------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file AIPM_HOMOCIT_SYNTH_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename AIPM_HOMOCIT_SYNTH_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: LEU1_CORGL 616 LEU1_ECOLI 522 LEU1_HAEIN 515 LEU1_LACLA 513 LEU1_SALTY 521 LEU1_YEAST 619 NIFV_AZOCH 382 NIFV_AZOVI 385 NIFV_KLEPN 381 NIFV_RHOCA 382 NIFV_RHOSH 391 NIVA_CLOPA 269 Pratt run started at Thu Feb 6 18:34:00 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 24.0203 12( 12) D-x(0,2)-L-R-D-G-x-Q 2: 20.8503 12( 12) G-x-G-E-R-x(2)-N 3: 20.8503 12( 12) L-R-D-G-x-Q 4: 16.6802 12( 12) G-E-R-x(2)-N 5: 16.6802 12( 12) H-x-H-x-D-x-G 6: 16.6802 13( 12) R-D-G-x-Q 7: 14.6802 15( 12) N-x(1,3)-A-A-x(2,4)-A 8: 12.5102 13( 12) E-R-x(2)-N 9: 12.5102 12( 12) H-x-D-x-G 10: 12.5102 13( 12) D-G-x-Q 11: 12.0102 19( 12) E-x(3)-I-x(2,3)-L 12: 12.0102 19( 12) E-x(2,3)-I-x(3)-L 13: 12.0102 14( 12) E-K-x(2,3)-I 14: 12.0102 21( 12) E-x(3,4)-I-x(3)-L 15: 12.0102 18( 12) E-R-x(1,2)-G 16: 12.0102 20( 12) E-x-A-x(1,2)-N 17: 12.0102 20( 12) E-x(0,1)-A-x-N 18: 12.0102 30( 12) A-G-x(0,1)-A 19: 12.0102 38( 12) A-x(2)-A-x(0,1)-A 20: 12.0102 26( 12) A-x(2,3)-G-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 90.8061 12( 12) H-[ACGPTV]-H-[DN]-D-x-G-x-[AG]-x-[AGS]-[AN]-[AST]-x(2)-[AG]-x(2)-[AGN]-G-A-x(2)-[AILV]-[DENS]-[CGTV]-[ACT]-[ILMV]-x-G-x-G-E-R-[AT]-[AG]-N-[ACTV]-[ACDS] B 2: 84.9812 12( 12) H-[DN]-D-x-G-x-[AG]-x-[AGS]-[AN]-[AST]-x(2)-[AG]-x(2)-[AGN]-G-A-x(2)-[AILV]-[DENS]-[CGTV]-[ACT]-[ILMV]-x-G-x-G-E-R-[AT]-[AG]-N-[ACTV]-[ACDS] C 3: 41.6659 12( 12) D-x(0,2)-L-R-D-G-[EN]-Q-x-[ALP]-x(2)-[APS]-[FLM]-x(3)-[DEQR]-K D 4: 38.4959 12( 12) L-R-D-G-[EN]-Q-x-[ALP]-x(2)-[APS]-[FLM]-x(3)-[DEQR]-K E 5: 34.3258 12( 12) R-D-G-[EN]-Q-x-[ALP]-x(2)-[APS]-[FLM]-x(3)-[DEQR]-K F 6: 31.7217 12( 12) G-x-G-E-R-[AT]-[AG]-N-[ACTV]-[ACDS] G 7: 30.1558 12( 12) D-G-[EN]-Q-x-[ALP]-x(2)-[APS]-[FLM]-x(3)-[DEQR]-K H 8: 27.5516 12( 12) G-E-R-[AT]-[AG]-N-[ACTV]-[ACDS] I 9: 23.3816 12( 12) E-R-[AT]-[AG]-N-[ACTV]-[ACDS] J 10: 20.9479 15( 12) A-G-x(0,1)-A-x(2)-[AILV]-[ADEN]-x(4)-[GIPV]-x(4)-[ADPT] K 11: 14.6923 15( 12) E-x-A-x(1,2)-N-[ACV] L 12: 14.6802 15( 12) N-x(1,3)-A-A-x(2,4)-A M 13: 12.0102 19( 12) E-x(3)-I-x(2,3)-L N 14: 12.0102 19( 12) E-x(2,3)-I-x(3)-L O 15: 12.0102 14( 12) E-K-x(2,3)-I P 16: 12.0102 21( 12) E-x(3,4)-I-x(3)-L Q 17: 12.0102 18( 12) E-R-x(1,2)-G R 18: 12.0102 20( 12) E-x(0,1)-A-x-N S 19: 12.0102 30( 12) A-G-x(0,1)-A T 20: 12.0102 38( 12) A-x(2)-A-x(0,1)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 