------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file ALADH_PNT_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ALADH_PNT_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DHA_BACSH 372 DHA_BACST 372 DHA_MYCTU 373 NNTM_BOVIN 1086 PNTA_ECOLI 510 PNTA_HAEIN 512 Pratt run started at Thu Feb 6 18:34:22 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 36.5305 6( 6) P-x-E-x(3)-N-E-x(1,3)-R-V-A-x(2)-P-x(2)-V 2: 36.0305 6( 6) E-x(3)-N-E-x(1,3)-R-V-A-x(2)-P-x(2)-V-x(2,3)-L 3: 36.0305 6( 6) P-x(5)-N-E-x(1,3)-R-V-A-x(2)-P-x(2)-V-x(2,3)-L 4: 36.0305 6( 6) G-x(2,3)-E-x(3)-N-E-x(1,3)-R-V-A-x(2)-P-x(2)-V 5: 32.3604 6( 6) M-x(2)-G-x-V-x(0,1)-V-x(0,1)-D-x-A-x(3)-G-G 6: 31.8604 6( 6) N-E-x(1,3)-R-V-A-x(2)-P-x(2)-V-x(2,3)-L 7: 29.1904 6( 6) G-x-V-x-V-D-x-A-x(3)-G-G 8: 28.1904 6( 6) G-x-V-x(0,1)-V-x(0,1)-D-x-A-x(3)-G-G 9: 28.1904 6( 6) G-x(1,2)-V-x(0,1)-V-D-x-A-x(3)-G-G 10: 28.1904 6( 6) R-V-A-x(2)-P-x(2)-V-x(2,3)-L-x(2,3)-G 11: 27.6904 6( 6) A-x(3)-A-A-x(3,4)-G-x(0,2)-A-x-V-x(3)-D 12: 27.6904 6( 6) G-x(5)-A-A-x(3,4)-G-x(0,2)-A-x-V-x(3)-D 13: 27.6904 6( 6) G-x-G-x-A-G-x(2,3)-A-x(0,2)-A-x(4)-G 14: 27.6904 7( 6) E-x(1,3)-R-V-A-x(2)-P-x(2)-V-x(2,3)-L 15: 27.6904 9( 6) N-x(0,1)-E-x(1,3)-R-V-A-x(2)-P-x(2)-V 16: 27.6904 8( 6) N-x(2,4)-R-V-A-x(2)-P-x(2)-V-x(2,3)-L 17: 25.0203 6( 6) V-x-V-D-x-A-x(3)-G-G 18: 25.0203 6( 6) V-x(4)-A-G-V-x(2)-L-x(3)-G 19: 24.5203 8( 6) V-x(0,1)-V-D-x-A-x(3)-G-G 20: 24.0203 8( 6) V-x(0,1)-V-x(0,1)-D-x-A-x(3)-G-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 80.5070 6( 6) P-x-E-x(2)-[ENQT]-N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-[IL]-x-[HKR]-x-G-[FH]-[DENT]-x(2)-[AIV]-x(2)-[DEGT]-[AG]-G-x(2)-[AGS]-x(3)-[DT] B 2: 80.0070 6( 6) G-x(2,3)-E-x(2)-[ENQT]-N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-[IL]-x-[HKR]-x-G-[FH]-[DENT]-x(2)-[AIV]-x(2)-[DEGT]-[AG]-G-x(2)-[AGS]-x(3)-[DT] C 3: 69.4757 9( 6) N-x(0,1)-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-[IL]-x-[HKR]-x-G-[FH]-[DENT]-x(2)-[AIV]-x(2)-[DEGT]-[AG]-G-x(2)-[AGS]-x(3)-[DT] D 4: 67.6239 6( 6) G-x-A-[AGS]-x-[GN]-A-A-x(3,4)-G-x(0,2)-A-x-V-x-[AGIV]-[FIL]-D-x-[NRS]-[AIP]-[ADE]-x(2)-[ER]-[EQ]-[FLV]-x-[ADS]-x(2)-[ACG]-x(2)-[ILV] E 5: 63.4538 6( 6) A-[AGS]-x-[GN]-A-A-x(3,4)-G-x(0,2)-A-x-V-x-[AGIV]-[FIL]-D-x-[NRS]-[AIP]-[ADE]-x(2)-[ER]-[EQ]-[FLV]-x-[ADS]-x(2)-[ACG]-x(2)-[ILV] F 