------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 3 sequences from file AEROLYSIN PATTERN CONSERVATION: CM: min Nr of Seqs to Match 3 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename AEROLYSIN.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AERA_AERHY 493 AERA_AERSO 492 HLA_STAAU 319 Pratt run started at Thu Feb 6 18:33:54 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 40.2005 3( 3) K-x(3)-Y-x(0,2)-S-x(4,5)-K-N-x(2)-K-x(2)-L-V-x(2)-T-x(3)-I 2: 36.5305 3( 3) V-x(4)-G-x(5)-S-x(2)-P-x(1,3)-Y-x(3)-L-x(3)-T-x(5)-K-x(5)-L 3: 36.5305 3( 3) N-x(2)-D-T-x(2,4)-Y-x(2)-T-L-x-Y-x(4)-N-x(5)-T 4: 36.0305 3( 3) S-x(0,1)-D-T-x(2,4)-Y-x(2)-T-L-x-Y-x(4)-N-x(5)-T 5: 36.0305 3( 3) N-x(1,2)-D-T-x(2,4)-Y-x(2)-T-L-x-Y-x(4)-N-x(5)-T 6: 36.0305 3( 3) Y-x(0,2)-S-x(4,5)-K-N-x(2)-K-x(2)-L-V-x(2)-T-x(3)-I 7: 35.5305 3( 3) N-x(2)-D-T-x(2,4)-Y-x(2)-T-L-x-Y-x(2,4)-N-x(3)-T 8: 32.8604 3( 3) S-x(4,5)-K-N-x(2)-K-x(2)-L-V-x(2)-T-x(3)-I 9: 32.3604 4( 3) D-x(2,3)-L-x(2,3)-T-x(2)-N-W-x(2)-T-N-T 10: 32.3604 3( 3) G-x(5)-S-x(2)-P-x(1,3)-Y-x(3)-L-x(3)-T-x(5)-K-x(5)-L 11: 32.3604 3( 3) D-T-x(2,4)-Y-x(2)-T-L-x-Y-x(4)-N-x(5)-T 12: 32.3604 3( 3) A-x(1,2)-I-T-x-D-x(2)-A-x(0,1)-S-x(4)-N-I 13: 32.3604 3( 3) D-x(5)-Y-x(3)-L-x(3)-T-x(1,2)-N-x-S-x(0,1)-K-x(5)-L 14: 32.3604 3( 3) T-x(4)-S-x(0,1)-T-x-T-Y-G-x(4)-V-x(0,1)-T 15: 31.8604 3( 3) K-D-K-x(3,4)-R-x(3,5)-R-Y-x(5)-K-x(4)-N 16: 31.8604 3( 3) Y-x(1,3)-L-x(2,3)-T-x(2)-N-W-x(2)-T-N-T 17: 31.8604 3( 3) D-x(0,2)-L-x(2,3)-T-x(2)-N-W-x(2)-T-N-T 18: 31.8604 3( 3) G-x(5)-S-x(2)-P-x(1,3)-Y-x(3)-L-x(3)-T-x(1,2)-N-x-S 19: 31.8604 3( 3) G-x(5)-S-x(1,2)-P-x(1,3)-Y-x(3)-L-x(3)-T-x(5)-K-x(5)-L 20: 31.3604 3( 3) W-x(5)-D-x(1,3)-P-x(1,3)-Y-x(3)-L-x(3)-T-x(5)-K-x(5)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 110.9728 3( 3) K-x-[NV]-x-Y-x(0,2)-S-x(4,5)-K-N-[HK]-x-K-x-[LP]-L-V-[GI]-[ER]-T-[EK]-[GLV]-[ST]-I-[AE]-[GI]-[AQ]-x-[NR]-x(3)-[AE]-[ES]-[GQ]-[AN]-[GN]-x-[AS]-[GTV]-x-[AT]-x-[LP]-S