------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 15 sequences from file ADP_GLC_PYROPHOSPH_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 15 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ADP_GLC_PYROPHOSPH_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GLG1_ORYSA 483 GLG1_SOLTU 521 GLG1_WHEAT 301 GLG2_HORVU 527 GLG2_SOLTU 470 GLG2_WHEAT 296 GLG3_WHEAT 500 GLGC_AGRTU 420 GLGC_ANASP 429 GLGC_BACCL 250 GLGC_BACSU 380 GLGC_ECOLI 431 GLGC_HAEIN 444 GLGC_SALTY 431 GLGS_WHEAT 473 Pratt run started at Thu Feb 6 18:33:37 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.8503 15( 15) Y-W-x-D-x-G-T 2: 20.8503 15( 15) A-S-M-G-x-Y 3: 16.6802 15( 15) W-x-D-x-G-T 4: 16.6802 15( 15) D-F-G-x(4)-P 5: 16.6802 15( 15) S-M-G-x-Y 6: 16.1802 17( 15) G-x(3)-R-x(1,2)-I-x(5)-N 7: 15.6802 16( 15) A-S-x-G-x(1,3)-Y 8: 14.6802 15( 15) V-x(1,3)-E-A-x(3,5)-G 9: 14.6802 18( 15) A-x(3,5)-G-x(3)-R-x(0,2)-I 10: 14.6802 16( 15) A-x(0,2)-K-x(0,2)-P-x(5)-G 11: 12.5102 15( 15) D-x-G-T 12: 12.5102 15( 15) F-G-x(4)-P 13: 12.5102 16( 15) M-G-x-Y 14: 12.5102 17( 15) I-I-D 15: 12.0102 28( 15) G-x(1,2)-V-I 16: 12.0102 20( 15) G-x(0,1)-I-x(2)-F 17: 12.0102 20( 15) R-x(1,2)-I-x(5)-N 18: 12.0102 28( 15) A-S-x(1,2)-G 19: 12.0102 21( 15) Y-x(2,3)-D-Y 20: 12.0102 19( 15) G-x(3)-Y-x(2,3)-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 37.2217 15( 15) A-S-M-G-[IV]-Y-[IV]-[FI]-x(4)-[LM]-x(3)-[LV] B 2: 34.4907 17( 15) A-x(3,5)-G-x(3)-R-x(0,2)-I-[DTV]-[FIV]-x(3)-N-[ACS]-x(3)-[ADGN]-[GIL]-x(2)-[IMV] C 3: 33.9968 15( 15) A-S-M-G-x-Y-[IV]-[FI]-x(4)-[LM]-x(3)-[LV] D 4: 33.0516 15( 15) S-M-G-[IV]-Y-[IV]-[FI]-x(4)-[LM]-x(3)-[LV] E 5: 33.0516 15( 15) A-S-x-G-[IV]-Y-[IV]-[FI]-x(4)-[LM]-x(3)-[LV] F 6: 32.5629 15( 15) Y-W-[EKR]-D-[IV]-G-T-[ILV]-x-[AS] G 7: 31.8207 17( 15) G-x(3)-R-x(1,2)-I-[DTV]-[FIV]-x(3)-N-[ACS]-x(3)-[ADGN]-[GIL]-x(2)-[IMV] H 8: 30.7963 15( 15) I-I-D-x-[ANTV]-x(3)-[ACG]-x-[DNP]-[ASV]-x-[IL]-x(3)-[DEGS]-x(3)-[AEQ] I 9: 29.9161 15( 15) Y-W-x-D-[IV]-G-T-[ILV]-x-[AS] J 10: 28.8816 15( 15) M-G-[IV]-Y-[IV]-[FI]-x(4)-[LM]-x(3)-[LV] K 11: 28.3929 15( 15) W-[EKR]-D-[IV]-G-T-[ILV]-x-[AS] L 12: 27.3235 19( 15) R-x(1,2)-I-[DTV]-[FIV]-x(3)-N-[ACS]-x(3)-[ADEGN]-[GIL]-x(2)-[IMV] M 13: 25.7993 15( 15) D-F-G-x-[DE]-[ILV]-[IL]-P N 14: 24.2945 15( 15) G-[AD]-[DH]-x-Y-x(2,3)-D-x(4)-[ILV]-x(2)-[EH] O 15: 22.4358 16( 15) A-x(0,2)-K-x(0,2)-P-x-[ILV]-x(3)-G-x(3)-[FILV]-x(4)-[LMV] P 16: 21.6292 15( 15) F-G-x-[DE]-[ILV]-[IL]-P Q 17: 21.5760 15( 15) D-[IV]-G-T-[ILV]-x-[AS] R 18: 20.5301 15( 15) V-x(1,3)-E-A-x(3,5)-G-x(4)-[DNS]-x(4)-[IV] S 19: 19.1126 16( 