------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file ALADH_PNT_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ALADH_PNT_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DHA_BACSH 372 DHA_BACST 372 DHA_MYCTU 373 NNTM_BOVIN 1086 PNTA_ECOLI 510 Pratt run started at Thu Feb 6 18:34:11 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 44.8706 5( 5) P-x-E-x(3)-N-E-x(1,3)-R-V-A-x(2)-P-x(2)-V-x(2)-L-x(3)-G 2: 44.3706 5( 5) G-x(2,3)-E-x(3)-N-E-x(1,3)-R-V-A-x(2)-P-x(2)-V-x(2)-L-x(3)-G 3: 40.7005 5( 5) E-x(3)-N-E-x(1,3)-R-V-A-x(2)-P-x(2)-V-x(2)-L-x(3)-G 4: 36.5305 5( 5) N-E-x(1,3)-R-V-A-x(2)-P-x(2)-V-x(2)-L-x(3)-G 5: 36.0305 8( 5) N-x(0,1)-E-x(1,3)-R-V-A-x(2)-P-x(2)-V-x(2)-L-x(3)-G 6: 32.3604 5( 5) M-x(2)-G-x-V-x(0,1)-V-x(0,1)-D-x-A-x(3)-G-G 7: 32.3604 5( 5) E-x(1,3)-R-V-A-x(2)-P-x(2)-V-x(2)-L-x(3)-G 8: 29.1904 5( 5) G-x-V-x-V-D-x-A-x(3)-G-G 9: 29.1904 5( 5) R-V-A-x(2)-P-x(2)-V-x(2)-L-x(3)-G 10: 28.1904 5( 5) G-x-V-x(0,1)-V-x(0,1)-D-x-A-x(3)-G-G 11: 27.6904 5( 5) A-x(3)-A-A-x(3,4)-G-x(0,2)-A-x-V-x(3)-D 12: 27.6904 5( 5) G-x(5)-A-A-x(3,4)-G-x(0,2)-A-x-V-x(3)-D 13: 27.6904 5( 5) G-x-G-x-A-G-x(2,3)-A-x(0,2)-A-x(4)-G 14: 25.0203 5( 5) V-x-V-D-x-A-x(3)-G-G 15: 25.0203 5( 5) V-A-x(2)-P-x(2)-V-x(2)-L-x(3)-G 16: 25.0203 5( 5) V-x(4)-A-G-V-x(2)-L-x(3)-G 17: 24.5203 7( 5) V-x(0,1)-V-D-x-A-x(3)-G-G 18: 24.0203 7( 5) V-x(0,1)-V-x(0,1)-D-x-A-x(3)-G-G 19: 24.0203 5( 5) D-x(4,5)-A-x(0,1)-L-x-P-G-x(2)-A 20: 24.0203 7( 5) G-x(2,3)-S-x(2,3)-D-x(5)-A-G-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 89.3398 5( 5) P-x-E-x(2)-[NQT]-N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] B 2: 88.8398 5( 5) G-x(2,3)-E-x(2)-[NQT]-N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] C 3: 85.1698 5( 5) E-x(2)-[NQT]-N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] D 4: 78.3871 5( 5) N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] E 5: 78.3331 5( 5) D-x(4,5)-A-x(0,1)-L-[IV]-P-G-x(2)-A-x(2)-[LV]-x-[ENST]-x(2)-[LMV]-x-[ADEQS]-x(4)-[GS]-[ASV]-[LV]-[ILV]-[DV]-x-[AIL]-[AI]-x-[DEQ]-[AGNQ]-G-[GI]-x(2)-[AET]-x-[DST]-x(2)-[GTV] F 6: 77.8871 8( 5) N-x(0,1)-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] G 7: 74.2171 5( 5) E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] H 8: 71.0470 5( 5) R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] I 9: 67.6239 5( 