B 2: 106.8905 3( 3) S-x(4,5)-K-N-[HK]-x-K-x-[LP]-L-V-[GI]-[ER]-T-[EK]-[GLV]-[ST]-I-[AE]-[GI]-[AQ]-x-[NR]-x(3)-[AE]-[ES]-[GQ]-[AN]-[GN]-x-[AS]-[GTV]-x-[AT]-x-[LP]-S-[AQ]-x(3)-[PQ] C 3: 106.8764 3( 3) Y-x(0,2)-S-x(4,5)-K-N-[HK]-x-K-x-[LP]-L-V-[GI]-[ER]-T-[EK]-[GLV]-[ST]-I-[AE]-[GI]-[AQ]-x-[NR]-x(3)-[AE]-[ES]-[GQ]-[AN]-[GN]-x-[AS]-[GTV]-x-[AT]-x-[LP]-S-[AQ] D 4: 96.6723 3( 3) N-x(2)-D-T-x(2,4)-Y-x-[SV]-T-L-x-Y-[DGT]-x(2)-[GST]-N-x-[ST]-x-[DT]-[DN]-T-x(2)-[IL]-[GS]-[EG]-x-[IV]-[GST]-[AT]-x-[NV]-x-[FI]-x-[HW]-[PT]-L-x(3)-[QT]-[EP] E 5: 96.1723 3( 3) S-x(0,1)-D-T-x(2,4)-Y-x-[SV]-T-L-x-Y-[DGT]-x(2)-[GST]-N-x-[ST]-x-[DT]-[DN]-T-x(2)-[IL]-[GS]-[EG]-x-[IV]-[GST]-[AT]-x-[NV]-x-[FI]-x-[HW]-[PT]-L-x(3)-[QT]-[EP] F 6: 96.1723 3( 3) N-x(1,2)-D-T-x(2,4)-Y-x-[SV]-T-L-x-Y-[DGT]-x(2)-[GST]-N-x-[ST]-x-[DT]-[DN]-T-x(2)-[IL]-[GS]-[EG]-x-[IV]-[GST]-[AT]-x-[NV]-x-[FI]-x-[HW]-[PT]-L-x(3)-[QT]-[EP] G 7: 92.7278 3( 3) T-x-[EST]-x(2)-S-x(0,1)-T-x-T-Y-G-[FL]-[NS]-[EG]-x-V-x(0,1)-T-x-[DN]-[DK]-x(3)-[IP]-[GL]-[GV]-[GL]-x-[GT]-[AE]-x-[SV]-x(2)-[GI]-x-[AT]-x(4)-[AQ]-[PS]-[DQ]-x(2)-[GT] H 8: 92.5022 3( 3) D-T-x(2,4)-Y-x-[SV]-T-L-x-Y-[DGT]-x(2)-[GST]-N-x-[ST]-x-[DT]-[DN]-T-x(2)-[IL]-[GS]-[EG]-x-[IV]-[GST]-[AT]-x-[NV]-x-[FI]-x-[HW]-[PT]-L-x(3)-[QT]-[EP] I 9: 92.4355 3( 3) G-x(2)-[DTV]-[NR]-x-S-x-[NT]-P-x(1,3)-Y-[DG]-[NV]-[QT]-L-x(3)-T-x(1,2)-N-x-S-x(2)-[AN]-[AT]-x-[GN]-[FL]-x-[DE]-x-[NV]-x-[AT]-x-[NS]-x-[FL]-x(2)-[GP]-[FL]-[SV]-[GP] J 10: 92.1143 3( 3) A-x(1,2)-I-T-x-D-x(2)-A-x(0,1)-S-x(2)-[AQ]-[GT]-N-I-[DE]-[IV]-[GI]-x-[EP]-x-[PV]-x-[ADG]-[ADS]-x-[QS]-x(4)-[AST]-x-[NS]-x-[DK]-G-[AT]-[GN]-[QT]-x(2)-[KR]-x-[DET] K 11: 82.8288 3( 3) V-x(4)-G-x(2)-[DTV]-[NR]-x-S-x-[NT]-P-x(1,3)-Y-[DG]-[NV]-[QT]-L-x(3)-T-x-[NST]-[GN]-x(2)-K-[AT]-[AN]-[DT]-x(2)-L-[DS]-[EP]-x(2)-[AST]-[ST] L 12: 77.6782 3( 