15) Y-x(2,3)-D-Y-x(3)-[IL]-x(4)-[ADENS]-x(2)-[ADENS] T 20: 12.0102 17( 15) G-x(3)-R-x(1,2)-I Best patterns with alignements: fitness hits(seqs) Pattern A 1: 37.2217 15( 15) A-S-M-G-[IV]-Y-[IV]-[FI]-x(4)-[LM]-x(3)-[LV] Occurences: 15(15) GLG1_ORYSA : 256- 272: empyi ASMGIYVIsknvMlqlL reqfp GLG1_SOLTU : 298- 314: empfi ASMGIYVIskdvMlnlL rdkfp GLG1_WHEAT : 80- 96: kkpyi ASMGVYIFkkeiLlnlL rwrfp GLG2_HORVU : 306- 322: kypyi ASMGVYVFkrdvLlnlL ksrya GLG2_SOLTU : 249- 265: kspyi ASMGVYVFktdvLlklL kwsyp GLG2_WHEAT : 75- 91: kypyi ASMGVYVFkrdvLlnlL ksrya GLG3_WHEAT : 282- 298: kypyi ASMGVYVFkrdvLlnlL ksrya GLGC_AGRTU : 204- 220: egfal ASMGIYVFhtkfLmeaV rrdaa GLGC_ANASP : 208- 224: sqpyi ASMGIYVFkkdvLiklL keale GLGC_BACCL : 189- 205: pksnl ASMGIYIFnwplLreyL qidna GLGC_BACSU : 189- 205: pksnl ASMGIYIFnwplLkqyL emddq GLGC_ECOLI : 211- 227: psksl ASMGIYVFdadyLyelL eeddr GLGC_HAEIN : 218- 234: pdvsl ASMGIYVFdadyLykmL eqevn GLGC_SALTY : 210- 226: asksl ASMGIYVFdadyLyelL aaddk GLGS_WHEAT : 250- 266: empyi ASMGIYVIskhvMlqlL reqfp B 2: 34.4907 17( 15) A-x(3,5)-G-x(3)-R-x(0,2)-I-[DTV]-[FIV]-x(3)-N-[ACS]-x(3)-[ADGN]-[GIL]-x(2)-[IMV] Occurences: 17(15) GLG1_ORYSA : 73- 98: krakp Avpl--GanyRl-IDIpvsNClnsNIskI yvltq GLG1_SOLTU : 115- 140: krakp Avpl--GanyRl-IDIpvsNClnsNIskI yvltq GLG1_WHEAT : 273- 301: egvqe AdraseGfhiRsgITVvlkNSviaDGlvI GLG2_HORVU : 119- 144: tratp Avpi--GgcyRl-IDIpmsNCfnsGInkI fvmtq GLG2_HORVU : 499- 527: egvqe AdrpeeGyyiRsgIVViqkNAtikDGtvV GLG2_SOLTU : 62- 87: rtatp Avpv--GgcyRl-IDIpmsNCinsAInkI fvltq GLG2_WHEAT : 268- 296: egvqe AdrpeeGyyiRsgIVViqkNAtikDGtvV GLG3_WHEAT : 95- 120: tratp Avpi--GgcyRl-IDIpmsNCfnsGInkI fvmtq GLG3_WHEAT : 472- 500: egvqe AdrpeeGyyiRsgIVViqkNAtikDGtvV GLGC_AGRTU : 37- 62: rrakp Avyf--GgkaRi-IDFalsNAlnsGIrrI gvatq GLGC_ANASP : 401- 429: dnvqe AdresqGfyiRsgIVVvlkNAvitDGtiI GLGC_BACCL : 29- 54: niakp Avpf--GgkyRi-IDFtlsNCtnsGIdtV gvltq GLGC_BACSU : 29- 54: nmakp Avsf--GgkyRi-IDFtlsNCsnsGIdtV giltq GLGC_ECOLI : 44- 69: krakp Avhf--GgkfRi-IDFalsNCinsGIrrM gvitq GLGC_HAEIN : 50- 75: krakp Alyf--GgnrRi-IDFalsNCinsDLnrI gvvtq GLGC_SALTY : 44- 69: krakp Avhf--GgkfRv-IDFalsNClnsGIrrI gvitq GLGS_WHEAT : 67- 92: krakp Avpl--GanyRl-IDIpvsNClnsNIskI yvrtq C 3: 33.9968 15( 15) A-S-M-G-x-Y-[IV]-[FI]-x(4)-[LM]-x(3)-[LV] Occurences: 15(15) GLG1_ORYSA : 256- 272: empyi ASMGiYVIsknvMlqlL reqfp GLG1_SOLTU : 298- 314: empfi ASMGiYVIskdvMlnlL rdkfp GLG1_WHEAT : 80- 96: kkpyi ASMGvYIFkkeiLlnlL rwrfp GLG2_HORVU : 306- 322: kypyi ASMGvYVFkrdvLlnlL ksrya GLG2_SOLTU : 249- 265: kspyi ASMGvYVFktdvLlklL kwsyp GLG2_WHEAT : 