 178: lvygn Tv-V ikpat DHA1_BACSU : 185- 187: kpate Ta-V tcaki DHA1_BACSU : 292- 295: qkcta TsrV ivqsg DHA1_BACSU : 483- 484: ftaik T--V fvkp DHA1_BACSU : 483- 486: ftaik TvfV kp DHA1_ENTHI : 151- 152: rkqvp T--V caqlf DHA1_ENTHI : 196- 197: lacgn T--V flkms DHA1_ENTHI : 253- 255: fftgs Ty-V gklin DHA1_YEAST : 70- 72: khdnr Tq-V scsqh DHA1_YEAST : 91- 94: tlssa TrsV lfsll DHA1_YEAST : 206- 209: lplrf TgnV athie DHA1_YEAST : 227- 229: qitwr Th-V dssif DHA1_YEAST : 268- 270: aytgs Tl-V grvvs DHA1_YEAST : 295- 298: sggks TmaV fiqhd DHA1_YEAST : 305- 308: iqhdv TwaV entqf DHA1_YEAST : 330- 331: aqsgy T--V hrstl DHA1_YEAST : 430- 431: ilcvk T--V deaiq DHA1_YEAST : 465- 466: stalk T--V klfii DHA2_BACST : 52- 53: gerla T--V yegda DHA2_BACSU : 108- 109: pepyg T--V lviap DHA2_BACSU : 108- 111: pepyg TvlV iapwn DHA2_BACSU : 135- 136: iaagn T--V vlkps DHA2_BACSU : 135- 137: iaagn Tv-V lkpse DHA2_BACSU : 144- 147: kpsey TpaV sails DHA2_BACSU : 161- 164: ssvfp TdyV amaeg DHA2_BACSU : 188- 191: dyiff TgsV avgki DHA2_YEAST : 70- 72: teedi Tq-V seksq DHA2_YEAST : 86- 88: teedi Tq-V seksq DHA2_YEAST : 217- 218: laagn T--V vlkpe DHA2_YEAST : 217- 219: laagn Tv-V lkpee DHA2_YEAST : 232- 233: pltal T--V atlik DHA2_YEAST : 276- 278: aftgs Tl-V gkvvm DHA2_YEAST : 338- 339: aqsri T--V hesiy DHA2_YEAST : 414- 415: yyiqp T--V fadvt DHA2_YEAST : 478- 479: alkag T--V wvncv DHA2_YEAST : 478- 481: alkag TvwV ncvhv DHA3_BACSU : 194- 196: fftgs Tn-V gkivm DHA3_BACSU : 270- 271: agilq T--V vnagf DHA3_BACSU : 270- 272: agilq Tv-V nagfm DHA3_BACSU : 289- 292: drskf TqiV ndrnf DHA3_BACSU : 330- 331: rtisp T--V lknvt DHA3_YEAST : 6- 7: shlpm T--V piklp DHA4_RAT : 187- 189: lytgn Ta-V gkivm DHA4_RAT : 202- 204: aakhl Tp-V tlelg DHA4_RAT : 264- 265: qkikd T--V kdfyg DHA4_RAT : 319- 321: aptil Td-V dpnsk DHA4_RAT : 393- 394: vimhf T--V nslpf DHA5_HUMAN : 56- 57: kktfp T--V npttg DHA5_HUMAN : 61- 64: tvnpt TgeV ighva DHA5_HUMAN : 205- 206: latgn T--V vmkva DHA5_HUMAN : 205- 207: latgn Tv-V mkvae DHA5_HUMAN : 264- 266: aftgs Te-V ghliq DHA5_HUMAN : 325- 327: cagsr Tf-V eesiy DHA5_HUMAN : 339- 340: efler T--V ekakq DHA5_HUMAN : 401- 402: ffikp T--V fggvq DHA5_HUMAN : 467- 468: alqag T--V wvnty DHA5_HUMAN : 467- 470: alqag TvwV ntyni DHA5_HUMAN : 503- 505: glkay Te-V ktvti DHA5_HUMAN : 507- 508: ytevk T--V tikvp DHA5_HUMAN : 509- 512: evktv TikV pqkns DHA7_HUMAN : 121- 123: yplnl Tl-V plvga DHA7_HUMAN : 205- 