------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 16 sequences from file ADX PATTERN CONSERVATION: CM: min Nr of Seqs to Match 16 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ADX.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ADX1_BOVIN 186 ADX2_BOVIN 186 ADXH_DROME 95 ADX_CHICK 143 ADX_HUMAN 184 ADX_MOUSE 188 ADX_PIG 117 ADX_RAT 188 ADX_SHEEP 122 FER6_RHOCA 106 FER_CAUCR 106 FER_ECOLI 110 FER_HAEIN 112 PUTX_PSEPU 106 TERP_PSESP 105 THCC_RHOSO 106 Pratt run started at Thu Feb 6 18:33:54 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 16( 16) R-L-x-C-Q 2: 15.6802 16( 16) C-x(5)-C-x(0,1)-T-x(0,1)-C 3: 12.5102 16( 16) L-x-C-Q 4: 12.5102 16( 16) C-x-T-C 5: 11.5102 16( 16) C-x(0,1)-T-x(0,1)-C 6: 11.5102 20( 16) A-x(0,1)-C-x(2,3)-C 7: 11.0102 38( 16) E-x(1,3)-D-x(2,3)-D 8: 8.3401 16( 16) C-Q 9: 8.3401 18( 16) D-x(2)-D 10: 8.3401 28( 16) E-x(3)-D 11: 8.3401 21( 16) E-A 12: 8.3401 18( 16) T-C 13: 8.3401 29( 16) L-x-C 14: 7.8401 53( 16) A-x(1,2)-G 15: 7.8401 25( 16) E-x(0,1)-E 16: 7.8401 22( 16) G-x(3,4)-E 17: 7.8401 20( 16) E-x(1,2)-M 18: 7.8401 36( 16) E-x(3,4)-L 19: 7.8401 38( 16) D-x(3,4)-G 20: 7.8401 35( 16) L-x(4,5)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 30.4300 16( 16) C-[DEG]-x-[AQST]-x(2)-C-x(0,1)-T-x(0,1)-C-[HR]-x(2)-[FIV]-[DENQR]-x(4)-[DEQS] B 2: 24.9852 16( 16) C-[AST]-T-C-[HR]-x(2)-[FIV]-[DENQR]-x(4)-[DEQS] C 3: 21.3809 16( 16) C-x(0,1)-T-x(0,1)-C-[HR]-x(2)-[FIV]-[DENQR]-x(4)-[DEQS] D 4: 21.3225 16( 16) R-L-[CGST]-C-Q-x(2)-[ILMV] E 5: 17.1525 16( 16) L-[CGST]-C-Q-x(2)-[ILMV] F 6: 16.3312 16( 16) L-[ACDGSTV]-C-Q-x(2)-[ILMV] G 7: 15.0339 16( 16) T-C-x(3)-[FIV]-[DENQR]-x(4)-[DEQS] H 8: 12.2454 18( 16) G-x(3,4)-E-[AGLV]-x(4)-[GNST] I 9: 11.5102 20( 16) A-x(0,1)-C-x(2,3)-C J 10: 11.0102 38( 16) E-x(1,3)-D-x(2,3)-D K 11: 10.9375 16( 16) D-x(2)-D-x-[ALV] L 12: 10.7348 16( 16) C-Q-x(2)-[ILMV] M 13: 9.2631 34( 16) E-x(3,4)-L-[DEGNQST] N 14: 9.2597 33( 16) A-x(1,2)-G-x-[ADGNPST] O 15: 8.3401 28( 16) E-x(3)-D P 16: 8.3401 21( 16) E-A Q 17: 7.8401 25( 16) E-x(0,1)-E R 18: 7.8401 20( 16) E-x(1,2)-M S 19: 7.8401 38( 16) D-x(3,4)-G T 20: 7.8401 35( 16) L-x(4,5)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 30.4300 16( 16) C-[DEG]-x-[AQST]-x(2)-C-x(0,1)-T-x(0,1)-C-[HR]-x(2)-[FIV]-[DENQR]-x(4)-[DEQS] Occurences: 16(16) ADX1_BOVIN : 104- 123: dgfga CEgTlaCsT-CHliFEqhifE kleai ADX2_BOVIN : 104- 123: dgfga CEgTlaCsT-CHliFEqhifE kleai ADXH_DROME : 5- 24: mega CEaSlaCtT-CHvyVQhdylQ klkea ADXH_DROME : 5- 24: mega CEaSlaC-TtCHvyVQhdylQ klkea ADX_CHICK : 65- 84: dgfga CEgTlaCsT-CHliFEdhifE kldai ADX_HUMAN : 106- 125: dgfga CEgTlaCsT-CHliFEdhiyE kldai ADX_MOUSE : 110- 129: dgfga CEgTlaCsT-CHliFEdhiyE kldai ADX_PIG : 46- 65: dgfga CEgTlaCsT-CHliFEdhifE kleai ADX_RAT : 110- 129: dgfga CEgTlaCsT-CHliFEdhiyE kldai ADX_SHEEP : 40- 59: dgfga CEgTlaCsT-CHliFEqhiyE kleai FER6_RHOCA : 39- 58: gidad CGgAcaCsT-CHayVDpawvD klpka FER_CAUCR : 40- 59: gidad CGgAcaCaT-CHvyVDeawlD ktgdk FER_ECOLI : 41- 60: eieha CEkScaCtT-CHciVRegfdS lpess FER_ECOLI : 41- 60: eieha CEkScaC-TtCHciVRegfdS lpess FER_HAEIN : 41- 60: eihha CDgScaCtT-CHviVRegfdS lnets FER_HAEIN : 41- 60: eihha CDgScaC-TtCHviVRegfdS lnets PUTX_PSEPU : 39- 58: divgd CGgSasCaT-CHvyVNeaftD kvpaa TERP_PSESP : 39- 58: givae CGgScvCaT-CRieIEdawvE ivgea THCC_RHOSO : 39- 58: givae CGgQamCaT-CHvyVEspwaD kfpsi B 2: 24.9852 16( 16) C-[AST]-T-C-[HR]-x(2)-[FIV]-[DENQR]-x(4)-[DEQS] Occurences: 16(16) ADX1_BOVIN : 110- 123: egtla CSTCHliFEqhifE kleai ADX2_BOVIN : 110- 123: egtla CSTCHliFEqhifE kleai ADXH_DROME : 11- 24: easla CTTCHvyVQhdylQ klkea ADX_CHICK : 71- 84: egtla CSTCHliFEdhifE kldai ADX_HUMAN : 112- 125: egtla CSTCHliFEdhiyE kldai ADX_MOUSE : 116- 129: egtla CSTCHliFEdhiyE kldai ADX_PIG : 52- 65: egtla CSTCHliFEdhifE kleai ADX_RAT : 116- 129: egtla CSTCHliFEdhiyE kldai ADX_SHEEP : 46- 59: egtla CSTCHliFEqhiyE kleai FER6_RHOCA : 45- 58: ggaca CSTCHayVDpawvD klpka FER_CAUCR : 46- 59: ggaca CATCHvyVDeawlD ktgdk FER_ECOLI : 47- 60: eksca CTTCHciVRegfdS lpess FER_HAEIN : 47- 60: dgsca CTTCHviVRegfdS lnets PUTX_PSEPU : 45- 58: ggsas CATCHvyVNeaftD kvpaa TERP_PSESP : 45- 58: ggscv CATCRieIEdawvE ivgea THCC_RHOSO : 45- 58: ggqam CATCHvyVEspwaD kfpsi C 3: 21.3809 16( 16) C-x(0,1)-T-x(0,1)-C-[HR]-x(2)-[FIV]-[DENQR]-x(4)-[DEQS] Occurences: 16(16) ADX1_BOVIN : 110- 123: egtla CsT-CHliFEqhifE kleai ADX2_BOVIN : 110- 123: egtla CsT-CHliFEqhifE kleai ADXH_DROME : 11- 24: easla CtT-CHvyVQhdylQ klkea ADXH_DROME : 11- 24: easla C-TtCHvyVQhdylQ klkea ADX_CHICK : 71- 84: egtla CsT-CHliFEdhifE kldai ADX_HUMAN : 112- 125: egtla CsT-CHliFEdhiyE kldai ADX_MOUSE : 116- 129: egtla CsT-CHliFEdhiyE kldai ADX_PIG : 52- 65: egtla CsT-CHliFEdhifE kleai ADX_RAT : 116- 129: egtla CsT-CHliFEdhiyE kldai ADX_SHEEP : 46- 59: egtla CsT-CHliFEqhiyE kleai FER6_RHOCA : 45- 58: ggaca CsT-CHayVDpawvD klpka FER_CAUCR : 46- 59: ggaca CaT-CHvyVDeawlD ktgdk FER_ECOLI : 47- 60: eksca CtT-CHciVRegfdS lpess FER_ECOLI : 47- 60: eksca C-TtCHciVRegfdS lpess FER_HAEIN : 47- 60: dgsca CtT-CHviVRegfdS lnets FER_HAEIN : 47- 60: dgsca C-TtCHviVRegfdS lnets PUTX_PSEPU : 45- 58: ggsas CaT-CHvyVNeaftD kvpaa TERP_PSESP : 45- 58: ggscv CaT-CRieIEdawvE ivgea THCC_RHOSO : 45- 58: ggqam CaT-CHvyVEspwaD kfpsi D 4: 21.3225 16( 16) R-L-[CGST]-C-Q-x(2)-[ILMV] Occurences: 16(16) ADX1_BOVIN : 147- 154: ltdrs RLGCQicL tkamd ADX2_BOVIN : 147- 154: ltdrs RLGCQicL tkamd ADXH_DROME : 48- 55: lrens RLGCQilL dksme ADX_CHICK : 108- 115: ltets RLGCQicL kksmd ADX_HUMAN : 149- 156: ltdrs RLGCQicL tksmd ADX_MOUSE : 153- 160: ltdrs RLGCQvcL tkamd ADX_PIG : 89- 96: ltdrs RLGCQicL tkamd ADX_RAT : 153- 160: ltnrs RLGCQvcL tkamd ADX_SHEEP : 83- 90: ltdrs RLGCQicL tkamd FER6_RHOCA : 83- 90: npats RLTCQikV tslld FER_CAUCR : 83- 90: vepns RLSCQikV sdald FER_ECOLI : 83- 90: lepes RLSCQarV tdedl FER_HAEIN : 83- 90: lemds RLSCQcvV gnedl PUTX_PSEPU : 83- 90: lkpns RLCCQiiM tpeld TERP_PSESP : 83- 90: mtagt RLSCQvfI dpsmd THCC_RHOSO : 83- 90: rteas RLSCQlvV sddvd E 5: 17.1525 16( 16) L-[CGST]-C-Q-x(2)-[ILMV] Occurences: 16(16) ADX1_BOVIN : 148- 154: tdrsr LGCQicL tkamd ADX2_BOVIN : 148- 154: tdrsr LGCQicL tkamd ADXH_DROME : 49- 55: rensr LGCQilL dksme ADX_CHICK : 109- 115: tetsr LGCQicL kksmd ADX_HUMAN : 150- 156: tdrsr LGCQicL tksmd ADX_MOUSE : 154- 160: tdrsr LGCQvcL tkamd ADX_PIG : 90- 96: tdrsr LGCQicL tkamd ADX_RAT : 154- 160: tnrsr LGCQvcL tkamd ADX_SHEEP : 84- 90: tdrsr LGCQicL tkamd FER6_RHOCA : 84- 90: patsr LTCQikV tslld FER_CAUCR : 84- 90: epnsr LSCQikV sdald FER_ECOLI : 84- 90: epesr LSCQarV tdedl FER_HAEIN : 84- 90: emdsr LSCQcvV gnedl PUTX_PSEPU : 84- 90: kpnsr LCCQiiM tpeld TERP_PSESP : 84- 90: tagtr LSCQvfI dpsmd THCC_RHOSO : 84- 90: teasr LSCQlvV sddvd F 6: 16.3312 16( 16) L-[ACDGSTV]-C-Q-x(2)-[ILMV] Occurences: 16(16) ADX1_BOVIN : 148- 154: tdrsr LGCQicL tkamd ADX2_BOVIN : 148- 154: tdrsr LGCQicL tkamd ADXH_DROME : 49- 55: rensr LGCQilL dksme ADX_CHICK : 109- 115: tetsr LGCQicL kksmd ADX_HUMAN : 150- 156: tdrsr LGCQicL tksmd ADX_MOUSE : 154- 160: tdrsr LGCQvcL tkamd ADX_PIG : 90- 96: tdrsr LGCQicL tkamd ADX_RAT : 154- 160: tnrsr LGCQvcL tkamd ADX_SHEEP : 84- 90: tdrsr LGCQicL tkamd FER6_RHOCA : 84- 90: patsr LTCQikV tslld FER_CAUCR : 84- 90: epnsr LSCQikV sdald FER_ECOLI : 84- 90: epesr LSCQarV tdedl FER_HAEIN : 84- 90: emdsr LSCQcvV gnedl PUTX_PSEPU : 84- 90: kpnsr LCCQiiM tpeld TERP_PSESP : 84- 90: tagtr LSCQvfI dpsmd THCC_RHOSO : 84- 90: teasr LSCQlvV sddvd G 7: 15.0339 16( 16) T-C-x(3)-[FIV]-[DENQR]-x(4)-[DEQS] Occurences: 16(16) ADX1_BOVIN : 112- 123: tlacs TChliFEqhifE kleai ADX2_BOVIN : 112- 123: tlacs TChliFEqhifE kleai ADXH_DROME : 13- 24: slact TChvyVQhdylQ klkea ADX_CHICK : 73- 84: tlacs TChliFEdhifE kldai ADX_HUMAN : 114- 125: tlacs TChliFEdhiyE kldai ADX_MOUSE : 118- 129: tlacs TChliFEdhiyE kldai ADX_PIG : 54- 65: tlacs TChliFEdhifE kleai ADX_RAT : 118- 129: tlacs TChliFEdhiyE kldai ADX_SHEEP : 48- 59: tlacs TChliFEqhiyE kleai FER6_RHOCA : 47- 58: acacs TChayVDpawvD klpka FER_CAUCR : 48- 59: acaca TChvyVDeawlD ktgdk FER_ECOLI : 49- 60: scact TChciVRegfdS lpess FER_HAEIN : 49- 60: scact TChviVRegfdS lnets PUTX_PSEPU : 47- 58: sasca TChvyVNeaftD kvpaa TERP_PSESP : 47- 58: scvca TCrieIEdawvE ivgea THCC_RHOSO : 47- 58: qamca TChvyVEspwaD kfpsi H 8: 12.2454 18( 16) G-x(3,4)-E-[AGLV]-x(4)-[GNST] Occurences: 18(16) ADX1_BOVIN : 100- 111: nldid GfgacEGtlacS tchli ADX2_BOVIN : 100- 111: nldid GfgacEGtlacS tchli ADXH_DROME : 61- 71: dksme Gmel-ELpkapG tstsm ADX_CHICK : 61- 72: nldid GfgacEGtlacS tchli ADX_HUMAN : 44- 54: rnrgp Ggsa-EAsrslS vsara ADX_HUMAN : 102- 113: nldid GfgacEGtlacS tchli ADX_MOUSE : 106- 117: nldid GfgacEGtlacS tchli ADX_PIG : 42- 53: nldid GfgacEGtlacS tchli ADX_RAT : 106- 117: nldid GfgacEGtlacS tchli ADX_SHEEP : 36- 47: nldid GfgacEGtlacS tchli FER6_RHOCA : 10- 20: fiehn Gtrh-EVeakpG ltvme FER6_RHOCA : 20- 31: veakp GltvmEAardnG vpgid FER_CAUCR : 21- 32: idvkp GltvmEGavknN vpgid FER_ECOLI : 15- 25: dlcpd Gavl-EAnsgeT ildaa FER_HAEIN : 23- 34: vdaat GdnllEVahnaG veihh PUTX_PSEPU : 10- 20: yvshd Gtrr-ELdvadG vslmq TERP_PSESP : 20- 31: vdaqd GqslmEVatqnG vpgiv THCC_RHOSO : 10- 20: yvhpd Gtkh-EVevptG krvmq I 9: 11.5102 20( 16) A-x(0,1)-C-x(2,3)-C Occurences: 20(16) ADX1_BOVIN : 109- 113: cegtl A-Cst-C hlife ADX2_BOVIN : 109- 113: cegtl A-Cst-C hlife ADXH_DROME : 10- 14: ceasl A-Ctt-C hvyvq ADX_CHICK : 70- 74: cegtl A-Cst-C hlife ADX_HUMAN : 111- 115: cegtl A-Cst-C hlife ADX_MOUSE : 115- 119: cegtl A-Cst-C hlife ADX_PIG : 51- 55: cegtl A-Cst-C hlife ADX_RAT : 115- 119: cegtl A-Cst-C hlife ADX_SHEEP : 45- 49: cegtl A-Cst-C hlife FER6_RHOCA : 37- 43: vpgid AdCggaC acstc FER6_RHOCA : 44- 48: cggac A-Cst-C hayvd FER_CAUCR : 38- 44: vpgid AdCggaC acatc FER_CAUCR : 45- 49: cggac A-Cat-C hvyvd FER_ECOLI : 40- 45: ieieh A-CeksC acttc FER_ECOLI : 46- 50: ceksc A-Ctt-C hcivr FER_HAEIN : 40- 45: veihh A-CdgsC acttc FER_HAEIN : 46- 50: cdgsc A-Ctt-C hvivr PUTX_PSEPU : 43- 48: dcggs AsCat-C hvyvn TERP_PSESP : 37- 43: vpgiv AeCggsC vcatc THCC_RHOSO : 43- 48: ecggq AmCat-C hvyve J 10: 11.0102 38( 16) E-x(1,3)-D-x(2,3)-D Occurences: 38(16) ADX1_BOVIN : 126- 134: ifekl EaitDeenD mldla ADX1_BOVIN : 131- 137: eaitd Een-Dml-D laygl ADX1_BOVIN : 132- 137: aitde En--Dml-D laygl ADX2_BOVIN : 126- 134: ifekl EaitDeenD mldla ADX2_BOVIN : 131- 137: eaitd Een-Dml-D laygl ADX2_BOVIN : 132- 137: aitde En--Dml-D laygl ADXH_DROME : 30- 38: klkea EeqeDdllD mapfl ADXH_DROME : 31- 38: lkeae EqedDll-D mapfl ADXH_DROME : 31- 38: lkeae Eqe-DdllD mapfl ADXH_DROME : 33- 38: eaeeq Ed--Dll-D mapfl ADX_CHICK : 84- 91: edhif Ekl-DaitD eemdm ADX_CHICK : 92- 98: daitd Eem-Dml-D laygl ADX_CHICK : 93- 98: aitde Em--Dml-D laygl ADX_HUMAN : 125- 132: edhiy Ekl-DaitD eendm ADX_HUMAN : 133- 139: daitd Een-Dml-D laygl ADX_HUMAN : 134- 139: aitde En--Dml-D laygl ADX_MOUSE : 129- 136: edhiy Ekl-DaitD eendm ADX_MOUSE : 137- 143: daitd Een-Dml-D lafgl ADX_MOUSE : 138- 143: aitde En--Dml-D lafgl ADX_PIG : 68- 76: ifekl EaitDeenD mldla ADX_PIG : 73- 79: eaitd Een-Dml-D laygl ADX_PIG : 74- 79: aitde En--Dml-D laygl ADX_RAT : 129- 136: edhiy Ekl-DaitD eendm ADX_RAT : 137- 143: daitd Een-Dml-D lafgl ADX_RAT : 138- 143: aitde En--Dml-D lafgl ADX_SHEEP : 62- 70: iyekl EaitDeenD mldla ADX_SHEEP : 67- 73: eaitd Een-Dml-D laygl ADX_SHEEP : 68- 73: aitde En--Dml-D laygl FER6_RHOCA : 67- 72: kalpt Et--Dmi-D fayep FER_CAUCR : 55- 63: hvyvd EawlDktgD ksame FER_ECOLI : 66- 73: lpess EqedDml-D kawgl FER_ECOLI : 66- 73: lpess Eqe-DdmlD kawgl FER_ECOLI : 68- 73: esseq Ed--Dml-D kawgl FER_HAEIN : 63- 70: fdsln Ets-DqeeD mldka FER_HAEIN : 68- 73: etsdq Ee--Dml-D kawgl PUTX_PSEPU : 14- 19: dgtrr El--Dva-D gvslm TERP_PSESP : 12- 19: deqsg EyavDaq-D gqslm TERP_PSESP : 62- 69: veivg EanpDen-D llqst THCC_RHOSO : 65- 72: fpsis Eee-DemlD dtvsp THCC_RHOSO : 66- 72: psise Ee--DemlD dtvsp K 11: 10.9375 16( 16) D-x(2)-D-x-[ALV] Occurences: 16(16) ADX1_BOVIN : 134- 139: tdeen DmlDlA ygltd ADX2_BOVIN : 134- 139: tdeen DmlDlA ygltd ADXH_DROME : 35- 40: eeqed DllDmA pflre ADX_CHICK : 95- 100: tdeem DmlDlA yglte ADX_HUMAN : 136- 141: tdeen DmlDlA ygltd ADX_MOUSE : 140- 145: tdeen DmlDlA fgltd ADX_PIG : 76- 81: tdeen DmlDlA ygltd ADX_RAT : 140- 145: tdeen DmlDlA fgltn ADX_SHEEP : 70- 75: tdeen DmlDlA ygltd FER6_RHOCA : 69- 74: lptet DmiDfA yepnp FER_CAUCR : 92- 97: qikvs DalDgL vvrlp FER_ECOLI : 70- 75: seqed DmlDkA wglep FER_HAEIN : 70- 75: sdqee DmlDkA wglem PUTX_PSEPU : 16- 21: trrel DvaDgV slmqa TERP_PSESP : 66- 71: geanp DenDlL qstge THCC_RHOSO : 92- 97: qlvvs DdvDgL ivrlp L 12: 10.7348 16( 16) C-Q-x(2)-[ILMV] Occurences: 16(16) ADX1_BOVIN : 150- 154: rsrlg CQicL tkamd ADX2_BOVIN : 150- 154: rsrlg CQicL tkamd ADXH_DROME : 51- 55: nsrlg CQilL dksme ADX_CHICK : 111- 115: tsrlg CQicL kksmd ADX_HUMAN : 152- 156: rsrlg CQicL tksmd ADX_MOUSE : 156- 160: rsrlg CQvcL tkamd ADX_PIG : 92- 96: rsrlg CQicL tkamd ADX_RAT : 156- 160: rsrlg CQvcL tkamd ADX_SHEEP : 86- 90: rsrlg CQicL tkamd FER6_RHOCA : 86- 90: tsrlt CQikV tslld FER_CAUCR : 86- 90: nsrls CQikV sdald FER_ECOLI : 86- 90: esrls CQarV tdedl FER_HAEIN : 86- 90: dsrls CQcvV gnedl PUTX_PSEPU : 86- 90: nsrlc CQiiM tpeld TERP_PSESP : 86- 90: gtrls CQvfI dpsmd THCC_RHOSO : 86- 90: asrls CQlvV sddvd M 13: 9.2631 34( 16) E-x(3,4)-L-[DEGNQST] Occurences: 34(16) ADX1_BOVIN : 131- 137: eaitd EendmLD laygl ADX1_BOVIN : 132- 137: aitde Endm-LD laygl ADX2_BOVIN : 131- 137: eaitd EendmLD laygl ADX2_BOVIN : 132- 137: aitde Endm-LD laygl ADXH_DROME : 33- 38: eaeeq Eddl-LD mapfl ADXH_DROME : 45- 50: apflr Ensr-LG cqill ADXH_DROME : 60- 65: ldksm Egme-LE lpkap ADX_CHICK : 92- 98: daitd EemdmLD laygl ADX_CHICK : 93- 98: aitde Emdm-LD laygl ADX_CHICK : 105- 110: ayglt Etsr-LG cqicl ADX_HUMAN : 48- 54: pggsa EasrsLS vsara ADX_HUMAN : 133- 139: daitd EendmLD laygl ADX_HUMAN : 134- 139: aitde Endm-LD laygl ADX_MOUSE : 137- 143: daitd EendmLD lafgl ADX_MOUSE : 138- 143: aitde Endm-LD lafgl ADX_PIG : 73- 79: eaitd EendmLD laygl ADX_PIG : 74- 79: aitde Endm-LD laygl ADX_RAT : 137- 143: daitd EendmLD lafgl ADX_RAT : 138- 143: aitde Endm-LD lafgl ADX_SHEEP : 67- 73: eaitd EendmLD laygl ADX_SHEEP : 68- 73: aitde Endm-LD laygl FER6_RHOCA : 16- 22: trhev EakpgLT vmeaa FER_CAUCR : 68- 73: dksam Eesm-LD faenv FER_CAUCR : 79- 85: faenv EpnsrLS cqikv FER_ECOLI : 68- 73: esseq Eddm-LD kawgl FER_ECOLI : 79- 85: kawgl EpesrLS cqarv FER_HAEIN : 56- 62: hvivr EgfdsLN etsdq FER_HAEIN : 68- 73: etsdq Eedm-LD kawgl FER_HAEIN : 79- 85: kawgl EmdsrLS cqcvv PUTX_PSEPU : 67- 72: aaner Eigm-LE cvtae TERP_PSESP : 67- 72: eanpd Endl-LQ stgep THCC_RHOSO : 66- 72: psise EedemLD dtvsp THCC_RHOSO : 67- 72: sisee Edem-LD dtvsp THCC_RHOSO : 80- 85: vsprt Easr-LS cqlvv N 14: 9.2597 33( 16) A-x(1,2)-G-x-[ADGNPST] Occurences: 33(16) ADX1_BOVIN : 11- 16: lrvas AalGdT agrwr ADX1_BOVIN : 12- 16: rvasa Al-GdT agrwr ADX1_BOVIN : 139- 143: dmldl Ay-GlT drsrl ADX2_BOVIN : 11- 16: lrvas AalGdT agrwr ADX2_BOVIN : 12- 16: rvasa Al-GdT agrwr ADX2_BOVIN : 139- 143: dmldl Ay-GlT drsrl ADXH_DROME : 69- 73: lelpk Ap-GtS tsmgt ADX_CHICK : 40- 44: gdklt Ak-GkP gdsll ADX_CHICK : 100- 104: dmldl Ay-GlT etsrl ADX_HUMAN : 2- 7: m AaaGgA rllra ADX_HUMAN : 3- 7: ma Aa-GgA rllra ADX_HUMAN : 15- 20: lraas AvlGgP agrwl ADX_HUMAN : 141- 145: dmldl Ay-GlT drsrl ADX_MOUSE : 49- 54: sprlh AeaGpG rplsv ADX_MOUSE : 51- 56: rlhae AgpGrP lsvsa ADX_MOUSE : 145- 149: dmldl Af-GlT drsrl ADX_PIG : 81- 85: dmldl Ay-GlT drsrl ADX_RAT : 18- 23: acasv AfrGlD crrll ADX_RAT : 49- 54: sphtl AeaGpG rplsv ADX_RAT : 51- 56: htlae AgpGrP lsvsa ADX_RAT : 145- 149: dmldl Af-GlT nrsrl ADX_SHEEP : 75- 79: dmldl Ay-GlT drsrl FER6_RHOCA : 17- 22: rheve AkpGlT vmeaa FER6_RHOCA : 37- 42: vpgid AdcGgA cacst FER_CAUCR : 38- 43: vpgid AdcGgA cacat FER_ECOLI : 20- 25: gavle AnsGeT ildaa FER_HAEIN : 20- 25: gmvvd AatGdN lleva FER_HAEIN : 21- 25: mvvda At-GdN lleva PUTX_PSEPU : 18- 22: reldv Ad-GvS lmqaa TERP_PSESP : 17- 22: eyavd AqdGqS lmeva TERP_PSESP : 37- 42: vpgiv AecGgS cvcat THCC_RHOSO : 26- 31: krvmq AaiGaG idgiv THCC_RHOSO : 27- 31: rvmqa Ai-GaG idgiv O 15: 8.3401 28( 16) E-x(3)-D Occurences: 28(16) ADX1_BOVIN : 126- 130: ifekl EaitD eendm ADX2_BOVIN : 126- 130: ifekl EaitD eendm ADXH_DROME : 30- 34: klkea EeqeD dlldm ADXH_DROME : 31- 35: lkeae EqedD lldma ADX_CHICK : 54- 58: ldvvv EnnlD idgfg ADX_CHICK : 128- 132: tvrvp EavaD arqsv ADX_HUMAN : 95- 99: ldvvv EnnlD idgfg ADX_HUMAN : 169- 173: tvrvp EtvaD arqsi ADX_MOUSE : 99- 103: ldvvi EnnlD idgfg ADX_MOUSE : 173- 177: tvrvp EavaD vrqsv ADX_PIG : 35- 39: ldvvi EnnlD idgfg ADX_PIG : 68- 72: ifekl EaitD eendm ADX_PIG : 109- 113: tvrvp EavaD ares ADX_RAT : 99- 103: ldvvi EnnlD idgfg ADX_RAT : 173- 177: tvrvp EavaD vrqsv ADX_SHEEP : 29- 33: ldvvv EnnlD idgfg ADX_SHEEP : 62- 66: iyekl EaitD eendm FER6_RHOCA : 25- 29: gltvm EaarD ngvpg FER_CAUCR : 13- 17: qhdga EqviD vkpgl FER_CAUCR : 55- 59: hvyvd EawlD ktgdk FER_CAUCR : 69- 73: ksame EsmlD faenv FER_ECOLI : 24- 28: eansg EtilD aalrn FER_ECOLI : 66- 70: lpess EqedD mldka FER_HAEIN : 69- 73: tsdqe EdmlD kawgl PUTX_PSEPU : 54- 58: hvyvn EaftD kvpaa TERP_PSESP : 12- 16: deqsg EyavD aqdgq TERP_PSESP : 62- 66: veivg EanpD endll THCC_RHOSO : 69- 73: seeed EmldD tvspr P 16: 8.3401 21( 16) E-A Occurences: 21(16) ADX1_BOVIN : 126- 127: ifekl EA itdee ADX2_BOVIN : 126- 127: ifekl EA itdee ADXH_DROME : 6- 7: megac EA slact ADXH_DROME : 28- 29: lqklk EA eeqed ADX_CHICK : 128- 129: tvrvp EA vadar ADX_HUMAN : 48- 49: pggsa EA srsls ADX_MOUSE : 50- 51: prlha EA gpgrp ADX_MOUSE : 173- 174: tvrvp EA vadvr ADX_PIG : 68- 69: ifekl EA itdee ADX_PIG : 109- 110: tvrvp EA vadar ADX_RAT : 50- 51: phtla EA gpgrp ADX_RAT : 173- 174: tvrvp EA vadvr ADX_SHEEP : 62- 63: iyekl EA itdee FER6_RHOCA : 16- 17: trhev EA kpglt FER6_RHOCA : 25- 26: gltvm EA ardng FER_CAUCR : 55- 56: hvyvd EA wldkt FER_ECOLI : 19- 20: dgavl EA nsget FER_HAEIN : 109- 110: lnhan EA ah PUTX_PSEPU : 54- 55: hvyvn EA ftdkv TERP_PSESP : 62- 63: veivg EA npden THCC_RHOSO : 80- 81: vsprt EA srlsc Q 17: 7.8401 25( 16) E-x(0,1)-E Occurences: 25(16) ADX1_BOVIN : 131- 132: eaitd E-E ndmld ADX2_BOVIN : 131- 132: eaitd E-E ndmld ADXH_DROME : 28- 30: lqklk EaE eqedd ADXH_DROME : 30- 31: klkea E-E qeddl ADXH_DROME : 31- 33: lkeae EqE ddlld ADXH_DROME : 63- 65: smegm ElE lpkap ADX_CHICK : 92- 93: daitd E-E mdmld ADX_HUMAN : 133- 134: daitd E-E ndmld ADX_MOUSE : 137- 138: daitd E-E ndmld ADX_PIG : 73- 74: eaitd E-E ndmld ADX_RAT : 137- 138: daitd E-E ndmld ADX_SHEEP : 67- 68: eaitd E-E ndmld FER6_RHOCA : 14- 16: ngtrh EvE akpgl FER_CAUCR : 68- 69: dksam E-E smldf FER_ECOLI : 36- 38: lrngi EiE hacek FER_ECOLI : 66- 68: lpess EqE ddmld FER_ECOLI : 79- 81: kawgl EpE srlsc FER_HAEIN : 68- 69: etsdq E-E dmldk PUTX_PSEPU : 65- 67: vpaan ErE igmle TERP_PSESP : 51- 53: atcri EiE dawve THCC_RHOSO : 14- 16: dgtkh EvE vptgk THCC_RHOSO : 65- 66: fpsis E-E edeml THCC_RHOSO : 65- 67: fpsis EeE demld THCC_RHOSO : 66- 67: psise E-E demld THCC_RHOSO : 67- 69: sisee EdE mlddt THCC_RHOSO : 103- 104: ivrlp E-E qv R 18: 7.8401 20( 16) E-x(1,2)-M Occurences: 20(16) ADX1_BOVIN : 132- 135: aitde EndM ldlay ADX2_BOVIN : 132- 135: aitde EndM ldlay ADXH_DROME : 60- 62: ldksm Eg-M elelp ADX_CHICK : 92- 94: daitd Ee-M dmldl ADX_CHICK : 93- 96: aitde EmdM ldlay ADX_HUMAN : 134- 137: aitde EndM ldlay ADX_MOUSE : 138- 141: aitde EndM ldlaf ADX_PIG : 74- 77: aitde EndM ldlay ADX_RAT : 138- 141: aitde EndM ldlaf ADX_SHEEP : 68- 71: aitde EndM ldlay FER6_RHOCA : 67- 70: kalpt EtdM idfay FER_CAUCR : 68- 71: dksam EesM ldfae FER_CAUCR : 69- 71: ksame Es-M ldfae FER_ECOLI : 68- 71: esseq EddM ldkaw FER_HAEIN : 14- 16: edfcp Eg-M vvdaa FER_HAEIN : 68- 71: etsdq EedM ldkaw FER_HAEIN : 69- 71: tsdqe Ed-M ldkaw PUTX_PSEPU : 67- 70: aaner EigM lecvt TERP_PSESP : 76- 78: lqstg Ep-M tagtr THCC_RHOSO : 67- 70: sisee EdeM lddtv S 19: 7.8401 38( 16) D-x(3,4)-G Occurences: 38(16) ADX1_BOVIN : 97- 102: vqnnl DidgfG acegt ADX1_BOVIN : 137- 141: endml Dlay-G ltdrs ADX1_BOVIN : 144- 149: ayglt DrsrlG cqicl ADX2_BOVIN : 97- 102: vqnnl DidgfG acegt ADX2_BOVIN : 137- 141: endml Dlay-G ltdrs ADX2_BOVIN : 144- 149: ayglt DrsrlG cqicl ADXH_DROME : 56- 