6: 63.4389 6( 6) V-x-[ILMV]-x-[GP]-A-G-V-x-[AEGST]-L-[ATV]-x(2)-G-x-[AEN]-x(2)-[AILV]-x-[AEST]-x-[AGV]-x-[AEG]-x-[DGS]-x(3)-[DET]-[ADSV]-x(4)-[AQ]-[AGS]-x-[AGQ] G 7: 57.9221 6( 6) R-V-A-x-[ST]-P-x-[GT]-V-x(2,3)-L-x(2,3)-G-[FH]-[DENT]-x(2)-[AIV]-x(2)-[DEGT]-[AG]-G-x(2)-[AGS]-x(3)-[DT] H 8: 55.6275 6( 6) M-x(2)-G-[AS]-V-x(0,1)-V-x(0,1)-D-[IL]-A-[AI]-[ADEQ]-[ANQT]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV] I 9: 55.0809 6( 6) G-[AG]-G-x-A-G-x(2,3)-A-x(0,2)-A-x(2)-[AGS]-x-G-x-[GI]-[AV]-x-[AGV]-x(3)-[DR]-[AILP]-[AENS]-[AIPV]-x-[EKR] J 10: 51.9402 6( 6) G-x-V-[ILV]-V-D-[IL]-A-[AI]-[ADEQ]-[ANQT]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV] K 11: 51.4574 6( 6) G-[AS]-V-x(0,1)-V-x(0,1)-D-[IL]-A-[AI]-[ADEQ]-[ANQT]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV] L 12: 48.7674 6( 6) P-x-E-x(2)-[ENQT]-N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x(2,3)-L M 13: 48.2783 6( 6) G-x(1,2)-V-x(0,1)-V-D-[IL]-A-[AI]-[ADEQ]-[ANQT]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV] N 14: 47.7701 6( 6) V-[ILV]-V-D-[IL]-A-[AI]-[ADEQ]-[ANQT]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV] O 15: 44.6083 8( 6) V-x(0,1)-V-D-[IL]-A-[AI]-[ADEQ]-[ANQT]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV] P 16: 44.5974 6( 6) E-x(2)-[ENQT]-N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x(2,3)-L Q 17: 44.1083 8( 6) V-x(0,1)-V-x(0,1)-D-[IL]-A-[AI]-[ADEQ]-[ANQT]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV] R 18: 38.2362 6( 6) N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x(2,3)-L S 19: 34.0662 7( 6) E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x(2,3)-L T 20: 34.0662 8( 6) N-x(2,4)-R-V-A-x-[ST]-P-x-[GT]-V-x(2,3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 80.5070 6( 6) P-x-E-x(2)-[ENQT]-N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-[IL]-x-[HKR]-x-G-[FH]-[DENT]-x(2)-[AIV]-x(2)-[DEGT]-[AG]-G-x(2)-[AGS]-x(3)-[DT] Occurences: 6(6) DHA_BACSH : 6- 47: mkigi PkEikNNEn--RVAmTPaGVvSLtHaGHErlAieTGGgiGssfT daeyv DHA_BACST : 6- 47: mkigi PkEikNNEn--RVAiTPaGVmTLvKaGHEvyVetEGGagSgfsD seyek DHA_MYCTU : 6- 49: mrvgi PtEtkNNEfqfRVAiTPaGVaELtRrGHEvlIqaGAGegSaitD adfka NNTM_BOVIN : 62- 103: ltvgv PkEifQNEk--RVAlSPaGVqALvKqGFNvvVesGAGeaSkfsD