3) W-[AG]-[PTV]-x(2)-[RS]-D-x(1,3)-P-x(1,3)-Y-[DG]-[NV]-[QT]-L-x(3)-T-x-[NST]-[GN]-x(2)-K-[AT]-[AN]-[DT]-x(2)-L-[DS]-[EP]-x(2)-[AST]-[ST] M 13: 77.1914 3( 3) N-x(2)-D-T-x(2,4)-Y-x-[SV]-T-L-x-Y-x(2,4)-N-x-[NS]-x-T-[GN]-[DT]-x-[GT]-[GL]-x(3)-[GV]-x(3)-[AN]-x-[FV]-x(2)-[GP]-x-[TV]-[GL]-[EK] N 14: 76.5260 3( 3) D-[ST]-x-[NQ]-[PS]-[GV]-Y-[DG]-[NV]-[QT]-L-x(3)-T-x(1,2)-N-x-S-x(0,1)-K-[AT]-[AN]-[DT]-x(2)-L-[DS]-[EP]-x(2)-[AST]-[ST] O 15: 75.4644 3( 3) G-x(2)-[DTV]-[NR]-x-S-x(2)-P-x(1,3)-Y-[DG]-[NV]-[QT]-L-x(3)-T-x-[NST]-[GN]-x(2)-K-[AT]-[AN]-[DT]-x(2)-L-[DS]-[EP]-x(2)-[AST]-[ST] P 16: 74.9644 3( 3) G-x(2)-[DTV]-[NR]-x-S-x(1,2)-P-x(1,3)-Y-[DG]-[NV]-[QT]-L-x(3)-T-x-[NST]-[GN]-x(2)-K-[AT]-[AN]-[DT]-x(2)-L-[DS]-[EP]-x(2)-[AST]-[ST] Q 17: 57.9037 4( 3) D-x(2,3)-L-x(2,3)-T-x-[ST]-N-W-x(2)-T-N-T-x-[DG]-x(2)-[ET]-[DK]-x-[ST]-[ST]-[EK]-[NR] R 18: 57.4037 3( 3) Y-x(1,3)-L-x(2,3)-T-x-[ST]-N-W-x(2)-T-N-T-x-[DG]-x(2)-[ET]-[DK]-x-[ST]-[ST]-[EK]-[NR] S 19: 57.4037 3( 3) D-x(0,2)-L-x(2,3)-T-x-[ST]-N-W-x(2)-T-N-T-x-[DG]-x(2)-[ET]-[DK]-x-[ST]-[ST]-[EK]-[NR] T 20: 50.5624 3( 3) D-[ST]-x-[NQ]-[PS]-[GV]-Y-[DG]-[NV]-[QT]-L-x(3)-T-x(1,2)-N-x-S-x(0,1)-K Best patterns with alignements: fitness hits(seqs) Pattern A 1: 110.9728 3( 3) K-x-[NV]-x-Y-x(0,2)-S-x(4,5)-K-N-[HK]-x-K-x-[LP]-L-V-[GI]-[ER]-T-[EK]-[GLV]-[ST]-I-[AE]-[GI]-[AQ]-x-[NR]-x(3)-[AE]-[ES]-[GQ]-[AN]-[GN]-x-[AS]-[GTV]-x-[AT]-x-[LP]-S Occurences: 3(3) AERA_AERHY : 252- 301: atnws KtNtYglSekvttKNKfKwPLVGETELSIEIAaNqswASQNGgSTtTsLS qsvrp AERA_AERSO : 252- 301: msnws KtNtYglSekvstKNKfKwPLVGETEVSIEIAaNqswASQNGgAVtTaLS qsvrp HLA_STAAU : 62- 108: engmh KkVfY--Sfidd-KNHnKkLLVIRTKGTIAGQyRvysEEGANkSGlAwPS afkvq B 2: 106.8905 3( 3) S-x(4,5)-K-N-[HK]-x-K-x-[LP]-L-V-[GI]-[ER]-T-[EK]-[GLV]-[ST]-I-[AE]-[GI]-[AQ]-x-[NR]-x(3)-[AE]-[ES]-[GQ]-[AN]-[GN]-x-[AS]-[GTV]-x-[AT]-x-[LP]-S-[AQ]-x(3)-[PQ] Occurences: 3(3) AERA_AERHY : 259- 306: ntygl SekvttKNKfKwPLVGETELSIEIAaNqswASQNGgSTtTsLSQsvrP