5) G-x-A-[AGS]-x-[GN]-A-A-x(3,4)-G-x(0,2)-A-x-V-x-[AGIV]-[FIL]-D-x-[NRS]-[AIP]-[ADE]-x(2)-[ER]-[EQ]-[FLV]-x-[ADS]-x(2)-[ACG]-x(2)-[ILV] J 10: 66.8770 5( 5) V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] K 11: 63.4538 5( 5) A-[AGS]-x-[GN]-A-A-x(3,4)-G-x(0,2)-A-x-V-x-[AGIV]-[FIL]-D-x-[NRS]-[AIP]-[ADE]-x(2)-[ER]-[EQ]-[FLV]-x-[ADS]-x(2)-[ACG]-x(2)-[ILV] L 12: 63.4389 5( 5) V-x-[ILMV]-x-[GP]-A-G-V-x-[AEGST]-L-[ATV]-x(2)-G-x-[AEN]-x(2)-[AILV]-x-[AEST]-x-[AGV]-x-[AEG]-x-[DGS]-x(3)-[DET]-[ADSV]-x(4)-[AQ]-[AGS]-x-[AGQ] M 13: 59.5938 5( 5) M-x(2)-G-[AS]-V-x(0,1)-V-x(0,1)-D-[IL]-A-[AI]-[DEQ]-[ANQ]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV]-[ET] N 14: 55.9065 5( 5) G-x-V-[ILV]-V-D-[IL]-A-[AI]-[DEQ]-[ANQ]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV]-[ET] O 15: 55.4238 5( 5) G-[AS]-V-x(0,1)-V-x(0,1)-D-[IL]-A-[AI]-[DEQ]-[ANQ]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV]-[ET] P 16: 55.0809 5( 5) G-[AG]-G-x-A-G-x(2,3)-A-x(0,2)-A-x(2)-[AGS]-x-G-x-[GI]-[AV]-x-[AGV]-x(3)-[DR]-[AILP]-[AENS]-[AIPV]-x-[EKR] Q 17: 51.7364 5( 5) V-[ILV]-V-D-[IL]-A-[AI]-[DEQ]-[ANQ]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV]-[ET] R 18: 48.5746 7( 5) V-x(0,1)-V-D-[IL]-A-[AI]-[DEQ]-[ANQ]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV]-[ET] S 19: 48.0746 7( 5) V-x(0,1)-V-x(0,1)-D-[IL]-A-[AI]-[DEQ]-[ANQ]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV]-[ET] T 20: 29.8790 7( 5) G-x(2,3)-S-x(2,3)-D-x(2)-[FY]-x(2)-A-G-A-[AEQ] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 89.3398 5( 5) P-x-E-x(2)-[NQT]-N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] Occurences: 5(5) DHA_BACSH : 6- 47: mkigi PkEikNNEn--RVAmTPaGVvSLtHaGHErlAiETGGGIGssfT daeyv DHA_BACST : 6- 47: mkigi PkEikNNEn--RVAiTPaGVmTLvKaGHEvyVeTEGGAGSgfsD seyek DHA_MYCTU : 6- 49: mrvgi PtEtkNNEfqfRVAiTPaGVaELtRrGHEvlIqAGAGEGSaitD adfka NNTM_BOVIN : 62- 103: ltvgv PkEifQNEk--RVAlSPaGVqALvKqGFNvvVeSGAGEASkfsD dhyra PNTA_ECOLI : 6- 47: mrigi PrErlTNEt--RVAaTPkTVeQLlKlGFTvaVeSGAGQLAsfdD kafvq B 2: 88.8398 5( 5) G-x(2,3)-E-x(2)-[NQT]-N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] Occurences: 5(5) DHA_BACSH : 4- 47: mki GipkEikNNEn--RVAmTPaGVvSLtHaGHErlAiETGGGIGssfT daeyv DHA_BACST : 4- 47: mki GipkEikNNEn--RVAiTPaGVmTLvKaGHEvyVeTEGGAGSgfsD seyek DHA_MYCTU : 4- 49: mrv GiptEtkNNEfqfRVAiTPaGVaELtRrGHEvlIqAGAGEGSaitD adfka NNTM_BOVIN : 60- 103: kqltv GvpkEifQNEk--RVAlSPaGVqALvKqGFNvvVeSGAGEASkfsD dhyra