------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file ALANINE_RACEMASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ALANINE_RACEMASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ALR1_ECOLI 358 ALR1_SALTY 359 ALR2_ECOLI 356 ALR2_SALTY 356 ALRX_PSEPU 16 ALR_BACST 386 ALR_BACSU 389 ALR_HAEIN 360 ALR_MYCLE 388 ALR_PSEFL 25 Pratt run started at Thu Feb 6 18:34:33 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 11.5102 24( 10) A-x(0,2)-A-x(3)-G 2: 11.5102 25( 10) A-x(1,2)-L-x(3,4)-A 3: 11.5102 23( 10) A-x(0,1)-L-x(3,4)-A 4: 11.5102 24( 10) L-x(1,2)-A-x(0,1)-L 5: 11.5102 18( 10) L-x(0,1)-A-x(0,1)-L 6: 11.0102 31( 10) A-x(0,1)-A-x(1,3)-G 7: 11.0102 16( 10) A-x(1,2)-L-x(0,2)-D 8: 8.3401 19( 10) I-x-L 9: 8.3401 47( 10) A-x(3)-G 10: 8.3401 47( 10) A-x-A 11: 8.3401 45( 10) L-x-A 12: 7.8401 30( 10) I-x(0,1)-G 13: 7.8401 41( 10) A-x(0,1)-V 14: 7.3401 91( 10) A-x(1,3)-G 15: 7.3401 49( 10) D-x(0,2)-A 16: 7.3401 74( 10) A-x(0,2)-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 15.1477 11( 10) L-x-A-[GILV]-x-[DEHKR]-[ANV] B 2: 13.1009 14( 10) A-[DENR]-A-x(3)-[AGL] C 3: 11.5102 24( 10) A-x(0,2)-A-x(3)-G D 4: 11.5102 25( 10) A-x(1,2)-L-x(3,4)-A E 5: 11.5102 23( 10) A-x(0,1)-L-x(3,4)-A F 6: 11.5102 24( 10) L-x(1,2)-A-x(0,1)-L G 7: 11.5102 18( 10) L-x(0,1)-A-x(0,1)-L H 8: 11.0102 31( 10) A-x(0,1)-A-x(1,3)-G I 9: 11.0102 16( 10) A-x(1,2)-L-x(0,2)-D J 10: 10.0020 21( 10) D-x(0,2)-A-x(3)-[AGN] K 11: 8.3401 19( 10) I-x-L L 12: 8.3401 47( 10) A-x(3)-G M 13: 7.8401 30( 10) I-x(0,1)-G N 14: 7.8401 41( 10) A-x(0,1)-V O 15: 7.3401 91( 10) A-x(1,3)-G P 16: 7.3401 74( 10) A-x(0,2)-D Best patterns with alignements: fitness hits(seqs) Pattern A 1: 15.1477 11( 10) L-x-A-[GILV]-x-[DEHKR]-[ANV] Occurences: 11(10) ALR1_ECOLI : 105- 111: hneeq LaALeEA sldep ALR1_SALTY : 29- 35: apask LvAVvKA naygh ALR2_ECOLI : 245- 251: igvqt LkAGeRV gyggr ALR2_SALTY : 245- 251: igvqt LsAGeRV gyggg ALRX_PSEPU : 1- 7: LtAVlKA daygx ALR_BACST : 14- 20: waevd LdAIyDN venlr ALR_BACSU : 16- 22: waeid LsAIkEN vsnmk ALR_BACSU : 36- 42: gehvh LmAVeKA naygh ALR_HAEIN : 108- 114: hnheq LdALkRA nlpsp ALR_MYCLE : 154- 160: qypam LtALqRA vveda ALR_PSEFL : 10- 16: ralid LqALrHN yqlaa B 2: 13.1009 14( 10) A-[DENR]-A-x(3)-[AGL] Occurences: 14(10) ALR1_ECOLI : 35- 41: vavvk ANAyghG lleta ALR1_ECOLI : 52- 58: rtlpd ADAfxvA rleea ALR1_SALTY : 35- 41: vavvk ANAyghG lleta ALR1_SALTY : 52- 58: rtlpd ADAfgvA rleea ALR2_ECOLI : 36- 42: wsvvk ANAyghG ieriw ALR2_SALTY : 36- 42: wsvvk ANAyghG iervw ALRX_PSEPU : 7- 13: tavlk ADAygxG igl ALR_BACST : 40- 46: mavvk ANAyghG dvqva ALR_BACST : 90- 96: gasrp ADAalaA qqria ALR_BACSU : 42- 48: mavek ANAyghG daeta ALR_HAEIN : 37- 43: iavvk ANAyghG vvfva ALR_MYCLE : 14- 20: rpgvl AEAvvdL gaidy ALR_MYCLE : 45- 51: mvvlk ADAyghG atqva ALR_PSEFL : 4- 10: mxp ARAlidL qalrh C 3: 11.5102 24( 10) A-x(0,2)-A-x(3)-G Occurences: 24(10) ALR1_ECOLI : 35- 41: vavvk An-AyghG lleta ALR1_SALTY : 35- 41: vavvk An-AyghG lleta ALR2_ECOLI : 36- 42: wsvvk An-AyghG ieriw ALR2_ECOLI : 333- 340: kiddv AaaAgtvG yelmc ALR2_ECOLI : 334- 340: iddva Aa-AgtvG yelmc ALR2_ECOLI : 335- 340: ddvaa A--AgtvG yelmc ALR2_SALTY : 36- 42: wsvvk An-AyghG iervw ALR2_SALTY : 333- 340: kvddv AsaAgtlG yellc ALR2_SALTY : 335- 340: ddvas A--AgtlG yellc ALRX_PSEPU : 7- 13: tavlk Ad-AygxG igl ALR_BACST : 40- 46: mavvk An-AyghG dvqva ALR_BACST : 51- 58: gdvqv ArtAlerG pppav ALR_BACST : 113- 119: dwlee As-AlysG pfpih ALR_BACSU : 42- 48: mavek An-AyghG daeta ALR_BACSU : 53- 60: gdaet AkaAldaG ascla ALR_BACSU : 55- 60: aetak A--AldaG ascla ALR_HAEIN : 37- 43: iavvk An-AyghG vvfva ALR_MYCLE : 45- 51: mvvlk Ad-AyghG atqva ALR_MYCLE : 56- 63: gatqv AlaAlaaG aaelg ALR_MYCLE : 58- 63: tqval A--AlaaG aaelg ALR_MYCLE : 61- 68: alaal AagAaelG vatvd ALR_MYCLE : 62- 68: laala Ag-AaelG vatvd ALR_MYCLE : 198- 204: faall Aq-AheqG lrfev ALR_PSEFL : 20- 25: hnyql A--AeviG D 4: 11.5102 25( 10) A-x(1,2)-L-x(3,4)-A Occurences: 25(10) ALR1_ECOLI : 46- 54: gllet ArtLpdadA fxvar ALR1_ECOLI : 84- 92: egffd ArdLptisA qhfht ALR1_SALTY : 46- 54: gllet ArtLpdadA fgvar ALR1_SALTY : 84- 92: egffd AadLptisA qclht ALR1_SALTY : 85- 92: gffda Ad-LptisA qclht ALR2_ECOLI : 7- 13: trpiq As-Ldlq-A lkqnl ALR2_ECOLI : 57- 64: atdgf Al-LnleeA itlre ALR2_ECOLI : 193- 201: slsns AatLwhpeA hfdwv ALR2_ECOLI : 194- 201: lsnsa At-LwhpeA hfdwv ALR2_SALTY : 57- 64: atdgf Am-LnleeA itlre ALR2_SALTY : 186- 193: eglqc AysLsns-A atlwh ALR2_SALTY : 186- 194: eglqc AysLsnsaA tlwhp ALR2_SALTY : 193- 201: slsns AatLwhpqA hydwv ALR2_SALTY : 194- 201: lsnsa At-LwhpqA hydwv ALRX_PSEPU : 3- 9: lt Av-Lkad-A ygxgi ALR_BACST : 64- 71: pppav Af-LdealA lrekg ALR_BACST : 79- 86: ekgie ApiLvlg-A srpad ALR_BACSU : 55- 61: aetak Aa-Ldag-A sclam ALR_BACSU : 82- 89: kkglk ApiLvlg-A vppey ALR_HAEIN : 61- 68: dcfgv Ar-LeealA lrsng ALR_MYCLE : 58- 64: tqval Aa-Laag-A aelgv ALR_MYCLE : 58- 65: tqval Aa-LaagaA elgva ALR_MYCLE : 194- 200: qgkrf Aa-Llaq-A heqgl ALR_MYCLE : 210- 217: lrfev Ah-LsnssA tmsrp ALR_MYCLE : 286- 293: hdtnl Al-LpvgyA dgvfr ALR_MYCLE : 341- 348: aegde Ai-LfgpgA rgept ALR_PSEFL : 4- 12: mxp AraLidlqA lrhny E 5: 11.5102 23( 10) A-x(0,1)-L-x(3,4)-A Occurences: 23(10) ALR1_ECOLI : 63- 68: arlee A-Lrlr-A ggitk ALR1_SALTY : 63- 68: arlee A-Lrlr-A ggitq ALR1_SALTY : 85- 92: gffda AdLptisA qclht ALR2_ECOLI : 7- 13: trpiq AsLdlq-A lkqnl ALR2_ECOLI : 57- 64: atdgf AlLnleeA itlre ALR2_ECOLI : 194- 201: lsnsa AtLwhpeA hfdwv ALR2_SALTY : 57- 64: atdgf AmLnleeA itlre ALR2_SALTY : 194- 201: lsnsa AtLwhpqA hydwv ALRX_PSEPU : 3- 9: lt AvLkad-A ygxgi ALR_BACST : 64- 71: pppav AfLdealA lrekg ALR_BACSU : 55- 61: aetak AaLdag-A sclam ALR_BACSU : 56- 61: etaka A-Ldag-A sclam ALR_HAEIN : 61- 68: dcfgv ArLeealA lrsng ALR_MYCLE : 56- 61: gatqv A-Laal-A agaae ALR_MYCLE : 56- 62: gatqv A-LaalaA gaael ALR_MYCLE : 58- 64: tqval AaLaag-A aelgv ALR_MYCLE : 58- 65: tqval AaLaagaA elgva ALR_MYCLE : 59- 64: qvala A-Laag-A aelgv ALR_MYCLE : 59- 65: qvala A-LaagaA elgva ALR_MYCLE : 75- 80: atvde A-Lalr-A dgisa ALR_MYCLE : 194- 200: qgkrf AaLlaq-A heqgl ALR_MYCLE : 195- 200: gkrfa A-Llaq-A heqgl ALR_MYCLE : 210- 217: lrfev AhLsnssA tmsrp ALR_MYCLE : 286- 293: hdtnl AlLpvgyA dgvfr ALR_MYCLE : 341- 348: aegde AiLfgpgA rgept ALR_PSEFL : 6- 