tvpar AERA_AERSO : 259- 306: ntygl SekvstKNKfKwPLVGETEVSIEIAaNqswASQNGgAVtTaLSQsvrP vvpar HLA_STAAU : 67- 113: kkvfy Sfidd-KNHnKkLLVIRTKGTIAGQyRvysEEGANkSGlAwPSAfkvQ lqlpd C 3: 106.8764 3( 3) Y-x(0,2)-S-x(4,5)-K-N-[HK]-x-K-x-[LP]-L-V-[GI]-[ER]-T-[EK]-[GLV]-[ST]-I-[AE]-[GI]-[AQ]-x-[NR]-x(3)-[AE]-[ES]-[GQ]-[AN]-[GN]-x-[AS]-[GTV]-x-[AT]-x-[LP]-S-[AQ] Occurences: 3(3) AERA_AERHY : 256- 302: sktnt YglSekvttKNKfKwPLVGETELSIEIAaNqswASQNGgSTtTsLSQ svrpt AERA_AERSO : 256- 302: sktnt YglSekvstKNKfKwPLVGETEVSIEIAaNqswASQNGgAVtTaLSQ svrpv HLA_STAAU : 66- 109: hkkvf Y--Sfidd-KNHnKkLLVIRTKGTIAGQyRvysEEGANkSGlAwPSA fkvql D 4: 96.6723 3( 3) N-x(2)-D-T-x(2,4)-Y-x-[SV]-T-L-x-Y-[DGT]-x(2)-[GST]-N-x-[ST]-x-[DT]-[DN]-T-x(2)-[IL]-[GS]-[EG]-x-[IV]-[GST]-[AT]-x-[NV]-x-[FI]-x-[HW]-[PT]-L-x(3)-[QT]-[EP] Occurences: 3(3) AERA_AERHY : 229- 277: vgwav NdsDTpqsgYdVTLrYDtaTNwSkTNTygLSEkVTTkNkFkWPLvgeTE lsiei AERA_AERSO : 229- 277: vgwat NisDTpqsgYdVTLnYTtmSNwSkTNTygLSEkVSTkNkFkWPLvgeTE vsiei HLA_STAAU : 131- 177: dyypr NsiDTke--YmSTLtYGfnGNvTgDDTgkIGGlIGAnVsIgHTLkyvQP dfkti E 5: 96.1723 3( 3) S-x(0,1)-D-T-x(2,4)-Y-x-[SV]-T-L-x-Y-[DGT]-x(2)-[GST]-N-x-[ST]-x-[DT]-[DN]-T-x(2)-[IL]-[GS]-[EG]-x-[IV]-[GST]-[AT]-x-[NV]-x-[FI]-x-[HW]-[PT]-L-x(3)-[QT]-[EP] Occurences: 3(3) AERA_AERHY : 231- 277: wavnd S-DTpqsgYdVTLrYDtaTNwSkTNTygLSEkVTTkNkFkWPLvgeTE lsiei AERA_AERSO : 231- 277: watni S-DTpqsgYdVTLnYTtmSNwSkTNTygLSEkVSTkNkFkWPLvgeTE vsiei HLA_STAAU : 132- 177: yyprn SiDTke--YmSTLtYGfnGNvTgDDTgkIGGlIGAnVsIgHTLkyvQP dfkti F 6: 96.1723 3( 3) N-x(1,2)-D-T-x(2,4)-Y-x-[SV]-T-L-x-Y-[DGT]-x(2)-[GST]-N-x-[ST]-x-[DT]-[DN]-T-x(2)-[IL]-[GS]-[EG]-x-[IV]-[GST]-[AT]-x-[NV]-x-[FI]-x-[HW]-[PT]-L-x(3)-[QT]-[EP] Occurences: 3(3) AERA_AERHY : 229- 277: vgwav NdsDTpqsgYdVTLrYDtaTNwSkTNTygLSEkVTTkNkFkWPLvgeTE lsiei AERA_AERSO : 229- 277: vgwat NisDTpqsgYdVTLnYTtmSNwSkTNTygLSEkVSTkNkFkWPLvgeTE vsiei