75- 91: kypyi ASMGvYVFkrdvLlnlL ksrya GLG3_WHEAT : 282- 298: kypyi ASMGvYVFkrdvLlnlL ksrya GLGC_AGRTU : 204- 220: egfal ASMGiYVFhtkfLmeaV rrdaa GLGC_ANASP : 208- 224: sqpyi ASMGiYVFkkdvLiklL keale GLGC_BACCL : 189- 205: pksnl ASMGiYIFnwplLreyL qidna GLGC_BACSU : 189- 205: pksnl ASMGiYIFnwplLkqyL emddq GLGC_ECOLI : 211- 227: psksl ASMGiYVFdadyLyelL eeddr GLGC_HAEIN : 218- 234: pdvsl ASMGiYVFdadyLykmL eqevn GLGC_SALTY : 210- 226: asksl ASMGiYVFdadyLyelL aaddk GLGS_WHEAT : 250- 266: empyi ASMGiYVIskhvMlqlL reqfp D 4: 33.0516 15( 15) S-M-G-[IV]-Y-[IV]-[FI]-x(4)-[LM]-x(3)-[LV] Occurences: 15(15) GLG1_ORYSA : 257- 272: mpyia SMGIYVIsknvMlqlL reqfp GLG1_SOLTU : 299- 314: mpfia SMGIYVIskdvMlnlL rdkfp GLG1_WHEAT : 81- 96: kpyia SMGVYIFkkeiLlnlL rwrfp GLG2_HORVU : 307- 322: ypyia SMGVYVFkrdvLlnlL ksrya GLG2_SOLTU : 250- 265: spyia SMGVYVFktdvLlklL kwsyp GLG2_WHEAT : 76- 91: ypyia SMGVYVFkrdvLlnlL ksrya GLG3_WHEAT : 283- 298: ypyia SMGVYVFkrdvLlnlL ksrya GLGC_AGRTU : 205- 220: gfala SMGIYVFhtkfLmeaV rrdaa GLGC_ANASP : 209- 224: qpyia SMGIYVFkkdvLiklL keale GLGC_BACCL : 190- 205: ksnla SMGIYIFnwplLreyL qidna GLGC_BACSU : 190- 205: ksnla SMGIYIFnwplLkqyL emddq GLGC_ECOLI : 212- 227: sksla SMGIYVFdadyLyelL eeddr GLGC_HAEIN : 219- 234: dvsla SMGIYVFdadyLykmL eqevn GLGC_SALTY : 211- 226: sksla SMGIYVFdadyLyelL aaddk GLGS_WHEAT : 251- 266: mpyia SMGIYVIskhvMlqlL reqfp E 5: 33.0516 15( 15) A-S-x-G-[IV]-Y-[IV]-[FI]-x(4)-[LM]-x(3)-[LV] Occurences: 15(15) GLG1_ORYSA : 256- 272: empyi ASmGIYVIsknvMlqlL reqfp GLG1_SOLTU : 298- 314: empfi ASmGIYVIskdvMlnlL rdkfp GLG1_WHEAT : 80- 96: kkpyi ASmGVYIFkkeiLlnlL rwrfp GLG2_HORVU : 306- 322: kypyi ASmGVYVFkrdvLlnlL ksrya GLG2_SOLTU : 249- 265: kspyi ASmGVYVFktdvLlklL kwsyp GLG2_WHEAT : 75- 91: kypyi ASmGVYVFkrdvLlnlL ksrya GLG3_WHEAT : 282- 298: kypyi ASmGVYVFkrdvLlnlL ksrya GLGC_AGRTU : 204- 220: egfal ASmGIYVFhtkfLmeaV rrdaa GLGC_ANASP : 208- 224: sqpyi ASmGIYVFkkdvLiklL keale GLGC_BACCL : 189- 205: pksnl ASmGIYIFnwplLreyL qidna GLGC_BACSU : 189- 205: pksnl ASmGIYIFnwplLkqyL emddq GLGC_ECOLI : 211- 227: psksl ASmGIYVFdadyLyelL eeddr GLGC_HAEIN : 218- 234: pdvsl ASmGIYVFdadyLykmL eqevn GLGC_SALTY : 210- 226: asksl ASmGIYVFdadyLyelL aaddk GLGS_WHEAT : 250- 266: empyi ASmGIYVIskhvMlqlL reqfp F 6: 32.5629 15( 15) Y-W-[EKR]-D-[IV]-G-T-[ILV]-x-[AS] Occurences: 15(15) GLG1_ORYSA : 305- 314: ylydg YWEDIGTIeA fynan GLG1_SOLTU : 347- 356: ylydg YWEDIGTIeA fynan GLG1_WHEAT : 128- 137: ylfnd YWEDIGTIkS ffean GLG2_HORVU : 354- 363: yvftd YWEDIGTIrS ffdan GLG2_SOLTU : 297- 306: yifkd YWEDIGTIkS fynas GLG2_WHEAT : 