90.8061 12( 12) H-[ACGPTV]-H-[DN]-D-x-G-x-[AG]-x-[AGS]-[AN]-[AST]-x(2)-[AG]-x(2)-[AGN]-G-A-x(2)-[AILV]-[DENS]-[CGTV]-[ACT]-[ILMV]-x-G-x-G-E-R-[AT]-[AG]-N-[ACTV]-[ACDS] Occurences: 12(12) LEU1_CORGL : 280- 318: iilsl HPHNDrGtGvGAAelGymAGAdrIEGCLfGnGERTGNVC lvtla LEU1_ECOLI : 201- 239: aiisv HTHDDlGlAvGNSlaAvhAGArqVEGAMnGiGERAGNCS leevi LEU1_HAEIN : 202- 240: avisv HCHNDlGmAtANSltAvqNGArqIECTInGiGERAGNTS leevv LEU1_LACLA : 201- 239: iifsp HCHDDlGmAvANSlaAikAGAgrVEGTVnGiGERAGNAA leeia LEU1_SALTY : 201- 239: aiisv HTHDDlGiAvGNSlaAvhAGArqVEGAMnGiGERAGNCA leevi LEU1_YEAST : 275- 313: vcist HCHNDrGcGvAATelGmlAGAdrVEGCLfGnGERTGNVD lvtva NIFV_AZOCH : 192- 230: velev HAHDDfGlAtANTlaAvmGGAthINTTVnGlGERAANAA leecv NIFV_AZOVI : 193- 231: melev HAHDDfGlAtANTlaAvmGGAthINTTVnGlGERAGNAA leecv NIFV_KLEPN : 193- 231: geiem HAHNDlGmAtANTlaAvsAGAtsVNTTVlGlGERAGNAA awkps NIFV_RHOCA : 196- 234: lpiem HAHNDfGmAtANTimAahAGAthLSVTVnGlGERAGNAA ceevg NIFV_RHOSH : 208- 246: lpvef HGHNDlGmAtANSlaAarAGAshLSVTVnGlGERAGNAA leeva NIVA_CLOPA : 192- 230: idiei HVHNDfGmAiSNSfaAfkAGAkfADCTItGmGERAGNCD flkfv B 2: 84.9812 12( 12) H-[DN]-D-x-G-x-[AG]-x-[AGS]-[AN]-[AST]-x(2)-[AG]-x(2)-[AGN]-G-A-x(2)-[AILV]-[DENS]-[CGTV]-[ACT]-[ILMV]-x-G-x-G-E-R-[AT]-[AG]-N-[ACTV]-[ACDS] Occurences: 12(12) LEU1_CORGL : 282- 318: lslhp HNDrGtGvGAAelGymAGAdrIEGCLfGnGERTGNVC lvtla LEU1_ECOLI : 203- 239: isvht HDDlGlAvGNSlaAvhAGArqVEGAMnGiGERAGNCS leevi LEU1_HAEIN : 204- 240: isvhc HNDlGmAtANSltAvqNGArqIECTInGiGERAGNTS leevv LEU1_LACLA : 203- 239: fsphc HDDlGmAvANSlaAikAGAgrVEGTVnGiGERAGNAA leeia LEU1_SALTY : 203- 239: isvht HDDlGiAvGNSlaAvhAGArqVEGAMnGiGERAGNCA leevi LEU1_YEAST : 277- 313: isthc HNDrGcGvAATelGmlAGAdrVEGCLfGnGERTGNVD lvtva NIFV_AZOCH : 194- 230: levha HDDfGlAtANTlaAvmGGAthINTTVnGlGERAANAA leecv NIFV_AZOVI : 195- 231: levha HDDfGlAtANTlaAvmGGAthINTTVnGlGERAGNAA leecv NIFV_KLEPN : 195- 231: iemha HNDlGmAtANTlaAvsAGAtsVNTTVlGlGERAGNAA awkps NIFV_RHOCA : 198- 234: iemha HNDfGmAtANTimAahAGAthLSVTVnGlGERAGNAA ceevg NIFV_RHOSH : 210- 246: vefhg HNDlGmAtANSlaAarAGAshLSVTVnGlGERAGNAA leeva NIVA_CLOPA : 194- 230: ieihv HNDfGmAiSNSfaAfkAGAkfADCTItGmGERAGNCD flkfv C 3: 41.6659 12( 12) D-x(0,2)-L-R-D-G-[EN]-Q-x-[ALP]-x(2)-[APS]-[FLM]-x(3)-[DEQR]-K Occurences: 12(12) LEU1_CORGL : 73- 90: qwcav D--LRDGNQaLidPMspeRK rrmfe LEU1_ECOLI : 8- 27: qviif DttLRDGEQaLqaSLsvkEK lqial LEU1_HAEIN : 9- 28: rviif DttLRDGEQaLkaSLtvkEK lqial LEU1_LACLA : 8- 27: kieff DtsLRDGEQtPgvSFsisEK vtiak LEU1_SALTY : 8- 27: qviif