HLA_STAAU : 131- 177: dyypr NsiDTke--YmSTLtYGfnGNvTgDDTgkIGGlIGAnVsIgHTLkyvQP dfkti G 7: 92.7278 3( 3) T-x-[EST]-x(2)-S-x(0,1)-T-x-T-Y-G-[FL]-[NS]-[EG]-x-V-x(0,1)-T-x-[DN]-[DK]-x(3)-[IP]-[GL]-[GV]-[GL]-x-[GT]-[AE]-x-[SV]-x(2)-[GI]-x-[AT]-x(4)-[AQ]-[PS]-[DQ]-x(2)-[GT] Occurences: 3(3) AERA_AERHY : 246- 294: tlryd TaTnwSkTnTYGLSEkVtTkNKfkwPLVGeTElSieIaAnqswASQngG sttts AERA_AERSO : 246- 294: tlnyt TmSnwSkTnTYGLSEkVsTkNKfkwPLVGeTEvSieIaAnqswASQngG avtta HLA_STAAU : 135- 181: rnsid TkEymS-TlTYGFNGnV-TgDDtgkIGGLiGAnVsiGhTlkyvQPDfkT ilesp H 8: 92.5022 3( 3) D-T-x(2,4)-Y-x-[SV]-T-L-x-Y-[DGT]-x(2)-[GST]-N-x-[ST]-x-[DT]-[DN]-T-x(2)-[IL]-[GS]-[EG]-x-[IV]-[GST]-[AT]-x-[NV]-x-[FI]-x-[HW]-[PT]-L-x(3)-[QT]-[EP] Occurences: 3(3) AERA_AERHY : 232- 277: avnds DTpqsgYdVTLrYDtaTNwSkTNTygLSEkVTTkNkFkWPLvgeTE lsiei AERA_AERSO : 232- 277: atnis DTpqsgYdVTLnYTtmSNwSkTNTygLSEkVSTkNkFkWPLvgeTE vsiei HLA_STAAU : 134- 177: prnsi DTke--YmSTLtYGfnGNvTgDDTgkIGGlIGAnVsIgHTLkyvQP dfkti I 9: 92.4355 3( 3) G-x(2)-[DTV]-[NR]-x-S-x-[NT]-P-x(1,3)-Y-[DG]-[NV]-[QT]-L-x(3)-T-x(1,2)-N-x-S-x(2)-[AN]-[AT]-x-[GN]-[FL]-x-[DE]-x-[NV]-x-[AT]-x-[NS]-x-[FL]-x(2)-[GP]-[FL]-[SV]-[GP] Occurences: 3(3) AERA_AERHY : 225- 274: vktvv GwaVNdSdTPqsgYDVTLrydTatNwSktNTyGLsEkVtTkNkFkwPLVG etels AERA_AERSO : 225- 274: vhtvv GwaTNiSdTPqsgYDVTLnytTmsNwSktNTyGLsEkVsTkNkFkwPLVG etevs HLA_STAAU : 206- 252: vnqnw GpyDRdSwNPv--YGNQLfmkTr-NgSmkAAdNFlDpNkAsSlLssGFSP dfatv J 10: 92.1143 3( 3) A-x(1,2)-I-T-x-D-x(2)-A-x(0,1)-S-x(2)-[AQ]-[GT]-N-I-[DE]-[IV]-[GI]-x-[EP]-x-[PV]-x-[ADG]-[ADS]-x-[QS]-x(4)-[AST]-x-[NS]-x-[DK]-G-[AT]-[GN]-[QT]-x(2)-[KR]-x-[DET] Occurences: 3(3) AERA_AERHY : 421- 467: lrpvr Ag-ITgDfsAeSqfAGNIEIGaPvPlAAdSkvrrArSvDGAGQglRlE iplda AERA_AERSO : 421- 467: lrpvr As-ITgDfrAeSqfAGNIEIGtPvPlGSdSkvrrTrSvDGANTglKlD iplda HLA_STAAU : 255- 301: fspdf AtvITmDrkA-SkqQTNIDVIyErVrDDyQlhwtStNwKGTNTkdKwT drsse