123- 132: yvftd YWEDIGTIrS ffdan GLG3_WHEAT : 330- 339: yvftd YWEDIGTIrS ffdan GLGC_AGRTU : 266- 275: fehep YWRDVGTIdA ywqan GLGC_ANASP : 255- 264: ylfdd YWEDIGTIeA fynan GLGC_BACCL : 241- 250: ypfkg YWKDVGTVkS GLGC_BACSU : 241- 250: ypfkg YWKDVGTVqS lwean GLGC_ECOLI : 273- 282: pdaep YWRDVGTLeA ywkan GLGC_HAEIN : 280- 289: tegei YWRDVGTLdS fwqsn GLGC_SALTY : 272- 281: pqaep YWRDVGTLeA ywkan GLGS_WHEAT : 299- 308: ylydg YWEDIGTIeA fynan G 7: 31.8207 17( 15) G-x(3)-R-x(1,2)-I-[DTV]-[FIV]-x(3)-N-[ACS]-x(3)-[ADGN]-[GIL]-x(2)-[IMV] Occurences: 17(15) GLG1_ORYSA : 77- 98: pavpl GanyRl-IDIpvsNClnsNIskI yvltq GLG1_SOLTU : 119- 140: pavpl GanyRl-IDIpvsNClnsNIskI yvltq GLG1_WHEAT : 279- 301: drase GfhiRsgITVvlkNSviaDGlvI GLG2_HORVU : 123- 144: pavpi GgcyRl-IDIpmsNCfnsGInkI fvmtq GLG2_HORVU : 505- 527: drpee GyyiRsgIVViqkNAtikDGtvV GLG2_SOLTU : 66- 87: pavpv GgcyRl-IDIpmsNCinsAInkI fvltq GLG2_WHEAT : 274- 296: drpee GyyiRsgIVViqkNAtikDGtvV GLG3_WHEAT : 99- 120: pavpi GgcyRl-IDIpmsNCfnsGInkI fvmtq GLG3_WHEAT : 478- 500: drpee GyyiRsgIVViqkNAtikDGtvV GLGC_AGRTU : 41- 62: pavyf GgkaRi-IDFalsNAlnsGIrrI gvatq GLGC_ANASP : 407- 429: dresq GfyiRsgIVVvlkNAvitDGtiI GLGC_BACCL : 33- 54: pavpf GgkyRi-IDFtlsNCtnsGIdtV gvltq GLGC_BACSU : 33- 54: pavsf GgkyRi-IDFtlsNCsnsGIdtV giltq GLGC_ECOLI : 48- 69: pavhf GgkfRi-IDFalsNCinsGIrrM gvitq GLGC_HAEIN : 54- 75: palyf GgnrRi-IDFalsNCinsDLnrI gvvtq GLGC_SALTY : 48- 69: pavhf GgkfRv-IDFalsNClnsGIrrI gvitq GLGS_WHEAT : 71- 92: pavpl GanyRl-IDIpvsNClnsNIskI yvrtq H 8: 30.7963 15( 15) I-I-D-x-[ANTV]-x(3)-[ACG]-x-[DNP]-[ASV]-x-[IL]-x(3)-[DEGS]-x(3)-[AEQ] Occurences: 15(15) GLG1_ORYSA : 429- 450: hirra IIDkNariGdNVkIinvDnvqE aaret GLG1_SOLTU : 471- 492: hikra IIDkNariGdNVkIinkDnvqE aaret GLG1_WHEAT : 251- 272: siqnc IIDkNariGkNVtIanaEgvqE adras GLG2_HORVU : 477- 498: kisnc IIDmNariGrDVvIsnkEgvqE adrpe GLG2_SOLTU : 420- 441: kirkc IIDkNakiGkNVsIinkDgvqE adrpe GLG2_WHEAT : 246- 267: kisnc IIDmNariGrDVvIsnkEgvqE adrpe GLG3_WHEAT : 450- 471: kisnc IIDmNariGrDVvIsnkEgvqE adrpe GLGC_AGRTU : 46- 67: ggkar IIDfAlsnAlNSgIrriGvatQ ykahs GLGC_ANASP : 379- 400: iirra IIDkNariGhDVkIinkDnvqE adres GLGC_BACCL : 38- 59: ggkyr IIDfTlsnCtNSgIdtvGvltQ yqpll GLGC_BACSU : 38- 59: ggkyr IIDfTlsnCsNSgIdtvGiltQ yqple GLGC_ECOLI : 53- 74: ggkfr IIDfAlsnCiNSgIrrmGvitQ yqsht GLGC_HAEIN : 59- 80: ggnrr IIDfAlsnCiNSdLnriGvvtQ yaahs GLGC_SALTY : 189- 210: desdk IIDfVekpAnPAmLgdaSkslA smgiy GLGS_WHEAT : 423- 444: hikra IIDkNariGdNVmIinvDnvqE aaret I 9: 29.9161 15( 15) Y-W-x-D-[IV]-G-T-[ILV]-x-[AS] Occurences: 15(15) GLG1_ORYSA : 305- 