61: cqill DksmeG melel ADX_CHICK : 58- 63: vennl DidgfG acegt ADX_CHICK : 98- 102: emdml Dlay-G ltets ADX_HUMAN : 99- 104: vennl DidgfG acegt ADX_HUMAN : 139- 143: endml Dlay-G ltdrs ADX_HUMAN : 146- 151: ayglt DrsrlG cqicl ADX_MOUSE : 103- 108: iennl DidgfG acegt ADX_MOUSE : 143- 147: endml Dlaf-G ltdrs ADX_MOUSE : 150- 155: afglt DrsrlG cqvcl ADX_PIG : 39- 44: iennl DidgfG acegt ADX_PIG : 79- 83: endml Dlay-G ltdrs ADX_PIG : 86- 91: ayglt DrsrlG cqicl ADX_RAT : 103- 108: iennl DidgfG acegt ADX_RAT : 143- 147: endml Dlaf-G ltnrs ADX_SHEEP : 33- 38: vennl DidgfG acegt ADX_SHEEP : 73- 77: endml Dlay-G ltdrs ADX_SHEEP : 80- 85: ayglt DrsrlG cqicl FER6_RHOCA : 29- 34: meaar DngvpG idadc FER6_RHOCA : 36- 40: gvpgi Dadc-G gacac FER6_RHOCA : 36- 41: gvpgi DadcgG acacs FER_CAUCR : 17- 21: aeqvi Dvkp-G ltvme FER_CAUCR : 37- 41: nvpgi Dadc-G gacac FER_CAUCR : 37- 42: nvpgi DadcgG acaca FER_CAUCR : 92- 96: qikvs Dald-G lvvrl FER_ECOLI : 10- 15: ilphq DlcpdG avlea FER_ECOLI : 73- 77: eddml Dkaw-G lepes FER_HAEIN : 10- 15: flpne DfcpeG mvvda FER_HAEIN : 19- 23: egmvv Daat-G dnlle FER_HAEIN : 73- 77: eedml Dkaw-G lemds PUTX_PSEPU : 16- 20: trrel Dvad-G vslmq TERP_PSESP : 7- 11: rvvfi Deqs-G eyavd TERP_PSESP : 16- 20: geyav Daqd-G qslme TERP_PSESP : 91- 96: cqvfi DpsmdG livrv THCC_RHOSO : 92- 96: qlvvs Ddvd-G livrl T 20: 7.8401 35( 16) L-x(4,5)-E Occurences: 35(16) ADX1_BOVIN : 125- 131: hifek LeaitdE endml ADX2_BOVIN : 125- 131: hifek LeaitdE endml ADXH_DROME : 23- 28: vqhdy Lqklk-E aeeqe ADXH_DROME : 26- 31: dylqk Lkeae-E qeddl ADXH_DROME : 54- 60: lgcqi LldksmE gmele ADXH_DROME : 55- 60: gcqil Ldksm-E gmele ADX_CHICK : 48- 54: kpgds LldvvvE nnldi ADX_CHICK : 49- 54: pgdsl Ldvvv-E nnldi ADX_CHICK : 86- 92: hifek LdaitdE emdml ADX_CHICK : 99- 105: mdmld LaygltE tsrlg ADX_HUMAN : 89- 95: kvgds LldvvvE nnldi ADX_HUMAN : 90- 95: vgdsl Ldvvv-E nnldi ADX_HUMAN : 127- 133: hiyek LdaitdE endml ADX_MOUSE : 93- 99: kigds LldvviE nnldi ADX_MOUSE : 94- 99: igdsl Ldvvi-E nnldi ADX_MOUSE : 131- 137: hiyek LdaitdE endml ADX_PIG : 29- 35: kvgds LldvviE nnldi ADX_PIG : 30- 35: vgdsl Ldvvi-E nnldi ADX_PIG : 67- 73: hifek LeaitdE endml ADX_RAT : 93- 99: kvgds LldvviE nnldi ADX_RAT : 94- 99: vgdsl Ldvvi-E nnldi ADX_RAT : 131- 137: hiyek LdaitdE endml ADX_SHEEP : 23- 29: kvgds LldvvvE nnldi ADX_SHEEP : 24- 29: vgdsl Ldvvv-E nnldi ADX_SHEEP : 61- 67: hiyek LeaitdE endml FER6_RHOCA : 97- 103: slldg LvvhlpE kqi FER_CAUCR : 97- 103: daldg LvvrlpE sqh FER_ECOLI : 18- 24: pdgav LeansgE tilda FER_ECOLI : 31- 36: ildaa Lrngi-E iehac FER_ECOLI : 61- 66: egfds Lpess-E qeddm FER_HAEIN : 104- 109: ipkyn Lnhan-E aah PUTX_PSEPU : 71- 77: reigm LecvtaE lkpns TERP_PSESP : 70- 76: pdend LlqstgE pmtag TERP_PSESP : 71- 76: dendl Lqstg-E pmtag THCC_RHOSO : 97- 103: ddvdg LivrlpE eqv Number of patterns evaluated by Pratt:155 Total running time: 0 seconds