DttLRDGEQaLqaSLsakEK lqial LEU1_YEAST : 67- 84: rwlst D--LRDGNQsLpdPMsveQK keyfh NIFV_AZOCH : 8- 27: sviid DttLRDGEQsAgvAFnadEK iairr NIFV_AZOVI : 8- 27: sviid DttLRDGEQsAgvAFnadEK iaiar NIFV_KLEPN : 8- 27: rvlin DttLRDGEQsPgvAFrtsEK vaiae NIFV_RHOCA : 11- 30: tlalc DttLRDGEQtAgvAFslaEK kaiar NIFV_RHOSH : 23- 42: pvalc DttLRDGEQtAgvAFtraEK raiae NIVA_CLOPA : 7- 26: giniv DttLRDGEQkAgiALsvqDK veiak D 4: 38.4959 12( 12) L-R-D-G-[EN]-Q-x-[ALP]-x(2)-[APS]-[FLM]-x(3)-[DEQR]-K Occurences: 12(12) LEU1_CORGL : 74- 90: wcavd LRDGNQaLidPMspeRK rrmfe LEU1_ECOLI : 11- 27: ifdtt LRDGEQaLqaSLsvkEK lqial LEU1_HAEIN : 12- 28: ifdtt LRDGEQaLkaSLtvkEK lqial LEU1_LACLA : 11- 27: ffdts LRDGEQtPgvSFsisEK vtiak LEU1_SALTY : 11- 27: ifdtt LRDGEQaLqaSLsakEK lqial LEU1_YEAST : 68- 84: wlstd LRDGNQsLpdPMsveQK keyfh NIFV_AZOCH : 11- 27: iddtt LRDGEQsAgvAFnadEK iairr NIFV_AZOVI : 11- 27: iddtt LRDGEQsAgvAFnadEK iaiar NIFV_KLEPN : 11- 27: indtt LRDGEQsPgvAFrtsEK vaiae NIFV_RHOCA : 14- 30: lcdtt LRDGEQtAgvAFslaEK kaiar NIFV_RHOSH : 26- 42: lcdtt LRDGEQtAgvAFtraEK raiae NIVA_CLOPA : 10- 26: ivdtt LRDGEQkAgiALsvqDK veiak E 5: 34.3258 12( 12) R-D-G-[EN]-Q-x-[ALP]-x(2)-[APS]-[FLM]-x(3)-[DEQR]-K Occurences: 12(12) LEU1_CORGL : 75- 90: cavdl RDGNQaLidPMspeRK rrmfe LEU1_ECOLI : 12- 27: fdttl RDGEQaLqaSLsvkEK lqial LEU1_HAEIN : 13- 28: fdttl RDGEQaLkaSLtvkEK lqial LEU1_LACLA : 12- 27: fdtsl RDGEQtPgvSFsisEK vtiak LEU1_SALTY : 12- 27: fdttl RDGEQaLqaSLsakEK lqial LEU1_YEAST : 69- 84: lstdl RDGNQsLpdPMsveQK keyfh NIFV_AZOCH : 12- 27: ddttl RDGEQsAgvAFnadEK iairr NIFV_AZOVI : 12- 27: ddttl RDGEQsAgvAFnadEK iaiar NIFV_KLEPN : 12- 27: ndttl RDGEQsPgvAFrtsEK vaiae NIFV_RHOCA : 15- 30: cdttl RDGEQtAgvAFslaEK kaiar NIFV_RHOSH : 27- 42: cdttl RDGEQtAgvAFtraEK raiae NIVA_CLOPA : 11- 26: vdttl RDGEQkAgiALsvqDK veiak F 6: 31.7217 12( 12) G-x-G-E-R-[AT]-[AG]-N-[ACTV]-[ACDS] Occurences: 12(12) LEU1_CORGL : 309- 318: egclf GnGERTGNVC lvtla LEU1_ECOLI : 230- 239: egamn GiGERAGNCS leevi LEU1_HAEIN : 231- 240: ectin GiGERAGNTS leevv LEU1_LACLA : 230- 239: egtvn GiGERAGNAA leeia LEU1_SALTY : 230- 239: egamn GiGERAGNCA leevi LEU1_YEAST : 304- 313: egclf GnGERTGNVD lvtva NIFV_AZOCH : 221- 230: nttvn GlGERAANAA leecv NIFV_AZOVI : 222- 231: nttvn GlGERAGNAA leecv NIFV_KLEPN : 222- 231: nttvl GlGERAGNAA awkps NIFV_RHOCA : 225- 234: svtvn GlGERAGNAA ceevg NIFV_RHOSH : 237- 246: svtvn GlGERAGNAA leeva NIVA_CLOPA : 221- 230: dctit GmGERAGNCD flkfv G 7: 30.1558 12( 12) D-G-[EN]-Q-x-[ALP]-x(2)-[APS]-[FLM]-x(3)-[DEQR]-K Occurences: 12(12) LEU1_CORGL : 76- 90: avdlr DGNQaLidPMspeRK rrmfe LEU1_ECOLI : 13- 27: dttlr DGEQaLqaSLsvkEK lqial LEU1_HAEIN : 14- 28: dttlr DGEQaLkaSLtvkEK lqial LEU1_LACLA : 13- 27: dtslr DGEQtPgvSFsisEK vtiak LEU1_SALTY : 13- 27: dttlr DGEQaLqaSLsakEK lqial LEU1_YEAST : 70- 84: stdlr DGNQsLpdPMsveQK keyfh NIFV_AZOCH : 13- 27: dttlr DGEQsAgvAFnadEK iairr NIFV_AZOVI : 13- 27: dttlr DGEQsAgvAFnadEK iaiar NIFV_KLEPN : 13- 27: dttlr DGEQsPgvAFrtsEK vaiae NIFV_RHOCA : 16- 30: dttlr DGEQtAgvAFslaEK kaiar NIFV_RHOSH : 28- 42: dttlr DGEQtAgvAFtraEK raiae NIVA_CLOPA : 12- 26: dttlr DGEQkAgiALsvqDK veiak H 8: 27.5516 12( 12) G-E-R-[AT]-[AG]-N-[ACTV]-[ACDS] Occurences: 12(12) LEU1_CORGL : 311- 318: clfgn GERTGNVC lvtla LEU1_ECOLI : 232- 239: amngi GERAGNCS leevi LEU1_HAEIN : 233- 240: tingi GERAGNTS leevv LEU1_LACLA : 232- 239: tvngi GERAGNAA leeia LEU1_SALTY : 232- 239: amngi GERAGNCA leevi LEU1_YEAST : 306- 313: clfgn GERTGNVD lvtva NIFV_AZOCH : 223- 230: tvngl GERAANAA leecv NIFV_AZOVI : 224- 231: tvngl GERAGNAA leecv NIFV_KLEPN : 224- 231: tvlgl GERAGNAA awkps NIFV_RHOCA : 227- 234: tvngl GERAGNAA ceevg NIFV_RHOSH : 239- 246: tvngl GERAGNAA leeva NIVA_CLOPA : 223- 230: titgm GERAGNCD flkfv I 9: 23.3816 12( 12) E-R-[AT]-[AG]-N-[ACTV]-[ACDS] Occurences: 12(12) LEU1_CORGL : 312- 318: lfgng ERTGNVC lvtla LEU1_ECOLI : 233- 239: mngig ERAGNCS leevi LEU1_HAEIN : 234- 240: ingig ERAGNTS leevv LEU1_LACLA : 233- 239: vngig ERAGNAA leeia LEU1_SALTY : 233- 239: mngig ERAGNCA leevi LEU1_YEAST : 307- 313: lfgng ERTGNVD lvtva NIFV_AZOCH : 224- 230: vnglg ERAANAA leecv NIFV_AZOVI : 225- 231: vnglg ERAGNAA leecv NIFV_KLEPN : 225- 231: vlglg ERAGNAA awkps NIFV_RHOCA : 228- 234: vnglg ERAGNAA ceevg NIFV_RHOSH : 240- 246: vnglg ERAGNAA leeva NIVA_CLOPA : 224- 230: itgmg ERAGNCD flkfv J 10: 20.9479 15( 12) A-G-x(0,1)-A-x(2)-[AILV]-[ADEN]-x(4)-[GIPV]-x(4)-[ADPT] Occurences: 15(12) LEU1_CORGL : 298- 314: elgym AG-AdrIEgclfGngerT gnvcl LEU1_ECOLI : 160- 176: eaain AG-AttINipdtVgytmP fefag LEU1_ECOLI : 219- 235: laavh AG-ArqVEgamnGigerA gncsl LEU1_HAEIN : 161- 177: eaain AG-AttVNipdtVgfclP neygn LEU1_LACLA : 160- 176: qtavd AG-AtyINipdtVgyttP eeygk LEU1_LACLA : 219- 235: laaik AG-AgrVEgtvnGigerA gnaal LEU1_SALTY : 160- 176: eaain AG-ArtINipdtVgytmP fefag LEU1_SALTY : 219- 235: laavh AG-ArqVEgamnGigerA gncal LEU1_YEAST : 293- 309: elgml AG-AdrVEgclfGngerT gnvdl NIFV_AZOCH : 18- 35: dgeqs AGvAfnADekiaIrralA elgvp NIFV_AZOVI : 18- 35: dgeqs AGvAfnADekiaIaralA elgvp NIFV_KLEPN : 211- 227: laavs AG-AtsVNttvlGlgerA gnaaa NIFV_RHOCA : 21- 38: dgeqt AGvAfsLAekkaIaralD ragva NIFV_RHOSH : 338- 355: khssa AGlAraLAeaglPadaaT laalm NIVA_CLOPA : 210- 226: faafk AG-AkfADctitGmgerA gncdf K 11: 14.6923 15( 12) E-x-A-x(1,2)-N-[ACV] Occurences: 15(12) LEU1_CORGL : 154- 159: tfeac EgAk-NV ivhfy LEU1_ECOLI : 155- 160: larvv EaAi-NA gatti LEU1_ECOLI : 233- 238: mngig ErAg-NC sleev LEU1_HAEIN : 156- 161: icriv EaAi-NA gattv LEU1_LACLA : 233- 238: vngig ErAg-NA aleei LEU1_SALTY : 155- 160: larvv EaAi-NA garti LEU1_SALTY : 233- 238: mngig ErAg-NC aleev LEU1_YEAST : 246- 252: lpatv EvAspNV yadqi NIFV_AZOCH : 224- 229: vnglg ErAa-NA aleec NIFV_AZOVI : 225- 230: vnglg ErAg-NA aleec NIFV_KLEPN : 151- 156: lraia EvAq-NA paarl NIFV_KLEPN : 225- 230: vlglg ErAg-NA aawkp NIFV_RHOCA : 228- 233: vnglg ErAg-NA aceev NIFV_RHOSH : 240- 245: vnglg ErAg-NA aleev NIVA_CLOPA : 224- 229: itgmg ErAg-NC dflkf L 12: 14.6802 15( 12) N-x(1,3)-A-A-x(2,4)-A Occurences: 15(12) LEU1_CORGL : 531- 540: vdgrg NgplAAyan-A leklg LEU1_ECOLI : 212- 219: glavg Nsl-AAvh--A garqv LEU1_ECOLI : 212- 221: glavg Nsl-AAvhagA rqveg LEU1_HAEIN : 67- 76: arhik NarvAAlsr-A vdkdi LEU1_LACLA : 212- 219: gmava Nsl-AAik--A gagrv LEU1_LACLA : 212- 221: gmava Nsl-AAikagA grveg LEU1_SALTY : 212- 219: giavg Nsl-AAvh--A garqv LEU1_SALTY : 212- 221: giavg Nsl-AAvhagA rqveg LEU1_YEAST : 612- 619: evegk Na--AAsgs-A NIFV_AZOCH : 203- 212: glata Ntl-AAvmggA thint NIFV_AZOVI : 204- 213: glata Ntl-AAvmggA thint NIFV_AZOVI : 376- 385: lceqg NpelAAggm-A NIFV_KLEPN : 155- 164: aevaq Nap-AArlryA dtvgl NIFV_KLEPN : 204- 211: gmata Ntl-AAvs--A gatsv NIFV_KLEPN : 204- 213: gmata Ntl-AAvsagA tsvnt NIFV_KLEPN : 229- 237: gerag Na--AAwkpsA lgler NIFV_RHOCA : 207- 216: gmata NtimAAhag-A thlsv NIFV_RHOSH : 219- 226: gmata Nsl-AAar--A gashl NIFV_RHOSH : 219- 228: gmata NslaAArag-A shlsv NIFV_RHOSH : 219- 228: gmata Nsl-AAaragA shlsv NIVA_CLOPA : 203- 210: gmais Nsf-AAfk--A gakfa NIVA_CLOPA : 203- 212: gmais Nsf-AAfkagA kfadc M 13: 12.0102 19( 12) E-x(3)-I-x(2,3)-L Occurences: 19(12) LEU1_CORGL : 239- 246: mdptp EnpmIin-L pstve LEU1_CORGL : 509- 517: aqten EdasItaeL ihngk LEU1_ECOLI : 26- 34: slsvk EklqIalaL ermgv LEU1_ECOLI : 178- 186: ytmpf EfagIisgL yervp LEU1_HAEIN : 27- 35: sltvk EklqIalaL erlgv LEU1_LACLA : 26- 34: sfsis EkvtIakqL ekwri LEU1_LACLA : 178- 186: yttpe EygkIfkfL idntk LEU1_SALTY : 26- 34: slsak EklqIalaL ermgv LEU1_SALTY : 178- 186: ytmpf EfagIisgL yervp LEU1_YEAST : 233- 241: awept EenpIifnL patve LEU1_YEAST : 234- 241: wepte EnpiIfn-L patve NIFV_AZOCH : 26- 34: afnad