dhyra PNTA_ECOLI : 6- 47: mrigi PrErlTNEt--RVAaTPkTVeQLlKlGFTvaVesGAGqlAsfdD kafvq PNTA_HAEIN : 6- 47: mligv PrEllENEs--RVAaTPkTVqQIlKlGFDviVehDAGfkAsfeD qafle B 2: 80.0070 6( 6) G-x(2,3)-E-x(2)-[ENQT]-N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-[IL]-x-[HKR]-x-G-[FH]-[DENT]-x(2)-[AIV]-x(2)-[DEGT]-[AG]-G-x(2)-[AGS]-x(3)-[DT] Occurences: 6(6) DHA_BACSH : 4- 47: mki GipkEikNNEn--RVAmTPaGVvSLtHaGHErlAieTGGgiGssfT daeyv DHA_BACST : 4- 47: mki GipkEikNNEn--RVAiTPaGVmTLvKaGHEvyVetEGGagSgfsD seyek DHA_MYCTU : 4- 49: mrv GiptEtkNNEfqfRVAiTPaGVaELtRrGHEvlIqaGAGegSaitD adfka NNTM_BOVIN : 60- 103: kqltv GvpkEifQNEk--RVAlSPaGVqALvKqGFNvvVesGAGeaSkfsD dhyra PNTA_ECOLI : 4- 47: mri GiprErlTNEt--RVAaTPkTVeQLlKlGFTvaVesGAGqlAsfdD kafvq PNTA_HAEIN : 4- 47: mli GvprEllENEs--RVAaTPkTVqQIlKlGFDviVehDAGfkAsfeD qafle C 3: 69.4757 9( 6) N-x(0,1)-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-[IL]-x-[HKR]-x-G-[FH]-[DENT]-x(2)-[AIV]-x(2)-[DEGT]-[AG]-G-x(2)-[AGS]-x(3)-[DT] Occurences: 9(6) DHA_BACSH : 11- 47: pkeik NnEn--RVAmTPaGVvSLtHaGHErlAieTGGgiGssfT daeyv DHA_BACSH : 12- 47: keikn N-En--RVAmTPaGVvSLtHaGHErlAieTGGgiGssfT daeyv DHA_BACST : 11- 47: pkeik NnEn--RVAiTPaGVmTLvKaGHEvyVetEGGagSgfsD seyek DHA_BACST : 12- 47: keikn N-En--RVAiTPaGVmTLvKaGHEvyVetEGGagSgfsD seyek DHA_MYCTU : 11- 49: ptetk NnEfqfRVAiTPaGVaELtRrGHEvlIqaGAGegSaitD adfka DHA_MYCTU : 12- 49: tetkn N-EfqfRVAiTPaGVaELtRrGHEvlIqaGAGegSaitD adfka NNTM_BOVIN : 68- 103: keifq N-Ek--RVAlSPaGVqALvKqGFNvvVesGAGeaSkfsD dhyra PNTA_ECOLI : 12- 47: rerlt N-Et--RVAaTPkTVeQLlKlGFTvaVesGAGqlAsfdD kafvq PNTA_HAEIN : 12- 47: relle N-Es--RVAaTPkTVqQIlKlGFDviVehDAGfkAsfeD qafle D 4: 67.6239 6( 6) G-x-A-[AGS]-x-[GN]-A-A-x(3,4)-G-x(0,2)-A-x-V-x-[AGIV]-[FIL]-D-x-[NRS]-[AIP]-[ADE]-x(2)-[ER]-[EQ]-[FLV]-x-[ADS]-x(2)-[ACG]-x(2)-[ILV] Occurences: 6(6) DHA_BACSH : 177- 215: tvigg GiAGtNAAkiavGmgAdVtVIDlSPErlRQLeDmfGrdV qtlms DHA_BACST : 177- 215: tiigg GtAGtNAAkigvGlgAdVtILDiNAErlRELdDlfGdhV ttlms DHA_MYCTU : 179- 217: vviga GtAGyNAArianGmgAtVtVLDiNIDklRQLdAefCgrI htrys NNTM_BOVIN : 239- 274: gggva GlASaGAAksm-G--AiVrGFDtRAAalEQFkSlgAepL evdlk PNTA_ECOLI : 177- 212: gagva GlAAiGAAnsl-G--AiVrAFDtRPEvkEQVqSmgAefL eldfk PNTA_HAEIN : 177- 212: gagva GlAAiGAAnsl-G--AiVrAFDsRPEvkEQVqSmgAsfL