------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 21 sequences from file AKH PATTERN CONSERVATION: CM: min Nr of Seqs to Match 21 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename AKH.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AKH1_SCHGR 63 AKH1_SCHNI 63 AKH2_LOCMI 8 AKH2_SCHGR 39 AKH2_SCHNI 61 AKH3_LOCMI 8 AKHD_DROME 79 AKHG_GRYBI 8 AKH_LIBAU 8 AKH_MANSE 65 AKH_MELML 8 AKH_TABAT 8 HTF1_PERAM 8 HTF1_ROMMI 10 HTF2_CARMO 10 HTF2_PERAM 8 HTF_HELZE 10 HTF_NAUCI 10 HTF_TABAT 10 HTF_TENMO 8 RPCH_PANBO 8 Pratt run started at Thu Feb 6 18:34:11 1997 No patterns found