PNTA_ECOLI : 4- 47: mri GiprErlTNEt--RVAaTPkTVeQLlKlGFTvaVeSGAGQLAsfdD kafvq C 3: 85.1698 5( 5) E-x(2)-[NQT]-N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] Occurences: 5(5) DHA_BACSH : 8- 47: igipk EikNNEn--RVAmTPaGVvSLtHaGHErlAiETGGGIGssfT daeyv DHA_BACST : 8- 47: igipk EikNNEn--RVAiTPaGVmTLvKaGHEvyVeTEGGAGSgfsD seyek DHA_MYCTU : 8- 49: vgipt EtkNNEfqfRVAiTPaGVaELtRrGHEvlIqAGAGEGSaitD adfka NNTM_BOVIN : 64- 103: vgvpk EifQNEk--RVAlSPaGVqALvKqGFNvvVeSGAGEASkfsD dhyra PNTA_ECOLI : 8- 47: igipr ErlTNEt--RVAaTPkTVeQLlKlGFTvaVeSGAGQLAsfdD kafvq D 4: 78.3871 5( 5) N-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] Occurences: 5(5) DHA_BACSH : 12- 47: keikn NEn--RVAmTPaGVvSLtHaGHErlAiETGGGIGssfT daeyv DHA_BACST : 12- 47: keikn NEn--RVAiTPaGVmTLvKaGHEvyVeTEGGAGSgfsD seyek DHA_MYCTU : 12- 49: tetkn NEfqfRVAiTPaGVaELtRrGHEvlIqAGAGEGSaitD adfka NNTM_BOVIN : 68- 103: keifq NEk--RVAlSPaGVqALvKqGFNvvVeSGAGEASkfsD dhyra PNTA_ECOLI : 12- 47: rerlt NEt--RVAaTPkTVeQLlKlGFTvaVeSGAGQLAsfdD kafvq E 5: 78.3331 5( 5) D-x(4,5)-A-x(0,1)-L-[IV]-P-G-x(2)-A-x(2)-[LV]-x-[ENST]-x(2)-[LMV]-x-[ADEQS]-x(4)-[GS]-[ASV]-[LV]-[ILV]-[DV]-x-[AIL]-[AI]-x-[DEQ]-[AGNQ]-G-[GI]-x(2)-[AET]-x-[DST]-x(2)-[GTV] Occurences: 5(5) DHA_BACSH : 233- 281: svkhs Dlvvg-AvLIPGakApkLvSeeMiQsmqpGSVVVdIAiDQGGifAtSdrV tthdd DHA_BACST : 233- 281: cvres Dlvvg-AvLIPGakAklVtEemVrSmtpgSVLVDiAIdQGGIfeTtDrvT thddp DHA_MYCTU : 235- 283: avkra Dlvig-AvLVPGakApkLvSnsLvAhmkpGAVLVdIAiDQGGcfEgSrpT tydhp NNTM_BOVIN : 312- 360: qckev DilistA-LIPGkkApiLfNkeMiEsmkeGSVVVdLAaEAGGnfEtTkpG elyvh PNTA_ECOLI : 250- 298: qakev DiivttA-LIPGkpApkLiTreMvDsmkaGSVIVdLAaQNGGncEyTvpG eiftt F 6: 77.8871 8( 5) N-x(0,1)-E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] Occurences: 8(5) DHA_BACSH : 11- 47: pkeik NnEn--RVAmTPaGVvSLtHaGHErlAiETGGGIGssfT daeyv DHA_BACSH : 12- 47: keikn N-En--RVAmTPaGVvSLtHaGHErlAiETGGGIGssfT daeyv DHA_BACST : 11- 47: pkeik NnEn--RVAiTPaGVmTLvKaGHEvyVeTEGGAGSgfsD seyek DHA_BACST : 12- 47: keikn N-En--RVAiTPaGVmTLvKaGHEvyVeTEGGAGSgfsD seyek DHA_MYCTU : 11- 49: ptetk NnEfqfRVAiTPaGVaELtRrGHEvlIqAGAGEGSaitD adfka DHA_MYCTU : 12- 49: tetkn N-EfqfRVAiTPaGVaELtRrGHEvlIqAGAGEGSaitD adfka NNTM_BOVIN : 68- 103: keifq N-Ek--RVAlSPaGVqALvKqGFNvvVeSGAGEASkfsD dhyra PNTA_ECOLI : 12- 47: rerlt N-Et--RVAaTPkTVeQLlKlGFTvaVeSGAGQLAsfdD kafvq G 7: 74.2171 5( 