12: mxpar A-LidlqA lrhny F 6: 11.5102 24( 10) L-x(1,2)-A-x(0,1)-L Occurences: 24(10) ALR1_ECOLI : 60- 64: fxvar LeeA-L rlrag ALR1_ECOLI : 105- 108: hneeq La-A-L eeasl ALR1_ECOLI : 108- 113: eqlaa LeeAsL depvt ALR1_SALTY : 60- 64: fgvar LeeA-L rlrag ALR1_SALTY : 105- 108: hnqeq La-A-L eavel ALR2_ECOLI : 11- 14: qasld Lq-A-L kqnls ALR2_ECOLI : 106- 109: hsnwq Lk-A-L qnarl ALR2_ECOLI : 109- 114: wqlka LqnArL kapld ALR2_ECOLI : 114- 118: lqnar Lk-ApL diylk ALR2_ECOLI : 343- 347: tvgye LmcA-L avrvp ALR2_SALTY : 106- 109: hsnwq Lk-A-L qnarl ALR2_SALTY : 109- 114: wqlka LqnArL napld ALR2_SALTY : 114- 118: lqnar Ln-ApL diyvk ALRX_PSEPU : 1- 5: Lt-AvL kaday ALR_BACST : 66- 70: pavaf LdeA-L alrek ALR_BACSU : 64- 69: agasc LamAiL deais ALR_BACSU : 189- 193: erfke Li-ApL plknl ALR_HAEIN : 63- 67: fgvar LeeA-L alrsn ALR_HAEIN : 108- 111: hnheq Ld-A-L kranl ALR_HAEIN : 111- 116: eqlda LkrAnL pspik ALR_HAEIN : 133- 137: tgmhr LgvA-L devdy ALR_MYCLE : 57- 60: atqva La-A-L aagaa ALR_MYCLE : 154- 157: qypam Lt-A-L qravv ALR_PSEFL : 10- 13: ralid Lq-A-L rhnyq G 7: 11.5102 18( 10) L-x(0,1)-A-x(0,1)-L Occurences: 18(10) ALR1_ECOLI : 105- 108: hneeq LaA-L eeasl ALR1_ECOLI : 105- 108: hneeq L-AaL eeasl ALR1_SALTY : 105- 108: hnqeq LaA-L eavel ALR1_SALTY : 105- 108: hnqeq L-AaL eavel ALR2_ECOLI : 11- 14: qasld LqA-L kqnls ALR2_ECOLI : 106- 109: hsnwq LkA-L qnarl ALR2_ECOLI : 114- 118: lqnar LkApL diylk ALR2_SALTY : 106- 109: hsnwq LkA-L qnarl ALR2_SALTY : 114- 118: lqnar LnApL diyvk ALRX_PSEPU : 1- 5: LtAvL kaday ALR_BACST : 70- 72: fldea L-A-L rekgi ALR_BACSU : 189- 193: erfke LiApL plknl ALR_HAEIN : 67- 69: rleea L-A-L rsngi ALR_HAEIN : 108- 111: hnheq LdA-L kranl ALR_MYCLE : 57- 60: atqva LaA-L aagaa ALR_MYCLE : 57- 60: atqva L-AaL aagaa ALR_MYCLE : 76- 78: tvdea L-A-L radgi ALR_MYCLE : 88- 91: isapv L-AwL hppgi ALR_MYCLE : 154- 157: qypam LtA-L qravv ALR_MYCLE : 285- 287: qhdtn L-A-L lpvgy ALR_MYCLE : 285- 288: qhdtn L-AlL pvgya ALR_PSEFL : 10- 13: ralid LqA-L rhnyq H 8: 11.0102 31( 10) A-x(0,1)-A-x(1,3)-G Occurences: 31(10) ALR1_ECOLI : 35- 39: vavvk AnAy--G hglle ALR1_ECOLI : 35- 41: vavvk AnAyghG lleta ALR1_ECOLI : 192- 195: gqrsi A-As--G gillw ALR1_ECOLI : 192- 196: gqrsi A-Asg-G illwp ALR1_ECOLI : 280- 284: gdgyx A-Aps-G tpvlv ALR1_SALTY : 35- 39: vavvk AnAy--G hglle ALR1_SALTY : 35- 41: vavvk AnAyghG lleta ALR1_SALTY : 52- 56: rtlpd AdAf--G varle ALR1_SALTY : 192- 195: gqrsi A-As--G gillw ALR1_SALTY : 192- 196: gqrsi A-Asg-G illwp ALR1_SALTY : 281- 285: dgypr A-Aps-G tpvlv ALR2_ECOLI : 36- 40: wsvvk AnAy--G hgier ALR2_ECOLI : 36- 42: wsvvk AnAyghG ieriw ALR2_ECOLI : 147- 152: wqqlr AmAnv-G emtlm ALR2_ECOLI : 179- 182: arieq A-Ae--G lecrr ALR2_ECOLI : 333- 337: kiddv AaAa--G tvgye ALR2_ECOLI : 333- 337: kiddv A-Aaa-G tvgye ALR2_ECOLI : 334- 337: iddva A-Aa--G tvgye ALR2_ECOLI : 334- 340: iddva AaAgtvG yelmc ALR2_ECOLI : 335- 340: ddvaa A-AgtvG yelmc ALR2_SALTY : 36- 40: wsvvk AnAy--G hgier ALR2_SALTY : 36- 42: wsvvk AnAyghG iervw ALR2_SALTY : 177- 182: amrri AlAte-G lqcay ALR2_SALTY : 333- 337: kvddv AsAa--G tlgye ALR2_SALTY : 335- 340: ddvas A-AgtlG yellc