207: aakhl Tp-V tlelg DHA7_HUMAN : 227- 228: ncdpq T--V anrva DHA7_HUMAN : 243- 245: fnagq Tc-V apdyv DHA7_HUMAN : 319- 320: ryiap T--V lvdvq DHA7_HUMAN : 319- 322: ryiap TvlV dvqem DHAB_ATRHO : 183- 185: laagc Tt-V lkpse DHAB_ATRHO : 184- 185: aagct T--V lkpse DHAB_ATRHO : 279- 281: didie Ta-V ewtlf DHAB_BETVU : 181- 183: laagc Ta-V lkpse DHAB_ECOLI : 36- 37: gnvla T--V qaagr DHAB_ECOLI : 100- 103: kayse TstV divtg DHAB_ECOLI : 102- 103: ysets T--V divtg DHAB_ECOLI : 132- 135: iplre TsfV ytrre DHAB_ECOLI : 227- 230: akvsf TggV asgkk DHAB_ECOLI : 289- 291: vctng Tr-V fvpak DHAB_ECOLI : 371- 372: awvap T--V ftdcs DHAB_ECOLI : 381- 383: csddm Ti-V reeif DHAB_ECOLI : 473- 475: tlqsy Tq-V ksiqv DHAB_SPIOL : 178- 180: laagc Ta-V lkpse DHAB_SPIOL : 375- 377: yyiep Ti-V tdist DHAC_CHICK : 152- 153: kihgr T--V pmdgn DHAC_CHICK : 197- 198: lccgn T--V vvkpa DHAC_CHICK : 197- 199: lccgn Tv-V vkpae DHAC_CHICK : 197- 200: lccgn TvvV kpaeq DHAC_CHICK : 256- 258: sftgs Te-V gklik DHAC_CHICK : 393- 394: yfiqp T--V fsnvt DHAC_CHICK : 459- 460: alqag T--V wvncy DHAC_CHICK : 459- 462: alqag TvwV ncysa DHAC_CHICK : 495- 497: glqey Te-V ktvti DHAC_CHICK : 499- 500: ytevk T--V tikip DHAC_HORSE : 188- 189: lscgn T--V vvkpa DHAC_HORSE : 188- 190: lscgn Tv-V vkpae DHAC_HORSE : 188- 191: lscgn TvvV kpaeq DHAC_HORSE : 247- 249: aftgs Te-V gklik DHAC_HORSE : 336- 339: lgnpl TpgV sqgpq DHAC_HORSE : 384- 385: yfiqp T--V fsnvs DHAC_HORSE : 441- 442: ldkai T--V saalq DHAC_HORSE : 450- 451: alqag T--V wvncy DHAC_HORSE : 450- 453: alqag TvwV ncygv DHAC_HORSE : 486- 488: gfhey Te-V ktvtv DHAC_HORSE : 490- 491: ytevk T--V tvkis DHAC_HORSE : 490- 493: ytevk TvtV kisqk DHAC_HORSE : 492- 493: evktv T--V kisqk DHAC_HUMAN : 188- 189: lscgn T--V vvkpa DHAC_HUMAN : 188- 190: lscgn Tv-V vkpae DHAC_HUMAN : 188- 191: lscgn TvvV kpaeq DHAC_HUMAN : 247- 249: aftgs Te-V gklik DHAC_HUMAN : 336- 339: lgnpl TpgV tqgpq DHAC_HUMAN : 384- 385: yfvqp T--V fsnvt DHAC_HUMAN : 450- 451: alqag T--V wvncy DHAC_HUMAN : 450- 453: alqag TvwV ncygv DHAC_HUMAN : 486- 488: gfhey Te-V ktvtv DHAC_HUMAN : 490- 491: ytevk T--V tvkis DHAC_HUMAN : 490- 493: ytevk TvtV kisqk DHAC_HUMAN : 492- 493: evktv T--V kisqk DHAC_MOUSE : 44- 47: vlnpa TeeV ichve DHAC_MOUSE : 188- 189: lscgn T--V vvkpa DHAC_MOUSE : 188- 190: lscgn Tv-V vkpae DHAC_MOUSE : 188- 191: lscgn TvvV kpaeq DHAC_MOUSE : 247- 249: aftgs Tq-V gklik DHAC_MOUSE : 384- 385: ffvqp T--V