eidfk E 5: 63.4538 6( 6) A-[AGS]-x-[GN]-A-A-x(3,4)-G-x(0,2)-A-x-V-x-[AGIV]-[FIL]-D-x-[NRS]-[AIP]-[ADE]-x(2)-[ER]-[EQ]-[FLV]-x-[ADS]-x(2)-[ACG]-x(2)-[ILV] Occurences: 6(6) DHA_BACSH : 179- 215: igggi AGtNAAkiavGmgAdVtVIDlSPErlRQLeDmfGrdV qtlms DHA_BACST : 179- 215: igggt AGtNAAkigvGlgAdVtILDiNAErlRELdDlfGdhV ttlms DHA_MYCTU : 181- 217: igagt AGyNAArianGmgAtVtVLDiNIDklRQLdAefCgrI htrys NNTM_BOVIN : 241- 274: gvagl ASaGAAksm-G--AiVrGFDtRAAalEQFkSlgAepL evdlk PNTA_ECOLI : 179- 212: gvagl AAiGAAnsl-G--AiVrAFDtRPEvkEQVqSmgAefL eldfk PNTA_HAEIN : 179- 212: gvagl AAiGAAnsl-G--AiVrAFDsRPEvkEQVqSmgAsfL eidfk F 6: 63.4389 6( 6) V-x-[ILMV]-x-[GP]-A-G-V-x-[AEGST]-L-[ATV]-x(2)-G-x-[AEN]-x(2)-[AILV]-x-[AEST]-x-[AGV]-x-[AEG]-x-[DGS]-x(3)-[DET]-[ADSV]-x(4)-[AQ]-[AGS]-x-[AGQ] Occurences: 6(6) DHA_BACSH : 16- 56: nnenr VaMtPAGVvSLThaGhErlAiEtGgGiGssfTDaeyvAAgA ayrci DHA_BACST : 16- 56: nnenr VaItPAGVmTLVkaGhEvyVeTeGgAgSgfsDSeyekAGaA drcrt DHA_MYCTU : 18- 58: efqfr VaItPAGVaELTrrGhEvlIqAgAgEgSaitDAdfkaAGaQ lvgta NNTM_BOVIN : 72- 112: qnekr VaLsPAGVqALVkqGfNvvVeSgAgEaSkfsDDhyraAGaQ iqgak PNTA_ECOLI : 168- 208: vppak VmViGAGVaGLAaiGaAnsLgAiVrAfDtrpEVkeqvQSmG aefle PNTA_HAEIN : 168- 208: vppak VlViGAGVaGLAaiGaAnsLgAiVrAfDsrpEVkeqvQSmG asfle G 7: 57.9221 6( 6) R-V-A-x-[ST]-P-x-[GT]-V-x(2,3)-L-x(2,3)-G-[FH]-[DENT]-x(2)-[AIV]-x(2)-[DEGT]-[AG]-G-x(2)-[AGS]-x(3)-[DT] Occurences: 6(6) DHA_BACSH : 15- 47: knnen RVAmTPaGVvs-LthaGHErlAieTGGgiGssfT daeyv DHA_BACST : 15- 47: knnen RVAiTPaGVmt-LvkaGHEvyVetEGGagSgfsD seyek DHA_MYCTU : 17- 49: nefqf RVAiTPaGVae-LtrrGHEvlIqaGAGegSaitD adfka NNTM_BOVIN : 71- 103: fqnek RVAlSPaGVqa-LvkqGFNvvVesGAGeaSkfsD dhyra PNTA_ECOLI : 15- 47: ltnet RVAaTPkTVeqlLkl-GFTvaVesGAGqlAsfdD kafvq PNTA_ECOLI : 15- 47: ltnet RVAaTPkTVeq-LlklGFTvaVesGAGqlAsfdD kafvq PNTA_HAEIN : 15- 47: lenes RVAaTPkTVqqiLkl-GFDviVehDAGfkAsfeD qafle H 8: 55.6275 6( 6) M-x(2)-G-[AS]-V-x(0,1)-V-x(0,1)-D-[IL]-A-[AI]-[ADEQ]-[ANQT]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV] Occurences: 6(6) DHA_BACSH : 258- 281: emiqs MqpGSVvV-DIAIDQGGifAtSdrV tthdd DHA_BACSH : 258- 281: emiqs MqpGSV-VvDIAIDQGGifAtSdrV tthdd DHA_BACST : 257- 280: emvrs MtpGSVlV-DIAIDQGGifEtTdrV tthdd DHA_MYCTU : 260- 283: slvah MkpGAVlV-DIAIDQGGcfEgSrpT tydhp