ALRX_PSEPU : 7- 11: tavlk AdAy--G xgigl ALRX_PSEPU : 7- 13: tavlk AdAygxG igl ALR_BACST : 40- 44: mavvk AnAy--G hgdvq ALR_BACST : 40- 46: mavvk AnAyghG dvqva ALR_BACST : 113- 119: dwlee AsAlysG pfpih ALR_BACSU : 42- 46: mavek AnAy--G hgdae ALR_BACSU : 42- 48: mavek AnAyghG daeta ALR_BACSU : 55- 60: aetak A-AldaG ascla ALR_HAEIN : 37- 41: iavvk AnAy--G hgvvf ALR_HAEIN : 37- 43: iavvk AnAyghG vvfva ALR_HAEIN : 195- 198: gerti A-As--G gilfw ALR_HAEIN : 195- 199: gerti A-Asg-G ilfwp ALR_MYCLE : 45- 49: mvvlk AdAy--G hgatq ALR_MYCLE : 45- 51: mvvlk AdAyghG atqva ALR_MYCLE : 58- 63: tqval A-AlaaG aaelg ALR_MYCLE : 59- 63: qvala AlAa--G aaelg ALR_MYCLE : 62- 68: laala AgAaelG vatvd ALR_MYCLE : 64- 68: alaag A-Ael-G vatvd ALR_MYCLE : 198- 204: faall AqAheqG lrfev ALR_PSEFL : 20- 25: hnyql A-AeviG I 9: 11.0102 16( 10) A-x(1,2)-L-x(0,2)-D Occurences: 16(10) ALR1_ECOLI : 46- 51: gllet ArtLp-D adafx ALR1_ECOLI : 111- 114: aalee As-L--D epvtv ALR1_SALTY : 46- 51: gllet ArtLp-D adafg ALR2_ECOLI : 7- 10: trpiq As-L--D lqalk ALR2_ECOLI : 116- 119: narlk Ap-L--D iylkv ALR2_SALTY : 7- 10: trpiq As-L--D lqvmk ALR2_SALTY : 116- 119: narln Ap-L--D iyvkv ALRX_PSEPU : 3- 8: lt Av-LkaD aygxg ALR_BACST : 64- 67: pppav Af-L--D ealal ALR_BACSU : 55- 58: aetak Aa-L--D agasc ALR_BACSU : 67- 70: sclam Ai-L--D eaisl ALR_BACSU : 151- 154: vqnvm Ai-L--D rnprl ALR_HAEIN : 166- 172: shfsr AdeLesD ytqlq ALR_MYCLE : 75- 81: atvde AlaLraD gisap ALR_MYCLE : 101- 105: idfgp Al-La-D vqiav ALR_PSEFL : 4- 9: mxp AraLi-D lqalr J 10: 10.0020 21( 10) D-x(0,2)-A-x(3)-[AGN] Occurences: 21(10) ALR1_ECOLI : 51- 58: artlp DadAfxvA rleea ALR1_ECOLI : 53- 58: tlpda D--AfxvA rleea ALR1_SALTY : 51- 56: artlp D--AdafG varle ALR1_SALTY : 51- 58: artlp DadAfgvA rleea ALR1_SALTY : 53- 58: tlpda D--AfgvA rleea ALR2_ECOLI : 10- 17: iqasl DlqAlkqN lsivr ALR2_ECOLI : 330- 337: keiki DdvAaaaG tvgye ALR2_ECOLI : 331- 337: eikid Dv-AaaaG tvgye ALR2_SALTY : 330- 337: keikv DdvAsaaG tlgye ALR2_SALTY : 331- 337: eikvd Dv-AsaaG tlgye ALRX_PSEPU : 8- 13: avlka D--AygxG igl ALR_BACST : 13- 20: twaev DldAiydN venlr ALR_BACST : 15- 20: aevdl D--AiydN venlr ALR_BACST : 91- 96: asrpa D--AalaA qqria ALR_BACSU : 15- 22: twaei DlsAikeN vsnmk ALR_BACSU : 58- 65: akaal DagAsclA maild ALR_HAEIN : 109- 114: nheql D--AlkrA nlpsp ALR_MYCLE : 19- 26: aeavv DlgAidyN vrvlr ALR_MYCLE : 46- 51: vvlka D--AyghG atqva ALR_MYCLE : 339- 345: dvaeg De-AilfG pgarg ALR_MYCLE : 356- 362: eptaq Dw-AdllG tihye ALR_PSEFL : 9- 16: arali DlqAlrhN yqlaa K 11: 8.3401 19( 10) I-x-L Occurences: 19(10) ALR1_ECOLI : 197- 199: aasgg IlL wpqsh ALR1_ECOLI : 212- 214: wvrpg IiL ygvsp ALR1_SALTY : 75- 77: gitqp IlL legff ALR1_SALTY : 197- 199: aasgg IlL wpqsh ALR1_SALTY : 212- 214: warpg IiL ygvsp ALR2_ECOLI : 65- 67: nleea ItL rergw ALR2_ECOLI : 120- 122: kapld IyL kvnsg ALR2_ECOLI : 210- 212: wvrpg IiL ygrsp ALR2_SALTY : 65- 67: nleea ItL rergw ALR2_SALTY : 176- 178: eamrr IaL ategl ALR2_SALTY : 210- 212: wvrpg IiL ygasp ALRX_PSEPU : 14- 16: aygxg IgL ALR_BACST : 100- 102: aaqqr IaL tvfrs ALR_BACST : 315- 317: mdqcm IrL pgplp ALR_BACSU : 14- 16: dtwae IdL saike