5) E-x(1,3)-R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] Occurences: 5(5) DHA_BACSH : 13- 47: eiknn En--RVAmTPaGVvSLtHaGHErlAiETGGGIGssfT daeyv DHA_BACST : 13- 47: eiknn En--RVAiTPaGVmTLvKaGHEvyVeTEGGAGSgfsD seyek DHA_MYCTU : 13- 49: etknn EfqfRVAiTPaGVaELtRrGHEvlIqAGAGEGSaitD adfka NNTM_BOVIN : 69- 103: eifqn Ek--RVAlSPaGVqALvKqGFNvvVeSGAGEASkfsD dhyra PNTA_ECOLI : 13- 47: erltn Et--RVAaTPkTVeQLlKlGFTvaVeSGAGQLAsfdD kafvq H 8: 71.0470 5( 5) R-V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] Occurences: 5(5) DHA_BACSH : 15- 47: knnen RVAmTPaGVvSLtHaGHErlAiETGGGIGssfT daeyv DHA_BACST : 15- 47: knnen RVAiTPaGVmTLvKaGHEvyVeTEGGAGSgfsD seyek DHA_MYCTU : 17- 49: nefqf RVAiTPaGVaELtRrGHEvlIqAGAGEGSaitD adfka NNTM_BOVIN : 71- 103: fqnek RVAlSPaGVqALvKqGFNvvVeSGAGEASkfsD dhyra PNTA_ECOLI : 15- 47: ltnet RVAaTPkTVeQLlKlGFTvaVeSGAGQLAsfdD kafvq I 9: 67.6239 5( 5) G-x-A-[AGS]-x-[GN]-A-A-x(3,4)-G-x(0,2)-A-x-V-x-[AGIV]-[FIL]-D-x-[NRS]-[AIP]-[ADE]-x(2)-[ER]-[EQ]-[FLV]-x-[ADS]-x(2)-[ACG]-x(2)-[ILV] Occurences: 5(5) DHA_BACSH : 177- 215: tvigg GiAGtNAAkiavGmgAdVtVIDlSPErlRQLeDmfGrdV qtlms DHA_BACST : 177- 215: tiigg GtAGtNAAkigvGlgAdVtILDiNAErlRELdDlfGdhV ttlms DHA_MYCTU : 179- 217: vviga GtAGyNAArianGmgAtVtVLDiNIDklRQLdAefCgrI htrys NNTM_BOVIN : 239- 274: gggva GlASaGAAksm-G--AiVrGFDtRAAalEQFkSlgAepL evdlk PNTA_ECOLI : 177- 212: gagva GlAAiGAAnsl-G--AiVrAFDtRPEvkEQVqSmgAefL eldfk J 10: 66.8770 5( 5) V-A-x-[ST]-P-x-[GT]-V-x-[AEQST]-L-x-[HKR]-x-G-[FH]-[ENT]-x(2)-[AIV]-x-[AEST]-[EGT]-[AG]-G-[AEGQ]-[AGIL]-[AGS]-x(3)-[DT] Occurences: 5(5) DHA_BACSH : 16- 47: nnenr VAmTPaGVvSLtHaGHErlAiETGGGIGssfT daeyv DHA_BACST : 16- 47: nnenr VAiTPaGVmTLvKaGHEvyVeTEGGAGSgfsD seyek DHA_MYCTU : 18- 49: efqfr VAiTPaGVaELtRrGHEvlIqAGAGEGSaitD adfka NNTM_BOVIN : 72- 103: qnekr VAlSPaGVqALvKqGFNvvVeSGAGEASkfsD dhyra PNTA_ECOLI : 16- 47: tnetr VAaTPkTVeQLlKlGFTvaVeSGAGQLAsfdD kafvq K 11: 63.4538 5( 5) A-[AGS]-x-[GN]-A-A-x(3,4)-G-x(0,2)-A-x-V-x-[AGIV]-[FIL]-D-x-[NRS]-[AIP]-[ADE]-x(2)-[ER]-[EQ]-[FLV]-x-[ADS]-x(2)-[ACG]-x(2)-[ILV] Occurences: 5(5) DHA_BACSH : 179- 215: igggi AGtNAAkiavGmgAdVtVIDlSPErlRQLeDmfGrdV qtlms DHA_BACST : 179- 215: igggt AGtNAAkigvGlgAdVtILDiNAErlRELdDlfGdhV ttlms DHA_MYCTU : 181- 217: igagt AGyNAArianGmgAtVtVLDiNIDklRQLdAefCgrI htrys NNTM_BOVIN : 241- 274: gvagl ASaGAAksm-G--AiVrGFDtRAAalEQFkSlgAepL evdlk PNTA_ECOLI : 179- 212: gvagl AAiGAAnsl-G--AiVrAFDtRPEvkEQVqSmgAefL