NNTM_BOVIN : 337- 360: emies MkeGSVvV-DLAAEAGGnfEtTkpG elyvh NNTM_BOVIN : 337- 360: emies MkeGSV-VvDLAAEAGGnfEtTkpG elyvh PNTA_ECOLI : 275- 298: emvds MkaGSViV-DLAAQNGGncEyTvpG eiftt PNTA_HAEIN : 275- 298: emvds MkpGSViV-DLAAATGGncEyTqaG kvvtt I 9: 55.0809 6( 6) G-[AG]-G-x-A-G-x(2,3)-A-x(0,2)-A-x(2)-[AGS]-x-G-x-[GI]-[AV]-x-[AGV]-x(3)-[DR]-[AILP]-[AENS]-[AIPV]-x-[EKR] Occurences: 6(6) DHA_BACSH : 175- 203: kvtvi GGGiAGtn-A--AkiAvGmGAdVtviDLSPeR lrqle DHA_BACST : 175- 203: kvtii GGGtAGtn-A--AkiGvGlGAdVtilDINAeR lreld DHA_MYCTU : 177- 205: dvvvi GAGtAGyn-A--AriAnGmGAtVtvlDINIdK lrqld NNTM_BOVIN : 234- 264: kiliv GGGvAGlasAg-AakSmGaIVrGfdtRAAAlE qfksl PNTA_ECOLI : 172- 202: kvmvi GAGvAGla-AigAanSlGaIVrAfdtRPEVkE qvqsm PNTA_HAEIN : 172- 202: kvlvi GAGvAGla-AigAanSlGaIVrAfdsRPEVkE qvqsm J 10: 51.9402 6( 6) G-x-V-[ILV]-V-D-[IL]-A-[AI]-[ADEQ]-[ANQT]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV] Occurences: 6(6) DHA_BACSH : 261- 281: qsmqp GsVVVDIAIDQGGifAtSdrV tthdd DHA_BACST : 260- 280: rsmtp GsVLVDIAIDQGGifEtTdrV tthdd DHA_MYCTU : 263- 283: ahmkp GaVLVDIAIDQGGcfEgSrpT tydhp NNTM_BOVIN : 340- 360: esmke GsVVVDLAAEAGGnfEtTkpG elyvh PNTA_ECOLI : 278- 298: dsmka GsVIVDLAAQNGGncEyTvpG eiftt PNTA_HAEIN : 278- 298: dsmkp GsVIVDLAAATGGncEyTqaG kvvtt K 11: 51.4574 6( 6) G-[AS]-V-x(0,1)-V-x(0,1)-D-[IL]-A-[AI]-[ADEQ]-[ANQT]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV] Occurences: 6(6) DHA_BACSH : 261- 281: qsmqp GSVvV-DIAIDQGGifAtSdrV tthdd DHA_BACSH : 261- 281: qsmqp GSV-VvDIAIDQGGifAtSdrV tthdd DHA_BACST : 260- 280: rsmtp GSVlV-DIAIDQGGifEtTdrV tthdd DHA_MYCTU : 263- 283: ahmkp GAVlV-DIAIDQGGcfEgSrpT tydhp NNTM_BOVIN : 340- 360: esmke GSVvV-DLAAEAGGnfEtTkpG elyvh NNTM_BOVIN : 340- 360: esmke GSV-VvDLAAEAGGnfEtTkpG elyvh PNTA_ECOLI : 278- 298: dsmka GSViV-DLAAQNGGncEyTvpG eiftt PNTA_HAEIN : 278- 298: dsmkp GSViV-DLAAATGGncEyTqaG kvvtt L 12: 48.7674 6( 6) P-x-E-x(2)-[ENQT]-N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x(2,3)-L Occurences: 6(6) DHA_BACSH : 6- 26: mkigi PkEikNNEn--RVAmTPaGVvs-L thagh DHA_BACST : 6- 26: mkigi PkEikNNEn--RVAiTPaGVmt-L vkagh DHA_MYCTU : 6- 28: mrvgi PtEtkNNEfqfRVAiTPaGVae-L trrgh NNTM_BOVIN : 62- 82: ltvgv PkEifQNEk--RVAlSPaGVqa-L vkqgf PNTA_ECOLI : 6- 26: mrigi PrErlTNEt--RVAaTPkTVeq-L