ALR_BACSU : 73- 75: ildea IsL rkkgl ALR_HAEIN : 78- 80: gitkp IlL legff ALR_MYCLE : 6- 8: mavtp IsL rpgvl ALR_PSEFL : 8- 10: paral IdL qalrh L 12: 8.3401 47( 10) A-x(3)-G Occurences: 47(10) ALR1_ECOLI : 35- 39: vavvk AnayG hglle ALR1_ECOLI : 37- 41: vvkan AyghG lleta ALR1_ECOLI : 192- 196: gqrsi AasgG illwp ALR1_ECOLI : 271- 275: rlgvv AmgyG dgyxa ALR1_ECOLI : 280- 284: gdgyx AapsG tpvlv ALR1_SALTY : 35- 39: vavvk AnayG hglle ALR1_SALTY : 37- 41: vvkan AyghG lleta ALR1_SALTY : 52- 56: rtlpd AdafG varle ALR1_SALTY : 180- 184: ldifn AfcqG kpgqr ALR1_SALTY : 192- 196: gqrsi AasgG illwp ALR1_SALTY : 271- 275: rlgvv AmgyG dgypr ALR1_SALTY : 281- 285: dgypr AapsG tpvlv ALR2_ECOLI : 36- 40: wsvvk AnayG hgier ALR2_ECOLI : 38- 42: vvkan AyghG ieriw ALR2_ECOLI : 333- 337: kiddv AaaaG tvgye ALR2_ECOLI : 336- 340: dvaaa AgtvG yelmc ALR2_SALTY : 36- 40: wsvvk AnayG hgier ALR2_SALTY : 38- 42: vvkan AyghG iervw ALR2_SALTY : 215- 219: iilyg AspsG qwrdi ALR2_SALTY : 333- 337: kvddv AsaaG tlgye ALR2_SALTY : 336- 340: dvasa AgtlG yellc ALRX_PSEPU : 7- 11: tavlk AdayG xgigl ALRX_PSEPU : 9- 13: vlkad AygxG igl ALR_BACST : 40- 44: mavvk AnayG hgdvq ALR_BACST : 42- 46: vvkan AyghG dvqva ALR_BACST : 54- 58: qvart AlerG pppav ALR_BACST : 115- 119: leeas AlysG pfpih ALR_BACST : 227- 231: amygl ApspG ikpll ALR_BACST : 302- 306: vdgqk ApivG ricmd ALR_BACST : 378- 382: mevrn AigrG essa ALR_BACSU : 42- 46: mavek AnayG hgdae ALR_BACSU : 44- 48: vekan AyghG daeta ALR_BACSU : 56- 60: etaka AldaG ascla ALR_BACSU : 218- 222: kgffn AvrfG igmyg ALR_HAEIN : 37- 41: iavvk AnayG hgvvf ALR_HAEIN : 39- 43: vvkan AyghG vvfva ALR_HAEIN : 195- 199: gerti AasgG ilfwp ALR_HAEIN : 272- 276: kigvv AmgyG dgypr ALR_HAEIN : 336- 340: pietv AkftG ilsye ALR_MYCLE : 45- 49: mvvlk AdayG hgatq ALR_MYCLE : 47- 51: vlkad AyghG atqva ALR_MYCLE : 59- 63: qvala AlaaG aaelg ALR_MYCLE : 64- 68: alaag AaelG vatvd ALR_MYCLE : 200- 204: allaq AheqG lrfev ALR_MYCLE : 341- 345: aegde AilfG pgarg ALR_MYCLE : 358- 362: taqdw AdllG tihye ALR_PSEFL : 21- 25: nyqla AeviG M 13: 7.8401 30( 10) I-x(0,1)-G Occurences: 30(10) ALR1_ECOLI : 296- 298: grevp IvG rvamd ALR1_SALTY : 297- 299: grevp IvG rvamd ALR2_ECOLI : 50- 51: riwsa I-G atdgf ALR2_ECOLI : 169- 171: ehpdg IsG rmari ALR2_ECOLI : 239- 241: tlsse IiG vqtlk ALR2_ECOLI : 240- 241: lssei I-G vqtlk ALR2_ECOLI : 265- 266: rdeqr I-G ivaag ALR2_ECOLI : 316- 317: cpqag I-G tpvel ALR2_SALTY : 169- 170: dhpeg I-G eamrr ALR2_SALTY : 239- 241: tlsse IiG vqtls ALR2_SALTY : 240- 241: lssei I-G vqtls ALR2_SALTY : 265- 266: tqeqr I-G ivaag ALR2_SALTY : 316- 317: cpqag I-G tpvel ALRX_PSEPU : 14- 15: aygxg I-G l ALR_BACST : 276- 277: qteew I-G tipig ALR_BACST : 281- 282: igtip I-G yadgv ALR_BACST : 304- 306: gqkap IvG ricmd ALR_BACST : 330- 331: tkvtl I-G rqgde ALR_BACST : 379- 380: evrna I-G rgess ALR_BACSU : 30- 31: nmkkh I-G ehvhl ALR_BACSU : 223- 224: avrfg I-G myglr ALR_BACSU : 278- 279: ekdtw I-G tvpvg ALR_BACSU : 307- 309: gkrlk IaG ricmd ALR_BACSU : 333- 334: tkvtl I-G rqgde ALR_BACSU : 346- 348: ismde IaG rleti ALR_HAEIN : 226- 227: sptdt I-G kefgl ALR_HAEIN : 268- 269: prdtk I-G vvamg ALR_HAEIN : 298- 300: grlvp IvG rvsmd ALR_MYCLE : 308- 310: rldvl InG krrpg ALR_PSEFL : 24- 25: laaev I-G N 14: 7.8401 41( 10) A-x(0,1)-V Occurences: 41(10) ALR1_ECOLI : 4- 6: mqa AtV vinrr ALR1_ECOLI : 31- 32: askmv A-V vkana ALR1_ECOLI : 31- 33: askmv AvV kanay ALR1_ECOLI : 98- 99: qhfht A-V hneeq ALR1_ECOLI : 243- 244: tssli A-V rehka ALR1_SALTY : 4- 6: mqa AtV vinrr ALR1_SALTY : 31- 32: asklv A-V vkana ALR1_SALTY : 31- 33: asklv AvV kanay ALR1_SALTY : 98- 99: qclht A-V hnqeq ALR1_SALTY : 110- 111: laale A-V elaep ALR1_SALTY : 243- 244: tssli A-V rdhka ALR2_ECOLI : 28- 30: qaath ArV wsvvk ALR2_ECOLI : 149- 151: qlram AnV gemtl ALR2_ECOLI : 305- 306: smdml A-V dltpc ALR2_ECOLI : 348- 349: lmcal A-V rvpvv ALR2_SALTY : 19- 21: mkqnl AiV rraap ALR2_SALTY : 28- 30: raape ArV wsvvk ALR2_SALTY : 305- 306: smdml A-V dltpc ALR2_SALTY : 346- 347: yellc A-V aprvp ALRX_PSEPU : 3- 4: lt A-V lkada ALR_BACST : 10- 12: hrdtw AeV dldai ALR_BACST : 36- 37: dthim A-V vkana ALR_BACST : 36- 38: dthim AvV kanay ALR_BACST : 62- 63: rgppp A-V aflde ALR_BACSU : 38- 39: hvhlm A-V ekana ALR_BACSU : 89- 90: ilvlg A-V ppeyv ALR_BACSU : 218- 219: kgffn A-V rfgig ALR_HAEIN : 33- 34: nskii A-V vkana ALR_HAEIN : 33- 35: nskii AvV kanay ALR_HAEIN : 94- 95: dlpil A-V nniet ALR_HAEIN : 244- 245: tssli A-V rhhkq ALR_MYCLE : 2- 3: m A-V tpisl ALR_MYCLE : 16- 17: gvlae A-V vdlga ALR_MYCLE : 16- 18: gvlae AvV dlgai ALR_MYCLE : 70- 72: aelgv AtV deala ALR_MYCLE : 85- 87: adgis ApV lawlh ALR_MYCLE : 104- 106: gpall AdV qiavs ALR_MYCLE : 109- 110: advqi A-V ssvrq ALR_MYCLE : 122- 123: delld A-V rrtgr ALR_MYCLE : 130- 132: rtgrt AtV tvkad ALR_MYCLE : 160- 161: talqr A-V vedav ALR_MYCLE : 160- 162: talqr AvV edavr ALR_MYCLE : 165- 166: avved A-V rlrgl ALR_MYCLE : 234- 235: vrpgi A-V yglsp ALR_MYCLE : 258- 259: mtvkc A-V amvks ALR_MYCLE : 260- 262: vkcav AmV ksira ALR_PSEFL : 21- 23: nyqla AeV ig O 15: 7.3401 91( 10) A-x(1,3)-G Occurences: 91(10) ALR1_ECOLI : 35- 39: vavvk AnayG hglle ALR1_ECOLI : 37- 39: vvkan Ay--G hglle ALR1_ECOLI : 37- 41: vvkan AyghG lleta ALR1_ECOLI : 68- 70: alrlr Ag--G itkpv ALR1_ECOLI : 192- 195: gqrsi Aas-G gillw ALR1_ECOLI : 192- 196: gqrsi AasgG illwp ALR1_ECOLI : 193- 195: qrsia As--G gillw ALR1_ECOLI : 193- 196: qrsia Asg-G illwp ALR1_ECOLI : 227- 230: drstg Adf-G cqpvm ALR1_ECOLI : 271- 273: rlgvv Am--G ygdgy ALR1_ECOLI : 271- 275: rlgvv AmgyG dgyxa ALR1_ECOLI : 280- 284: gdgyx AapsG tpvlv ALR1_ECOLI : 281- 284: dgyxa Aps-G tpvlv ALR1_SALTY : 35- 39: vavvk AnayG hglle ALR1_SALTY : 37- 39: vvkan Ay--G hglle ALR1_SALTY : 37- 41: vvkan AyghG lleta ALR1_SALTY : 52- 56: rtlpd AdafG varle ALR1_SALTY : 54- 56: lpdad Af--G varle ALR1_SALTY : 68- 70: alrlr Ag--G itqpi ALR1_SALTY : 180- 184: ldifn AfcqG kpgqr ALR1_SALTY : 192- 195: gqrsi Aas-G gillw ALR1_SALTY : 192- 196: gqrsi AasgG illwp ALR1_SALTY : 193- 195: qrsia As--G gillw ALR1_SALTY : 193- 196: qrsia Asg-G illwp ALR1_SALTY : 208- 211: shfdw Arp-G iilyg ALR1_SALTY : 271- 273: rlgvv Am--G ygdgy ALR1_SALTY : 271- 275: rlgvv AmgyG dgypr ALR1_SALTY : 281- 285: dgypr AapsG tpvlv ALR1_SALTY : 282- 