fsnvt DHAC_MOUSE : 441- 442: ldkai T--V ssalq DHAC_MOUSE : 490- 491: ytelk T--V amkis DHAC_RAT : 44- 47: vinpa TeeV ichve DHAC_RAT : 122- 124: aylld Te-V sikal DHAC_RAT : 188- 189: lscgn T--V ivkpa DHAC_RAT : 188- 191: lscgn TviV kpaeq DHAC_RAT : 247- 249: sftgs Te-V gklik DHAC_RAT : 384- 385: ffvqp T--V fsnvt DHAC_RAT : 441- 442: ldrai T--V ssalq DHAC_RAT : 450- 451: alqag T--V wvncy DHAC_RAT : 450- 453: alqag TvwV ncylt DHAC_RAT : 458- 461: vncyl TlsV qcpfg DHAC_RAT : 490- 491: ytelk T--V amkis DHAL_ALTAL : 2- 4: m Ts-V klstp DHAL_ALTAL : 34- 37: avdgk TfdV inpst DHAL_ALTAL : 42- 45: vinps TeeV icsvq DHAL_ALTAL : 183- 184: iatgn T--V vlkta DHAL_ALTAL : 183- 185: iatgn Tv-V lktae DHAL_ALTAL : 242- 243: aftgs T--V vgrqi DHAL_ALTAL : 242- 244: aftgs Tv-V grqim DHAL_ALTAL : 444- 445: alrag T--V wvnsy DHAL_ALTAL : 444- 447: alrag TvwV nsynt DHAL_ALTAL : 482- 485: dnyiq TktV sirlg DHAL_ALTAL : 484- 485: yiqtk T--V sirlg DHAL_ASPNG : 61- 63: ekdvd Ta-V aaark DHAL_ASPNG : 185- 186: iatgn T--V vikta DHAL_ASPNG : 185- 187: iatgn Tv-V iktae DHAL_ASPNG : 244- 246: aftgs Tl-V grtil DHAL_ASPNG : 363- 364: kdaga T--V avgge DHAL_ASPNG : 363- 366: kdaga TvaV ggerh DHAL_ASPNG : 381- 382: yfiqp T--V ftdvt DHAL_ASPNG : 384- 386: qptvf Td-V tsdmk DHAL_ASPNG : 403- 404: fgpvv T--V qkfkd DHAL_ASPNG : 430- 433: aagih TkdV ttair DHAL_ASPNG : 447- 448: alrag T--V wvnsy DHAL_ASPNG : 447- 450: alrag TvwV nsynl DHAL_BACST : 142- 145: egllf TtrV plgvv DHAL_BACST : 143- 145: gllft Tr-V plgvv DHAL_BACST : 176- 177: lvygn T--V vlkpa DHAL_BACST : 176- 178: lvygn Tv-V lkpas DHAL_BACST : 185- 187: kpase Ta-V taakv DHAL_BACST : 236- 237: ftgsn T--V gkqvg DHAL_BACST : 292- 295: qkcta TsrV fiere DHAL_BACST : 339- 340: esqfh T--V lsyie DHAL_BACST : 448- 451: kvnae TagV efqap DHAL_BACST : 483- 484: ftsik T--V fvka DHAL_BACST : 483- 486: ftsik TvfV ka DHAL_CLAHE : 2- 4: m Ts-V qletp DHAL_CLAHE : 34- 37: gqegk TfdV inpsd DHAL_CLAHE : 47- 49: desvi Tq-V heate DHAL_CLAHE : 135- 138: wadki TgkV idttp DHAL_CLAHE : 183- 184: iacgn T--V vlkta DHAL_CLAHE : 183- 185: iacgn Tv-V lktae DHAL_CLAHE : 242- 243: aftgs T--V vgrti DHAL_CLAHE : 242- 244: aftgs Tv-V grtil DHAL_CLAHE : 361- 362: kdaga T--V etggs DHAL_CLAHE : 445- 446: alkag T--V wvnty DHAL_CLAHE : 445- 448: alkag TvwV ntynt DHAL_CLAHE : 483- 486: anytq TktV sirlg DHAL_CLAHE : 485- 486: ytqtk T--V sirlg DHAL_ECOLI : 39- 40: netfe T--V dpvtq DHAL_ECOLI : 382- 