EkiaIrraL aelgv NIFV_AZOVI : 26- 34: afnad EkiaIaraL aelgv NIFV_KLEPN : 26- 34: afrts EkvaIaeaL yaagi NIFV_KLEPN : 363- 371: spkdy ElvaIydeL cgesa NIFV_RHOCA : 29- 37: afsla EkkaIaraL dragv NIFV_RHOCA : 243- 251: vgaal EaggIdtgL dlcal NIFV_RHOSH : 41- 49: aftra EkraIaeaL qaagv NIVA_CLOPA : 260- 267: ieken EikkIlr-L nw N 14: 12.0102 19( 12) E-x(2,3)-I-x(3)-L Occurences: 19(12) LEU1_CORGL : 509- 517: aqten EdasItaeL ihngk LEU1_ECOLI : 26- 34: slsvk EklqIalaL ermgv LEU1_ECOLI : 178- 186: ytmpf EfagIisgL yervp LEU1_HAEIN : 27- 35: sltvk EklqIalaL erlgv LEU1_LACLA : 26- 34: sfsis EkvtIakqL ekwri LEU1_LACLA : 178- 186: yttpe EygkIfkfL idntk LEU1_SALTY : 26- 34: slsak EklqIalaL ermgv LEU1_SALTY : 178- 186: ytmpf EfagIisgL yervp LEU1_YEAST : 233- 241: awept EenpIifnL patve LEU1_YEAST : 234- 241: wepte Enp-IifnL patve NIFV_AZOCH : 26- 34: afnad EkiaIrraL aelgv NIFV_AZOVI : 26- 34: afnad EkiaIaraL aelgv NIFV_KLEPN : 26- 34: afrts EkvaIaeaL yaagi NIFV_KLEPN : 363- 371: spkdy ElvaIydeL cgesa NIFV_RHOCA : 29- 37: afsla EkkaIaraL dragv NIFV_RHOCA : 243- 251: vgaal EaggIdtgL dlcal NIFV_RHOSH : 41- 49: aftra EkraIaeaL qaagv NIFV_RHOSH : 114- 121: gvpvs Erq-IsakL gkdaa NIVA_CLOPA : 258- 265: diiek Ene-IkkiL rlnw O 15: 12.0102 14( 12) E-K-x(2,3)-I Occurences: 14(12) LEU1_CORGL : 125- 129: vreii EKgm-I pddvt LEU1_CORGL : 542- 546: yanal EKlg-I dveiq LEU1_ECOLI : 26- 30: slsvk EKlq-I alale LEU1_HAEIN : 27- 31: sltvk EKlq-I alale LEU1_LACLA : 26- 30: sfsis EKvt-I akqle LEU1_LACLA : 35- 39: iakql EKwr-I sviea LEU1_SALTY : 26- 30: slsak EKlq-I alale LEU1_YEAST : 268- 272: hiter EKvc-I sthch NIFV_AZOCH : 26- 30: afnad EKia-I rrala NIFV_AZOVI : 26- 30: afnad EKia-I arala NIFV_KLEPN : 26- 30: afrts EKva-I aealy NIFV_RHOCA : 29- 33: afsla EKka-I arald NIFV_RHOSH : 41- 45: aftra EKra-I aealq NIVA_CLOPA : 256- 261: fedii EKeneI kkilr P 16: 12.0102 21( 12) E-x(3,4)-I-x(3)-L Occurences: 21(12) LEU1_CORGL : 509- 517: aqten Edas-ItaeL ihngk LEU1_ECOLI : 26- 34: slsvk Eklq-IalaL ermgv LEU1_ECOLI : 178- 186: ytmpf Efag-IisgL yervp LEU1_HAEIN : 27- 35: sltvk Eklq-IalaL erlgv LEU1_LACLA : 26- 34: sfsis Ekvt-IakqL ekwri LEU1_LACLA : 55- 64: spdsf EavkqIadsL ndtav LEU1_LACLA : 177- 186: gyttp EeygkIfkfL idntk LEU1_LACLA : 178- 186: yttpe Eygk-IfkfL idntk LEU1_LACLA : 308- 317: vlkna EtyeiItpeL vgikh LEU1_SALTY : 26- 34: slsak Eklq-IalaL ermgv LEU1_SALTY : 178- 186: ytmpf Efag-IisgL yervp LEU1_YEAST : 233- 241: awept Eenp-IifnL patve NIFV_AZOCH : 26- 34: afnad Ekia-IrraL aelgv NIFV_AZOVI : 26- 34: afnad