314: ylydg YWeDIGTIeA fynan GLG1_SOLTU : 347- 356: ylydg YWeDIGTIeA fynan GLG1_WHEAT : 128- 137: ylfnd YWeDIGTIkS ffean GLG2_HORVU : 354- 363: yvftd YWeDIGTIrS ffdan GLG2_SOLTU : 297- 306: yifkd YWeDIGTIkS fynas GLG2_WHEAT : 123- 132: yvftd YWeDIGTIrS ffdan GLG3_WHEAT : 330- 339: yvftd YWeDIGTIrS ffdan GLGC_AGRTU : 266- 275: fehep YWrDVGTIdA ywqan GLGC_ANASP : 255- 264: ylfdd YWeDIGTIeA fynan GLGC_BACCL : 241- 250: ypfkg YWkDVGTVkS GLGC_BACSU : 241- 250: ypfkg YWkDVGTVqS lwean GLGC_ECOLI : 273- 282: pdaep YWrDVGTLeA ywkan GLGC_HAEIN : 280- 289: tegei YWrDVGTLdS fwqsn GLGC_SALTY : 272- 281: pqaep YWrDVGTLeA ywkan GLGS_WHEAT : 299- 308: ylydg YWeDIGTIeA fynan J 10: 28.8816 15( 15) M-G-[IV]-Y-[IV]-[FI]-x(4)-[LM]-x(3)-[LV] Occurences: 15(15) GLG1_ORYSA : 258- 272: pyias MGIYVIsknvMlqlL reqfp GLG1_SOLTU : 300- 314: pfias MGIYVIskdvMlnlL rdkfp GLG1_WHEAT : 82- 96: pyias MGVYIFkkeiLlnlL rwrfp GLG2_HORVU : 308- 322: pyias MGVYVFkrdvLlnlL ksrya GLG2_SOLTU : 251- 265: pyias MGVYVFktdvLlklL kwsyp GLG2_WHEAT : 77- 91: pyias MGVYVFkrdvLlnlL ksrya GLG3_WHEAT : 284- 298: pyias MGVYVFkrdvLlnlL ksrya GLGC_AGRTU : 206- 220: falas MGIYVFhtkfLmeaV rrdaa GLGC_ANASP : 210- 224: pyias MGIYVFkkdvLiklL keale GLGC_BACCL : 191- 205: snlas MGIYIFnwplLreyL qidna GLGC_BACSU : 191- 205: snlas MGIYIFnwplLkqyL emddq GLGC_ECOLI : 213- 227: kslas MGIYVFdadyLyelL eeddr GLGC_HAEIN : 220- 234: vslas MGIYVFdadyLykmL eqevn GLGC_SALTY : 212- 226: kslas MGIYVFdadyLyelL aaddk GLGS_WHEAT : 252- 266: pyias MGIYVIskhvMlqlL reqfp K 11: 28.3929 15( 15) W-[EKR]-D-[IV]-G-T-[ILV]-x-[AS] Occurences: 15(15) GLG1_ORYSA : 306- 314: lydgy WEDIGTIeA fynan GLG1_SOLTU : 348- 356: lydgy WEDIGTIeA fynan GLG1_WHEAT : 129- 137: lfndy WEDIGTIkS ffean GLG2_HORVU : 355- 363: vftdy WEDIGTIrS ffdan GLG2_SOLTU : 298- 306: ifkdy WEDIGTIkS fynas GLG2_WHEAT : 124- 132: vftdy WEDIGTIrS ffdan GLG3_WHEAT : 331- 339: vftdy WEDIGTIrS ffdan GLGC_AGRTU : 267- 275: ehepy WRDVGTIdA ywqan GLGC_ANASP : 256- 264: lfddy WEDIGTIeA fynan GLGC_BACCL : 242- 250: pfkgy WKDVGTVkS GLGC_BACSU : 242- 250: pfkgy WKDVGTVqS lwean GLGC_ECOLI : 274- 282: daepy WRDVGTLeA ywkan GLGC_HAEIN : 281- 289: egeiy WRDVGTLdS fwqsn GLGC_SALTY : 273- 281: qaepy WRDVGTLeA ywkan GLGS_WHEAT : 300- 308: lydgy WEDIGTIeA fynan L 12: 27.3235 19( 15) R-x(1,2)-I-[DTV]-[FIV]-x(3)-N-[ACS]-x(3)-[ADEGN]-[GIL]-x(2)-[IMV] Occurences: 19(15) GLG1_ORYSA : 81- 98: lgany Rl-IDIpvsNClnsNIskI yvltq GLG1_SOLTU : 123- 140: lgany Rl-IDIpvsNClnsNIskI yvltq GLG1_WHEAT : 283- 301: egfhi RsgITVvlkNSviaDGlvI GLG2_HORVU : 127- 144: iggcy Rl-IDIpmsNCfnsGInkI