385: aaigp TifV dvdpn DHAL_ECOLI : 460- 461: ndgdm T--V pfggy DHAL_EMENI : 10- 12: fttie Tp-V ikyeq DHAL_EMENI : 35- 38: gvegk TfqV inpsn DHAL_EMENI : 48- 50: nekvi Ts-V heate DHAL_EMENI : 184- 185: vaagn T--V vlkta DHAL_EMENI : 184- 186: vaagn Tv-V lktaq DHAL_EMENI : 243- 245: aftgs Tl-V gptil DHAL_EMENI : 362- 363: kkaga T--V atggd DHAL_EMENI : 380- 381: yfiqp T--V ftdvt DHAL_EMENI : 383- 385: qptvf Td-V tsdmk DHAL_EMENI : 429- 432: aaavh TknV ntair DHAL_EMENI : 446- 447: alkag T--V winny DHAL_EMENI : 486- 487: ytqik T--V hyrlg DHAL_PSEOL : 343- 344: rlvvp T--V lsnvt DHAL_PSEOL : 468- 471: lfppy TkkV kqlig DHAL_PSEOL : 478- 479: qligi T--V kyls DHAL_PSESP : 151- 152: trlsk T--V replg DHAL_PSESP : 378- 380: yflpi Tf-V dlpde DHAL_PSESP : 441- 444: lqqps TrsV wsttg DHAL_PSESP : 482- 483: fttqk T--V iiqqq DHAL_VIBCH : 10- 13: ipnse TstV hfkdv DHAL_VIBCH : 12- 13: nsets T--V hfkdv DHAL_VIBCH : 39- 42: eyfsn TspV nglvf DHAL_VIBCH : 75- 78: eswst TsaV ersni DHAL_VIBCH : 184- 185: laagc T--V vlkpa DHAL_VIBCH : 184- 186: laagc Tv-V lkpae DHAL_VIBCH : 193- 195: kpaeq Tp-V silfl DHAL_VIBCH : 426- 427: hland T--V yglga DHAM_BOVIN : 25- 28: llsaa TqaV ptpnq DHAM_BOVIN : 59- 60: kktfp T--V npstg DHAM_BOVIN : 64- 67: tvnps TgdV ichva DHAM_BOVIN : 205- 208: gpala TgnV vvmkv DHAM_BOVIN : 267- 269: aftgs Te-V ghliq DHAM_BOVIN : 328- 330: cagsr Tf-V qediy DHAM_BOVIN : 404- 405: yfiqp T--V fgdlq DHAM_BOVIN : 470- 471: alqag T--V wvncy DHAM_BOVIN : 470- 473: alqag TvwV ncydv DHAM_BOVIN : 506- 508: glqay Te-V ktvtv DHAM_BOVIN : 510- 511: ytevk T--V tvrvp DHAM_BOVIN : 510- 513: ytevk TvtV rvpqk DHAM_BOVIN : 512- 513: evktv T--V rvpqk DHAM_BOVIN : 512- 515: evktv TvrV pqkns DHAM_HORSE : 5- 8: aaaa TqaV papnq DHAM_HORSE : 39- 40: kktfp T--V npstg DHAM_HORSE : 44- 47: tvnps TgeV icqva DHAM_HORSE : 185- 188: gpala TgnV vvmkv DHAM_HORSE : 247- 249: aftgs Te-V ghliq DHAM_HORSE : 308- 310: gagsr Tf-V qedvy DHAM_HORSE : 384- 385: yfiqp T--V fgdvq DHAM_HORSE : 450- 451: alqag T--V wincy DHAM_HORSE : 486- 488: glqay Te-V ktvti DHAM_HORSE : 490- 491: ytevk T--V tikvp DHAM_HORSE : 492- 495: evktv TikV pqkns DHAM_HUMAN : 22- 25: lsaaa TqaV papnq DHAM_HUMAN : 56- 57: rktfp T--V npstg DHAM_HUMAN : 61- 64: tvnps TgeV icqva DHAM_HUMAN : 202- 205: gpala TgnV vvmkv DHAM_HUMAN : 325- 327: cagsr Tf-V qediy DHAM_HUMAN : 401- 402: yfiqp T--V fgdvq DHAM_HUMAN : 467- 468: alqag T--V wvncy DHAM_HUMAN : 467- 470: alqag TvwV ncydv DHAM_HUMAN : 503- 505: glqay Te-V ktvtv DHAM_HUMAN : 507- 508: ytevk T--V tvkvp DHAM_HUMAN : 507- 510: ytevk TvtV kvpqk DHAM_HUMAN : 509- 510: evktv T--V kvpqk DHAM_HUMAN : 509- 512: evktv TvkV pqkns DHAM_RAT : 24- 27: lsaaa TsaV papnq DHAM_RAT : 58- 59: kktfp T--V npstg DHAM_RAT : 63- 66: tvnps TgeV icqva DHAM_RAT : 204- 207: gpala TgnV vvmkv DHAM_RAT : 266- 268: aftgs Te-V ghliq DHAM_RAT : 327- 329: cagsr Tf-V qedvy DHAM_RAT : 403- 404: yfiqp T--V fgdvk DHAM_RAT : 469- 470: alqag T--V wincy DHAM_RAT : 505- 507: glqay Te-V ktvtv DHAM_RAT : 509- 510: ytevk T--V tvkvp DHAM_RAT : 509- 512: ytevk TvtV kvpqk DHAM_RAT : 511- 512: evktv T--V kvpqk DHAM_RAT : 511- 514: evktv TvkV pqkns DHAP_BOVIN : 29- 31: mnsgq Tc-V apdyi DHAP_BOVIN : 108- 110: aptil Td-V dpesp DHAP_HUMAN : 190- 192: lytgs Tg-V gkiim DHAP_HUMAN : 205- 207: aakhl Tp-V tlelg DHAP_HUMAN : 243- 245: mnsgq Tc-V apdyi DHAP_HUMAN : 322- 324: aptil Td-V dpqsp DHAP_RAT : 6- 7: ssisd T--V krare DHAP_RAT : 189- 191: mytgs Ta-V gkivm DHAP_RAT : 204- 206: aakhl Tp-V tlelg DHAP_RAT : 242- 244: mnsgq Tc-V apdyi DHAP_RAT : 318- 321: ryiap TilV dvdpq DHAP_RAT : 395- 396: vivhi T--V ptlpf DHAX_PEA : 35- 36: kangp T--V hsvnp DHAX_PEA : 43- 46: svnps TnqV iasvt DHAX_PEA : 74- 75: aktwr T--V papkr DHAX_PEA : 184- 185: lvggn T--V vwkga DHAX_PEA : 184- 186: lvggn Tv-V wkgap DHAX_PEA : 197- 198: ttpli T--V avtkl DHAX_PEA : 197- 200: ttpli TvaV tklia DHAX_PEA : 255- 256: alvqq T--V sqrfg DHAX_PEA : 282- 285: ddadi TlaV rsiff DHAX_PEA : 337- 339: pleeg Tl-V gplht DHAX_PEA : 382- 384: nfvvp Ti-V eisad DMPC_PSEPU : 162- 165: plllm TwkV gpala DMPC_PSEPU : 174- 175: lacgn T--V vvkps DMPC_PSEPU : 174- 176: lacgn Tv-V vkpse DMPC_PSEPU : 174- 177: lacgn TvvV kpsee DMPC_PSEPU : 352- 353: vdega T--V vtggg DMPC_PSEPU : 352- 354: vdega Tv-V tgggv FTDH_RAT : 159- 160: vlpdd T--V stlyn FTDH_RAT : 521- 523: tlalk Th-V gmsiq FTDH_RAT : 593- 594: vaagn T--V vikpa FTDH_RAT : 593- 595: vaagn Tv-V ikpaq FTDH_RAT : 652- 654: gftgs Te-V gkhim FTDH_RAT : 771- 773: vkega Tl-V cggnq FTDH_RAT : 789- 790: fffqp T--V ftdve FTDH_RAT : 792- 794: qptvf Td-V edhmy FTDH_RAT : 857- 858: klqag T--V finty FTDH_RAT : 866- 868: ntynk Td-V aapfg FTDH_RAT : 897- 898: ylrik T--V tfey GABD_ECOLI : 176- 178: laagc Tm-V lkpas GABD_ECOLI : 288- 290: rnagq Tc-V canrl GABD_ECOLI : 371- 374: nffqp TilV dvpan HPCC_ECOLI : 26- 29: ttnpa TgeV ladva HPCC_ECOLI : 96- 