lklgf PNTA_ECOLI : 6- 27: mrigi PrErlTNEt--RVAaTPkTVeqlL klgft PNTA_HAEIN : 6- 27: mligv PrEllENEs--RVAaTPkTVqqiL klgfd M 13: 48.2783 6( 6) G-x(1,2)-V-x(0,1)-V-D-[IL]-A-[AI]-[ADEQ]-[ANQT]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV] Occurences: 6(6) DHA_BACSH : 261- 281: qsmqp GsvV-VDIAIDQGGifAtSdrV tthdd DHA_BACSH : 261- 281: qsmqp Gs-VvVDIAIDQGGifAtSdrV tthdd DHA_BACST : 260- 280: rsmtp Gs-VlVDIAIDQGGifEtTdrV tthdd DHA_MYCTU : 263- 283: ahmkp Ga-VlVDIAIDQGGcfEgSrpT tydhp NNTM_BOVIN : 340- 360: esmke GsvV-VDLAAEAGGnfEtTkpG elyvh NNTM_BOVIN : 340- 360: esmke Gs-VvVDLAAEAGGnfEtTkpG elyvh PNTA_ECOLI : 278- 298: dsmka Gs-ViVDLAAQNGGncEyTvpG eiftt PNTA_HAEIN : 278- 298: dsmkp Gs-ViVDLAAATGGncEyTqaG kvvtt N 14: 47.7701 6( 6) V-[ILV]-V-D-[IL]-A-[AI]-[ADEQ]-[ANQT]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV] Occurences: 6(6) DHA_BACSH : 263- 281: mqpgs VVVDIAIDQGGifAtSdrV tthdd DHA_BACST : 262- 280: mtpgs VLVDIAIDQGGifEtTdrV tthdd DHA_MYCTU : 265- 283: mkpga VLVDIAIDQGGcfEgSrpT tydhp NNTM_BOVIN : 342- 360: mkegs VVVDLAAEAGGnfEtTkpG elyvh PNTA_ECOLI : 280- 298: mkags VIVDLAAQNGGncEyTvpG eiftt PNTA_HAEIN : 280- 298: mkpgs VIVDLAAATGGncEyTqaG kvvtt O 15: 44.6083 8( 6) V-x(0,1)-V-D-[IL]-A-[AI]-[ADEQ]-[ANQT]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV] Occurences: 8(6) DHA_BACSH : 263- 281: mqpgs VvVDIAIDQGGifAtSdrV tthdd DHA_BACSH : 264- 281: qpgsv V-VDIAIDQGGifAtSdrV tthdd DHA_BACST : 262- 280: mtpgs VlVDIAIDQGGifEtTdrV tthdd DHA_MYCTU : 265- 283: mkpga VlVDIAIDQGGcfEgSrpT tydhp NNTM_BOVIN : 342- 360: mkegs VvVDLAAEAGGnfEtTkpG elyvh NNTM_BOVIN : 343- 360: kegsv V-VDLAAEAGGnfEtTkpG elyvh PNTA_ECOLI : 280- 298: mkags ViVDLAAQNGGncEyTvpG eiftt PNTA_HAEIN : 280- 298: mkpgs ViVDLAAATGGncEyTqaG kvvtt P 16: 44.5974 6( 6) E-x(2)-[ENQT]-N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x(2,3)-L Occurences: 6(6) DHA_BACSH : 8- 26: igipk EikNNEn--RVAmTPaGVvs-L thagh DHA_BACST : 8- 26: igipk EikNNEn--RVAiTPaGVmt-L vkagh DHA_MYCTU : 8- 28: vgipt EtkNNEfqfRVAiTPaGVae-L trrgh NNTM_BOVIN : 64- 82: vgvpk EifQNEk--RVAlSPaGVqa-L vkqgf PNTA_ECOLI : 8- 26: igipr ErlTNEt--RVAaTPkTVeq-L lklgf PNTA_ECOLI : 8- 27: igipr ErlTNEt--RVAaTPkTVeqlL klgft PNTA_HAEIN : 8- 27: igvpr EllENEs--RVAaTPkTVqqiL klgfd Q 17: 44.1083 