Ekia-IaraL aelgv NIFV_KLEPN : 26- 34: afrts Ekva-IaeaL yaagi NIFV_KLEPN : 298- 307: llrds EsyqsIapsL mgrsy NIFV_KLEPN : 363- 371: spkdy Elva-IydeL cgesa NIFV_RHOCA : 29- 37: afsla Ekka-IaraL dragv NIFV_RHOCA : 243- 251: vgaal Eagg-IdtgL dlcal NIFV_RHOSH : 41- 49: aftra Ekra-IaeaL qaagv NIVA_CLOPA : 256- 265: fedii EkeneIkkiL rlnw Q 17: 12.0102 18( 12) E-R-x(1,2)-G Occurences: 18(12) LEU1_CORGL : 312- 315: lfgng ERt-G nvclv LEU1_ECOLI : 35- 38: ialal ERm-G vdvme LEU1_ECOLI : 233- 236: mngig ERa-G ncsle LEU1_HAEIN : 36- 39: ialal ERl-G vdvme LEU1_HAEIN : 234- 237: ingig ERa-G ntsle LEU1_LACLA : 233- 236: vngig ERa-G naale LEU1_SALTY : 35- 38: ialal ERm-G vdvme LEU1_SALTY : 233- 236: mngig ERa-G ncale LEU1_YEAST : 307- 310: lfgng ERt-G nvdlv NIFV_AZOCH : 261- 265: isalv ERasG rqwpg NIFV_AZOVI : 225- 228: vnglg ERa-G naale NIFV_AZOVI : 262- 266: isalv ERasG rqvaw NIFV_KLEPN : 225- 228: vlglg ERa-G naaaw NIFV_KLEPN : 241- 245: salgl ERclG vetgv NIFV_RHOCA : 228- 231: vnglg ERa-G naace NIFV_RHOSH : 240- 243: vnglg ERa-G naale NIFV_RHOSH : 321- 324: adlrp ERf-G rshri NIVA_CLOPA : 224- 227: itgmg ERa-G ncdfl R 18: 12.0102 20( 12) E-x(0,1)-A-x-N Occurences: 20(12) LEU1_CORGL : 154- 158: tfeac EgAkN vivhf LEU1_ECOLI : 155- 159: larvv EaAiN agatt LEU1_ECOLI : 225- 229: garqv EgAmN giger LEU1_ECOLI : 233- 237: mngig ErAgN cslee LEU1_ECOLI : 420- 423: eevka E-AaN gngpv LEU1_HAEIN : 156- 160: icriv EaAiN agatt LEU1_HAEIN : 234- 238: ingig ErAgN tslee LEU1_LACLA : 233- 237: vngig ErAgN aalee LEU1_SALTY : 155- 159: larvv EaAiN agart LEU1_SALTY : 225- 229: garqv EgAmN giger LEU1_SALTY : 233- 237: mngig ErAgN calee LEU1_SALTY : 420- 423: eeika E-AaN gngpv LEU1_YEAST : 468- 471: sklfk E-AyN yndeq NIFV_AZOCH : 224- 228: vnglg ErAaN aalee NIFV_AZOVI : 225- 229: vnglg ErAgN aalee NIFV_KLEPN : 151- 155: lraia EvAqN apaar NIFV_KLEPN : 225- 229: vlglg ErAgN aaawk NIFV_RHOCA : 228- 232: vnglg ErAgN aacee NIFV_RHOSH : 240- 244: vnglg ErAgN aalee NIVA_CLOPA : 224- 228: itgmg ErAgN cdflk S 19: 12.0102 30( 12) A-G-x(0,1)-A Occurences: 30(12) LEU1_CORGL : 298- 300: elgym AG-A drieg LEU1_ECOLI : 160- 162: eaain AG-A ttini LEU1_ECOLI : 219- 221: laavh AG-A rqveg LEU1_HAEIN : 161- 163: eaain AG-A ttvni LEU1_LACLA : 160- 162: qtavd AG-A tyini LEU1_LACLA : 219- 221: laaik AG-A grveg LEU1_LACLA : 235- 238: giger AGnA aleei LEU1_SALTY : 160- 162: eaain AG-A rtini LEU1_SALTY : 219- 221: laavh AG-A rqveg LEU1_YEAST : 293- 295: elgml AG-A drveg NIFV_AZOCH : 18- 21: dgeqs AGvA fnade NIFV_AZOVI : 18- 21: dgeqs AGvA