fvmtq GLG2_HORVU : 509- 527: egyyi RsgIVViqkNAtikDGtvV GLG2_SOLTU : 70- 87: vggcy Rl-IDIpmsNCinsAInkI fvltq GLG2_WHEAT : 278- 296: egyyi RsgIVViqkNAtikDGtvV GLG3_WHEAT : 103- 120: iggcy Rl-IDIpmsNCfnsGInkI fvmtq GLG3_WHEAT : 482- 500: egyyi RsgIVViqkNAtikDGtvV GLGC_AGRTU : 45- 62: fggka Ri-IDFalsNAlnsGIrrI gvatq GLGC_ANASP : 36- 53: vagky Rl-IDIpvsNCinsEIfkI yvltq GLGC_ANASP : 411- 429: qgfyi RsgIVVvlkNAvitDGtiI GLGC_BACCL : 37- 54: fggky Ri-IDFtlsNCtnsGIdtV gvltq GLGC_BACSU : 37- 54: fggky Ri-IDFtlsNCsnsGIdtV giltq GLGC_ECOLI : 52- 69: fggkf Ri-IDFalsNCinsGIrrM gvitq GLGC_HAEIN : 57- 75: yfggn RriIDFalsNCinsDLnrI gvvtq GLGC_HAEIN : 58- 75: fggnr Ri-IDFalsNCinsDLnrI gvvtq GLGC_SALTY : 52- 69: fggkf Rv-IDFalsNClnsGIrrI gvitq GLGS_WHEAT : 75- 92: lgany Rl-IDIpvsNClnsNIskI yvrtq M 13: 25.7993 15( 15) D-F-G-x-[DE]-[ILV]-[IL]-P Occurences: 15(15) GLG1_ORYSA : 281- 288: fpgan DFGsEVIP gatni GLG1_SOLTU : 323- 330: fpgan DFGsEVIP gatsl GLG1_WHEAT : 105- 112: fptan DFGsEIIP aaare GLG2_HORVU : 331- 338: yaelh DFGsEILP ralhd GLG2_SOLTU : 274- 281: yptsn DFGsEIIP aaidd GLG2_WHEAT : 100- 107: yaelh DFGsEILP ralhd GLG3_WHEAT : 307- 314: yaelh DFGsEILP ralhd GLGC_AGRTU : 232- 239: ptssr DFGkDIIP yiveh GLGC_ANASP : 232- 239: alert DFGkEIIP daakd GLGC_BACCL : 217- 224: phssh DFGkDVIP rllre GLGC_BACSU : 217- 224: pyssh DFGkDIIP lllee GLGC_ECOLI : 239- 246: enssh DFGkDLIP kitea GLGC_HAEIN : 246- 253: pqtsh DFGkDVLP kclee GLGC_SALTY : 238- 245: dassh DFGkDIIP kitre GLGS_WHEAT : 275- 282: fpgan DFGsEVIP gatst N 14: 24.2945 15( 15) G-[AD]-[DH]-x-Y-x(2,3)-D-x(4)-[ILV]-x(2)-[EH] Occurences: 15(15) GLG1_ORYSA : 172- 187: flila GDHlYrm-DyekfIqaH retds GLG1_SOLTU : 214- 229: ylila GDHlYrm-DyekfIqaH retda GLG1_WHEAT : 7- 22: vlils GDHlYrm-DymdfVqsH rqrda GLG2_HORVU : 444- 460: nammm GADsYeteDeisrLmsE gkvpi GLG2_SOLTU : 165- 180: ivvls GDHlYrm-DymelVqnH idrna GLG2_WHEAT : 213- 229: nammm GADsYeteDeisrLmsE gkvpi GLG3_WHEAT : 417- 433: nammm GADsYeteDemsrLmsE gkvpi GLGC_AGRTU : 134- 149: mvila GDHiYkm-DyeymLqqH vdsga GLGC_ANASP : 124- 139: flils GDHlYrm-DyrlfIqrH retna GLGC_BACCL : 126- 141: vlvls GDHiYkm-DyqqmLdyH iakqa GLGC_BACSU : 126- 141: vlils GDHiYkm-DygkmLdyH iekka GLGC_ECOLI : 141- 156: vvila GDHiYkq-DysrmLidH vekga GLGC_HAEIN : 148- 163: ilila GDHiYkq-DysvmLmdH vnsga GLGC_SALTY : 141- 156: vvila GDHiYkq-DysrmLidH vekga GLGS_WHEAT : 166- 181: ylila GDHlYrm-DyekfIqaH retda O 15: 22.4358 16( 15) A-x(0,2)-K-x(0,2)-P-x-[ILV]-x(3)-G-x(3)-[FILV]-x(4)-[LMV] Occurences: 16(15) GLG1_ORYSA : 249- 268: lddvr A--KemPyIasmGiyvIsknvM lqllr GLG1_SOLTU : 291- 