eldfk L 12: 63.4389 5( 5) V-x-[ILMV]-x-[GP]-A-G-V-x-[AEGST]-L-[ATV]-x(2)-G-x-[AEN]-x(2)-[AILV]-x-[AEST]-x-[AGV]-x-[AEG]-x-[DGS]-x(3)-[DET]-[ADSV]-x(4)-[AQ]-[AGS]-x-[AGQ] Occurences: 5(5) DHA_BACSH : 16- 56: nnenr VaMtPAGVvSLThaGhErlAiEtGgGiGssfTDaeyvAAgA ayrci DHA_BACST : 16- 56: nnenr VaItPAGVmTLVkaGhEvyVeTeGgAgSgfsDSeyekAGaA drcrt DHA_MYCTU : 18- 58: efqfr VaItPAGVaELTrrGhEvlIqAgAgEgSaitDAdfkaAGaQ lvgta NNTM_BOVIN : 72- 112: qnekr VaLsPAGVqALVkqGfNvvVeSgAgEaSkfsDDhyraAGaQ iqgak PNTA_ECOLI : 168- 208: vppak VmViGAGVaGLAaiGaAnsLgAiVrAfDtrpEVkeqvQSmG aefle M 13: 59.5938 5( 5) M-x(2)-G-[AS]-V-x(0,1)-V-x(0,1)-D-[IL]-A-[AI]-[DEQ]-[ANQ]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV]-[ET] Occurences: 5(5) DHA_BACSH : 258- 282: emiqs MqpGSVvV-DIAIDQGGifAtSdrVT thddp DHA_BACSH : 258- 282: emiqs MqpGSV-VvDIAIDQGGifAtSdrVT thddp DHA_BACST : 257- 281: emvrs MtpGSVlV-DIAIDQGGifEtTdrVT thddp DHA_MYCTU : 260- 284: slvah MkpGAVlV-DIAIDQGGcfEgSrpTT ydhpt NNTM_BOVIN : 337- 361: emies MkeGSVvV-DLAAEAGGnfEtTkpGE lyvhk NNTM_BOVIN : 337- 361: emies MkeGSV-VvDLAAEAGGnfEtTkpGE lyvhk PNTA_ECOLI : 275- 299: emvds MkaGSViV-DLAAQNGGncEyTvpGE iftte N 14: 55.9065 5( 5) G-x-V-[ILV]-V-D-[IL]-A-[AI]-[DEQ]-[ANQ]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV]-[ET] Occurences: 5(5) DHA_BACSH : 261- 282: qsmqp GsVVVDIAIDQGGifAtSdrVT thddp DHA_BACST : 260- 281: rsmtp GsVLVDIAIDQGGifEtTdrVT thddp DHA_MYCTU : 263- 284: ahmkp GaVLVDIAIDQGGcfEgSrpTT ydhpt NNTM_BOVIN : 340- 361: esmke GsVVVDLAAEAGGnfEtTkpGE lyvhk PNTA_ECOLI : 278- 299: dsmka GsVIVDLAAQNGGncEyTvpGE iftte O 15: 55.4238 5( 5) G-[AS]-V-x(0,1)-V-x(0,1)-D-[IL]-A-[AI]-[DEQ]-[ANQ]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV]-[ET] Occurences: 5(5) DHA_BACSH : 261- 282: qsmqp GSVvV-DIAIDQGGifAtSdrVT thddp DHA_BACSH : 261- 282: qsmqp GSV-VvDIAIDQGGifAtSdrVT thddp DHA_BACST : 260- 281: rsmtp GSVlV-DIAIDQGGifEtTdrVT thddp DHA_MYCTU : 263- 284: ahmkp GAVlV-DIAIDQGGcfEgSrpTT ydhpt NNTM_BOVIN : 340- 361: esmke GSVvV-DLAAEAGGnfEtTkpGE lyvhk NNTM_BOVIN : 340- 361: esmke GSV-VvDLAAEAGGnfEtTkpGE lyvhk PNTA_ECOLI : 278- 299: dsmka GSViV-DLAAQNGGncEyTvpGE iftte P 16: 55.0809 5( 5) G-[AG]-G-x-A-G-x(2,3)-A-x(0,2)-A-x(2)-[AGS]-x-G-x-[GI]-[AV]-x-[AGV]-x(3)-[DR]-[AILP]-[AENS]-[AIPV]-x-[EKR] Occurences: 5(5) DHA_BACSH : 175- 203: kvtvi GGGiAGtn-A--AkiAvGmGAdVtviDLSPeR lrqle DHA_BACST : 175- 203: kvtii