K 11: 82.8288 3( 3) V-x(4)-G-x(2)-[DTV]-[NR]-x-S-x-[NT]-P-x(1,3)-Y-[DG]-[NV]-[QT]-L-x(3)-T-x-[NST]-[GN]-x(2)-K-[AT]-[AN]-[DT]-x(2)-L-[DS]-[EP]-x(2)-[AST]-[ST] Occurences: 3(3) AERA_AERHY : 220- 264: sdrql VktvvGwaVNdSdTPqsgYDVTLrydTaTNwsKTNTygLSEkvTT knkfk AERA_AERSO : 220- 264: sertl VhtvvGwaTNiSdTPqsgYDVTLnytTmSNwsKTNTygLSEkvST knkfk HLA_STAAU : 201- 243: ifnnm VnqnwGpyDRdSwNPv--YGNQLfmkTrNGsmKAADnfLDPnkAS sllss L 12: 77.6782 3( 3) W-[AG]-[PTV]-x(2)-[RS]-D-x(1,3)-P-x(1,3)-Y-[DG]-[NV]-[QT]-L-x(3)-T-x-[NST]-[GN]-x(2)-K-[AT]-[AN]-[DT]-x(2)-L-[DS]-[EP]-x(2)-[AST]-[ST] Occurences: 3(3) AERA_AERHY : 226- 264: ktvvg WAVndSDt--PqsgYDVTLrydTaTNwsKTNTygLSEkvTT knkfk AERA_AERSO : 226- 264: htvvg WATniSDt--PqsgYDVTLnytTmSNwsKTNTygLSEkvST knkfk HLA_STAAU : 205- 243: mvnqn WGPydRDswnPv--YGNQLfmkTrNGsmKAADnfLDPnkAS sllss M 13: 77.1914 3( 3) N-x(2)-D-T-x(2,4)-Y-x-[SV]-T-L-x-Y-x(2,4)-N-x-[NS]-x-T-[GN]-[DT]-x-[GT]-[GL]-x(3)-[GV]-x(3)-[AN]-x-[FV]-x(2)-[GP]-x-[TV]-[GL]-[EK] Occurences: 3(3) AERA_AERHY : 229- 275: vgwav NdsDTpqsgYdVTLrYdtatNwSkTNTyGLsekVttkNkFkwPlVGE telsi AERA_AERSO : 229- 275: vgwat NisDTpqsgYdVTLnYttmsNwSkTNTyGLsekVstkNkFkwPlVGE tevsi HLA_STAAU : 131- 173: dyypr NsiDTke--YmSTLtYgf--NgNvTGDdTGkigGligAnVsiGhTLK yvqpd N 14: 76.5260 3( 3) D-[ST]-x-[NQ]-[PS]-[GV]-Y-[DG]-[NV]-[QT]-L-x(3)-T-x(1,2)-N-x-S-x(0,1)-K-[AT]-[AN]-[DT]-x(2)-L-[DS]-[EP]-x(2)-[AST]-[ST] Occurences: 3(3) AERA_AERHY : 232- 264: avnds DTpQSGYDVTLrydTatNwS-KTNTygLSEkvTT knkfk AERA_AERSO : 232- 264: atnis DTpQSGYDVTLnytTmsNwS-KTNTygLSEkvST knkfk HLA_STAAU : 211- 243: gpydr DSwNPVYGNQLfmkTr-NgSmKAADnfLDPnkAS sllss O 15: 75.4644 3( 3) G-x(2)-[DTV]-[NR]-x-S-x(2)-P-x(1,3)-Y-[DG]-[NV]-[QT]-L-x(3)-T-x-[NST]-[GN]-x(2)-K-[AT]-[AN]-[DT]-x(2)-L-[DS]-[EP]-x(2)-[AST]-[ST] Occurences: 3(3) AERA_AERHY : 225- 264: vktvv GwaVNdSdtPqsgYDVTLrydTaTNwsKTNTygLSEkvTT knkfk AERA_AERSO : 225- 264: vhtvv