285: gypra Aps-G tpvlv ALR2_ECOLI : 36- 40: wsvvk AnayG hgier ALR2_ECOLI : 38- 40: vvkan Ay--G hgier ALR2_ECOLI : 38- 42: vvkan AyghG ieriw ALR2_ECOLI : 49- 51: eriws Ai--G atdgf ALR2_ECOLI : 52- 55: wsaig Atd-G falln ALR2_ECOLI : 149- 152: qlram Anv-G emtlm ALR2_ECOLI : 179- 182: arieq Aae-G lecrr ALR2_ECOLI : 180- 182: rieqa Ae--G lecrr ALR2_ECOLI : 225- 228: qwrdi Ant-G lrpvm ALR2_ECOLI : 269- 271: rigiv Aa--G yadgy ALR2_ECOLI : 273- 275: vaagy Ad--G yprha ALR2_ECOLI : 280- 283: gyprh Alt-G tpvlv ALR2_ECOLI : 314- 317: tpcpq Agi-G tpvel ALR2_ECOLI : 333- 337: kiddv AaaaG tvgye ALR2_ECOLI : 334- 337: iddva Aaa-G tvgye ALR2_ECOLI : 335- 337: ddvaa Aa--G tvgye ALR2_ECOLI : 336- 340: dvaaa AgtvG yelmc ALR2_SALTY : 36- 40: wsvvk AnayG hgier ALR2_SALTY : 38- 40: vvkan Ay--G hgier ALR2_SALTY : 38- 42: vvkan AyghG iervw ALR2_SALTY : 49- 51: ervws Al--G atdgf ALR2_SALTY : 52- 55: wsalg Atd-G famln ALR2_SALTY : 179- 182: rrial Ate-G lqcay ALR2_SALTY : 215- 219: iilyg AspsG qwrdi ALR2_SALTY : 225- 228: qwrdi Adt-G lkpvm ALR2_SALTY : 269- 271: rigiv Aa--G yadgy ALR2_SALTY : 273- 275: vaagy Ad--G yprha ALR2_SALTY : 280- 283: gyprh Apt-G tpvlv ALR2_SALTY : 314- 317: tpcpq Agi-G tpvel ALR2_SALTY : 333- 337: kvddv AsaaG tlgye ALR2_SALTY : 335- 337: ddvas Aa--G tlgye ALR2_SALTY : 336- 340: dvasa AgtlG yellc ALRX_PSEPU : 7- 11: tavlk AdayG xgigl ALRX_PSEPU : 9- 11: vlkad Ay--G xgigl ALRX_PSEPU : 9- 13: vlkad AygxG igl ALR_BACST : 40- 44: mavvk AnayG hgdvq ALR_BACST : 42- 44: vvkan Ay--G hgdvq ALR_BACST : 42- 46: vvkan AyghG dvqva ALR_BACST : 54- 58: qvart AlerG pppav ALR_BACST : 115- 119: leeas AlysG pfpih ALR_BACST : 222- 225: vrfgi Amy-G lapsp ALR_BACST : 227- 231: amygl ApspG ikpll ALR_BACST : 284- 286: ipigy Ad--G vrrlq ALR_BACST : 302- 306: vdgqk ApivG ricmd ALR_BACST : 378- 380: mevrn Ai--G rgess ALR_BACST : 378- 382: mevrn AigrG essa ALR_BACSU : 42- 46: mavek AnayG hgdae ALR_BACSU : 44- 46: vekan Ay--G hgdae ALR_BACSU : 44- 48: vekan AyghG daeta ALR_BACSU : 56- 60: etaka AldaG ascla ALR_BACSU : 206- 208: hcans Aa--G lrlkk ALR_BACSU : 218- 222: kgffn AvrfG igmyg ALR_BACSU : 286- 288: vpvgy Ad--G wlrkl ALR_HAEIN : 37- 41: iavvk AnayG hgvvf ALR_HAEIN : 39- 41: vvkan Ay--G hgvvf ALR_HAEIN : 39- 43: vvkan AyghG vvfva ALR_HAEIN : 195- 198: gerti Aas-G gilfw ALR_HAEIN : 195- 199: gerti AasgG ilfwp ALR_HAEIN : 196- 198: ertia As--G gilfw ALR_HAEIN : 196- 199: ertia Asg-G ilfwp ALR_HAEIN : 272- 274: kigvv Am--G ygdgy ALR_HAEIN : 272- 276: kigvv AmgyG dgypr ALR_HAEIN : 336- 340: pietv AkftG ilsye ALR_MYCLE : 45- 49: mvvlk AdayG hgatq ALR_MYCLE : 47- 49: vlkad Ay--G hgatq ALR_MYCLE : 47- 51: vlkad AyghG atqva ALR_MYCLE : 59- 63: qvala AlaaG aaelg ALR_MYCLE : 61- 63: alaal Aa--G aaelg ALR_MYCLE : 64- 68: alaag AaelG vatvd ALR_MYCLE : 65- 68: laaga Ael-G vatvd ALR_MYCLE : 80- 82: alalr Ad--G isapv ALR_MYCLE : 136- 139: tvtvk Adt-G lnrng ALR_MYCLE : 200- 204: allaq AheqG lrfev ALR_MYCLE : 234- 237: vrpgi Avy-G lspvp ALR_MYCLE : 267- 270: vksir Age-G vsygh ALR_MYCLE : 293- 295: lpvgy Ad--G vfrsl ALR_MYCLE : 336- 338: gpidv Ae--G deail ALR_MYCLE : 341- 345: aegde AilfG