GGGtAGtn-A--AkiGvGlGAdVtilDINAeR lreld DHA_MYCTU : 177- 205: dvvvi GAGtAGyn-A--AriAnGmGAtVtvlDINIdK lrqld NNTM_BOVIN : 234- 264: kiliv GGGvAGlasAg-AakSmGaIVrGfdtRAAAlE qfksl PNTA_ECOLI : 172- 202: kvmvi GAGvAGla-AigAanSlGaIVrAfdtRPEVkE qvqsm Q 17: 51.7364 5( 5) V-[ILV]-V-D-[IL]-A-[AI]-[DEQ]-[ANQ]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV]-[ET] Occurences: 5(5) DHA_BACSH : 263- 282: mqpgs VVVDIAIDQGGifAtSdrVT thddp DHA_BACST : 262- 281: mtpgs VLVDIAIDQGGifEtTdrVT thddp DHA_MYCTU : 265- 284: mkpga VLVDIAIDQGGcfEgSrpTT ydhpt NNTM_BOVIN : 342- 361: mkegs VVVDLAAEAGGnfEtTkpGE lyvhk PNTA_ECOLI : 280- 299: mkags VIVDLAAQNGGncEyTvpGE iftte R 18: 48.5746 7( 5) V-x(0,1)-V-D-[IL]-A-[AI]-[DEQ]-[ANQ]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV]-[ET] Occurences: 7(5) DHA_BACSH : 263- 282: mqpgs VvVDIAIDQGGifAtSdrVT thddp DHA_BACSH : 264- 282: qpgsv V-VDIAIDQGGifAtSdrVT thddp DHA_BACST : 262- 281: mtpgs VlVDIAIDQGGifEtTdrVT thddp DHA_MYCTU : 265- 284: mkpga VlVDIAIDQGGcfEgSrpTT ydhpt NNTM_BOVIN : 342- 361: mkegs VvVDLAAEAGGnfEtTkpGE lyvhk NNTM_BOVIN : 343- 361: kegsv V-VDLAAEAGGnfEtTkpGE lyvhk PNTA_ECOLI : 280- 299: mkags ViVDLAAQNGGncEyTvpGE iftte S 19: 48.0746 7( 5) V-x(0,1)-V-x(0,1)-D-[IL]-A-[AI]-[DEQ]-[ANQ]-G-G-x(2)-[AE]-x-[ST]-x(2)-[GTV]-[ET] Occurences: 7(5) DHA_BACSH : 263- 282: mqpgs VvV-DIAIDQGGifAtSdrVT thddp DHA_BACSH : 263- 282: mqpgs V-VvDIAIDQGGifAtSdrVT thddp DHA_BACSH : 264- 282: qpgsv V-V-DIAIDQGGifAtSdrVT thddp DHA_BACST : 262- 281: mtpgs VlV-DIAIDQGGifEtTdrVT thddp DHA_MYCTU : 265- 284: mkpga VlV-DIAIDQGGcfEgSrpTT ydhpt NNTM_BOVIN : 342- 361: mkegs VvV-DLAAEAGGnfEtTkpGE lyvhk NNTM_BOVIN : 342- 361: mkegs V-VvDLAAEAGGnfEtTkpGE lyvhk NNTM_BOVIN : 343- 361: kegsv V-V-DLAAEAGGnfEtTkpGE lyvhk PNTA_ECOLI : 280- 299: mkags ViV-DLAAQNGGncEyTvpGE iftte T 20: 29.8790 7( 5) G-x(2,3)-S-x(2,3)-D-x(2)-[FY]-x(2)-A-G-A-[AEQ] Occurences: 7(5) DHA_BACSH : 40- 57: aietg GgigSsftDaeYvaAGAA yrcig DHA_BACSH : 41- 57: ietgg GigsSft-DaeYvaAGAA yrcig DHA_BACSH : 41- 57: ietgg Gig-SsftDaeYvaAGAA yrcig DHA_BACST : 39- 56: yvete GgagSgfsDseYekAGAA drcrt DHA_BACST : 40- 56: veteg Gag-SgfsDseYekAGAA drcrt DHA_MYCTU : 42- 58: iqaga Geg-SaitDadFkaAGAQ lvgta NNTM_BOVIN : 96- 112: vesga Gea-SkfsDdhYraAGAQ iqgak PNTA_ECOLI : 40- 56: vesga GqlaSfd-DkaFvqAGAE ivegn Number of patterns evaluated by Pratt:24526 Total running time: 11 seconds