310: lddkr A--KemPfIasmGiyvIskdvM lnllr GLG1_WHEAT : 73- 92: kemee AekK--PyIasmGvyiFkkeiL lnllr GLG1_WHEAT : 73- 92: kemee Ae-Kk-PyIasmGvyiFkkeiL lnllr GLG2_HORVU : 300- 318: aiddp A--Ky-PyIasmGvyvFkrdvL lnllk GLG2_SOLTU : 242- 261: lspqd Ak-Ks-PyIasmGvyvFktdvL lkllk GLG2_SOLTU : 242- 261: lspqd A--KksPyIasmGvyvFktdvL lkllk GLG2_WHEAT : 69- 87: aiddp A--Ky-PyIasmGvyvFkrdvL lnllk GLG3_WHEAT : 276- 294: aiddp A--Ky-PyIasmGvyvFkrdvL lnllk GLGC_AGRTU : 34- 51: ltdrr A--K--PaVyfgGkarIidfaL snaln GLGC_ANASP : 25- 42: ltklr A--K--PaVpvaGkyrLidipV sncin GLGC_BACCL : 26- 43: ltkni A--K--PaVpfgGkyrIidftL snctn GLGC_BACSU : 26- 43: ltknm A--K--PaVsfgGkyrIidftL sncsn GLGC_ECOLI : 41- 58: ltnkr A--K--PaVhfgGkfrIidfaL sncin GLGC_HAEIN : 47- 64: ltdkr A--K--PaLyfgGnrrIidfaL sncin GLGC_SALTY : 41- 58: lankr A--K--PaVhfgGkfrVidfaL sncln GLGS_WHEAT : 241- 262: lgldd AraKemPyIasmGiyvIskhvM lqllr GLGS_WHEAT : 243- 262: lddar A--KemPyIasmGiyvIskhvM lqllr P 16: 21.6292 15( 15) F-G-x-[DE]-[ILV]-[IL]-P Occurences: 15(15) GLG1_ORYSA : 282- 288: pgand FGsEVIP gatni GLG1_SOLTU : 324- 330: pgand FGsEVIP gatsl GLG1_WHEAT : 106- 112: ptand FGsEIIP aaare GLG2_HORVU : 332- 338: aelhd FGsEILP ralhd GLG2_SOLTU : 275- 281: ptsnd FGsEIIP aaidd GLG2_WHEAT : 101- 107: aelhd FGsEILP ralhd GLG3_WHEAT : 308- 314: aelhd FGsEILP ralhd GLGC_AGRTU : 233- 239: tssrd FGkDIIP yiveh GLGC_ANASP : 233- 239: lertd FGkEIIP daakd GLGC_BACCL : 218- 224: hsshd FGkDVIP rllre GLGC_BACSU : 218- 224: ysshd FGkDIIP lllee GLGC_ECOLI : 240- 246: nsshd FGkDLIP kitea GLGC_HAEIN : 247- 253: qtshd FGkDVLP kclee GLGC_SALTY : 239- 245: asshd FGkDIIP kitre GLGS_WHEAT : 276- 282: pgand FGsEVIP gatst Q 17: 21.5760 15( 15) D-[IV]-G-T-[ILV]-x-[AS] Occurences: 15(15) GLG1_ORYSA : 308- 314: dgywe DIGTIeA fynan GLG1_SOLTU : 350- 356: dgywe DIGTIeA fynan GLG1_WHEAT : 131- 137: ndywe DIGTIkS ffean GLG2_HORVU : 357- 363: tdywe DIGTIrS ffdan GLG2_SOLTU : 300- 306: kdywe DIGTIkS fynas GLG2_WHEAT : 126- 132: tdywe DIGTIrS ffdan GLG3_WHEAT : 333- 339: tdywe DIGTIrS ffdan GLGC_AGRTU : 269- 275: epywr DVGTIdA ywqan GLGC_ANASP : 258- 264: ddywe DIGTIeA fynan GLGC_BACCL : 244- 250: kgywk DVGTVkS GLGC_BACSU : 244- 250: kgywk DVGTVqS lwean GLGC_ECOLI : 276- 282: epywr DVGTLeA ywkan GLGC_HAEIN : 283- 289: eiywr DVGTLdS fwqsn GLGC_SALTY : 275- 281: epywr DVGTLeA ywkan GLGS_WHEAT : 302- 308: dgywe DIGTIeA fynan R 18: 20.5301 15( 15) V-x(1,3)-E-A-x(3,5)-G-x(4)-[DNS]-x(4)-[IV] Occurences: 15(15) GLG1_ORYSA : 448- 467: invdn Vq--EAaretdGyfikSgivtV ikdal GLG1_SOLTU : 490- 509: inkdn Vq--EAaretdGyfikSgivtV ikdal