fnade NIFV_AZOVI : 156- 158: evaqa AG-A rrlrf NIFV_AZOVI : 227- 230: glger AGnA aleec NIFV_KLEPN : 211- 213: laavs AG-A tsvnt NIFV_KLEPN : 227- 230: glger AGnA aawkp NIFV_RHOCA : 21- 24: dgeqt AGvA fslae NIFV_RHOCA : 40- 43: raldr AGvA eievg NIFV_RHOCA : 159- 161: evaaa AG-A irfri NIFV_RHOCA : 214- 216: imaah AG-A thlsv NIFV_RHOCA : 230- 233: glger AGnA aceev NIFV_RHOSH : 33- 36: dgeqt AGvA ftrae NIFV_RHOSH : 52- 55: ealqa AGvA evevg NIFV_RHOSH : 171- 173: hvaae AG-A irfri NIFV_RHOSH : 226- 228: laaar AG-A shlsv NIFV_RHOSH : 242- 245: glger AGnA aleev NIFV_RHOSH : 257- 260: aalea AGrA tgval NIFV_RHOSH : 338- 341: khssa AGlA ralae NIVA_CLOPA : 17- 20: dgeqk AGiA lsvqd NIVA_CLOPA : 210- 212: faafk AG-A kfadc T 20: 12.0102 38( 12) A-x(2)-A-x(0,1)-A Occurences: 38(12) LEU1_CORGL : 187- 191: qvkkl AtdA-A elikt LEU1_CORGL : 535- 540: gngpl AayAnA leklg LEU1_CORGL : 564- 568: tsgdd AeaA-A yvlae LEU1_ECOLI : 157- 162: rvvea AinAgA ttini LEU1_ECOLI : 216- 221: gnsla AvhAgA rqveg LEU1_HAEIN : 68- 72: rhikn ArvA-A lsrav LEU1_HAEIN : 158- 163: rivea AinAgA ttvni LEU1_LACLA : 68- 73: slndt AvtAlA rcvis LEU1_LACLA : 157- 162: eavqt AvdAgA tyini LEU1_LACLA : 216- 221: ansla AikAgA grveg LEU1_LACLA : 235- 239: giger AgnA-A leeia LEU1_SALTY : 157- 162: rvvea AinAgA rtini LEU1_SALTY : 216- 221: gnsla AvhAgA rqveg LEU1_YEAST : 10- 14: siial AehA-A srasr NIFV_AZOCH : 226- 230: glger AanA-A leecv NIFV_AZOCH : 374- 378: ceqgt AelA-A ggma NIFV_AZOVI : 153- 158: qvgev AqaAgA rrlrf NIFV_AZOVI : 227- 231: glger AgnA-A leecv NIFV_KLEPN : 33- 37: vaiae AlyA-A gitam NIFV_KLEPN : 153- 158: aiaev AqnApA arlry NIFV_KLEPN : 208- 213: antla AvsAgA tsvnt NIFV_KLEPN : 227- 231: glger AgnA-A awkps NIFV_KLEPN : 227- 232: glger AgnAaA wkpsa NIFV_RHOCA : 65- 70: iravv AeiAhA tpvvw NIFV_RHOCA : 153- 157: flirl AevA-A aagai NIFV_RHOCA : 153- 158: flirl AevAaA agair NIFV_RHOCA : 156- 161: rlaev AaaAgA irfri NIFV_RHOCA : 211- 216: antim AahAgA thlsv NIFV_RHOCA : 230- 234: glger AgnA-A ceevg NIFV_RHOCA : 261- 266: lpels AvvAkA sgraf NIFV_RHOSH : 48- 52: raiae AlqA-A gvaev NIFV_RHOSH : 165- 169: flaei AhvA-A eagai NIFV_RHOSH : 168- 173: eiahv AaeAgA irfri NIFV_RHOSH : 223- 228: ansla AarAgA shlsv NIFV_RHOSH : 242- 246: glger AgnA-A leeva NIFV_RHOSH : 253- 257: eevaa AleA-A gratg NIFV_RHOSH : 338- 343: khssa AglArA laeag NIFV_RHOSH : 354- 358: lpada AtlA-A lmpal NIFV_RHOSH : 381- 385: pedla AllA-A qteta NIVA_CLOPA : 207- 212: snsfa AfkAgA kfadc Number of patterns evaluated by Pratt:5077 Total running time: 5 seconds