99: lpihq TknV lipra HPCC_ECOLI : 122- 125: qmngk TypV ddkml HPCC_ECOLI : 133- 135: kmlny Tl-V qpvgv HPCC_ECOLI : 155- 158: pfmta TwkV apcla HPCC_ECOLI : 167- 169: lalgi Ta-V lkmse HPCC_ECOLI : 314- 316: ptdpn Tq-V galis HPCC_ECOLI : 366- 367: nflrp T--V ladvd HPCC_ECOLI : 415- 418: asyiw TqdV skvlr HPCC_ECOLI : 437- 440: mvfvn TqfV rdlrh MMSA_BACSU : 31- 34: vvnpa TkeV lcqvp MMSA_BACSU : 132- 134: lasia Td-V eaany MMSA_BACSU : 257- 259: gaknh Ti-V lndan MMSA_BACSU : 268- 269: anled T--V tnivg MMSA_BACSU : 270- 273: ledtv TniV gaafg MMSA_BACSU : 291- 292: acavv T--V eegia MMSA_BOVIN : 41- 42: sssvp T--V klfid MMSA_BOVIN : 66- 69: ihnpa TneV igrvp MMSA_HUMAN : 217- 219: cmals Ta-V lvgea MMSA_PSEAE : 60- 62: aswke Tp-V serar MMSA_PSEAE : 123- 124: llmge T--V envar MMSA_PSEAE : 181- 183: eqvpl Ts-V rlael MMSA_PSEAE : 473- 476: rfyte TktV tarwf MMSA_PSEAE : 475- 476: ytetk T--V tarwf MMSA_RAT : 39- 40: sssvp T--V klfid MMSA_RAT : 64- 67: ihnpa TneV vgrvp MMSA_RAT : 322- 324: cmals Ta-V lvgea PUT2_YEAST : 230- 231: almgn T--V vwkps PUT2_YEAST : 230- 232: almgn Tv-V wkpsq PUT2_YEAST : 248- 249: nyllm T--V leeag PUT2_YEAST : 271- 274: dpvqv TdqV ladkd PUT2_YEAST : 289- 291: hftgs Tn-V fksly PUT2_YEAST : 443- 444: wfvgp T--V ikakr PUT2_YEAST : 465- 466: fgpil T--V yeypd PUT2_YEAST : 522- 525: indkc TgaV vsqqw PUTA_ECOLI : 5- 8: mgtt TmgV kldda PUTA_ECOLI : 104- 107: yrrpe TeaV smlle PUTA_ECOLI : 457- 460: gypvy TrkV ytdvs PUTA_ECOLI : 462- 464: trkvy Td-V sylac PUTA_ECOLI : 525- 528: lyeqv TgkV adakl PUTA_ECOLI : 564- 567: engan TsfV nriad PUTA_ECOLI : 586- 588: vadpv Ta-V eklaq PUTA_ECOLI : 837- 838: pgrge T--V gaqlt PUTA_ECOLI : 857- 859: mftgs Te-V atllq PUTA_ECOLI : 898- 901: dssal TeqV vvdvl PUTA_ECOLI : 1000- 1002: ewqsg Tf-V aptli PUTA_ECOLI : 1049- 1052: sgygl TlgV htrid PUTA_ECOLI : 1278- 1280: aardg Ti-V svqgf PUTA_KLEPN : 5- 8: mgtt TmgV kldda PUTA_SALTY : 5- 8: mgtt TmgV kldda PUTA_SALTY : 104- 107: wrrpe TdaV smlme PUTA_SALTY : 457- 460: gypvy TrkV ytdvs PUTA_SALTY : 462- 464: trkvy Td-V sylac PUTA_SALTY : 525- 528: lyeqv TgkV adgkl PUTA_SALTY : 564- 567: engan TsfV nriad PUTA_SALTY : 661- 663: adgem Tp-V inpae PUTA_SALTY : 837- 838: pgrge T--V gaqlt PUTA_SALTY : 857- 859: mftgs Te-V atllq PUTA_SALTY : 898- 901: dssal TeqV vvdvl PUTA_SALTY : 1000- 1002: ewqtg Tf-V mptli PUTA_SALTY : 1049- 1052: sgygl TlgV htrid PUTA_SALTY : 1267- 1268: sdklr T--V ceava ROCA_BACSU : 2- 3: m T--V tyahe ROCA_BACSU : 191- 193: aimag Ta-V aaivt ROCA_BACSU : 251- 254: vehpk TrfV sftgs ROCA_BACSU : 292- 293: mggkd T--V lvdkd ROCA_BACSU : 292- 295: mggkd TvlV dkdad ROCA_BACSU : 346- 349: valtk TltV gnped ROCA_BACSU : 348- 349: ltktl T--V gnped THCA_RHOSO : 40- 42: yfenp Tp-V tgqnf THCA_RHOSO : 75- 77: pawgk Ts-V aerai THCA_RHOSO : 146- 147: einsd T--V ayhfh THCA_RHOSO : 193- 195: kpaeq Tp-V silhl THCA_RHOSO : 325- 328: maair TkaV rqgdp THCA_RHOSO : 388- 389: yyvqp T--V ftgnn XYC1_ACICA : 20- 21: hifqg T--V vk XYC1_ACICA : 20- 22: hifqg Tv-V k XYC2_ACICA : 23- 26: qsaqd TysV ievat XYC2_ACICA : 31- 34: vieva TgxV lgeig XYLC_PSEPU : 41- 43: dilgi Tg-V anged XYLC_PSEPU : 184- 186: kpdlq Ta-V tggal XYLC_PSEPU : 234- 236: sftgs Tq-V grlig XYLC_PSEPU : 367- 368: ryyqa T--V imdvk XYLC_PSEPU : 391- 392: pvapi T--V fdsie XYLC_PSEPU : 431- 434: akrln TgmV hindq XYLG_PSEPU : 62- 63: pwgkm T--V aerae XYLG_PSEPU : 162- 165: plllm TwkV gpala XYLG_PSEPU : 291- 294: qvclg TerV yverp XYLG_PSEPU : 352- 353: vddga T--V vtggg XYLG_PSEPU : 352- 354: vddga Tv-V tgggv XYLG_PSEPU : 424- 427: asaiw TenV rrahr YBL6_YEAST : 31- 34: kwvkg TdeV fevvd YBL6_YEAST : 183- 184: lavgc T--V vikpd YBL6_YEAST : 183- 185: lavgc Tv-V ikpds YBL6_YEAST : 244- 246: tftgs Tn-V gkilm YBL6_YEAST : 297- 299: rglgq Tc-V canrl YBL6_YEAST : 389- 392: shvps TaiV skeet YDBG_ECOLI : 114- 116: aadhl Tr-V tlelg YEQ3_YEAST : 60- 63: skqkk TfdV inpsn YEQ3_YEAST : 73- 75: neeki Tt-V ykame YEQ3_YEAST : 74- 75: eekit T--V ykame YEQ3_YEAST : 209- 210: latgn T--V vlkpa YEQ3_YEAST : 209- 211: latgn Tv-V lkpae YEQ3_YEAST : 281- 282: kvaad T--V kkvtl YEQ3_YEAST : 333- 334: iyiqd T--V yeevl YEQ3_YEAST : 404- 405: yfvkp T--V fadvk YEQ3_YEAST : 426- 427: fgpiv T--V skfst YEQ3_YEAST : 432- 433: vskfs T--V devia YEQ3_YEAST : 470- 471: rvkag T--V winty YEQ3_YEAST : 508- 511: snytq TksV riaid YHJ9_YEAST : 17- 18: nhlns T--V qayfn YHJ9_YEAST : 50- 53: kligi TtlV asift YHJ9_YEAST : 51- 53: ligit Tl-V asift YHJ9_YEAST : 58- 61: vasif TlyV lvkii YHJ9_YEAST : 349- 351: aaksl Tp-V vvelg YHJ9_YEAST : 349- 352: aaksl TpvV velgg YHJ9_YEAST : 479- 482: hyfqp TllV dvtpe YHJ9_YEAST : 543- 546: anslq TgnV aindf YHJ9_YEAST : 553- 556: indfa TfyV cqlpf YLQ6_CAEEL : 204- 207: taiav TklV eevlv YLQ6_CAEEL : 291- 292: mvvpa T--V faavg YLQ6_CAEEL : 387- 389: nfvlp Ti-V tglkh Number of patterns evaluated by Pratt:1 Total running time: 2 seconds