GLG1_WHEAT : 270- 289: anaeg Vq--EAdraseGfhirSgitvV lknsv GLG2_HORVU : 496- 515: snkeg Vq--EAdrpeeGyyirSgivvI qknat GLG2_SOLTU : 439- 458: inkdg Vq--EAdrpeeGfyirSgiiiI lekat GLG2_WHEAT : 265- 284: snkeg Vq--EAdrpeeGyyirSgivvI qknat GLG3_WHEAT : 469- 488: snkeg Vq--EAdrpeeGyyirSgivvI qknat GLGC_AGRTU : 163- 182: igcle VprmEAtgf--GvmhvNekdeI idfie GLGC_ANASP : 398- 417: inkdn Vq--EAdresqGfyirSgivvV lknav GLGC_BACCL : 155- 174: isvie VpweEAsrf--GimntNenmeI vefae GLGC_BACSU : 155- 174: isvie VgweEAsrf--GimkaNpdgtI thfde GLGC_ECOLI : 170- 189: vacmp VpieEAsaf--GvmavDendkI iefve GLGC_HAEIN : 177- 196: vgcie VprsEAhef--GvmavNenlkV kafve GLGC_SALTY : 170- 189: vacmp VpikEAtaf--GvmavDesdkI idfve GLGS_WHEAT : 442- 461: invdn Vq--EAaretdGyfikSgivtV ikdal S 19: 19.1126 16( 15) Y-x(2,3)-D-Y-x(3)-[IL]-x(4)-[ADENS]-x(2)-[ADENS] Occurences: 16(15) GLG1_ORYSA : 176- 192: agdhl Yrm-DYekfIqahrEtdS ditva GLG1_SOLTU : 218- 234: agdhl Yrm-DYekfIqahrEtdA ditva GLG1_WHEAT : 123- 140: invka YlfnDYwedIgtikSffE anlal GLG2_HORVU : 349- 366: hnvqa YvftDYwedIgtirSffD anmal GLG2_SOLTU : 292- 309: ynvqa YifkDYwedIgtikSfyN aslal GLG2_WHEAT : 118- 135: hnvqa YvftDYwedIgtirSffD anmsl GLG3_WHEAT : 325- 342: hnvqa YvftDYwedIgtirSffD anral GLGC_AGRTU : 138- 154: agdhi Ykm-DYeymLqqhvDsgA dvtig GLGC_ANASP : 128- 144: sgdhl Yrm-DYrlfIqrhrEtnA ditls GLGC_ANASP : 250- 267: hnvqa YlfdDYwedIgtieAfyN anlal GLGC_BACCL : 130- 146: sgdhi Ykm-DYqqmLdyhiAkqA datis GLGC_BACSU : 130- 146: sgdhi Ykm-DYgkmLdyhiEkkA dvtis GLGC_ECOLI : 145- 161: agdhi Ykq-DYsrmLidhvEkgA rctva GLGC_HAEIN : 152- 168: agdhi Ykq-DYsvmLmdhvNsgA kctvg GLGC_SALTY : 145- 161: agdhi Ykq-DYsrmLidhvEkgA rctva GLGS_WHEAT : 170- 186: agdhl Yrm-DYekfIqahrEtdA ditva T 20: 12.0102 17( 15) G-x(3)-R-x(1,2)-I Occurences: 17(15) GLG1_ORYSA : 77- 83: pavpl GanyRl-I dipvs GLG1_SOLTU : 119- 125: pavpl GanyRl-I dipvs GLG1_WHEAT : 279- 286: drase GfhiRsgI tvvlk GLG2_HORVU : 123- 129: pavpi GgcyRl-I dipms GLG2_HORVU : 505- 512: drpee GyyiRsgI vviqk GLG2_SOLTU : 66- 72: pavpv GgcyRl-I dipms GLG2_WHEAT : 274- 281: drpee GyyiRsgI vviqk GLG3_WHEAT : 99- 105: pavpi GgcyRl-I dipms GLG3_WHEAT : 478- 485: drpee GyyiRsgI vviqk GLGC_AGRTU : 41- 47: pavyf GgkaRi-I dfals GLGC_ANASP : 407- 414: dresq GfyiRsgI vvvlk GLGC_BACCL : 33- 39: pavpf GgkyRi-I dftls GLGC_BACSU : 33- 39: pavsf GgkyRi-I dftls GLGC_ECOLI : 48- 54: pavhf GgkfRi-I dfals GLGC_HAEIN : 54- 60: palyf GgnrRi-I dfals GLGC_SALTY : 48- 54: pavhf GgkfRv-I dfals GLGS_WHEAT : 71- 77: pavpl GanyRl-I dipvs Number of patterns evaluated by Pratt:3718 Total running time: 6 seconds