8( 6) V-x(0,1)-V-x(0,1)-D-[IL]-A-[AI]-[ADEQ]-[ANQT]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV] Occurences: 8(6) DHA_BACSH : 263- 281: mqpgs VvV-DIAIDQGGifAtSdrV tthdd DHA_BACSH : 263- 281: mqpgs V-VvDIAIDQGGifAtSdrV tthdd DHA_BACSH : 264- 281: qpgsv V-V-DIAIDQGGifAtSdrV tthdd DHA_BACST : 262- 280: mtpgs VlV-DIAIDQGGifEtTdrV tthdd DHA_MYCTU : 265- 283: mkpga VlV-DIAIDQGGcfEgSrpT tydhp NNTM_BOVIN : 342- 360: mkegs VvV-DLAAEAGGnfEtTkpG elyvh NNTM_BOVIN : 342- 360: mkegs V-VvDLAAEAGGnfEtTkpG elyvh NNTM_BOVIN : 343- 360: kegsv V-V-DLAAEAGGnfEtTkpG elyvh PNTA_ECOLI : 280- 298: mkags ViV-DLAAQNGGncEyTvpG eiftt PNTA_HAEIN : 280- 298: mkpgs ViV-DLAAATGGncEyTqaG kvvtt R 18: 38.2362 6( 6) N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x(2,3)-L Occurences: 6(6) DHA_BACSH : 12- 26: keikn NEn--RVAmTPaGVvs-L thagh DHA_BACST : 12- 26: keikn NEn--RVAiTPaGVmt-L vkagh DHA_MYCTU : 12- 28: tetkn NEfqfRVAiTPaGVae-L trrgh NNTM_BOVIN : 68- 82: keifq NEk--RVAlSPaGVqa-L vkqgf PNTA_ECOLI : 12- 26: rerlt NEt--RVAaTPkTVeq-L lklgf PNTA_ECOLI : 12- 27: rerlt NEt--RVAaTPkTVeqlL klgft PNTA_HAEIN : 12- 27: relle NEs--RVAaTPkTVqqiL klgfd S 19: 34.0662 7( 6) E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x(2,3)-L Occurences: 7(6) DHA_BACSH : 13- 26: eiknn En--RVAmTPaGVvs-L thagh DHA_BACST : 13- 26: eiknn En--RVAiTPaGVmt-L vkagh DHA_MYCTU : 13- 28: etknn EfqfRVAiTPaGVae-L trrgh NNTM_BOVIN : 69- 82: eifqn Ek--RVAlSPaGVqa-L vkqgf PNTA_ECOLI : 13- 26: erltn Et--RVAaTPkTVeq-L lklgf PNTA_ECOLI : 13- 27: erltn Et--RVAaTPkTVeqlL klgft PNTA_HAEIN : 11- 27: prell EnesRVAaTPkTVqqiL klgfd PNTA_HAEIN : 13- 27: ellen Es--RVAaTPkTVqqiL klgfd T 20: 34.0662 8( 6) N-x(2,4)-R-V-A-x-[ST]-P-x-[GT]-V-x(2,3)-L Occurences: 8(6) DHA_BACSH : 11- 26: pkeik Nnen-RVAmTPaGVvs-L thagh DHA_BACSH : 12- 26: keikn Nen--RVAmTPaGVvs-L thagh DHA_BACST : 11- 26: pkeik Nnen-RVAiTPaGVmt-L vkagh DHA_BACST : 12- 26: keikn Nen--RVAiTPaGVmt-L vkagh DHA_MYCTU : 12- 28: tetkn NefqfRVAiTPaGVae-L trrgh NNTM_BOVIN : 68- 82: keifq Nek--RVAlSPaGVqa-L vkqgf PNTA_ECOLI : 12- 26: rerlt Net--RVAaTPkTVeq-L lklgf PNTA_ECOLI : 12- 27: rerlt Net--RVAaTPkTVeqlL klgft PNTA_HAEIN : 12- 27: relle Nes--RVAaTPkTVqqiL klgfd Number of patterns evaluated by Pratt:21461 Total running time: 11 seconds