GwaTNiSdtPqsgYDVTLnytTmSNwsKTNTygLSEkvST knkfk HLA_STAAU : 206- 243: vnqnw GpyDRdSwnPv--YGNQLfmkTrNGsmKAADnfLDPnkAS sllss P 16: 74.9644 3( 3) G-x(2)-[DTV]-[NR]-x-S-x(1,2)-P-x(1,3)-Y-[DG]-[NV]-[QT]-L-x(3)-T-x-[NST]-[GN]-x(2)-K-[AT]-[AN]-[DT]-x(2)-L-[DS]-[EP]-x(2)-[AST]-[ST] Occurences: 3(3) AERA_AERHY : 225- 264: vktvv GwaVNdSdtPqsgYDVTLrydTaTNwsKTNTygLSEkvTT knkfk AERA_AERSO : 225- 264: vhtvv GwaTNiSdtPqsgYDVTLnytTmSNwsKTNTygLSEkvST knkfk HLA_STAAU : 206- 243: vnqnw GpyDRdSwnPv--YGNQLfmkTrNGsmKAADnfLDPnkAS sllss Q 17: 57.9037 4( 3) D-x(2,3)-L-x(2,3)-T-x-[ST]-N-W-x(2)-T-N-T-x-[DG]-x(2)-[ET]-[DK]-x-[ST]-[ST]-[EK]-[NR] Occurences: 4(3) AERA_AERHY : 239- 266: pqsgy Dvt-LrydTaTNWskTNTyGlsEKvTTKN kfkwp AERA_AERSO : 239- 266: pqsgy Dvt-LnytTmSNWskTNTyGlsEKvSTKN kfkwp HLA_STAAU : 280- 307: yervr DdyqLhw-TsTNWkgTNTkDkwTDrSSER ykidw HLA_STAAU : 281- 307: ervrd Dyq-Lhw-TsTNWkgTNTkDkwTDrSSER ykidw R 18: 57.4037 3( 3) Y-x(1,3)-L-x(2,3)-T-x-[ST]-N-W-x(2)-T-N-T-x-[DG]-x(2)-[ET]-[DK]-x-[ST]-[ST]-[EK]-[NR] Occurences: 3(3) AERA_AERHY : 238- 266: tpqsg YdvtLrydTaTNWskTNTyGlsEKvTTKN kfkwp AERA_AERSO : 238- 266: tpqsg YdvtLnytTmSNWskTNTyGlsEKvSTKN kfkwp HLA_STAAU : 282- 307: rvrdd Yq--Lhw-TsTNWkgTNTkDkwTDrSSER ykidw S 19: 57.4037 3( 3) D-x(0,2)-L-x(2,3)-T-x-[ST]-N-W-x(2)-T-N-T-x-[DG]-x(2)-[ET]-[DK]-x-[ST]-[ST]-[EK]-[NR] Occurences: 3(3) AERA_AERHY : 239- 266: pqsgy DvtLrydTaTNWskTNTyGlsEKvTTKN kfkwp AERA_AERSO : 239- 266: pqsgy DvtLnytTmSNWskTNTyGlsEKvSTKN kfkwp HLA_STAAU : 281- 307: ervrd DyqLhw-TsTNWkgTNTkDkwTDrSSER ykidw T 20: 50.5624 3( 3) D-[ST]-x-[NQ]-[PS]-[GV]-Y-[DG]-[NV]-[QT]-L-x(3)-T-x(1,2)-N-x-S-x(0,1)-K Occurences: 3(3) AERA_AERHY : 232- 252: avnds DTpQSGYDVTLrydTatNwS-K tntyg AERA_AERSO : 232- 252: atnis DTpQSGYDVTLnytTmsNwS-K tntyg HLA_STAAU : 211- 231: gpydr DSwNPVYGNQLfmkTr-NgSmK aadnf Number of patterns evaluated by Pratt:23632 Total running time: 6 seconds