pgarg ALR_MYCLE : 348- 350: lfgpg Ar--G eptaq ALR_MYCLE : 358- 362: taqdw AdllG tihye ALR_PSEFL : 21- 25: nyqla AeviG P 16: 7.3401 74( 10) A-x(0,2)-D Occurences: 74(10) ALR1_ECOLI : 52- 53: rtlpd A--D afxva ALR1_ECOLI : 84- 86: egffd Ar-D lptis ALR1_ECOLI : 111- 114: aalee AslD epvtv ALR1_ECOLI : 161- 164: ivshf AraD epkcg ALR1_ECOLI : 163- 164: shfar A--D epkcg ALR1_ECOLI : 227- 228: drstg A--D fgcqp ALR1_ECOLI : 301- 303: ivgrv Am-D micvd ALR1_ECOLI : 313- 315: dlgpq Aq-D kagdp ALR1_ECOLI : 317- 319: qaqdk Ag-D pvilw ALR1_SALTY : 52- 53: rtlpd A--D afgva ALR1_SALTY : 84- 86: egffd Aa-D lptis ALR1_SALTY : 85- 86: gffda A--D lptis ALR1_SALTY : 161- 164: ivshf AraD epecg ALR1_SALTY : 163- 164: shfar A--D epecg ALR1_SALTY : 243- 246: tssli AvrD hkage ALR1_SALTY : 302- 304: ivgrv Am-D micvd ALR1_SALTY : 314- 316: dlgpn Aq-D nagdp ALR1_SALTY : 318- 320: naqdn Ag-D pvvlw ALR2_ECOLI : 7- 10: trpiq AslD lqalk ALR2_ECOLI : 52- 54: wsaig At-D gfall ALR2_ECOLI : 85- 87: egffh Aq-D leiyd ALR2_ECOLI : 116- 119: narlk AplD iylkv ALR2_ECOLI : 201- 204: lwhpe AhfD wvrpg ALR2_ECOLI : 259- 261: ggryt Ar-D eqrig ALR2_ECOLI : 273- 274: vaagy A--D gyprh ALR2_ECOLI : 305- 307: smdml Av-D ltpcp ALR2_SALTY : 7- 10: trpiq AslD lqvmk ALR2_SALTY : 52- 54: wsalg At-D gfaml ALR2_SALTY : 85- 87: egffh Aq-D leayd ALR2_SALTY : 90- 92: aqdle Ay-D tyrlt ALR2_SALTY : 116- 119: narln AplD iyvkv ALR2_SALTY : 161- 164: lmshf AqaD hpegi ALR2_SALTY : 163- 164: shfaq A--D hpegi ALR2_SALTY : 201- 204: lwhpq AhyD wvrpg ALR2_SALTY : 225- 226: qwrdi A--D tglkp ALR2_SALTY : 273- 274: vaagy A--D gyprh ALR2_SALTY : 305- 307: smdml Av-D ltpcp ALRX_PSEPU : 7- 8: tavlk A--D aygxg ALR_BACST : 10- 13: hrdtw AevD ldaiy ALR_BACST : 16- 19: evdld AiyD nvenl ALR_BACST : 64- 67: pppav AflD ealal ALR_BACST : 90- 91: gasrp A--D aalaa ALR_BACST : 167- 170: lythf AtaD evntd ALR_BACST : 169- 170: thfat A--D evntd ALR_BACST : 284- 285: ipigy A--D gvrrl ALR_BACSU : 12- 15: yrdtw AeiD lsaik ALR_BACSU : 55- 58: aetak AalD agasc ALR_BACSU : 56- 58: etaka Al-D agasc ALR_BACSU : 67- 70: sclam AilD eaisl ALR_BACSU : 99- 102: yvaia AeyD vtltg ALR_BACSU : 151- 154: vqnvm AilD rnprl ALR_BACSU : 169- 172: vfthf AtaD ekerg ALR_BACSU : 171- 172: thfat A--D ekerg ALR_BACSU : 232- 233: glrps A--D msdei ALR_BACSU : 272- 275: gaeyt AekD twigt ALR_BACSU : 286- 287: vpvgy A--D gwlrk ALR_HAEIN : 136- 138: hrlgv Al-D evdyf ALR_HAEIN : 166- 167: shfsr A--D elesd ALR_HAEIN : 313- 314: tvdlg A--D sqdlv ALR_MYCLE : 16- 19: gvlae AvvD lgaid ALR_MYCLE : 22- 24: vvdlg Ai-D ynvrv ALR_MYCLE : 45- 46: mvvlk A--D ayghg ALR_MYCLE : 70- 73: aelgv AtvD ealal ALR_MYCLE : 80- 81: alalr A--D gisap ALR_MYCLE : 104- 105: gpall A--D vqiav ALR_MYCLE : 136- 137: tvtvk A--D tglnr ALR_MYCLE : 178- 179: shlvy A--D qpdnp ALR_MYCLE : 225- 227: srpdl Ay-D lvrpg ALR_MYCLE : 279- 282: ghdwi AqhD tnlal ALR_MYCLE : 293- 294: lpvgy A--D gvfrs ALR_MYCLE : 336- 339: gpidv AegD eailf ALR_MYCLE : 354- 356: rgept Aq-D wadll ALR_MYCLE : 358- 359: taqdw A--D llgti ALR_PSEFL : 6- 9: mxpar AliD lqalr Number of patterns evaluated by Pratt:63 Total running time: 1 seconds